Psyllid ID: psy9936

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MTKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKPPEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKALGVKEIVKSLTGAPDKNPDVEKPKSVLDRFR
Secondary Structure (PSIPRED)
cccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEccccccEEEEEEcccccEEEEcccEEEEEccccccccccccccccccccEEEEEEEcccEEEEcEEEEEEEEccEEEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccHHHHHHHcccHHHHHHEccEEEEEccccEEEEEHcccccccHHHccccEEEEEEEccccEEEEEEccccHEEEEEccccccccHEEcccccEEEEEEccccEEEEEcccccccHHEEEcccccEEEEEEccccEEEEEcccccEEEEEEHHcccccHHHcccccccccEEEccccEEEEEcccEEEEEcccccccccccccEEcccccccccEEEEEEEccHHHEEEEcccccccEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTKQFDLDLQFGIYRMNYtkngrhlllggkrghvaAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNkvtrmeflpyHFLLATASEEGYLSWLDTSIGKIVsdfsakkgklsvmtqnpynaciclghrngtvtmwsptvqkplasllchkagiqsvavnhtgtymatsagdsqlrIWDVrnlegplntfrtrtpinnlafsqRGLLATsrgniveflkppeinfeprrkankaggsvqrAKVKKIVRETAKKDFIQSTKALGVKEIVKSltgapdknpdvekpksvldrfr
Flexible Loop (DISEMBL)
MTKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAtsagdsqlrIWDVRNLEGPlntfrtrtpinnlafSQRGLLATSRGNIVEFlkppeinfeprrkankaggsvqrakvkKIVREtakkdfiqstkalgvKEIVksltgapdknpdvekpksvldrfr
Low Complexity Region (SEG)
MTKQFDLDLQFGIYRMNYTKNgrhlllggkrghVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKPPEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKALGVKEIVKSLTGAPDKNPDVEKPKSVLDRFR
Disordered region (IsUnstruct)
****FDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLK***********************************FIQSTKALGVKEI*************************
Disordered Region (DISOPRED)
*TKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKPPEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKALGVKEIVKSLTGAPDKNPDVEKPKSVLDRFR
Disordered Region (DISEMBL)
MTKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKPPEINFEPRRK************VKKIVRETAKKDFIQSTKALGVKEIVKSLTGAPDK***************
Disordered Region (DISPRO)
MTKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKPPEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKALGVKEIVKSLTGAPDKNPDVEKPKSV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKPPEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKALGVKEIVKSLTGAPDKNPDVEKPKSVLDRFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q9Z0H1	622	WD repeat-containing prot	yes	N/A	0.752	0.381	0.600	5e-86
O15213	610	WD repeat-containing prot	yes	N/A	0.752	0.388	0.596	6e-86
Q5TJE7	612	WD repeat-containing prot	yes	N/A	0.752	0.387	0.592	7e-85
Q9P4X3	520	Probable U3 small nucleol	yes	N/A	0.739	0.448	0.459	2e-60
P40055	554	U3 small nucleolar RNA-as	yes	N/A	0.761	0.433	0.439	2e-57
Q8TC44	478	POC1 centriolar protein h	no	N/A	0.453	0.299	0.299	3e-09
Q5RD06	451	POC1 centriolar protein h	no	N/A	0.453	0.317	0.292	1e-08
Q10051	492	Pre-mRNA-processing facto	no	N/A	0.425	0.272	0.278	2e-08
Q2TBP4	407	POC1 centriolar protein h	no	N/A	0.758	0.587	0.216	8e-07
Q8NBT0	407	POC1 centriolar protein h	no	N/A	0.688	0.533	0.231	9e-07

>sp|Q9Z0H1|WDR46_MOUSE WD repeat-containing protein 46 OS=Mus musculus GN=Wdr46 PE=2 SV=1

 Score =  318 bits (814), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 184/238 (77%), Gaps = 1/238 (0%)

Query: 2   TKQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWL 60
            K FDL+L QFG YR+NY++ GRHL LGG+RGHVAA DWV K L CE+NVME V DI +L
Sbjct: 185 AKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMCEINVMEAVRDIHFL 244

Query: 61  HLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS 120
           H E + AVAQ  W+YIYDNQGIELHC++  ++VTR+EFLP+HFLLAT SE G+L++LD S
Sbjct: 245 HSEALLAVAQNRWLYIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATTSETGFLTYLDVS 304

Query: 121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV 180
           +GKIV+  + + G+LSVM QNPYNA I LGH NGTV++WSP V++PLA +LCH+ G+++V
Sbjct: 305 VGKIVTALNVRAGRLSVMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAV 364

Query: 181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIV 238
           AV+ TGTYMATS  D QL+I+D+R    PL++        +LAFSQRGLL    G++V
Sbjct: 365 AVDSTGTYMATSGLDHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVV 422

Mus musculus (taxid: 10090)

>sp|O15213|WDR46_HUMAN WD repeat-containing protein 46 OS=Homo sapiens GN=WDR46 PE=1 SV=3

 Score =  317 bits (813), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 186/238 (78%), Gaps = 1/238 (0%)

Query: 2   TKQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWL 60
            K FDL+L QFG YR+NY++ GRHL  GG+RGHVAA DWV K L CE+NVME V DI++L
Sbjct: 186 AKHFDLNLRQFGPYRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFL 245

Query: 61  HLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS 120
           H E + AVAQ  W++IYDNQGIELHC++  ++VTR+EFLP+HFLLATASE G+L++LD S
Sbjct: 246 HSEALLAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVS 305

Query: 121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV 180
           +GKIV+  +A+ G+L VM+QNPYNA I LGH NGTV++WSP +++PLA +LCH+ G+++V
Sbjct: 306 VGKIVAALNARAGRLDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAV 365

Query: 181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIV 238
           AV+ TGTYMATS  D QL+I+D+R    PL+T        +LAFSQRGLL    G++V
Sbjct: 366 AVDSTGTYMATSGLDHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVV 423

Homo sapiens (taxid: 9606)

>sp|Q5TJE7|WDR46_CANFA WD repeat-containing protein 46 OS=Canis familiaris GN=WDR46 PE=3 SV=1

 Score =  314 bits (804), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 184/238 (77%), Gaps = 1/238 (0%)

Query: 2   TKQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWL 60
            K FDL+L QFG YR+NY+  GRHL  GG RGHVA  DWV K L CE+NVME V DI++L
Sbjct: 187 AKHFDLNLRQFGPYRLNYSPVGRHLAFGGHRGHVATLDWVTKRLMCEINVMEAVRDIRFL 246

Query: 61  HLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS 120
           H E +FAVAQ  W++IYDNQGIELHC++  ++VTR+EFLP+HFLLATASE G+L++LD S
Sbjct: 247 HSEALFAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVS 306

Query: 121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV 180
           +GKIV+  +A+ G+L VMT+NPYNA I LGH NGTV++WSP +++PLA +LCH+ G+++V
Sbjct: 307 VGKIVAALNARAGRLDVMTKNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAV 366

Query: 181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIV 238
           AV+ TGTYMATS  D QL+I+D+R +  PL+         +LAFSQRGLLA    ++V
Sbjct: 367 AVDSTGTYMATSGLDHQLKIFDLRGMFQPLSARTLPQGAGHLAFSQRGLLAAGMSDVV 424

Canis familiaris (taxid: 9615)

>sp|Q9P4X3|UTP7_SCHPO Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp7 PE=3 SV=1

 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/235 (45%), Positives = 151/235 (64%), Gaps = 2/235 (0%)

Query: 2   TKQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWL 60
           TK F LDL +FG Y  +YT++GR +LLGG++GH++AFDW    L  E+++ E V D+KW 
Sbjct: 92  TKSFSLDLDKFGGYSFDYTRDGRMILLGGRKGHISAFDWRTGKLLTELHLRETVRDVKWF 151

Query: 61  HLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS 120
           H    FAVAQK +VY+YDN G E+HCLK   +V  ++FLPYH LL +    GYL + D S
Sbjct: 152 HNHQYFAVAQKKYVYVYDNMGTEIHCLKRHIEVNALDFLPYHLLLTSIGNAGYLKYQDVS 211

Query: 121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV 180
            G++V++     G   V+ QNP+NA   +GH NG VT+WSP+   PL  +L H+  ++ +
Sbjct: 212 TGQLVAEHRTGMGASHVLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDL 271

Query: 181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRG 235
           AVN  G YM T+  DS L++WD+R  +  L+++ T TP   L  S RGLLA   G
Sbjct: 272 AVNRDGRYMVTAGADSLLKVWDLRTYK-ELHSYYTPTPAQRLTLSDRGLLAVGWG 325

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40055|UTP7_YEAST U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP7 PE=1 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 151/241 (62%), Gaps = 1/241 (0%)

Query: 3   KQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
           K  DL L +FG Y + Y KNG HLL+ G++GHVA+ DW +  L  E+ + E  +   +L 
Sbjct: 102 KALDLSLKEFGPYHIKYAKNGTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSATYLQ 161

Query: 62  LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
            E  FAVAQK + +IYD++G ELH LK   +   ++FLPYH+LL TA E G+L + D S 
Sbjct: 162 NEQYFAVAQKKYTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVST 221

Query: 122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
           G++VS+   K G    M QNP+NA + LGH NGTV++WSP++ +PL  LL  +  + S+A
Sbjct: 222 GQLVSELRTKAGPTMAMAQNPWNAVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIA 281

Query: 182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL 241
           ++ +G YMAT+  D  ++IWD+RN +   +     TP  N++ S  GLLA SRG  V   
Sbjct: 282 IDRSGYYMATTGADRSMKIWDIRNFKQLHSVESLPTPGTNVSISDTGLLALSRGPHVTLW 341

Query: 242 K 242
           K
Sbjct: 342 K 342

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 4/147 (2%)

Query: 97  EFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV 156
           +F P   L+ + SE+  +   DT+  + V++FS   G  + +  NP   CI     + TV
Sbjct: 151 KFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTV 210

Query: 157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL-NTFRT 215
            +W   V K L     H  G+  ++ + +G Y+ T++ D  L+I D+  LEG L  T + 
Sbjct: 211 KVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDL--LEGRLIYTLQG 268

Query: 216 RT-PINNLAFSQRGLLATSRGNIVEFL 241
            T P+  ++FS+ G L  S G   + L
Sbjct: 269 HTGPVFTVSFSKGGELFASGGADTQVL 295

Required for ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 97  EFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV 156
           +F P   L+ + SE+  +   DT+  + V++FS   G  + +  NP   CI     + TV
Sbjct: 151 KFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTV 210

Query: 157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL-NTFRT 215
            +W   V K L     H  G+  ++ + +  Y+ T++ D  L+I D+  LEG L  T + 
Sbjct: 211 KVWDVRVNKLLQHYQVHSGGVNCISFHPSDNYLVTASSDGTLKILDL--LEGRLIYTLQG 268

Query: 216 RT-PINNLAFSQRGLLATSRGNIVEFL 241
            T P+  ++FS+ G L  S G   + L
Sbjct: 269 HTGPVFTVSFSKGGELFASGGADTQVL 295

Required for ciliogenesis.

Pongo abelii (taxid: 9601)

>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=3 SV=2

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 107 TASEEGYLSWLDTSIGKIVSDFSAKKGK---LSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           +AS++ Y ++ D   GK +   S + G    +  +  +P       G  +  V +W    
Sbjct: 310 SASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKN 369

Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
           Q   A+   H A ++S+A +  G Y+AT + D ++++WD+R L+  L TF    + PIN+
Sbjct: 370 QTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKN-LKTFANEEKQPINS 428

Query: 222 LAFSQRGLLATSRGNIVEFL 241
           L+F   G      G  V+ L
Sbjct: 429 LSFDMTGTFLGIGGQKVQVL 448

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q2TBP4|POC1A_BOVIN POC1 centriolar protein homolog A OS=Bos taurus GN=POC1A PE=2 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 24/263 (9%)

Query: 16  MNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLET---MFAVAQKD 72
           +N++ +G HLL  G R       WV                ++ +H  +    F  A  D
Sbjct: 67  VNFSPSG-HLLASGSRDKTVRI-WVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDD 124

Query: 73  W---VYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS 129
               V+    Q       + +N V   +F P   L+ +AS++  +   D +  + V  + 
Sbjct: 125 KTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYC 184

Query: 130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM 189
              G ++ +  +P   CI     + TV +W     + L     H A + +++ + +G Y+
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYL 244

Query: 190 ATSAGDSQLRIWDVRNLEGPL--NTFRTRTPINNLAFSQRGLLATSRG------------ 235
            T++ DS L+I D+  +EG L       + P   +AFS+ G    S G            
Sbjct: 245 VTASSDSTLKILDL--MEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNF 302

Query: 236 NIVEFLKPPEINFEPRRKANKAG 258
           +IV++ +   +   P  +A+ +G
Sbjct: 303 DIVDYGEVLRVQRPPATRASSSG 325

Bos taurus (taxid: 9913)

>sp|Q8NBT0|POC1A_HUMAN POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 16  MNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLET---MFAVAQKD 72
           +N++ +G HLL  G R       WV                ++ +H  +    F  A  D
Sbjct: 67  VNFSPSG-HLLASGSRDKTVRI-WVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDD 124

Query: 73  W---VYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS 129
               V+    Q       + +N V   +F P   L+ +AS++  +   D S  + V  + 
Sbjct: 125 KTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYC 184

Query: 130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM 189
              G ++ +  +P   CI     + TV +W     + L     H A +  ++ + +G Y+
Sbjct: 185 EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYL 244

Query: 190 ATSAGDSQLRIWDVRNLEGPL--NTFRTRTPINNLAFSQRGLLATSRGN 236
            T++ DS L+I D+  +EG L       + P   +AFS+ G    S G+
Sbjct: 245 ITASSDSTLKILDL--MEGRLLYTLHGHQGPATTVAFSRTGEYFASGGS 291

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
156544139	521	PREDICTED: WD repeat-containing protein	0.828	0.500	0.600	9e-95
307190227	504	WD repeat-containing protein 46 [Campono	0.825	0.515	0.603	8e-94
322799005	533	hypothetical protein SINV_10220 [Solenop	0.787	0.465	0.608	1e-93
332028317	532	WD repeat-containing protein 46 [Acromyr	0.787	0.466	0.604	7e-93
340711447	509	PREDICTED: LOW QUALITY PROTEIN: WD repea	0.717	0.444	0.628	1e-92
91077832	580	PREDICTED: similar to CG2260 CG2260-PA [	0.765	0.415	0.623	6e-92
350416219	503	PREDICTED: WD repeat-containing protein	0.717	0.449	0.624	9e-92
383848501	532	PREDICTED: WD repeat-containing protein	0.774	0.458	0.610	8e-91
380030043	506	PREDICTED: WD repeat-containing protein	0.787	0.490	0.574	2e-89
328777214	522	PREDICTED: WD repeat-containing protein	0.717	0.432	0.591	3e-89

>gi|156544139|ref|XP_001605963.1| PREDICTED: WD repeat-containing protein 46-like [Nasonia vitripennis]

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 158/263 (60%), Positives = 199/263 (75%), Gaps = 2/263 (0%)

Query: 2   TKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
           TK F+L+L FG Y++NYT+NGRHL++GGK+GHVAAFDWV K LACEMNVME V+D+ WLH
Sbjct: 99  TKFFELNLNFGPYKLNYTRNGRHLVIGGKKGHVAAFDWVTKKLACEMNVMESVHDVCWLH 158

Query: 62  LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
           +ETMFAVAQKDWVYIYDNQGIELHCLK +N+VTR+EFLPYHFLLA+AS  G L+WLD SI
Sbjct: 159 IETMFAVAQKDWVYIYDNQGIELHCLKRMNQVTRLEFLPYHFLLASASALGGLTWLDVSI 218

Query: 122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
           GKI+S + ++ G++ VM QNPYNA +C+G   G V+MWSP   +PLA +LCHK  I S+A
Sbjct: 219 GKIISRYDSQIGRIDVMRQNPYNALLCVGESRGVVSMWSPNSHQPLAKMLCHKQAISSIA 278

Query: 182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL 241
           ++  GTYMATS  D  L++WDVR L GP+     R+P  +L++S RGLLA   GN+VE  
Sbjct: 279 IHPYGTYMATSCPDRSLKVWDVRQLAGPVQNAILRSPAQHLSYSHRGLLAVGMGNVVEVF 338

Query: 242 KPPEINFEP--RRKANKAGGSVQ 262
                + +P  R K+N     VQ
Sbjct: 339 TDTNSDIKPYLRHKSNWGISDVQ 361

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190227|gb|EFN74338.1| WD repeat-containing protein 46 [Camponotus floridanus]

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 158/262 (60%), Positives = 200/262 (76%), Gaps = 2/262 (0%)

Query: 3   KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL 62
           KQF LDLQFG Y   YT+NGRHLLLGGK+GHVAAFDWV K LACE+NVME V+D+ WLHL
Sbjct: 112 KQFKLDLQFGPYCFRYTRNGRHLLLGGKQGHVAAFDWVTKKLACEINVMESVHDVTWLHL 171

Query: 63  ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
           ETMFAVAQKDWVYIYDNQGIELHCLK +N VTR+EFLPYHFLLA+ S++G+++WLD SIG
Sbjct: 172 ETMFAVAQKDWVYIYDNQGIELHCLKRMNGVTRLEFLPYHFLLASGSKDGHMAWLDVSIG 231

Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
           K+V+ +++  G++SVMTQNP NA +C+G   G V+MWSP   KPLA +LCH   I + A+
Sbjct: 232 KLVARYNSNLGRISVMTQNPSNAVLCVGDSKGIVSMWSPNSTKPLAKMLCHHQSILTCAI 291

Query: 183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLK 242
           +  GTYMATS  D  ++IWDVR L GP++     +P + +++SQRGLLA S GN+VE  +
Sbjct: 292 HPHGTYMATSCVDKSVKIWDVRQLTGPVSHMHLCSPAHRMSYSQRGLLALSMGNVVEVFR 351

Query: 243 PPEINFEP--RRKANKAGGSVQ 262
               +F+P  R K  +  G V+
Sbjct: 352 ETSGDFKPYLRHKTARNVGCVK 373

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799005|gb|EFZ20465.1| hypothetical protein SINV_10220 [Solenopsis invicta]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 151/248 (60%), Positives = 194/248 (78%)

Query: 3   KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL 62
           K F LDLQFG Y   YT+NGRHLLLGGK+GHVAAFDWV K LACE+NVME ++D+ WLHL
Sbjct: 113 KHFKLDLQFGPYCFRYTRNGRHLLLGGKQGHVAAFDWVTKKLACEINVMESIHDVTWLHL 172

Query: 63  ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
           ETMFAVAQKDWVYIYDNQGIELHCLK +N +TR+EFLPYHFLLA+ S++G+++WLD SIG
Sbjct: 173 ETMFAVAQKDWVYIYDNQGIELHCLKRMNGITRLEFLPYHFLLASGSKDGHMAWLDISIG 232

Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
           KI++ +++  G++SVMTQNP NA +C+G+  G V+MWSP   KPLA +LCH   I +  V
Sbjct: 233 KIIARYNSNLGRISVMTQNPSNAVLCVGNSKGVVSMWSPNSYKPLAKMLCHAQPIMTCTV 292

Query: 183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLK 242
           +  GTYMATS+ D  ++IWD+R L GP+N    R+P + +++SQRGLLA   GN+VE  +
Sbjct: 293 HPCGTYMATSSIDKSVKIWDIRQLAGPVNNLHLRSPAHRMSYSQRGLLALGMGNVVEVYR 352

Query: 243 PPEINFEP 250
               +F+P
Sbjct: 353 ETSGDFKP 360

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028317|gb|EGI68364.1| WD repeat-containing protein 46 [Acromyrmex echinatior]

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 150/248 (60%), Positives = 195/248 (78%)

Query: 3   KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL 62
           K+F LDLQFG Y   YT+NGRHLLLGGK+GHVAAFDWV K LACE+NVME V+D+ WLHL
Sbjct: 112 KRFKLDLQFGPYCFRYTRNGRHLLLGGKQGHVAAFDWVTKKLACEINVMESVHDVTWLHL 171

Query: 63  ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
           ETMFAVAQKDWVY+YDNQGIELHCLK +N VTR+EFLPYHFLLA+ S++G+++WLD SIG
Sbjct: 172 ETMFAVAQKDWVYVYDNQGIELHCLKRMNGVTRLEFLPYHFLLASGSKDGHMAWLDISIG 231

Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
           K+++ +++  G++SVMTQNP NA +C+G+  G V+MWSP   KPLA +LCH   I +  V
Sbjct: 232 KLIARYNSNLGRISVMTQNPSNAILCVGNSKGVVSMWSPNSHKPLAKMLCHHQSIMTCTV 291

Query: 183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLK 242
           +  GTYMATS+ D  ++IWD+R L GP++    R+P + +++SQRGLLA   GN+VE  +
Sbjct: 292 HPYGTYMATSSLDKSVKIWDIRQLAGPVSHLYLRSPAHRMSYSQRGLLALGMGNVVEVYR 351

Query: 243 PPEINFEP 250
               +F+P
Sbjct: 352 ETSGDFKP 359

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711447|ref|XP_003394287.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 46-like [Bombus terrestris]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 149/237 (62%), Positives = 188/237 (79%)

Query: 3   KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL 62
           K F L+LQFG Y + YT+NGRHL+LGG+RGHVAA DWV K LACEMNVME V+D+ WLH+
Sbjct: 101 KHFTLNLQFGPYYIKYTRNGRHLVLGGRRGHVAALDWVTKNLACEMNVMESVHDVSWLHI 160

Query: 63  ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
           ETMFAVAQK+WVYIYDNQGIELHCLK +N+V ++EFLPYHFLLA+ S EGYLSWLD SIG
Sbjct: 161 ETMFAVAQKEWVYIYDNQGIELHCLKKMNRVNKLEFLPYHFLLASGSNEGYLSWLDVSIG 220

Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
           K V+ F  + GK++VMTQNP NA +C+G   G V+MWSP  + PLA +LCH  GI + AV
Sbjct: 221 KFVTSFHCRLGKIAVMTQNPANAVLCVGDSKGVVSMWSPNSKDPLAKMLCHTRGISACAV 280

Query: 183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVE 239
           +  GTYMATS  +  ++IWD+R L GP++ +R R+PI +L++SQ G +A + GN+VE
Sbjct: 281 HPYGTYMATSCPNKSIKIWDIRQLAGPVHDYRVRSPIYHLSYSQTGKIAMAMGNVVE 337

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077832|ref|XP_971200.1| PREDICTED: similar to CG2260 CG2260-PA [Tribolium castaneum]

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 151/242 (62%), Positives = 192/242 (79%), Gaps = 1/242 (0%)

Query: 2   TKQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWL 60
           TK F+L L  FG YRM YT+NGRHLL+GGK+GHVAAFDWV K L CEMNVME V+DI WL
Sbjct: 145 TKSFELKLADFGPYRMKYTRNGRHLLIGGKKGHVAAFDWVTKKLHCEMNVMESVHDISWL 204

Query: 61  HLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS 120
           H+ETMFAVAQK+WVYIYDNQGIELHC+K LN+VTRMEFLPYHFLLA+ S+ GYLSWLD S
Sbjct: 205 HIETMFAVAQKEWVYIYDNQGIELHCVKRLNRVTRMEFLPYHFLLASCSDSGYLSWLDIS 264

Query: 121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV 180
           IG++VS F+   G+L++++QNP+NA +C+GH  G V+MWSP  + PLA +LCHKA + ++
Sbjct: 265 IGQLVSQFNTNLGRLTMLSQNPWNAVLCVGHAKGVVSMWSPNSKTPLAKMLCHKAPLTAL 324

Query: 181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEF 240
            V+  G ++AT+A + +L+IWDVR L GPL  ++  T  NNL FSQ+ +LA   GN+VE 
Sbjct: 325 HVDPKGQFLATAASNRELKIWDVRKLSGPLQEYKLITAANNLNFSQKNMLALGMGNVVEV 384

Query: 241 LK 242
            +
Sbjct: 385 YR 386

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416219|ref|XP_003490878.1| PREDICTED: WD repeat-containing protein 46-like [Bombus impatiens]

 Score =  342 bits (878), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 148/237 (62%), Positives = 189/237 (79%)

Query: 3   KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL 62
           K F LDLQFG Y + YT+NGRHL+LGG+RGHVAA DWV K LACE+NVME VYD+ WLH+
Sbjct: 101 KHFTLDLQFGPYCIRYTRNGRHLVLGGRRGHVAALDWVTKNLACEINVMESVYDVSWLHI 160

Query: 63  ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
           ETMFAVAQK+WV+IYDNQGIE+HCLK L++V ++EFLPYHFLLA  S EGYLSWLD SIG
Sbjct: 161 ETMFAVAQKEWVFIYDNQGIEIHCLKKLHRVNKLEFLPYHFLLAAGSNEGYLSWLDVSIG 220

Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
           K V+ F++K GK++VMTQNP NA +C+G   G V+MWSP  + PLA +LCH  GI + A+
Sbjct: 221 KFVASFNSKLGKIAVMTQNPTNAVLCVGDSKGVVSMWSPNSKDPLAKMLCHTQGISACAI 280

Query: 183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVE 239
           +  GTYMATS  +  ++IWD+R L GP++ +R R+PI +L++SQ G +A + GN+VE
Sbjct: 281 HPYGTYMATSCPNRFIKIWDIRQLAGPVHNYRVRSPIYHLSYSQTGQIAMAMGNVVE 337

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848501|ref|XP_003699888.1| PREDICTED: WD repeat-containing protein 46-like [Megachile rotundata]

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 149/244 (61%), Positives = 187/244 (76%)

Query: 2   TKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
           TK F L+LQFG Y + YT+NGRHLLLGG++GHVAAFDWV K LACEMNVME V+DI WLH
Sbjct: 105 TKHFTLNLQFGPYYIKYTRNGRHLLLGGRQGHVAAFDWVTKKLACEMNVMESVHDISWLH 164

Query: 62  LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
           +ETM+AVAQKDWVYIYDN GIELHCLK + KV ++EFLPYHFLLA+ S +GYLSWLD SI
Sbjct: 165 VETMYAVAQKDWVYIYDNVGIELHCLKSMYKVNKLEFLPYHFLLASGSRQGYLSWLDISI 224

Query: 122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
           GK +S F++K G + VMTQNP NA +C+G   G V+MWSP   KPLA +LCH   + +  
Sbjct: 225 GKFISTFNSKLGNIVVMTQNPSNAVLCVGDIKGVVSMWSPNSTKPLAKMLCHTQPVSACT 284

Query: 182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL 241
           V+  GTYMAT      +++WD+R L GP++ + TR+ ++ L++SQRG LA S GN+VE  
Sbjct: 285 VHPHGTYMATGCAGGYVKVWDIRQLAGPVHNYHTRSAVHRLSYSQRGHLAMSMGNVVEIY 344

Query: 242 KPPE 245
           +P E
Sbjct: 345 RPSE 348

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030043|ref|XP_003698668.1| PREDICTED: WD repeat-containing protein 46-like [Apis florea]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 143/249 (57%), Positives = 190/249 (76%)

Query: 2   TKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
            K F L+L FG Y + YT+NGRHL+LGGK+GHVAA DW+ K LACE+NVME V+D+ WLH
Sbjct: 106 AKHFTLNLDFGPYYIKYTRNGRHLVLGGKKGHVAALDWITKKLACEINVMESVHDVSWLH 165

Query: 62  LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
           +ETMFAVAQK+WV+IYDNQGIELHCLK++NK+ ++EFLPYHFLLA+ S +GYL+WLD SI
Sbjct: 166 IETMFAVAQKEWVFIYDNQGIELHCLKLMNKINKLEFLPYHFLLASGSRDGYLAWLDISI 225

Query: 122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
           GK V+ F++K GK++VMTQNP NA +C+G   G V+MWSP  + PL  +LCH   + + A
Sbjct: 226 GKFVNSFNSKLGKIAVMTQNPSNALLCVGDSKGIVSMWSPNSKDPLVKMLCHTQAVAACA 285

Query: 182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL 241
           V+  GTYMATS  D  ++IWD+R L GP++ +R R P+ +L++SQ G LA + GN+VE  
Sbjct: 286 VHPYGTYMATSCQDKFVKIWDIRQLAGPVHNYRVRAPVQHLSYSQCGQLALAMGNVVEVY 345

Query: 242 KPPEINFEP 250
           +      +P
Sbjct: 346 RSLANEIKP 354

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777214|ref|XP_001120711.2| PREDICTED: WD repeat-containing protein 46-like [Apis mellifera]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 142/240 (59%), Positives = 188/240 (78%)

Query: 3   KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL 62
           K F L+L FG Y + YT+NGRHL+LGGK+GHVAA DW+ K LACE+NVME V+D+ WLH+
Sbjct: 119 KHFTLNLDFGPYYIKYTRNGRHLVLGGKKGHVAALDWITKKLACEINVMESVHDLSWLHI 178

Query: 63  ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
           ETMFAVAQK+WV+IYDNQGIELHCLK++NKV ++EFLPYHFLLA+ S +GYL+WLD SIG
Sbjct: 179 ETMFAVAQKEWVFIYDNQGIELHCLKLMNKVNKLEFLPYHFLLASGSRDGYLAWLDISIG 238

Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
           K ++ F+++ GK++VMTQNP NA +C+G   G V+MWSP  + PL  +LCH   + + AV
Sbjct: 239 KFINSFNSRLGKIAVMTQNPSNALLCVGDSKGVVSMWSPNSKDPLVKMLCHTQAVAACAV 298

Query: 183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLK 242
           +  GTYMATS  D  ++IWD+R L GPL+ +R R P+ +L++SQ G LA + GN+VE  +
Sbjct: 299 HPYGTYMATSCQDKFVKIWDIRQLAGPLHNYRVRAPVQHLSYSQCGQLALAMGNVVEVYR 358

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
FB|FBgn0030000	609	CG2260 [Drosophila melanogaste	0.752	0.389	0.497	4.1e-75
MGI|MGI:1931871	622	Wdr46 "WD repeat domain 46" [M	0.749	0.379	0.561	1.6e-71
UNIPROTKB|O15213	610	WDR46 "WD repeat-containing pr	0.749	0.386	0.561	1.8e-69
WB|WBGene00009211	580	wdr-46 [Caenorhabditis elegans	0.761	0.413	0.442	2.9e-58
UNIPROTKB|G4NCA1	556	MGG_01100 "Small nucleolar rib	0.736	0.417	0.461	1.9e-53
POMBASE|SPAC959.03c	520	SPAC959.03c "U3 snoRNP-associa	0.739	0.448	0.425	2e-53
SGD|S000000884	554	UTP7 "Nucleolar protein" [Sacc	0.828	0.471	0.387	2.9e-50
CGD|CAL0005357	527	orf19.4835 [Candida albicans (	0.831	0.497	0.389	8.5e-49
UNIPROTKB|Q5APD0	527	CaO19.12298 "Putative uncharac	0.831	0.497	0.389	8.5e-49
ASPGD|ASPL0000002969	535	AN6265 [Emericella nidulans (t	0.746	0.439	0.409	4.7e-48

FB|FBgn0030000 CG2260 [Drosophila melanogaster (taxid:7227)]

 Score = 659 (237.0 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 119/239 (49%), Positives = 159/239 (66%)

Query:     3 KQFDLDLQFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLHL 62
             K F+L+++FG YRM YTKN            VAAFDWV K L CE N ME V D++WLH+
Sbjct:   166 KHFNLNMEFGPYRMRYTKNGRHLLLGGKRGHVAAFDWVTKRLHCEFNAMESVEDVQWLHV 225

Query:    63 ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
              TM+AVAQK WVY YD +G ELHC+K LN+V R++FLPYHFLLA  +  GY SWLD SIG
Sbjct:   226 PTMYAVAQKSWVYFYDKKGTELHCIKRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIG 285

Query:   123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
             ++V +F+   G + ++  NP N  +C+G   G V+MWSP V++PLA LLCH   + ++AV
Sbjct:   286 ELVGNFNTGLGDIRMLRHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAV 345

Query:   183 NHTGTYMATSAGDSQLRIWDVRNL--EGPLNTFRTRTPINNLAFSQRGLLATSRGNIVE 239
                G Y+ T+  D  +++WD+R L  + PL  F+ R P N L  SQRG+LA S+G  +E
Sbjct:   346 EPKGQYLVTAGLDRAVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQGTYLE 404

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:1931871 Wdr46 "WD repeat domain 46" [Mus musculus (taxid:10090)]

 Score = 700 (251.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 133/237 (56%), Positives = 173/237 (72%)

Query:     3 KQFDLDL-QFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
             K FDL+L QFG YR+NY++             VAA DWV K L CE+NVME V DI +LH
Sbjct:   186 KHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMCEINVMEAVRDIHFLH 245

Query:    62 LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
              E + AVAQ  W+YIYDNQGIELHC++  ++VTR+EFLP+HFLLAT SE G+L++LD S+
Sbjct:   246 SEALLAVAQNRWLYIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATTSETGFLTYLDVSV 305

Query:   122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
             GKIV+  + + G+LSVM QNPYNA I LGH NGTV++WSP V++PLA +LCH+ G+++VA
Sbjct:   306 GKIVTALNVRAGRLSVMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVA 365

Query:   182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIV 238
             V+ TGTYMATS  D QL+I+D+R    PL++        +LAFSQRGLL    G++V
Sbjct:   366 VDSTGTYMATSGLDHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVV 422

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O15213 WDR46 "WD repeat-containing protein 46" [Homo sapiens (taxid:9606)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 133/237 (56%), Positives = 176/237 (74%)

Query:     3 KQFDLDL-QFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
             K FDL+L QFG YR+NY++             VAA DWV K L CE+NVME V DI++LH
Sbjct:   187 KHFDLNLRQFGPYRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFLH 246

Query:    62 LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
              E + AVAQ  W++IYDNQGIELHC++  ++VTR+EFLP+HFLLATASE G+L++LD S+
Sbjct:   247 SEALLAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSV 306

Query:   122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
             GKIV+  +A+ G+L VM+QNPYNA I LGH NGTV++WSP +++PLA +LCH+ G+++VA
Sbjct:   307 GKIVAALNARAGRLDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVA 366

Query:   182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIV 238
             V+ TGTYMATS  D QL+I+D+R    PL+T        +LAFSQRGLL    G++V
Sbjct:   367 VDSTGTYMATSGLDHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVV 423

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00009211 wdr-46 [Caenorhabditis elegans (taxid:6239)]

 Score = 544 (196.6 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 107/242 (44%), Positives = 152/242 (62%)

Query:     2 TKQFDLDL-QFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWL 60
             TK F+L L +FG Y ++YT N            +AA DW  K L  E +VME+V D+K+L
Sbjct:   159 TKHFELKLPRFGPYHIDYTDNGRHLVIGGRKGHLAALDWQTKHLHFEQSVMEKVSDVKFL 218

Query:    61 HLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS 120
             H E   AVAQK++ Y+YDN G ELHCLK +    R+EFLP+HFLL  +S   +L+++D S
Sbjct:   219 HTENFIAVAQKNYTYVYDNLGTELHCLKTMYDTARLEFLPHHFLLVGSSRNSFLNYVDVS 278

Query:   121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV 180
             +GK V+ F+ K G L VM QNP NA I  GH NGTV++WSP  ++PL  +L H + ++ +
Sbjct:   279 VGKQVASFATKSGTLDVMCQNPANAIIHTGHTNGTVSLWSPNSKEPLVKILTHLSAVKGI 338

Query:   181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEF 240
             AV+  G YMAT+  D + RIWDVR     L+ +     ++N+A SQ+  +A + GN V+ 
Sbjct:   339 AVDDQGNYMATTGLDRKCRIWDVRMFR-QLHAYSLPFGVSNVAISQKMNVACAVGNHVQV 397

Query:   241 LK 242
              +
Sbjct:   398 FR 399

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|G4NCA1 MGG_01100 "Small nucleolar ribonucleoprotein complex subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 108/234 (46%), Positives = 145/234 (61%)

Query:     3 KQFDLDLQ-FGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
             K+FDL L   G Y  +YT+N            VA FDW    L CE+ + E V D+KWLH
Sbjct:   127 KRFDLSLDGLGPYLCDYTRNGRELLIGGRKGHVATFDWREGKLGCEIQLGETVRDVKWLH 186

Query:    62 LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
                 FAVAQK  VY+YD  G+ELH L+    VT MEFLPYHFLL TAS+ G L + DTS 
Sbjct:   187 NNQYFAVAQKKTVYLYDRNGVELHNLRKHINVTHMEFLPYHFLLCTASDTGMLKYQDTST 246

Query:   122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
             G+IVS+ ++K G    + QNP+NA + +GH NGTVT+WSP    PL  LL HK  ++S+A
Sbjct:   247 GQIVSEVASKLGPTQSLVQNPWNAILHMGHNNGTVTLWSPNSSDPLVKLLAHKGPVRSLA 306

Query:   182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRG 235
             ++  G YM ++  DS++ +WD+R  +  +N + TRTP +++A S  GL A   G
Sbjct:   307 IDREGRYMVSTGQDSRMAVWDIRMFK-EVNNYFTRTPASSVAISDSGLTAVGWG 359

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC959.03c SPAC959.03c "U3 snoRNP-associated protein Utp7 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 517 (187.1 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
 Identities = 100/235 (42%), Positives = 140/235 (59%)

Query:     2 TKQFDLDL-QFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWL 60
             TK F LDL +FG Y  +YT++            ++AFDW    L  E+++ E V D+KW 
Sbjct:    92 TKSFSLDLDKFGGYSFDYTRDGRMILLGGRKGHISAFDWRTGKLLTELHLRETVRDVKWF 151

Query:    61 HLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS 120
             H    FAVAQK +VY+YDN G E+HCLK   +V  ++FLPYH LL +    GYL + D S
Sbjct:   152 HNHQYFAVAQKKYVYVYDNMGTEIHCLKRHIEVNALDFLPYHLLLTSIGNAGYLKYQDVS 211

Query:   121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV 180
              G++V++     G   V+ QNP+NA   +GH NG VT+WSP+   PL  +L H+  ++ +
Sbjct:   212 TGQLVAEHRTGMGASHVLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDL 271

Query:   181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRG 235
             AVN  G YM T+  DS L++WD+R  +  L+++ T TP   L  S RGLLA   G
Sbjct:   272 AVNRDGRYMVTAGADSLLKVWDLRTYK-ELHSYYTPTPAQRLTLSDRGLLAVGWG 325

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0030490 "maturation of SSU-rRNA" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

SGD|S000000884 UTP7 "Nucleolar protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 492 (178.3 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 102/263 (38%), Positives = 150/263 (57%)

Query:     3 KQFDLDL-QFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
             K  DL L +FG Y + Y KN            VA+ DW +  L  E+ + E  +   +L 
Sbjct:   102 KALDLSLKEFGPYHIKYAKNGTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSATYLQ 161

Query:    62 LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
              E  FAVAQK + +IYD++G ELH LK   +   ++FLPYH+LL TA E G+L + D S 
Sbjct:   162 NEQYFAVAQKKYTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVST 221

Query:   122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
             G++VS+   K G    M QNP+NA + LGH NGTV++WSP++ +PL  LL  +  + S+A
Sbjct:   222 GQLVSELRTKAGPTMAMAQNPWNAVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIA 281

Query:   182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL 241
             ++ +G YMAT+  D  ++IWD+RN +   +     TP  N++ S  GLLA SRG  V   
Sbjct:   282 IDRSGYYMATTGADRSMKIWDIRNFKQLHSVESLPTPGTNVSISDTGLLALSRGPHVTLW 341

Query:   242 KPP-EINFEPRRKANKAGGSVQR 263
             K   +++ + +      GG+  R
Sbjct:   342 KDALKLSGDSKPCFGSMGGNPHR 364

GO:0030686 "90S preribosome" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0032040 "small-subunit processome" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

CGD|CAL0005357 orf19.4835 [Candida albicans (taxid:5476)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 104/267 (38%), Positives = 156/267 (58%)

Query:     3 KQFDLDL-QFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
             K+F+L L +FG Y ++Y++             VA+ DW +  L CE+++ E V+ +K+LH
Sbjct:    96 KKFELKLPEFGPYTIDYSRTGRDLLLGGKKGHVASIDWRKGKLGCELHLNETVHAVKYLH 155

Query:    62 LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
              +  FAVAQK + +IYDNQG ELH LK   + T ++FLPYHFLL TA   G+L + D S 
Sbjct:   156 NDQYFAVAQKKYTFIYDNQGTELHRLKQHIEATLLDFLPYHFLLVTAGHTGFLKYHDVST 215

Query:   122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
             G++VS+   K G    M  NP+NA  CLGH NGTV+MW+P + +PL  L   +  I+ +A
Sbjct:   216 GQLVSELRTKLGPTQAMKHNPWNAVTCLGHGNGTVSMWAPNMPEPLVKLQVARGPIRDLA 275

Query:   182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL 241
             ++  G YMA +A D  L+IWD+R  +  ++ + ++TP ++L  S  GLL+   G  V   
Sbjct:   276 IDREGKYMAVAAADKTLKIWDIRKFK-EVDNYYSQTPASSLDISDTGLLSVGWGPHVTIW 334

Query:   242 KP---PEINFEPRRKANKAGGSVQRAK 265
             K     +   EP       G  +++AK
Sbjct:   335 KDILKGKHQSEPYMNHLIPGSKIEKAK 361

GO:0003674 "molecular_function" evidence=ND

GO:0030686 "90S preribosome" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q5APD0 CaO19.12298 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 104/267 (38%), Positives = 156/267 (58%)

Query:     3 KQFDLDL-QFGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
             K+F+L L +FG Y ++Y++             VA+ DW +  L CE+++ E V+ +K+LH
Sbjct:    96 KKFELKLPEFGPYTIDYSRTGRDLLLGGKKGHVASIDWRKGKLGCELHLNETVHAVKYLH 155

Query:    62 LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
              +  FAVAQK + +IYDNQG ELH LK   + T ++FLPYHFLL TA   G+L + D S 
Sbjct:   156 NDQYFAVAQKKYTFIYDNQGTELHRLKQHIEATLLDFLPYHFLLVTAGHTGFLKYHDVST 215

Query:   122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
             G++VS+   K G    M  NP+NA  CLGH NGTV+MW+P + +PL  L   +  I+ +A
Sbjct:   216 GQLVSELRTKLGPTQAMKHNPWNAVTCLGHGNGTVSMWAPNMPEPLVKLQVARGPIRDLA 275

Query:   182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL 241
             ++  G YMA +A D  L+IWD+R  +  ++ + ++TP ++L  S  GLL+   G  V   
Sbjct:   276 IDREGKYMAVAAADKTLKIWDIRKFK-EVDNYYSQTPASSLDISDTGLLSVGWGPHVTIW 334

Query:   242 KP---PEINFEPRRKANKAGGSVQRAK 265
             K     +   EP       G  +++AK
Sbjct:   335 KDILKGKHQSEPYMNHLIPGSKIEKAK 361

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000002969 AN6265 [Emericella nidulans (taxid:162425)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 97/237 (40%), Positives = 146/237 (61%)

Query:     3 KQFDLDLQ-FGIYRMNYTKNXXXXXXXXXXXXVAAFDWVRKTLACEMNVMEEVYDIKWLH 61
             K+F+L L+ FG YR +YT+N            +A  DW    L CE+++ E V D +WLH
Sbjct:   105 KKFELKLEDFGPYRADYTRNGRELLLAGRKGHIATMDWRNGKLGCELHLRETVRDARWLH 164

Query:    62 LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI 121
                 FAVAQK  VYIYD+QG+ELH L  + +   +EFLPYHFLLA+A   G+L + DTS 
Sbjct:   165 NNQYFAVAQKKSVYIYDSQGVELHNLDRIVEPCFLEFLPYHFLLASAQMSGHLKYTDTST 224

Query:   122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
             G++V++   K G  + + QNP+NA + +GH+NGTVT+WSP  Q PL   L H+  ++S+A
Sbjct:   225 GQLVAEIPTKVGAPTSLAQNPWNAIMHVGHQNGTVTLWSPNTQTPLVKALVHRGPVRSMA 284

Query:   182 VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIV 238
             ++  G YM ++  D ++++WD+R +   ++++    P   ++ S RGL A   G  V
Sbjct:   285 IDRQGRYMVSTGQDLKMQVWDIR-MYREVHSYSCHQPGAAVSISDRGLTAVGWGTQV 340

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z0H1	WDR46_MOUSE	No assigned EC number	0.6008	0.7523	0.3810	yes	N/A
O15213	WDR46_HUMAN	No assigned EC number	0.5966	0.7523	0.3885	yes	N/A
Q5TJE7	WDR46_CANFA	No assigned EC number	0.5924	0.7523	0.3872	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	315
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-06

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 46/227 (20%), Positives = 98/227 (43%), Gaps = 6/227 (2%)

Query: 12  GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME-EVYDIKWL-HLETMFAVA 69
           G+  + ++ +G+ L  G   G +  +D     L   +      V D+        + + +
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS 70

Query: 70  QKDWVYIYD-NQGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD 127
               + ++D   G  +  L    + V+ + F P   +L+++S +  +   D   GK ++ 
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130

Query: 128 FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT 187
                  ++ +  +P    +    ++GT+ +W     K +A+L  H   + SVA +  G 
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190

Query: 188 YMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATS 233
            + +S+ D  +++WD+   +  L T R     +N++AFS  G L  S
Sbjct: 191 KLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDGYLLAS 236

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 6/170 (3%)

Query: 74  VYIYD-NQGIELHCLKV-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK 131
           + ++D   G  L  LK     V  +        LA+ S +  +   D   G+ V   +  
Sbjct: 33  IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92

Query: 132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAT 191
              +S +  +P    +    R+ T+ +W     K L +L  H   + SVA +  GT++A+
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 192 SAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG--LLATSRGNIV 238
           S+ D  +++WD+R  +  + T    T  +N++AFS  G  LL++S    +
Sbjct: 153 SSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 98  FLPYHFLLATASEEGYLS-WLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV 156
           F P    +A++S++G +  W D   GK V+  +   G+++ +  +P    +     +GT+
Sbjct: 143 FSPDGTFVASSSQDGTIKLW-DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR-T 215
            +W  +  K L +L  H+ G+ SVA +  G  +A+ + D  +R+WD+R  E  + T    
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGH 260

Query: 216 RTPINNLAFSQRG 228
              + +LA+S  G
Sbjct: 261 TNSVTSLAWSPDG 273

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 91  NKVTRMEFLPYHFLLATASEEG-YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL 149
             VT + F P   LLAT S +G    W D   G+++       G +  +  +     +  
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVW-DLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP 209
           G  + T+ +W     + + +L  H + + SVA +  G  +++S+ D  +++WDV   +  
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-C 127

Query: 210 LNTFRTRT-PINNLAFSQRGLLATS 233
           L T R  T  +N++AFS  G    S
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVAS 152

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 50/276 (18%), Positives = 103/276 (37%), Gaps = 15/276 (5%)

Query: 19  TKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM----EEVYDIKWLHLETMFAVA--QKD 72
           + +G  +LL           W   T    +  +    E V  + +     + A       
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 73  WVYIYD-NQGIELHCLKVLNK-VTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFS 129
            + ++D   G  L  L      V+ + F P    L+A+ S +G +   D S GK++    
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238

Query: 130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWS-PTVQKPLASLLCHKAGIQSVAVNHTGTY 188
           +      V + +P  + +  G  +GT+ +W   +    L +L  H + + SVA +  G  
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298

Query: 189 MATSAGDSQLRIWDVRNLEGPLNTFRT--RTPINNLAFSQRG---LLATSRGNIVEFLKP 243
           +A+ + D  +R+WD+   +   +        P+++L+FS  G   +   S    +     
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Query: 244 PEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFI 279
                    + +    SV  +   ++V   +    +
Sbjct: 359 RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV 394

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 13/200 (6%)

Query: 18  YTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM----EEVYDIKWLHLETMFAVAQKD- 72
           ++ +G  L  G   G +  +D   ++ +  +  +      V  + +     + A    D 
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306

Query: 73  WVYIYDNQGIELHCLKVL----NKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSD 127
            V ++D +  +L     L      V+ + F P    L++  S++G +   D   GK +  
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Query: 128 FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT 187
                  LSV   +P    +  G  +GTV +W  +    L +L  H + + S+  +  G 
Sbjct: 367 LEGHSNVLSVSF-SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425

Query: 188 YMATSAGDSQLRIWDVRNLE 207
            +A+ + D+ +R+WD++   
Sbjct: 426 SLASGSSDNTIRLWDLKTSL 445

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 7/154 (4%)

Query: 54  VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
           V  + +    T  A + +D  + ++D +  +  C+  L     +V  + F P    L ++
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
           S +G +   D S GK +      +  ++ +  +P    +  G  +GT+ +W     + + 
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 169 SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
           +L  H   + S+A +  G  +A+ + D  +RIWD
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 74  VYIYDNQGIELHCLKVLN----KVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS 129
           + ++D +      L+ L+     V  + F P   LLA+ S +G +   D   GK++S  +
Sbjct: 265 IRLWDLRS-SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323

Query: 130 AK--KGKLSVMTQNPYNACICLG-HRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTG 186
            K  +G +S ++ +P  + +  G   +GT+ +W     KPL +L  H   + SV+ +  G
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDG 382

Query: 187 TYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG--LLATSRGNIVEFLKPP 244
             +++ + D  +R+WD+       N     + + +L FS  G  L + S  N +      
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 25/202 (12%)

Query: 119 TSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NGTVTMWSPTVQKPLASLLCHKAGI 177
           ++ GK++         ++ +  +P    +  G   +GT+ +W     KPL++L  H   +
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201

Query: 178 QSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG--LLATSR 234
            S+A +  G  +  S   D  +R+WD+   +   +T    +     +FS  G  L + S 
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS 261

Query: 235 GNIVEFLKPP-----------------EINFEPRRKANKAGGSVQRAKVKKIVRETAKKD 277
              +                        + F P  K   +G S    ++  +        
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL----ETGK 317

Query: 278 FIQSTKALGVKEIVKSLTGAPD 299
            + S    G +  V SL+ +PD
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPD 339

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
           + L +L  H   + SVA +  G Y+A+ + D  +++WD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
           K L +L  H   + SVA +  G  +A+ + D  +R+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0279|consensus	315		100.0
KOG0284|consensus	464		100.0
KOG0263|consensus	707		100.0
KOG0279|consensus	315		100.0
KOG0286|consensus	343		100.0
KOG0273|consensus	524		100.0
KOG0263|consensus	707		100.0
KOG0291|consensus	893		100.0
KOG0645|consensus	312		100.0
KOG0295|consensus	406		100.0
KOG0315|consensus	311		100.0
KOG0285|consensus	460		100.0
KOG0273|consensus	524		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266|consensus	456		100.0
KOG0265|consensus	338		100.0
KOG0284|consensus	464		100.0
KOG0315|consensus	311		100.0
KOG0291|consensus	893		100.0
KOG0319|consensus	775		100.0
KOG0643|consensus	327		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0268|consensus	433		100.0
KOG0282|consensus	503		100.0
KOG0296|consensus	399		100.0
KOG0318|consensus	603		100.0
KOG0295|consensus	406		100.0
KOG0266|consensus	456		100.0
KOG0318|consensus	603		100.0
KOG0276|consensus	794		100.0
KOG1407|consensus	313		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG1272|consensus	545		100.0
KOG0306|consensus	888		100.0
KOG0289|consensus	506		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277|consensus	311		100.0
KOG0319|consensus	775		100.0
KOG0275|consensus	508		100.0
KOG0276|consensus	794		100.0
KOG0293|consensus	519		99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0283|consensus	712		99.98
KOG0316|consensus	307		99.98
KOG0277|consensus	311		99.97
KOG0296|consensus	399		99.97
KOG0265|consensus	338		99.97
KOG0292|consensus	1202		99.97
PTZ00421	493	coronin; Provisional	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0645|consensus	312		99.97
KOG0293|consensus	519		99.97
KOG0281|consensus	499		99.97
KOG1407|consensus	313		99.97
KOG0310|consensus	487		99.97
KOG0306|consensus	888		99.97
KOG1446|consensus	311		99.97
KOG0772|consensus	641		99.97
KOG0310|consensus	487		99.97
KOG0305|consensus	484		99.97
KOG0285|consensus	460		99.97
KOG0973|consensus	942		99.97
KOG0640|consensus	430		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0305|consensus	484		99.97
KOG0278|consensus	334		99.97
KOG0292|consensus	1202		99.97
KOG0281|consensus	499		99.97
KOG0313|consensus	423		99.97
KOG0647|consensus	347		99.97
KOG0973|consensus	942		99.96
KOG2096|consensus	420		99.96
KOG0316|consensus	307		99.96
KOG0264|consensus	422		99.96
KOG0282|consensus	503		99.96
KOG0313|consensus	423		99.96
KOG0288|consensus	459		99.96
KOG0641|consensus	350		99.96
KOG0643|consensus	327		99.96
KOG0275|consensus	508		99.96
KOG0639|consensus	705		99.96
KOG0278|consensus	334		99.96
KOG2055|consensus	514		99.96
KOG1036|consensus	323		99.96
KOG0641|consensus	350		99.96
KOG0274|consensus	537		99.96
KOG1446|consensus	311		99.96
KOG0300|consensus	481		99.96
KOG0294|consensus	362		99.96
KOG0308|consensus	735		99.95
KOG0299|consensus	479		99.95
KOG0288|consensus	459		99.95
KOG1332|consensus	299		99.95
KOG0772|consensus	641		99.95
KOG0289|consensus	506		99.95
KOG0308|consensus	735		99.95
KOG0646|consensus	476		99.95
KOG1539|consensus	910		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0299|consensus	479		99.95
KOG1274|consensus	933		99.95
KOG0274|consensus	537		99.95
KOG0302|consensus	440		99.95
KOG1273|consensus	405		99.94
KOG0267|consensus	825		99.94
KOG0283|consensus	712		99.94
KOG0269|consensus	839		99.94
KOG0269|consensus	839		99.94
KOG4283|consensus	397		99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0294|consensus	362		99.93
KOG0301|consensus	745		99.93
KOG0640|consensus	430		99.93
KOG1408|consensus	1080		99.93
KOG2055|consensus	514		99.93
KOG1036|consensus	323		99.93
KOG2445|consensus	361		99.92
KOG0268|consensus	433		99.92
KOG0646|consensus	476		99.92
KOG0264|consensus	422		99.92
KOG2106|consensus	626		99.92
KOG0301|consensus	745		99.92
KOG1274|consensus	933		99.92
KOG1408|consensus	1080		99.92
KOG2048|consensus	691		99.92
KOG2919|consensus	406		99.92
KOG0267|consensus	825		99.91
KOG0639|consensus	705		99.91
KOG1332|consensus	299		99.91
KOG1273|consensus	405		99.91
KOG0650|consensus	733		99.91
KOG2106|consensus	626		99.91
KOG4328|consensus	498		99.91
KOG2919|consensus	406		99.91
KOG0270|consensus	463		99.9
KOG4378|consensus	673		99.9
KOG1539|consensus	910		99.9
KOG0647|consensus	347		99.9
KOG1063|consensus	764		99.9
KOG2048|consensus	691		99.9
KOG0649|consensus	325		99.9
KOG0307|consensus	1049		99.89
KOG0270|consensus	463		99.89
KOG1538|consensus	1081		99.88
KOG0300|consensus	481		99.88
KOG0302|consensus	440		99.88
KOG0290|consensus	364		99.88
KOG2096|consensus	420		99.88
KOG4283|consensus	397		99.87
KOG0303|consensus	472		99.87
KOG1524|consensus	737		99.86
KOG1007|consensus	370		99.86
KOG4328|consensus	498		99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG1009|consensus	434		99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG1538|consensus	1081		99.85
KOG0321|consensus	720		99.85
KOG0321|consensus	720		99.85
KOG2110|consensus	391		99.84
KOG4378|consensus	673		99.84
KOG0307|consensus	1049		99.84
KOG1523|consensus	361		99.84
KOG1034|consensus	385		99.84
KOG1587|consensus	555		99.84
KOG2445|consensus	361		99.83
KOG1063|consensus	764		99.83
KOG0322|consensus	323		99.83
KOG0642|consensus	577		99.83
KOG1007|consensus	370		99.82
KOG0650|consensus	733		99.82
KOG1009|consensus	434		99.82
KOG0303|consensus	472		99.82
KOG0771|consensus	398		99.82
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG1517|consensus	1387		99.81
KOG1524|consensus	737		99.81
KOG1587|consensus	555		99.81
KOG2110|consensus	391		99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1034|consensus	385		99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
PRK05137	435	tolB translocation protein TolB; Provisional	99.79
KOG1188|consensus	376		99.79
PRK04922	433	tolB translocation protein TolB; Provisional	99.79
KOG1445|consensus	1012		99.79
KOG2394|consensus	636		99.78
KOG2139|consensus	445		99.78
KOG1445|consensus	1012		99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.77
KOG1963|consensus	792		99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.77
KOG4497|consensus	447		99.77
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
KOG2111|consensus	346		99.76
KOG4227|consensus	609		99.76
KOG2321|consensus	703		99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.76
PRK02889	427	tolB translocation protein TolB; Provisional	99.74
KOG4497|consensus	447		99.74
PRK04922	433	tolB translocation protein TolB; Provisional	99.73
KOG2111|consensus	346		99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
KOG3881|consensus	412		99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
KOG0771|consensus	398		99.71
KOG1272|consensus	545		99.71
KOG1523|consensus	361		99.71
PRK00178	430	tolB translocation protein TolB; Provisional	99.71
KOG2394|consensus	636		99.71
PRK04792	448	tolB translocation protein TolB; Provisional	99.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.7
KOG0322|consensus	323		99.7
PRK01029	428	tolB translocation protein TolB; Provisional	99.69
KOG0644|consensus	1113		99.69
KOG1310|consensus	758		99.69
KOG0642|consensus	577		99.69
KOG0290|consensus	364		99.69
KOG1188|consensus	376		99.68
KOG1517|consensus	1387		99.67
KOG2314|consensus	698		99.67
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.67
KOG1963|consensus	792		99.67
PRK01029	428	tolB translocation protein TolB; Provisional	99.67
KOG3881|consensus	412		99.66
KOG2139|consensus	445		99.66
KOG1310|consensus	758		99.65
PRK00178	430	tolB translocation protein TolB; Provisional	99.64
KOG4227|consensus	609		99.63
KOG1240|consensus	1431		99.63
KOG2321|consensus	703		99.63
KOG0649|consensus	325		99.63
PRK04792	448	tolB translocation protein TolB; Provisional	99.62
COG4946	668	Uncharacterized protein related to the periplasmic	99.62
KOG4547|consensus	541		99.61
KOG0280|consensus	339		99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.59
KOG1334|consensus	559		99.59
KOG0974|consensus	967		99.59
PRK04043	419	tolB translocation protein TolB; Provisional	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.57
KOG2314|consensus	698		99.56
KOG1354|consensus	433		99.55
KOG2315|consensus	566		99.53
KOG2315|consensus	566		99.52
KOG1064|consensus	2439		99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.5
KOG0644|consensus	1113		99.49
KOG0974|consensus	967		99.49
KOG1354|consensus	433		99.48
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.47
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.47
PRK04043	419	tolB translocation protein TolB; Provisional	99.46
KOG1240|consensus	1431		99.46
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.41
KOG2041|consensus	1189		99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.4
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.39
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.39
KOG4547|consensus	541		99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
COG4946	668	Uncharacterized protein related to the periplasmic	99.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.37
KOG2041|consensus	1189		99.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.32
KOG0309|consensus	1081		99.31
KOG4532|consensus	344		99.31
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.29
KOG3914|consensus	390		99.28
KOG2695|consensus	425		99.27
KOG0280|consensus	339		99.25
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.24
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.22
KOG3914|consensus	390		99.22
KOG1334|consensus	559		99.21
KOG4190|consensus	1034		99.18
KOG1409|consensus	404		99.18
KOG1920|consensus	1265		99.15
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.12
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.12
KOG1832|consensus	1516		99.11
KOG1064|consensus	2439		99.11
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.1
KOG2066|consensus	846		99.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.08
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.05
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.04
KOG1409|consensus	404		99.03
PRK02888	635	nitrous-oxide reductase; Validated	99.0
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	99.0
KOG4532|consensus	344		98.99
KOG2695|consensus	425		98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.97
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.95
KOG0309|consensus	1081		98.95
KOG1912|consensus	1062		98.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.89
PRK02888	635	nitrous-oxide reductase; Validated	98.89
KOG1275|consensus	1118		98.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
KOG4714|consensus	319		98.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.85
KOG2066|consensus	846		98.84
KOG4714|consensus	319		98.83
KOG4190|consensus	1034		98.81
KOG0882|consensus	558		98.79
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.79
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.79
KOG2114|consensus	933		98.76
KOG3617|consensus	1416		98.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.73
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.72
KOG1912|consensus	1062		98.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.71
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.69
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.69
KOG1275|consensus	1118		98.68
KOG1920|consensus	1265		98.67
KOG1645|consensus	463		98.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.64
COG3391	381	Uncharacterized conserved protein [Function unknow	98.61
KOG0882|consensus	558		98.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.56
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.54
COG3391	381	Uncharacterized conserved protein [Function unknow	98.53
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.51
KOG3617|consensus	1416		98.51
KOG1008|consensus	783		98.46
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.44
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.41
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.38
KOG2114|consensus	933		98.37
PRK13616	591	lipoprotein LpqB; Provisional	98.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.32
KOG1008|consensus	783		98.29
KOG4640|consensus	665		98.28
KOG3621|consensus	726		98.28
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.27
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.26
KOG1645|consensus	463		98.26
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.21
KOG4640|consensus	665		98.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.2
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.18
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.13
PRK13616	591	lipoprotein LpqB; Provisional	98.12
KOG3621|consensus	726		98.12
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.08
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.03
KOG4499|consensus	310		98.01
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.95
KOG4649|consensus	354		97.94
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.93
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.93
KOG1832|consensus	1516		97.92
KOG2280|consensus	829		97.91
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.89
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.87
KOG4649|consensus	354		97.81
KOG2395|consensus	644		97.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.64
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.64
PHA02713	557	hypothetical protein; Provisional	97.63
PHA02713	557	hypothetical protein; Provisional	97.63
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.57
KOG2395|consensus	644		97.52
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.47
KOG4441|consensus	571		97.46
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.45
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.44
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.38
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.38
PHA03098	534	kelch-like protein; Provisional	97.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.35
KOG2079|consensus	1206		97.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.34
KOG4441|consensus	571		97.29
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.2
KOG2444|consensus	238		97.19
KOG2079|consensus	1206		97.14
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.12
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.08
PHA02790	480	Kelch-like protein; Provisional	97.06
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.03
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.02
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.98
KOG4499|consensus	310		96.87
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.86
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.84
PRK13684	334	Ycf48-like protein; Provisional	96.74
COG5167	776	VID27 Protein involved in vacuole import and degra	96.72
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.7
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.61
KOG3630|consensus	1405		96.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.58
KOG1916|consensus	1283		96.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.52
PRK13684	334	Ycf48-like protein; Provisional	96.51
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.4
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.36
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.34
PRK10115	686	protease 2; Provisional	96.32
KOG2444|consensus	238		96.25
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.2
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.15
KOG3630|consensus	1405		96.15
KOG2247|consensus	615		96.15
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.01
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.98
PHA03098	534	kelch-like protein; Provisional	95.87
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.8
KOG2280|consensus	829		95.77
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.77
PRK10115	686	protease 2; Provisional	95.72
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.62
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.3
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.28
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	95.27
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.23
PHA02790	480	Kelch-like protein; Provisional	95.14
COG5167	776	VID27 Protein involved in vacuole import and degra	95.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.09
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.06
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.94
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	94.76
KOG2377|consensus	657		94.76
KOG2247|consensus	615		94.74
COG4590	733	ABC-type uncharacterized transport system, permeas	94.69
KOG2377|consensus	657		94.6
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.58
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.46
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.29
KOG4460|consensus	741		94.27
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	94.23
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	94.23
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.13
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.02
PLN02153	341	epithiospecifier protein	93.86
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.85
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.79
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.74
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.67
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.66
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.43
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	93.43
KOG1897|consensus	1096		93.3
KOG1983|consensus	993		93.3
KOG1897|consensus	1096		93.29
KOG4460|consensus	741		93.25
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.23
PLN02193	470	nitrile-specifier protein	93.22
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.13
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	93.03
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.85
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.84
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.84
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.76
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.64
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.62
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.62
KOG3616|consensus	1636		92.25
COG5276	370	Uncharacterized conserved protein [Function unknow	92.05
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.04
KOG1916|consensus	1283		90.98
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.75
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.74
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.52
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.38
PLN02193	470	nitrile-specifier protein	90.18
KOG1900|consensus	1311		90.16
COG4590	733	ABC-type uncharacterized transport system, permeas	89.72
PLN02153	341	epithiospecifier protein	89.71
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.55
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.23
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.13
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.91
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.87
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.61
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	88.5
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.44

>KOG0271|consensus

Probab=100.00  E-value=1.7e-46  Score=298.78  Aligned_cols=256  Identities=19%  Similarity=0.325  Sum_probs=223.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEE-E
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIEL-H   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~-~   85 (315)
                      .++|.|++|+|+|..|++|+.|.++++||+.+..+..+.. |..-|.|++|+|||+.||+|+ ||.|.+||.. ++++ .
T Consensus       115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~  194 (480)
T KOG0271|consen  115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR  194 (480)
T ss_pred             CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc
Confidence            7889999999999999999999999999999999988887 999999999999999999998 8999999984 3332 2


Q ss_pred             Ee-ecCCceEEEEEcCC-----CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          86 CL-KVLNKVTRMEFLPY-----HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        86 ~~-~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      .+ .|...|++++|.|-     ..+||+++.||.++|||+..++++..+.+|..+|+|+.|--+| +|++|+.|++|++|
T Consensus       195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw  273 (480)
T KOG0271|consen  195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVW  273 (480)
T ss_pred             cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEE
Confidence            33 46689999999873     5689999999999999999999999999999999999996444 77788888888888


Q ss_pred             cCCCCc--------------------------------------------------------------------------
Q psy9936         160 SPTVQK--------------------------------------------------------------------------  165 (315)
Q Consensus       160 d~~~~~--------------------------------------------------------------------------  165 (315)
                      +...|.                                                                          
T Consensus       274 ~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p  353 (480)
T KOG0271|consen  274 RALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP  353 (480)
T ss_pred             EccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc
Confidence            754432                                                                          


Q ss_pred             -----ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEEc--CCE
Q psy9936         166 -----PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATSR--GNI  237 (315)
Q Consensus       166 -----~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~--~~~  237 (315)
                           ++..+.+|..-|+.+.||||++|+|+++.|.+|++||.+++ +.+..+++|- +|+.++|+.|.++++++  |.+
T Consensus       354 ~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT  432 (480)
T KOG0271|consen  354 FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDST  432 (480)
T ss_pred             cccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCce
Confidence                 23445577888999999999999999999999999999999 9999999886 69999999999876664  899


Q ss_pred             EEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         238 VEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       238 i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      +++|++                +++.|+|||..+++|+.++..+.+
T Consensus       433 LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  433 LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            999987                789999999999999999877655

>KOG0272|consensus

Probab=100.00  E-value=5.4e-47  Score=304.90  Aligned_cols=258  Identities=19%  Similarity=0.243  Sum_probs=235.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeec--CcEEEEEe-CCeEEEEeCCC-CEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHL--ETMFAVAQ-KDWVYIYDNQG-IEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~-~~~i~i~~~~~-~~~   84 (315)
                      ..+|..+.||+|++.|+||+.+|.++||+..+...+.++. |.+.+.++.|+|.  +..+|+++ ||++++|+.++ ..+
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l  254 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL  254 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence            7889999999999999999999999999999999888888 9999999999996  55677765 99999999976 444


Q ss_pred             EEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          85 HCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        85 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      ..+ .|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|+|||.++++|+.|..-+|||+++
T Consensus       255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt  334 (459)
T KOG0272|consen  255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT  334 (459)
T ss_pred             hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence            444 4558999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccC-CeE--EEEcCCEEE
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQR-GLL--ATSRGNIVE  239 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~-g~~--~~~~~~~i~  239 (315)
                      ++++..+.+|..+|.+|+|+|+|..|||||.|++++|||++.. .++..++.|.. |+.+.|+|+ |.+  .++.|++++
T Consensus       335 gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k  413 (459)
T KOG0272|consen  335 GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK  413 (459)
T ss_pred             CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCccee
Confidence            9999999999999999999999999999999999999999998 88999999985 899999994 444  455699999


Q ss_pred             ecCC----------------CceeecccccccccCCcchhhhhhh
Q psy9936         240 FLKP----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       240 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      +|..                .+++++|++..+++++.|+.+|-+.
T Consensus       414 iWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  414 IWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9977                6889999999999999999888664

>KOG0286|consensus

Probab=100.00  E-value=2e-41  Score=261.15  Aligned_cols=261  Identities=16%  Similarity=0.226  Sum_probs=231.7

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      -.|++ .+.|+++.|++|.++|++++.||.+.|||.-+......++ ....|..++|+|.|+++|+|+ |+...||++..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            34566 7889999999999999999999999999998888777777 667899999999999999998 99999999853


Q ss_pred             C------EE-E-EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEcC
Q psy9936          82 I------EL-H-CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGHR  152 (315)
Q Consensus        82 ~------~~-~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~  152 (315)
                      .      .+ + ...|.+.+.|+.|.+|+ .|++++.|.++.+||+++++.+..|.+|.+.|.+++++| +++.+++|+-
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence            2      11 1 23467899999999855 688999999999999999999999999999999999999 9999999999


Q ss_pred             CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCe
Q psy9936         153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGL  229 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~  229 (315)
                      |+..++||+|.+.++++|.+|.+.|+++.|.|+|.-+++|+.|+++++||++.. +.+..+....   +|++++||-.|+
T Consensus       208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGR  286 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGR  286 (343)
T ss_pred             ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEccccc
Confidence            999999999999999999999999999999999999999999999999999998 7777776543   799999999996


Q ss_pred             EE-E-EcCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         230 LA-T-SRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       230 ~~-~-~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      ++ + ..|.++.+|+.                .++..+|||..+++|+=+...|.+
T Consensus       287 lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  287 LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence            44 3 34889999987                788999999999999988776654

>KOG0272|consensus

Probab=100.00  E-value=5.5e-43  Score=281.85  Aligned_cols=240  Identities=15%  Similarity=0.214  Sum_probs=219.7

Q ss_pred             cEEEeeC-CCcEEEEEEcCC--CCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEE
Q psy9936           3 KQFDLDL-QFGIYRMNYTKN--GRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIY   77 (315)
Q Consensus         3 ~~~~~~~-~~~v~~~~~s~~--~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~   77 (315)
                      .+..+.. ...|.++.|+|.  +..||+++.||++++|++++..++..+. |...|..++|+|+|++|++++ |.+-++|
T Consensus       209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW  288 (459)
T KOG0272|consen  209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW  288 (459)
T ss_pred             eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence            4556667 889999999997  5699999999999999999988888887 888999999999999999997 9999999


Q ss_pred             eCCCCE--EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936          78 DNQGIE--LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus        78 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                      |++++.  +..-.|..+|.+++|+|||.++++|+.|..-+|||+++|.++..+.+|...|.+|+|+|+|-.||||+.|++
T Consensus       289 D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  289 DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             ccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence            995432  233467799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECC-CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeE--E
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNH-TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLL--A  231 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~--~  231 (315)
                      ++|||++..+.+.++.+|.+-|+.|.|+| .|.+|+|++.|++++||...++ .+++.+.+|. .|.++.++||+.+  .
T Consensus       369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t  447 (459)
T KOG0272|consen  369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHEGKVISLDISPDSQAIAT  447 (459)
T ss_pred             EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCCccceEEEEeccCCceEEE
Confidence            99999999999999999999999999999 6889999999999999999999 9999999998 5999999999954  4


Q ss_pred             EEcCCEEEecCC
Q psy9936         232 TSRGNIVEFLKP  243 (315)
Q Consensus       232 ~~~~~~i~~~~~  243 (315)
                      ++.|.+++.|.|
T Consensus       448 ~s~DRT~KLW~~  459 (459)
T KOG0272|consen  448 SSFDRTIKLWRP  459 (459)
T ss_pred             eccCceeeeccC
Confidence            456999999975

>KOG0271|consensus

Probab=100.00  E-value=1.2e-40  Score=265.40  Aligned_cols=237  Identities=17%  Similarity=0.241  Sum_probs=202.7

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE-Eec-CCCceeEEEEee-----cCcEEEEEe-CCeE
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC-EMN-VMEEVYDIKWLH-----LETMFAVAQ-KDWV   74 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~-~~~-~~~~v~~~~~~~-----~~~~l~~~~-~~~i   74 (315)
                      +|.++. ...|.|++|+|||+.||+|+.||.|++||..+++.+. .+. |...|++++|.|     ..++||+++ ||.+
T Consensus       150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v  229 (480)
T KOG0271|consen  150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV  229 (480)
T ss_pred             ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence            566677 7899999999999999999999999999999887653 455 999999999987     357888877 9999


Q ss_pred             EEEeCCC-CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE--------------------------
Q psy9936          75 YIYDNQG-IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS--------------------------  126 (315)
Q Consensus        75 ~i~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--------------------------  126 (315)
                      +|||+.. ..+.++ .|..+|+|+.|--+| ++++|+.|++|++|+...|...+                          
T Consensus       230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~  308 (480)
T KOG0271|consen  230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD  308 (480)
T ss_pred             EEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence            9999964 444444 577999999998665 89999999999999766532221                          


Q ss_pred             -----------------------------------------------------EeccCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936         127 -----------------------------------------------------DFSAKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus       127 -----------------------------------------------------~~~~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                                                                           .+.+|..-|+.+.||||++++|+++-|
T Consensus       309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD  388 (480)
T KOG0271|consen  309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD  388 (480)
T ss_pred             cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence                                                                 223566668889999999999999999


Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEE
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLAT  232 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~  232 (315)
                      ..|++||.++|+.+.+|++|-++|..++|+.|.++|++|+.|.++++|++++. +....+++|. .|.++.|+|||..++
T Consensus       389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCCCceee
Confidence            99999999999999999999999999999999999999999999999999998 8888899887 699999999997666


Q ss_pred             Ec--CCEEEecC
Q psy9936         233 SR--GNIVEFLK  242 (315)
Q Consensus       233 ~~--~~~i~~~~  242 (315)
                      ++  |..+++|.
T Consensus       468 sggkdkv~~lw~  479 (480)
T KOG0271|consen  468 SGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceEEEeec
Confidence            54  66777775

>KOG0279|consensus

Probab=100.00  E-value=1e-38  Score=244.77  Aligned_cols=263  Identities=13%  Similarity=0.149  Sum_probs=227.4

Q ss_pred             EEEeeC-CCcEEEEEEcCCC-CEEEEEcCCCeEEEEEcc-----CceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeE
Q psy9936           4 QFDLDL-QFGIYRMNYTKNG-RHLLLGGKRGHVAAFDWV-----RKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWV   74 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i   74 (315)
                      +-.++. ++.|+.++..+.+ ..+++++.|.++.+|++.     .|.+++.+. |...|..+..++||++..+++ |+.+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            334566 8899999998874 578899999999999875     345566666 888999999999999988887 9999


Q ss_pred             EEEeCCC-CEEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC--CCCeEEEEEcCC--CCEEE
Q psy9936          75 YIYDNQG-IELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK--KGKLSVMTQNPY--NACIC  148 (315)
Q Consensus        75 ~i~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~p~--~~~l~  148 (315)
                      ++||+.+ +..+. ..|...|.+++|+||...+++|+.|.+|.+|++. +.+..++..+  .+.|+++.|+|+  ..+|+
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            9999955 44444 4677899999999999999999999999999987 4455554433  678999999998  67999


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG  228 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  228 (315)
                      +++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.+ +.++.+.....|.+++|+|+.
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEAFDIVNSLCFSPNR  245 (315)
T ss_pred             EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEeccCCCeEeeEEecCCc
Confidence            9999999999999999999999999999999999999999999999999999999999 889999888899999999999


Q ss_pred             e-EEEEcCCEEEecCC-------------------------CceeecccccccccCCcchhhhhhh
Q psy9936         229 L-LATSRGNIVEFLKP-------------------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       229 ~-~~~~~~~~i~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      . +.+..+..|++|+.                         .+++|++||..|.+|-.++.++.++
T Consensus       246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            6 44556788999977                         5789999999999999888776654

>KOG0284|consensus

Probab=100.00  E-value=5.8e-41  Score=269.13  Aligned_cols=258  Identities=17%  Similarity=0.294  Sum_probs=230.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      ..+|..+.|.|+|+.|++|+..|.+.+|+..+......+. |..+|.++.|++++.++++|. +|.|++|+..-..+..+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            6789999999999999999999999999986554443444 899999999999999999997 78999999865544443


Q ss_pred             -ecC-CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          88 -KVL-NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        88 -~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                       .|+ ..|.+++|+|+...|+++++||+|+|||....+....+.+|...|.++.|+|.-.++++|+.|..|++||.+++.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence             333 899999999999999999999999999999998888899999999999999999999999999999999999999


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC--e-EEEEcCCEEEec
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG--L-LATSRGNIVEFL  241 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g--~-~~~~~~~~i~~~  241 (315)
                      ++.++.+|...|..+.|+|++++|+++|.|..++++|+++. +.+..+++|. .++++.|+|-.  + ..++.|+.|.+|
T Consensus       256 cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence            99999999999999999999999999999999999999988 8888888887 69999999965  3 344569999988


Q ss_pred             CC-----------------CceeecccccccccCCcchhhhhhh
Q psy9936         242 KP-----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       242 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      ..                 ++++|+|-|..+++|+.++..+.+.
T Consensus       335 ~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  335 VVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             eccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            55                 8999999999999999999776653

>KOG0263|consensus

Probab=100.00  E-value=1.7e-39  Score=280.11  Aligned_cols=238  Identities=18%  Similarity=0.289  Sum_probs=212.7

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--------------------------------EEEEecCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--------------------------------LACEMNVM   51 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--------------------------------~~~~~~~~   51 (315)
                      |++.. ...++|..|++|+.+||.|-.|..|++|.+...+                                ......|.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            55555 7899999999999999999999999999887311                                11233488


Q ss_pred             CceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE-E-EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe
Q psy9936          52 EEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE-L-HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF  128 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  128 (315)
                      ++|..+.|+|+.++|++++ |+++++|.+.+.. + ..-.|..+|+.+.|+|-|.+||+++.|++.++|......+.+.+
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence            9999999999999999887 7999999996533 2 33457799999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC
Q psy9936         129 SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG  208 (315)
Q Consensus       129 ~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~  208 (315)
                      .+|-+.|.|+.|+|+.+|+++|+.|.+|++||+.+|..++.|.||.++|.+++|||+|++|++|+.||.|.+||+.++ .
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-~  610 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG-S  610 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CeeEeccCC-CceeEEEccCCeEEE--EcCCEEEecCC
Q psy9936         209 PLNTFRTRT-PINNLAFSQRGLLAT--SRGNIVEFLKP  243 (315)
Q Consensus       209 ~~~~~~~~~-~v~~~~~s~~g~~~~--~~~~~i~~~~~  243 (315)
                      ++..+..|. .|.++.||.+|.+++  ++|++|++|+.
T Consensus       611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  611 LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            999888887 489999999995444  46899999987

>KOG0279|consensus

Probab=100.00  E-value=1.5e-37  Score=238.26  Aligned_cols=235  Identities=14%  Similarity=0.244  Sum_probs=204.2

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      .+.+ .-.|..++.++||++.++++.|+.+++||+.+++..+.|. |...|.+++|++|.+.+++++ |.+|++|++-+.
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence            3445 5678999999999999999999999999999998888887 999999999999999999988 899999999877


Q ss_pred             EEEEeec---CCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEE
Q psy9936          83 ELHCLKV---LNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVT  157 (315)
Q Consensus        83 ~~~~~~~---~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  157 (315)
                      ....+..   ..-|.|+.|+|+  ..+|++++.|++|++||+++-+....+.+|.+.++.+++||||.++++|+.||.+.
T Consensus       138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~  217 (315)
T KOG0279|consen  138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM  217 (315)
T ss_pred             EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence            6665543   467999999998  67999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC---------CC-ceeEEEccC
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR---------TP-INNLAFSQR  227 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~-v~~~~~s~~  227 (315)
                      +||++.++.+..+. |...|.+++|+|+..+|+.+... .|+|||+.+. .++..+...         .+ ..+++|++|
T Consensus       218 LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~~~clslaws~d  294 (315)
T KOG0279|consen  218 LWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK-AVVEELKLDGIGPSSKAGDPICLSLAWSAD  294 (315)
T ss_pred             EEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccch-hhhhhccccccccccccCCcEEEEEEEcCC
Confidence            99999999988876 88999999999998777766544 5999999988 777666532         12 478999999


Q ss_pred             Ce-EEEE-cCCEEEecCC
Q psy9936         228 GL-LATS-RGNIVEFLKP  243 (315)
Q Consensus       228 g~-~~~~-~~~~i~~~~~  243 (315)
                      |. ++++ .|+.|+.|.+
T Consensus       295 G~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  295 GQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             CcEEEeeecCCcEEEEEe
Confidence            95 3333 5899999874

>KOG0286|consensus

Probab=100.00  E-value=5.1e-37  Score=236.89  Aligned_cols=240  Identities=14%  Similarity=0.226  Sum_probs=212.6

Q ss_pred             ccEEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc------eEEEEec-CCCceeEEEEeecCcEEEEEeCCe
Q psy9936           2 TKQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK------TLACEMN-VMEEVYDIKWLHLETMFAVAQKDW   73 (315)
Q Consensus         2 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~   73 (315)
                      +|...+.+ ...|..++|+|.|+++|+|+-|....||++.+.      +..+.+. |.+-+.++.|.+|+.+|..++|.+
T Consensus        88 nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~T  167 (343)
T KOG0286|consen   88 NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMT  167 (343)
T ss_pred             cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCce
Confidence            45666777 788999999999999999999999999999855      2334455 888999999999999888888999


Q ss_pred             EEEEeCC-CCEEEEe-ecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q psy9936          74 VYIYDNQ-GIELHCL-KVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        74 i~i~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  150 (315)
                      .-+||++ ++.+..+ .|.+.|.+++++| +++.+++|+-|+..++||++.+..+++|.+|.+.|++++|.|+|.-|++|
T Consensus       168 CalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  168 CALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             EEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeec
Confidence            9999995 4555555 4668999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEcCCCCcceeEeec--ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccC
Q psy9936         151 HRNGTVTMWSPTVQKPLASLLC--HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQR  227 (315)
Q Consensus       151 ~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~  227 (315)
                      ++|++.++||+|..+.+..+..  -..+|++++||..|++|+.|..|.++.+||.-.+ +.+..+.+|. .|.++..+||
T Consensus       248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  248 SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPD  326 (343)
T ss_pred             CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEeeccCCeeEEEEECCC
Confidence            9999999999999988888862  2358999999999999999999999999999988 8888888887 5999999999


Q ss_pred             CeEEEEc--CCEEEecC
Q psy9936         228 GLLATSR--GNIVEFLK  242 (315)
Q Consensus       228 g~~~~~~--~~~i~~~~  242 (315)
                      |..++++  |.++++|.
T Consensus       327 G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CcEEEecchhHheeecC
Confidence            9766654  88999984

>KOG0273|consensus

Probab=100.00  E-value=4e-37  Score=251.21  Aligned_cols=250  Identities=18%  Similarity=0.314  Sum_probs=219.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~   86 (315)
                      +..|++++|+.+|..||+|+.+|.+++|+.. |.++.++. |.++|.++.|+..|.+|++++ |+++.+||... .....
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            5679999999999999999999999999964 55556665 999999999999999999887 99999999844 44444


Q ss_pred             eecC-CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          87 LKVL-NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        87 ~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      +..+ .+...+.|-.+. -|++++.|+.|+++.+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||......
T Consensus       314 f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             eeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence            5444 444778887554 68899999999999999889999999999999999999999999999999999999999888


Q ss_pred             ceeEeecccccEEEEEECCCC---------CEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEEc-
Q psy9936         166 PLASLLCHKAGIQSVAVNHTG---------TYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATSR-  234 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~-  234 (315)
                      ....+.+|...|..+.|+|.|         ..+++++.|++|++||+..+ .++..+..|. +|++++|+|+|.+++++ 
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs  471 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGS  471 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecC
Confidence            999999999999999999975         37999999999999999999 9999996665 89999999999988876 


Q ss_pred             -CCEEEecCC---------------CceeecccccccccCCcch
Q psy9936         235 -GNIVEFLKP---------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       235 -~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~  262 (315)
                       |+.|.+|..               ..+.|+.+|.+++.+..++
T Consensus       472 ~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  472 LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence             899999977               6788998888887666554

>KOG0263|consensus

Probab=100.00  E-value=2.3e-37  Score=267.06  Aligned_cols=200  Identities=20%  Similarity=0.343  Sum_probs=187.2

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CC
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GI   82 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~   82 (315)
                      +-+ .++|+.+.|+|+.++|++++.|+++++|.+.+...+..+. |..+|.++.|+|-|-++|+++ |++.++|..+ ..
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence            444 8999999999999999999999999999999999888887 999999999999999999987 8999999984 34


Q ss_pred             EEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          83 ELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        83 ~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .++. ..|...|.|+.|+|+.+++++|+.|.+|++||..+|..++.|.+|.++|.+++|+|+|++|++|+.||.|.+||+
T Consensus       527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence            4444 457799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      .+++.+..+.+|.+.|.++.||.+|..||+|+.|++|++||+...
T Consensus       607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999999999999999999999998754

>KOG0291|consensus

Probab=100.00  E-value=8e-36  Score=256.14  Aligned_cols=263  Identities=17%  Similarity=0.341  Sum_probs=232.7

Q ss_pred             cEEEeeC-CCcEEEEEEcCCCCEEEEEcCC-CeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEe
Q psy9936           3 KQFDLDL-QFGIYRMNYTKNGRHLLLGGKR-GHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYD   78 (315)
Q Consensus         3 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~   78 (315)
                      .++.+.. +.+|..++|+..|..||.|+.. |.+-||++.+...+...+ |...+.+++++|||+++|+|+ ||.|++||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            4556667 7899999999999999998765 899999999888776666 889999999999999999987 89999999


Q ss_pred             C-CCCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEcCCC-
Q psy9936          79 N-QGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-GKLSVMTQNPYNACICLGHRNG-  154 (315)
Q Consensus        79 ~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~-  154 (315)
                      . .+.+..++. |...|+.+.|+..|+.+++++.||+|+.||+...+..+++.... -...+++..|.|.++..|+.|. 
T Consensus       379 ~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F  458 (893)
T KOG0291|consen  379 TQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF  458 (893)
T ss_pred             ccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence            8 567877775 55899999999999999999999999999999999999887543 3467889999999999888876 


Q ss_pred             eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEE
Q psy9936         155 TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LAT  232 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~  232 (315)
                      .|.+|++.+|+.+..+.||.+||.+++|+|.|..||++|.|.+|++||+-.....+.++.....+..++|+|+|.  .++
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence            799999999999999999999999999999999999999999999999977546788888888899999999993  566


Q ss_pred             EcCCEEEecCC------------------------------------CceeecccccccccCCcchhhh
Q psy9936         233 SRGNIVEFLKP------------------------------------PEINFEPRRKANKAGGSVQRAK  265 (315)
Q Consensus       233 ~~~~~i~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~  265 (315)
                      +.||.|.+|++                                    +.+.+++||..+.+|+..+.+.
T Consensus       539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iC  607 (893)
T KOG0291|consen  539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSIC  607 (893)
T ss_pred             EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEE
Confidence            78999998877                                    7899999999999998877443

>KOG0645|consensus

Probab=100.00  E-value=5.4e-35  Score=223.45  Aligned_cols=262  Identities=13%  Similarity=0.189  Sum_probs=216.7

Q ss_pred             ccEEEeeC-CCcEEEEEEcCC-CCEEEEEcCCCeEEEEEccC---ceEEEEec--CCCceeEEEEeecCcEEEEEe-CCe
Q psy9936           2 TKQFDLDL-QFGIYRMNYTKN-GRHLLLGGKRGHVAAFDWVR---KTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDW   73 (315)
Q Consensus         2 ~~~~~~~~-~~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~   73 (315)
                      .+++.+++ .+.+..++|+|- |..||+++.|+.|++|+...   -.+...+.  |...|.+++|+|.|++|++++ |.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            35566777 778999999998 88999999999999999874   33444443  788999999999999999998 999


Q ss_pred             EEEEeCCCCEEE---Ee-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC---eEEEEeccCCCCeEEEEEcCCCCE
Q psy9936          74 VYIYDNQGIELH---CL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG---KIVSDFSAKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        74 i~i~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~  146 (315)
                      +.||.-...+..   .+ .|...|.+++|+++|++||+++.|.+|.+|.+..+   .+...++.|...|..+.|+|...+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            999987544333   33 46689999999999999999999999999998744   577788999999999999999999


Q ss_pred             EEEEcCCCeEEEEcCC---CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEE
Q psy9936         147 ICLGHRNGTVTMWSPT---VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLA  223 (315)
Q Consensus       147 l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  223 (315)
                      |++++.|.+|++|+-.   ...+++++.+|.+.|.+++|+|.|..|++++.|++++||-..+.    -......+++.+.
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~  240 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP  240 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee
Confidence            9999999999999866   34678999999999999999999999999999999999986643    1111123688999


Q ss_pred             EccCCe-EEEEcCCEEEecC-----------------------CCceeeccc-ccccccCCcchhhhhhh
Q psy9936         224 FSQRGL-LATSRGNIVEFLK-----------------------PPEINFEPR-RKANKAGGSVQRAKVKK  268 (315)
Q Consensus       224 ~s~~g~-~~~~~~~~i~~~~-----------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~  268 (315)
                      |. +|. ..+++|+.|+++.                       +++++|.|. ...|++++.++.++.++
T Consensus       241 W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  241 WD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             ec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            99 775 4556788888542                       288999994 67888999888766543

>KOG0295|consensus

Probab=100.00  E-value=1.1e-36  Score=241.40  Aligned_cols=261  Identities=17%  Similarity=0.221  Sum_probs=233.8

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      .+.+ ..+|+.+-|+|+-..+++++.|++|++||..++++...++ |...+.+++|+..|+++++++ |-.+++||.+..
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence            3444 6789999999999999999999999999999999988888 888999999999999999987 556999998542


Q ss_pred             --EEE-EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          83 --ELH-CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        83 --~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                        .+. ...|...|.++.|-|.|.++++++.|.+|+.|++.++-++.++.+|...|..+..+.||.++++++.|.++++|
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence              222 24566889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCC---------------CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEE
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHT---------------GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLA  223 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~---------------g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~  223 (315)
                      -+.+.++...++.|.-+|.+++|.|.               +.++++++.|++|++||+.++ .++.++.+|. .|.+++
T Consensus       263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeE
Confidence            99999999999999999999999873               258999999999999999999 9999999987 599999


Q ss_pred             EccCCeEEEE--cCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         224 FSQRGLLATS--RGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       224 ~s~~g~~~~~--~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      |+|.|+|++|  .|+++++|+.                ++++|..+..++++|+.+...+.+
T Consensus       342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  403 (406)
T ss_pred             EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeee
Confidence            9999987665  4899999987                778888888899999988876654

>KOG0315|consensus

Probab=100.00  E-value=1.1e-35  Score=224.73  Aligned_cols=249  Identities=15%  Similarity=0.199  Sum_probs=213.2

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEeCCeEEEEeCCC---CEEEEee-cCCceEEEE
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQKDWVYIYDNQG---IELHCLK-VLNKVTRME   97 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~---~~~~~~~-~~~~v~~~~   97 (315)
                      -+|++++.|.+|++|...+|.+..+++|. ..|+.+...|+++.||+++...|++||++.   ..+..+. |...|.++.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg   90 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVG   90 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence            48899999999999999999999999965 579999999999999999999999999943   2444444 558999999


Q ss_pred             EcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee-ccccc
Q psy9936          98 FLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL-CHKAG  176 (315)
Q Consensus        98 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~  176 (315)
                      |..+|+++++|++||+++|||++.....+.++ |..+|+++..+|+...|++|..+|.|++||+....+...+. ....+
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~  169 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS  169 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence            99999999999999999999999866555554 77999999999999999999999999999999886665554 34468


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEccCCC-----CCeeEeccCCC-ceeEEEccCCeEEEE--cCCEEEecCC-----
Q psy9936         177 IQSVAVNHTGTYMATSAGDSQLRIWDVRNLE-----GPLNTFRTRTP-INNLAFSQRGLLATS--RGNIVEFLKP-----  243 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~-v~~~~~s~~g~~~~~--~~~~i~~~~~-----  243 (315)
                      |.++...|||.+|+.+...|..++|++.+..     .|+..++.|.+ +..+.+|||+.++++  .|.++++|+.     
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence            9999999999999999999999999997641     35556666764 899999999976554  5889999977     


Q ss_pred             ------------CceeecccccccccCCcchhhhhhhhhHH
Q psy9936         244 ------------PEINFEPRRKANKAGGSVQRAKVKKIVRE  272 (315)
Q Consensus       244 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (315)
                                  +..+||.|+++|++++.+...+.+.....
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence                        67889999999999999998887765443

>KOG0285|consensus

Probab=100.00  E-value=1.5e-35  Score=234.70  Aligned_cols=258  Identities=15%  Similarity=0.203  Sum_probs=229.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEE--
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELH--   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~--   85 (315)
                      .+.|.|+++.|-.+++++|+.|++|.|||+.++++..++. |.+.|..+++++-..++.++. |+.|+.||++..++.  
T Consensus       151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~  230 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH  230 (460)
T ss_pred             cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence            6889999999999999999999999999999999999988 999999999999888888776 889999999655443  


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      ...|...|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++
T Consensus       231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK  310 (460)
T ss_pred             hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence            24566999999999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCCeEEEEcC-CEEEecCC
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRGLLATSRG-NIVEFLKP  243 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~~~~~~-~~i~~~~~  243 (315)
                      ...++..|...+.+++.+|....+|+++.|. |+-|++..+ ..+..+..|.. +++++...||.+++++| |.+..|+-
T Consensus       311 t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g-~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  311 TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG-EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDW  388 (460)
T ss_pred             eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc-chhhccccccceeeeeeeccCceEEEcCCceEEEEEec
Confidence            9999999999999999999999999999884 999999998 77777877775 79999999998887775 56666643


Q ss_pred             ------------------------CceeecccccccccCCcchhhhhhhh
Q psy9936         244 ------------------------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       244 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                                              ++.+|...+..|.++..++.++..+.
T Consensus       389 ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  389 KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             CcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence                                    45667777888888888887776653

>KOG0273|consensus

Probab=100.00  E-value=7.4e-35  Score=238.01  Aligned_cols=232  Identities=19%  Similarity=0.331  Sum_probs=208.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCC-CEEEE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG-IELHC-   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~-~~~~~-   86 (315)
                      .+||.++.|+.+|.||++++.|+++.+||..++...+.+. |..+..++.|-.+..+..++.|+.|+++.+.. .++.. 
T Consensus       276 kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~  355 (524)
T KOG0273|consen  276 KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTF  355 (524)
T ss_pred             CCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceee
Confidence            7899999999999999999999999999999999988888 66666889999888888888899999999843 33334 


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC---------CEEEEEcCCCeEE
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN---------ACICLGHRNGTVT  157 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~l~~~~~d~~i~  157 (315)
                      ..|+++|.++.|+|.+.+|++++.|+++++|++......+.+.+|...|..+.|+|.|         ..+++++.|++|+
T Consensus       356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~  435 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK  435 (524)
T ss_pred             ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence            4577999999999999999999999999999999888999999999999999999975         3789999999999


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe-EEEE-cC
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL-LATS-RG  235 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~-~~  235 (315)
                      +||+..+.++..|..|..+|.+++|+|+|+|+|+|+.||.|.+|+++++ +.++.+.....|..++|+.+|- +.++ .|
T Consensus       436 lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  436 LWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQGTGGIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             EEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch-heeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence            9999999999999999999999999999999999999999999999999 9999999888999999999994 3333 47


Q ss_pred             CEEEecC
Q psy9936         236 NIVEFLK  242 (315)
Q Consensus       236 ~~i~~~~  242 (315)
                      +.+.+.+
T Consensus       515 ~~vcvld  521 (524)
T KOG0273|consen  515 GSVCVLD  521 (524)
T ss_pred             CCceEEE
Confidence            7665543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.8e-34  Score=235.71  Aligned_cols=256  Identities=20%  Similarity=0.331  Sum_probs=222.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~   86 (315)
                      ..+|.+++|+|++++|++++.+|.|++|++.+++....+. |...+..+.|+|+++++++++ ++.|++|++.. .....
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~   88 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT   88 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence            7899999999999999999999999999999887666665 777888999999997777776 89999999965 34444


Q ss_pred             ee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          87 LK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        87 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      +. +...+.++.|+|++.++++++.++.+.+||+.+++....+..|...+.+++|+|++.++++++.++.|.+||+++++
T Consensus        89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  168 (289)
T cd00200          89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK  168 (289)
T ss_pred             EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence            43 44689999999998889888889999999999888888888899999999999999999988889999999999999


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEE-c-CCEEEecC
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATS-R-GNIVEFLK  242 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~-~-~~~i~~~~  242 (315)
                      .+..+..|...+.++.|+|+++.+++++.|+.|++||++.+ .++..+..+. ++.++.|+|++.++++ . ++.+++|+
T Consensus       169 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~  247 (289)
T cd00200         169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD  247 (289)
T ss_pred             cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence            89899889899999999999999999999999999999987 7777775554 7999999999854444 4 89999887


Q ss_pred             C----------------CceeecccccccccCCcchhhhh
Q psy9936         243 P----------------PEINFEPRRKANKAGGSVQRAKV  266 (315)
Q Consensus       243 ~----------------~~~~~~~~~~~~~~~~~~~~~~~  266 (315)
                      .                ..+.|+|++..+++++.++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  287 (289)
T cd00200         248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI  287 (289)
T ss_pred             cCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence            6                56889999899998888776543

>KOG0266|consensus

Probab=100.00  E-value=2.6e-34  Score=252.23  Aligned_cols=257  Identities=18%  Similarity=0.273  Sum_probs=217.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC-CC-CE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-QG-IE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-~~-~~   83 (315)
                      ...|.++.|+|+|+++++++.++.+++|+..+.+  ....+. |...|.+++|+|+++++++++ |++|++||+ .. ..
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~  238 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN  238 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence            5789999999999999999999999999997777  555554 888999999999999999887 889999999 43 45


Q ss_pred             EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          84 LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        84 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      +..+ .|...|++++|+|+++++++|+.|++|++||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.
T Consensus       239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence            5555 577999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCc--ceeEeeccccc--EEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC----ceeEEEccCCe--EEE
Q psy9936         163 VQK--PLASLLCHKAG--IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP----INNLAFSQRGL--LAT  232 (315)
Q Consensus       163 ~~~--~~~~~~~~~~~--i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~g~--~~~  232 (315)
                      ++.  ++..+.++...  ++++.|+|++.++++++.|+.+++||+..+ .....+..|..    +.+...++.|.  +..
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg  397 (456)
T KOG0266|consen  319 TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSG  397 (456)
T ss_pred             CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEecccccCCCCeEEEE
Confidence            998  56777766655  999999999999999999999999999988 88888877652    33445566674  444


Q ss_pred             EcCCEEEecCC-----------------CceeecccccccccCC--cchhhhhh
Q psy9936         233 SRGNIVEFLKP-----------------PEINFEPRRKANKAGG--SVQRAKVK  267 (315)
Q Consensus       233 ~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~  267 (315)
                      +.|+.|..|++                 ..+.++|...++++++  .++.++.+
T Consensus       398 ~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  398 SEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW  451 (456)
T ss_pred             eCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence            56999999987                 3455667777777766  34444443

>KOG0265|consensus

Probab=100.00  E-value=2e-34  Score=223.33  Aligned_cols=258  Identities=17%  Similarity=0.251  Sum_probs=214.6

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc-CceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-C
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV-RKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-G   81 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~   81 (315)
                      +.. ++.|+.+.|+|+|.+||+|+.|..|.+|+.. ..+-...+. |.+.|..+.|.+|+..+++++ |.+++.||.+ +
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            444 7899999999999999999999999999954 333344454 999999999999998877765 8999999995 5


Q ss_pred             CEEEEee-cCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          82 IELHCLK-VLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        82 ~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      +.+...+ |..-|+++.-+.-| .++.+++.|+++++||+++...++++. ....++++.|...+..+.+|+-|+.|++|
T Consensus       123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvW  201 (338)
T KOG0265|consen  123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVW  201 (338)
T ss_pred             eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeee
Confidence            5555444 44667777633334 467788999999999999888888775 34579999999999999999999999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC---CCCeeEeccCC-----CceeEEEccCCeE-
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL---EGPLNTFRTRT-----PINNLAFSQRGLL-  230 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~-----~v~~~~~s~~g~~-  230 (315)
                      |++.+..+..+.+|..+|+.+..+|+|.++.+-+.|.++++||++..   ..++..+.++.     ....++|+|++.. 
T Consensus       202 d~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i  281 (338)
T KOG0265|consen  202 DLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI  281 (338)
T ss_pred             ccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcc
Confidence            99999999999999999999999999999999999999999999854   24566776654     3578899999853 


Q ss_pred             -EEEcCCEEEecCC----------------CceeecccccccccCCcchhhh
Q psy9936         231 -ATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAK  265 (315)
Q Consensus       231 -~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  265 (315)
                       +.+.|..+.+|+.                ..++|+|....+.+++.++++-
T Consensus       282 ~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~  333 (338)
T KOG0265|consen  282 TAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIY  333 (338)
T ss_pred             ccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeE
Confidence             4456888998877                6789999999999999998754

>KOG0284|consensus

Probab=100.00  E-value=1.2e-35  Score=238.62  Aligned_cols=233  Identities=17%  Similarity=0.248  Sum_probs=201.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEE-eCCeEEEEeC-CCCE-EE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVA-QKDWVYIYDN-QGIE-LH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~-~~~~-~~   85 (315)
                      +.+|.++.|+++|.++++|+.+|.|++|+..-........ |.+.|.+++|+|+...++++ .||+|+|||. ...+ ..
T Consensus       138 Ds~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v  217 (464)
T KOG0284|consen  138 DSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV  217 (464)
T ss_pred             cccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe
Confidence            7899999999999999999999999999976555444344 45899999999966555555 5899999997 3333 33


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      .-.|.-.|.+++|+|...++++++.|..|++||.+++.++.++.+|...|..+.|+|++++|++++.|..++++|+++.+
T Consensus       218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk  297 (464)
T KOG0284|consen  218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK  297 (464)
T ss_pred             eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH
Confidence            34566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEecc-CC-CceeEEEccCCeEEEEc--CCEEEe
Q psy9936         166 PLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRT-RT-PINNLAFSQRGLLATSR--GNIVEF  240 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~-~v~~~~~s~~g~~~~~~--~~~i~~  240 (315)
                      .+..+++|...++++.|+|- ..+|.+|+.||.|..|.+... +++..+.. |. .|++++|+|=|.+++++  |.+++.
T Consensus       298 El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  298 ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-ccccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence            99999999999999999997 458889999999999999865 67776653 43 69999999999777665  778998


Q ss_pred             cCC
Q psy9936         241 LKP  243 (315)
Q Consensus       241 ~~~  243 (315)
                      |.-
T Consensus       377 w~r  379 (464)
T KOG0284|consen  377 WTR  379 (464)
T ss_pred             ecc
Confidence            864

>KOG0315|consensus

Probab=100.00  E-value=1.3e-33  Score=213.62  Aligned_cols=218  Identities=17%  Similarity=0.213  Sum_probs=187.9

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEE-eCCeEEEEeCCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQGI   82 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~~   82 (315)
                      ..+++ ...|+++.|..+|+.+++|+.||+++|||+....+.+.+.+..+|+++..+|+..-|+++ .+|.|++||+...
T Consensus        77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            44556 578999999999999999999999999999998888889999999999999976555555 5899999999543


Q ss_pred             -EEEEe-e-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC------eEEEEeccCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          83 -ELHCL-K-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG------KIVSDFSAKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        83 -~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                       ....+ + ...+|.++...|+|.+++.+...|++++|++-+.      .++..++.|.+.+..+.+|||+++|++++.|
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence             32222 2 2378999999999999999999999999998754      4667788999999999999999999999999


Q ss_pred             CeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEE
Q psy9936         154 GTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLA  223 (315)
Q Consensus       154 ~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~  223 (315)
                      .+++||++++. +....+.+|..+++..+||.||.||+||+.|+.+++|++..+ +.+..+.+|. +..+++
T Consensus       237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~gh~K~~vc~~  307 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQGHHKAAVCVA  307 (311)
T ss_pred             ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecCCcccccEEEE
Confidence            99999999987 556677899999999999999999999999999999999999 8888887765 444444

>KOG0291|consensus

Probab=100.00  E-value=2.4e-33  Score=241.03  Aligned_cols=257  Identities=17%  Similarity=0.263  Sum_probs=229.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeC--CeEEEEeCCCC--EE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQK--DWVYIYDNQGI--EL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--~~i~i~~~~~~--~~   84 (315)
                      ...|++.+|++....||+|-..|...+|.+....++..+. ...+|..++|+..|.+||.++.  |.+-+|+....  .+
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl  344 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL  344 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence            4789999999999999999999999999999999999988 4578999999999999999985  59999987543  44


Q ss_pred             EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936          85 HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        85 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      ....|...+.+++++|||.++|+|+.||.|++||..+|-+..+|..|.+.|+.+.|+..|+.+++.+-||+|+.||+...
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            55667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEeecc-cccEEEEEECCCCCEEEEeeCCC-cEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEE--EcCCEEE
Q psy9936         165 KPLASLLCH-KAGIQSVAVNHTGTYMATSAGDS-QLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLAT--SRGNIVE  239 (315)
Q Consensus       165 ~~~~~~~~~-~~~i~~~~~sp~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~--~~~~~i~  239 (315)
                      +..+++... +....|++..|.|..++.|+.|. .|.+|+++++ +.+..+.+|. ||.+++|+|+|..++  +.|.+|+
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR  503 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR  503 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence            888888743 24567899999999999999887 5999999999 9999999987 799999999996544  4699999


Q ss_pred             ecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         240 FLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       240 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      +|+.                ..++|+|+|+.++.+..++.+...
T Consensus       504 iW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~  547 (893)
T KOG0291|consen  504 IWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFF  547 (893)
T ss_pred             EEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEE
Confidence            9987                788999999999998887654443

>KOG0319|consensus

Probab=100.00  E-value=4.6e-34  Score=244.79  Aligned_cols=281  Identities=17%  Similarity=0.216  Sum_probs=238.4

Q ss_pred             CCcEEEEEE-cCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEE--
Q psy9936          10 QFGIYRMNY-TKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELH--   85 (315)
Q Consensus        10 ~~~v~~~~~-s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~--   85 (315)
                      ++.|..|+| .|+.++||++++.+.+++|++.+..+.....|.+.|.++....+|-+|++++ |.++++|.++...-.  
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~  402 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL  402 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh
Confidence            788888887 5677899999999999999988887775555999999999666788888887 899999988332211  


Q ss_pred             ----EeecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCe-----EEE----EeccCCCCeEEEEEcCCCCEEEEEc
Q psy9936          86 ----CLKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGK-----IVS----DFSAKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        86 ----~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~-----~~~----~~~~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                          ...|...|.+++++..+ .+|++++.|.++++|++...+     .+.    +...|...|++++.+|+.++++||+
T Consensus       403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S  482 (775)
T KOG0319|consen  403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS  482 (775)
T ss_pred             hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence                13466889999997764 689999999999999997521     111    2346999999999999999999999


Q ss_pred             CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-
Q psy9936         152 RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-  229 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-  229 (315)
                      .|.+.+||++.....+..+.+|...|+++.|+|..+.+||+|.|++|+||.+.+. .+++++.+|. .|..+.|-.+|. 
T Consensus       483 qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~q  561 (775)
T KOG0319|consen  483 QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQ  561 (775)
T ss_pred             cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcE
Confidence            9999999999999999999999999999999999999999999999999999999 9999999987 699999999883 


Q ss_pred             -EEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhhHHHhhhhHHHHHHHhchhhhh
Q psy9936         230 -LATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKALGVKEIV  291 (315)
Q Consensus       230 -~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (315)
                       +.++.||-+++|+.                +.++-+|...++++|+.++++..++...++++.+..++++++.+++++
T Consensus       562 liS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~Qe  640 (775)
T KOG0319|consen  562 LISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQE  640 (775)
T ss_pred             EEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHH
Confidence             44556999999988                778888999999999999999999999888877777666666555443

>KOG0643|consensus

Probab=100.00  E-value=8.5e-33  Score=211.13  Aligned_cols=260  Identities=18%  Similarity=0.256  Sum_probs=226.6

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC-CC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-QG   81 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-~~   81 (315)
                      -+.+ +.+++-+.|+.+|.+|.+++.|.+..||-..+|+.+-++. |.+.|+++....+.+.+++++ |.++++||+ .|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            3445 7899999999999999999999999999988999999988 999999999999988888886 899999999 67


Q ss_pred             CEEEEeecCCceEEEEEcCCCceEEEEcC-----CCeEEEEEcc-------CCeEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          82 IELHCLKVLNKVTRMEFLPYHFLLATASE-----EGYLSWLDTS-------IGKIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~-------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      +.+..++...+|..+.|+++|++++....     .+.|.++|++       ..++...+..+.+.++.+-|.|-+++|++
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            88888899999999999999998877654     4679999998       34567778888899999999999999999


Q ss_pred             EcCCCeEEEEcCCCCc-ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC
Q psy9936         150 GHRNGTVTMWSPTVQK-PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG  228 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  228 (315)
                      |..||.|..||+++++ .+.....|...|+.+.++||..+++|++.|.+.++||+.+. ++++++....||++.+++|..
T Consensus       165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aaisP~~  243 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAAISPLL  243 (327)
T ss_pred             ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeecccccceeccccc
Confidence            9999999999999984 45555679999999999999999999999999999999999 999999999999999999976


Q ss_pred             e-EEEEcCCEEE------------------------------ecCC-CceeecccccccccCCcchhhhh
Q psy9936         229 L-LATSRGNIVE------------------------------FLKP-PEINFEPRRKANKAGGSVQRAKV  266 (315)
Q Consensus       229 ~-~~~~~~~~i~------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~  266 (315)
                      - ++.+++..-+                              ++.| ++++|+|+|+..++|+.++-++.
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~  313 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL  313 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence            3 3333333222                              4445 89999999999999999986654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-32  Score=257.00  Aligned_cols=257  Identities=16%  Similarity=0.261  Sum_probs=210.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc----e----EEEEecCCCceeEEEEeec-CcEEEEEe-CCeEEEEeC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK----T----LACEMNVMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~----~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~   79 (315)
                      .+.|.+++|+|+|++||+|+.|+.|+||+....    .    ....+.+...+.+++|+|. +.+|++++ |+.|++||+
T Consensus       483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~  562 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV  562 (793)
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence            667999999999999999999999999997532    1    2233445567899999884 67777776 999999999


Q ss_pred             CC-CEEEEe-ecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEc-CCCCEEEEEcCCCe
Q psy9936          80 QG-IELHCL-KVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQN-PYNACICLGHRNGT  155 (315)
Q Consensus        80 ~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~d~~  155 (315)
                      .+ ..+..+ .|...|++++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..+.++.|+ ++|.+|++|+.|+.
T Consensus       563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~  641 (793)
T PLN00181        563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHK  641 (793)
T ss_pred             CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCe
Confidence            64 444444 4668899999997 6889999999999999999999888888754 578999995 57899999999999


Q ss_pred             EEEEcCCCCc-ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC-----CCCeeEeccCC-CceeEEEccCC
Q psy9936         156 VTMWSPTVQK-PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL-----EGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       156 i~i~d~~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                      |++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|++|++||++..     ..++..+..|. .+..++|+|++
T Consensus       642 I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~  720 (793)
T PLN00181        642 VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD  720 (793)
T ss_pred             EEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC
Confidence            9999998765 567788999999999997 6789999999999999999742     15677777776 47899999998


Q ss_pred             eEEEE--cCCEEEecCC-----------------------------CceeecccccccccCCcchhhhhhh
Q psy9936         229 LLATS--RGNIVEFLKP-----------------------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       229 ~~~~~--~~~~i~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      .++++  .|+.+.+|+.                             .+++|+|++..+++++.++.++...
T Consensus       721 ~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        721 GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            65443  4899998873                             4567899999999999888776543

>KOG0268|consensus

Probab=100.00  E-value=2.3e-34  Score=228.22  Aligned_cols=262  Identities=17%  Similarity=0.217  Sum_probs=229.0

Q ss_pred             eeC-CCcEEEEEEcCCC-CEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCE
Q psy9936           7 LDL-QFGIYRMNYTKNG-RHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIE   83 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~   83 (315)
                      |.+ .++|.|++=+|.. ..+++|+.||.|+|||+.+..+...+. |.+.|..+++.. +.++.+|+|.+|+.|.+++..
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p  140 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPP  140 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCc
Confidence            444 7899999999977 789999999999999999999999988 888999999987 788888899999999999887


Q ss_pred             EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCC
Q psy9936          84 LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVTMWSPT  162 (315)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~  162 (315)
                      ++.+.....+..+.-+..+..+++++.+  |.|||.....++..+.-....+.++.|+|-.. +|++|+.|+.|.+||++
T Consensus       141 ~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R  218 (433)
T KOG0268|consen  141 LHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR  218 (433)
T ss_pred             ceeeeccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence            7777777778888877778889998864  99999988889999988888899999999665 78888899999999999


Q ss_pred             CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EEEEcCCEEE
Q psy9936         163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LATSRGNIVE  239 (315)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~~~i~  239 (315)
                      ++.+++.+. ....-+.|+|+|.+--+++|+.|..++.||++....++.....|. .|.++.|||.|.  +.+|.|.+|+
T Consensus       219 ~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR  297 (433)
T KOG0268|consen  219 QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR  297 (433)
T ss_pred             cCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence            999998776 455668899999888899999999999999999878898888887 699999999994  5666799999


Q ss_pred             ecCC-----------------CceeecccccccccCCcchhhhhhhhhHH
Q psy9936         240 FLKP-----------------PEINFEPRRKANKAGGSVQRAKVKKIVRE  272 (315)
Q Consensus       240 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (315)
                      ++..                 .++.||.|.+++.+|+.+..++.|+.-..
T Consensus       298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            8876                 79999999999999999997777655443

>KOG0282|consensus

Probab=100.00  E-value=4.1e-34  Score=234.41  Aligned_cols=238  Identities=15%  Similarity=0.271  Sum_probs=204.6

Q ss_pred             EEEeeC-CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccC-ceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEe
Q psy9936           4 QFDLDL-QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVR-KTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYD   78 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~   78 (315)
                      ++.+.+ ..+|.++.|.| .+.+|++++.|+.|+||++-. +++++++. |..+|.+++|+++|..+.+++ |+.|++||
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            455666 88999999999 888999999999999999876 78888887 899999999999987776665 99999999


Q ss_pred             CC-CCEEEEeecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          79 NQ-GIELHCLKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        79 ~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      .+ |.....+.....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-|+|+.+++.++|+++
T Consensus       287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~  366 (503)
T KOG0282|consen  287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV  366 (503)
T ss_pred             cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence            95 5666667777889999999998 899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCcce----------------------------------------------eEeeccc--ccEEEEEECCCCCE
Q psy9936         157 TMWSPTVQKPL----------------------------------------------ASLLCHK--AGIQSVAVNHTGTY  188 (315)
Q Consensus       157 ~i~d~~~~~~~----------------------------------------------~~~~~~~--~~i~~~~~sp~g~~  188 (315)
                      +||+.+.+-++                                              ..+.+|.  +--..+.|||||.+
T Consensus       367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~  446 (503)
T KOG0282|consen  367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT  446 (503)
T ss_pred             EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe
Confidence            99997654221                                              1122333  33467899999999


Q ss_pred             EEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC--e-EEEEcCCEEEecC
Q psy9936         189 MATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG--L-LATSRGNIVEFLK  242 (315)
Q Consensus       189 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g--~-~~~~~~~~i~~~~  242 (315)
                      |++|+.||.+.+||.++. +.+..++.|. ++..+.|+|..  . ..++.+|.|++|+
T Consensus       447 l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  447 LCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999998 9999999985 78999999976  3 3444599999985

>KOG0296|consensus

Probab=100.00  E-value=2.2e-32  Score=217.05  Aligned_cols=259  Identities=15%  Similarity=0.198  Sum_probs=219.1

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      .+.. ..+|++++.+|+.+++++|+.|..-.+|++.++.....+. |.+.|.++.|+.+|.+||+|. +|.|+||....+
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            3444 7899999999999999999999999999999999887777 999999999999999999997 999999999544


Q ss_pred             -EEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          83 -ELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        83 -~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                       ....+. .-..+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++||
T Consensus       139 ~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  139 GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence             333343 446778899999999999999999999999998888889999999999999999999999999999999999


Q ss_pred             CCCCcceeEeec------c---------------------------------------------cccEEEEEECC---CC
Q psy9936         161 PTVQKPLASLLC------H---------------------------------------------KAGIQSVAVNH---TG  186 (315)
Q Consensus       161 ~~~~~~~~~~~~------~---------------------------------------------~~~i~~~~~sp---~g  186 (315)
                      +.+++++..+..      +                                             ...+.++.+.|   .=
T Consensus       219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l  298 (399)
T KOG0296|consen  219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL  298 (399)
T ss_pred             cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence            999987666541      0                                             01112222222   33


Q ss_pred             CEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC-eEEEEcCCEEEecCC----------------Cceeec
Q psy9936         187 TYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG-LLATSRGNIVEFLKP----------------PEINFE  249 (315)
Q Consensus       187 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~~~~~~~~i~~~~~----------------~~~~~~  249 (315)
                      .+.|+|+.||+|.|||+... .+...+....+|..+.|-++. ++.++.+|.|+.|+.                ..++++
T Consensus       299 pL~A~G~vdG~i~iyD~a~~-~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls  377 (399)
T KOG0296|consen  299 PLAACGSVDGTIAIYDLAAS-TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS  377 (399)
T ss_pred             chhhcccccceEEEEecccc-hhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence            46889999999999999997 788888888899999999955 577778999999988                678889


Q ss_pred             ccccccccCCcchhhh
Q psy9936         250 PRRKANKAGGSVQRAK  265 (315)
Q Consensus       250 ~~~~~~~~~~~~~~~~  265 (315)
                      |+.+++++++.++..+
T Consensus       378 ~~~~~vvT~s~D~~a~  393 (399)
T KOG0296|consen  378 PQKRLVVTVSDDNTAL  393 (399)
T ss_pred             CCCcEEEEecCCCeEE
Confidence            9999999999987654

>KOG0318|consensus

Probab=100.00  E-value=8.5e-32  Score=222.98  Aligned_cols=254  Identities=16%  Similarity=0.245  Sum_probs=205.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec----CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN----VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~   83 (315)
                      ..-|.|+.|+|||.++|+.+.||.|.+||-.+++.+..+.    |.+.|++++|+||+..+++++ |.+++|||+.. ..
T Consensus       190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             ccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence            5668999999999999999999999999999999988886    888999999999998887765 89999999954 44


Q ss_pred             EEEeecC----CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          84 LHCLKVL----NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        84 ~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      +..+...    ..-..+-|.  ...|++.+.+|.|.+++...+.+...+.+|...|++++.+|++.+|++|+.||.|.-|
T Consensus       270 v~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  270 VSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             EEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence            4444433    233344565  4578999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcc-------------------------------------------------------------------------
Q psy9936         160 SPTVQKP-------------------------------------------------------------------------  166 (315)
Q Consensus       160 d~~~~~~-------------------------------------------------------------------------  166 (315)
                      |..++..                                                                         
T Consensus       348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            9765421                                                                         


Q ss_pred             eeEeecc--------cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCe---eEeccCCCceeEEEccCCeEEEEcC
Q psy9936         167 LASLLCH--------KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL---NTFRTRTPINNLAFSQRGLLATSRG  235 (315)
Q Consensus       167 ~~~~~~~--------~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~~~~~~  235 (315)
                      +..++.+        .-...+++++|++..+|.|+.|+.++||.+... ...   .......+++.+++|||+.+++++|
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~-~l~ee~~~~~h~a~iT~vaySpd~~yla~~D  506 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD-ELKEEAKLLEHRAAITDVAYSPDGAYLAAGD  506 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC-cccceeeeecccCCceEEEECCCCcEEEEec
Confidence            0000000        113468899999999999999999999999876 332   2233445799999999998888875


Q ss_pred             --CEEEecCC-----------------CceeecccccccccCCcchhhhh
Q psy9936         236 --NIVEFLKP-----------------PEINFEPRRKANKAGGSVQRAKV  266 (315)
Q Consensus       236 --~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~  266 (315)
                        +.+..|+.                 .+++|+|+++++|+|+.|..+-.
T Consensus       507 a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii  556 (603)
T KOG0318|consen  507 ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII  556 (603)
T ss_pred             cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence              55666655                 78999999999999999885433

>KOG0295|consensus

Probab=100.00  E-value=5.3e-33  Score=220.51  Aligned_cols=232  Identities=15%  Similarity=0.261  Sum_probs=205.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc-eEEEE-ecCCCceeEEEEeecCcEEEEEe-CCeEEEEeC-CCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK-TLACE-MNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-QGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-~~~~~~   85 (315)
                      .+++..++|+..|++||+++.|=.+.+||.++. +++.. ..|...|.++.|.|.|.++++++ |.+|+.|++ ++..+.
T Consensus       150 t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~  229 (406)
T KOG0295|consen  150 TDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK  229 (406)
T ss_pred             ccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE
Confidence            567999999999999999999988999998763 33333 34888999999999999998887 899999999 566666


Q ss_pred             Eee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCC---------------CCEEEE
Q psy9936          86 CLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPY---------------NACICL  149 (315)
Q Consensus        86 ~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~---------------~~~l~~  149 (315)
                      .+. |..-|..++.+.||.++++++.|.++++|-+.++++...++.|..+|.+++|.|.               ++++++
T Consensus       230 t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s  309 (406)
T KOG0295|consen  230 TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS  309 (406)
T ss_pred             eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence            654 5578999999999999999999999999999999888899999999999999663               258999


Q ss_pred             EcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCC
Q psy9936         150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRG  228 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g  228 (315)
                      ++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++..|+++++||+++. +++..+..|.. ++++.|..+.
T Consensus       310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt~lDfh~~~  388 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVTSLDFHKTA  388 (406)
T ss_pred             ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeEEEecCCCC
Confidence            999999999999999999999999999999999999999999999999999999999 99999998875 8999999988


Q ss_pred             eEEEEc--CCEEEecC
Q psy9936         229 LLATSR--GNIVEFLK  242 (315)
Q Consensus       229 ~~~~~~--~~~i~~~~  242 (315)
                      .+++++  |.+++.|.
T Consensus       389 p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  389 PYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceEEeccccceeeeee
Confidence            766654  77887774

>KOG0266|consensus

Probab=100.00  E-value=4.6e-32  Score=238.08  Aligned_cols=233  Identities=17%  Similarity=0.249  Sum_probs=204.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEc-cCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDW-VRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~   85 (315)
                      ...|.+++|+|+++++++++.|++|+|||+ ..+..+.++. |...|++++|+|+++++++++ |++|++||+.+ ....
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~  282 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR  282 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence            788999999999999999999999999999 5667888886 999999999999998888887 89999999965 5555


Q ss_pred             Eee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe--EEEEeccCCCC--eEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          86 CLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK--IVSDFSAKKGK--LSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        86 ~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      .+. |...|.+++|++++++|++++.|+.|++||+.++.  +...+..+...  ++.+.|+|++.++++++.|+.+++||
T Consensus       283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~  362 (456)
T KOG0266|consen  283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD  362 (456)
T ss_pred             eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence            554 55899999999999999999999999999999998  55677666555  99999999999999999999999999


Q ss_pred             CCCCcceeEeeccccc---EEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-C-CceeEEEccCCeEEEEc-
Q psy9936         161 PTVQKPLASLLCHKAG---IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-T-PINNLAFSQRGLLATSR-  234 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~---i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~-~v~~~~~s~~g~~~~~~-  234 (315)
                      ++.+..+..+.+|...   +.+...++.+.++++|+.|+.|++||+.++ ..+..+..| . .+..+.|+|...++++. 
T Consensus       363 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  363 LRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             ccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCceeccccCCCcCeeeecC
Confidence            9999999999988874   445556788999999999999999999998 888888888 3 68999999998655543 


Q ss_pred             ---CCEEEecCC
Q psy9936         235 ---GNIVEFLKP  243 (315)
Q Consensus       235 ---~~~i~~~~~  243 (315)
                         |+.+++|..
T Consensus       442 ~~~d~~~~~w~~  453 (456)
T KOG0266|consen  442 FEGDGLIRLWKY  453 (456)
T ss_pred             cCCCceEEEecC
Confidence               688999874

>KOG0318|consensus

Probab=100.00  E-value=1.4e-31  Score=221.61  Aligned_cols=262  Identities=16%  Similarity=0.267  Sum_probs=224.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE--EEEec-CCCceeEEEEeecCcEEEEEeC-----CeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL--ACEMN-VMEEVYDIKWLHLETMFAVAQK-----DWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~-----~~i~i~~~~~   81 (315)
                      ...++-..|||.|-|+|+|...|.|+|||......  ..+++ ..++|.+++|+++++.|++.++     |.+.+||.-+
T Consensus        59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~  138 (603)
T KOG0318|consen   59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN  138 (603)
T ss_pred             cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence            45677888999999999999999999999765332  33444 6689999999999988877664     4688898754


Q ss_pred             CEEEEeecCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          82 IELHCLKVLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      ..-....|...|++++|-|... .++++++|++|.+|+-.--+-..++..|..-|+++.|+|||..+++++.||.+.+||
T Consensus       139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD  218 (603)
T KOG0318|consen  139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD  218 (603)
T ss_pred             ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence            4334556778999999999864 699999999999999665566677888999999999999999999999999999999


Q ss_pred             CCCCcceeEee---cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC----ceeEEEccCCeEEEE
Q psy9936         161 PTVQKPLASLL---CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP----INNLAFSQRGLLATS  233 (315)
Q Consensus       161 ~~~~~~~~~~~---~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~g~~~~~  233 (315)
                      -.+++.+..+.   +|.+.|..++|+||+..++|++.|.+++|||+.+. +++.++.....    -..+.|..|.++.++
T Consensus       219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWqkd~lItVS  297 (603)
T KOG0318|consen  219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQKDHLITVS  297 (603)
T ss_pred             CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence            99999999998   89999999999999999999999999999999998 89998876653    467788877788999


Q ss_pred             cCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhhHH
Q psy9936         234 RGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIVRE  272 (315)
Q Consensus       234 ~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (315)
                      .+|+|..+++                +++..+|+++++.+|+.++.+..+..-..
T Consensus       298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g  352 (603)
T KOG0318|consen  298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG  352 (603)
T ss_pred             cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence            9999997776                78999999999999999998877765443

>KOG0276|consensus

Probab=100.00  E-value=2.4e-32  Score=230.47  Aligned_cols=255  Identities=14%  Similarity=0.196  Sum_probs=224.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~   86 (315)
                      ...|.++.|+|....++++-.+|.+.|||.++...+..+. ...+|.+..|.+-.+++++|+ |..|++|+.+ ...++.
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~   92 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT   92 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence            7889999999999999999999999999999999999998 667999999999999999988 6799999995 455666


Q ss_pred             ee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeEEEEcCCC
Q psy9936          87 LK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNP-YNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        87 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      +. |...|.+++.+|.-.++++++.|-+|++||-+.+ .+.+++.+|...|.+++|+| |.+.+++++-|++|++|.+.+
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs  172 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS  172 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence            54 6699999999999999999999999999998755 67888999999999999999 667999999999999999999


Q ss_pred             CcceeEeecccccEEEEEECCCC--CEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEE--EEcCCEE
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTG--TYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLA--TSRGNIV  238 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~--~~~~~~i  238 (315)
                      ..+..++.+|...|+|+.+-|.|  .||++|+.|.+|+|||.++. .|++++.+|. .|..+.|+|.--++  ++.||++
T Consensus       173 ~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  173 PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccE
Confidence            99999999999999999998765  59999999999999999999 9999999998 69999999987433  3459999


Q ss_pred             EecCC----------------CceeecccccccccCCcchhhh
Q psy9936         239 EFLKP----------------PEINFEPRRKANKAGGSVQRAK  265 (315)
Q Consensus       239 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  265 (315)
                      ++|..                ++++-.+.+..++.|...+.+-
T Consensus       252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            99976                5565556666677776655433

>KOG1407|consensus

Probab=100.00  E-value=3.3e-32  Score=207.23  Aligned_cols=253  Identities=19%  Similarity=0.288  Sum_probs=214.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeec-CcEEEEE-eCCeEEEEeC-CCCE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHL-ETMFAVA-QKDWVYIYDN-QGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~-~~~~i~i~~~-~~~~   83 (315)
                      ...+.+++|+.+|..|++|+.|+++.+|+++..+......   |.+.|-.++|.|. ...++++ +|.+|++||+ .++.
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~   99 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC   99 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence            5788999999999999999999999999998886655443   7778999999984 4555555 5889999998 6777


Q ss_pred             EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          84 LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      ...+.....-..+.|+|+|.++++++.|..|.+.|.++.+.....+ ....+..++|+-++++++.....|.|.|.....
T Consensus       100 ~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps  178 (313)
T KOG1407|consen  100 TARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS  178 (313)
T ss_pred             EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence            7777777666778999999999999999999999999877766554 234578899998888888877889999999999


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEEc--CCEEE-
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATSR--GNIVE-  239 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~--~~~i~-  239 (315)
                      -+++.++++|.....||.|+|+|+|||+|+.|..+.+||+... -+++.+.-.. ||+.+.||.||+++|++  |-.|- 
T Consensus       179 Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  179 LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence            9999999999999999999999999999999999999999988 8888886555 89999999999988876  44444 


Q ss_pred             --------ecCC------CceeecccccccccCCcchhh
Q psy9936         240 --------FLKP------PEINFEPRRKANKAGGSVQRA  264 (315)
Q Consensus       240 --------~~~~------~~~~~~~~~~~~~~~~~~~~~  264 (315)
                              +|..      ..++|+|...+||.+..++.-
T Consensus       258 A~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~  296 (313)
T KOG1407|consen  258 AEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDG  296 (313)
T ss_pred             EecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCC
Confidence                    4444      789999999999988877644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.8e-31  Score=218.58  Aligned_cols=232  Identities=20%  Similarity=0.340  Sum_probs=203.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~   86 (315)
                      ...+..+.|+|++++|++++.+|.|++|++.+++....+. +...+.++.|+|++.+++++. ++.+.+|++. +.....
T Consensus        51 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  130 (289)
T cd00200          51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT  130 (289)
T ss_pred             CcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE
Confidence            5677899999999999999999999999999877766666 667899999999999999888 9999999996 444444


Q ss_pred             ee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          87 LK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        87 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      +. +...+.++.|+|++.++++++.++.+.+||+++++.+..+..|...+.++.|+|+++.+++++.++.|++||+++++
T Consensus       131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence            44 55789999999999899888889999999999888888888898899999999999999999999999999999998


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EEEEcCCEEEecC
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LATSRGNIVEFLK  242 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~~~i~~~~  242 (315)
                      .+..+..|...+.++.|+|++.++++++.|+.|++||+.++ .+...+..+. .+.+++|+|++.  ++++.|+.+++|+
T Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            88888789999999999999989998888999999999987 7777777665 699999999974  4445688999885

>KOG1272|consensus

Probab=100.00  E-value=2.1e-33  Score=229.39  Aligned_cols=239  Identities=56%  Similarity=1.007  Sum_probs=225.9

Q ss_pred             ccEEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC
Q psy9936           2 TKQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus         2 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~   80 (315)
                      +|.|+|.+ ..+.+.+.|+.+|++|+.|+..|.+..+|+.++++...+...+.|.++.|.++.+++|+++...++|||-.
T Consensus       120 ~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~  199 (545)
T KOG1272|consen  120 TKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN  199 (545)
T ss_pred             HhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC
Confidence            47899999 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          81 GIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      |.++++++....|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|.
T Consensus       200 GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  200 GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence            99999999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCEEEe
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEF  240 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~i~~  240 (315)
                      ..+.+++..+.+|.++|.+|++.|+|+|+||++.|..++|||+++. ..+.++....+...+++|..|+++++.+..+.+
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~i  358 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-YQLHTYRTPHPASNLSLSQKGLLALSYGDHVQI  358 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-cccceeecCCCccccccccccceeeecCCeeee
Confidence            9999999999999999999999999999999999999999999998 666666666678999999999998888888775


Q ss_pred             c
Q psy9936         241 L  241 (315)
Q Consensus       241 ~  241 (315)
                      |
T Consensus       359 w  359 (545)
T KOG1272|consen  359 W  359 (545)
T ss_pred             e
Confidence            5

>KOG0306|consensus

Probab=100.00  E-value=1.4e-31  Score=230.15  Aligned_cols=267  Identities=10%  Similarity=0.136  Sum_probs=227.4

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      +++.+ ...|.++++|.+...+++|+ .+.|.+|+..+.++++++... -+.+..|.|.+++++.|. .|.+.+||+...
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            44455 78899999999887777765 568999999999999999755 788999999999999887 789999998433


Q ss_pred             -EEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-----CeEEEEec-------cCCCCeEEEEEcCCCCEEE
Q psy9936          83 -ELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-----GKIVSDFS-------AKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        83 -~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~-------~~~~~v~~~~~~p~~~~l~  148 (315)
                       .+..+ .|.+.+++++.+||+..+++|+.|.+|++||..-     |.....+.       .-...|.++.+||||++|+
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence             33333 5779999999999999999999999999999752     21111111       1245699999999999999


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccC
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQR  227 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~  227 (315)
                      ++--|.+++||-+++-+..-++.||.-||.|+..|||+++++|||.|.+|++|-+.-| .|.+.+..|. .|.++.|-|.
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V~F~P~  603 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSVQFLPK  603 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCceeEEEEccc
Confidence            9999999999999999988899999999999999999999999999999999999999 8999988887 6999999998


Q ss_pred             Ce--EEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhhHHHh
Q psy9936         228 GL--LATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIVRETA  274 (315)
Q Consensus       228 g~--~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (315)
                      ..  +.++-|+.++.|+.                ++++.+|+|.++++++.|..++.+....+..
T Consensus       604 ~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  604 THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            73  55666999999966                8899999999999999999999988776543

>KOG0289|consensus

Probab=100.00  E-value=1.3e-31  Score=217.06  Aligned_cols=254  Identities=18%  Similarity=0.296  Sum_probs=220.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC--CCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ--GIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~--~~~~~   85 (315)
                      ..+++++...|....+++|+.|..+.++|...++.+..+. |...|+.+.|+|+...+++++ |..|++|...  .....
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~  298 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS  298 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence            4578888888887899999999999999999999999988 888999999999988887776 8899999973  33344


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK--KGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      ...|..+|+.+..+|.|.||++++.|++..+.|++++..+......  .-.+++.+|+|||.+|.+|..|+.++|||+.+
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            4567799999999999999999999999999999999877765532  23489999999999999999999999999999


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC--CceeEEEccCCeEEEEcCCEEEec
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT--PINNLAFSQRGLLATSRGNIVEFL  241 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~~~~~~~~i~~~  241 (315)
                      +..+..|.+|.++|..++|+.+|.|||+++.|+.|++||++.. +.+.++....  ++.++.|++.|.+++.++..++++
T Consensus       379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            9999999999999999999999999999999999999999998 7788877665  599999999998877777776632


Q ss_pred             ---------CC-----------CceeecccccccccCCcchhh
Q psy9936         242 ---------KP-----------PEINFEPRRKANKAGGSVQRA  264 (315)
Q Consensus       242 ---------~~-----------~~~~~~~~~~~~~~~~~~~~~  264 (315)
                               .-           +.+.|....+++++++.+...
T Consensus       458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l  500 (506)
T KOG0289|consen  458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAIL  500 (506)
T ss_pred             EEecccccceeeehhhhcccccceeeecccceEEeeccchhhe
Confidence                     21           677888888899999888753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2e-30  Score=243.35  Aligned_cols=232  Identities=15%  Similarity=0.238  Sum_probs=194.9

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEee-cCcEEEEEe-CCeEEEEeCC-CCEE
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDNQ-GIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~~-~~~~   84 (315)
                      ...+.+++|+| ++.+|++++.||.|++||+.+++.+..+. |...|++++|+| ++.+|++++ |+.|++||+. +..+
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            56788999987 47899999999999999999998888776 889999999997 678888776 8999999995 5555


Q ss_pred             EEeecCCceEEEEEc-CCCceEEEEcCCCeEEEEEccCCe-EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          85 HCLKVLNKVTRMEFL-PYHFLLATASEEGYLSWLDTSIGK-IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        85 ~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      ..+.....+.++.|+ +++.+|++|+.||.|++||++++. .+..+.+|...|.++.|. ++.+|++++.|++|++||++
T Consensus       612 ~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        612 GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            566666789999995 468999999999999999998765 566778899999999997 67899999999999999997


Q ss_pred             C------CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec-------------cC-CCceeE
Q psy9936         163 V------QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR-------------TR-TPINNL  222 (315)
Q Consensus       163 ~------~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------~~-~~v~~~  222 (315)
                      .      ..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+.... .++..+.             .+ ..|.++
T Consensus       691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~V~~v  769 (793)
T PLN00181        691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP-MPVLSYKFKTIDPVSGLEVDDASQFISSV  769 (793)
T ss_pred             CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC-CceEEEecccCCcccccccCCCCcEEEEE
Confidence            4      3577889999999999999999999999999999999998765 4432221             11 248999


Q ss_pred             EEccCCe--EEEEcCCEEEecCC
Q psy9936         223 AFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       223 ~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                      +|+|++.  ++++.+|.|++|+.
T Consensus       770 ~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        770 CWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEcCCCCeEEEecCCCcEEEEec
Confidence            9999994  44456899999973

>KOG0277|consensus

Probab=100.00  E-value=2.9e-31  Score=201.43  Aligned_cols=253  Identities=16%  Similarity=0.260  Sum_probs=199.8

Q ss_pred             EEEEEEcCC-CCEEEEEc-------CCCeEEEEEccCceEE---EEecCCCceeEEEEeec--CcEEEEEeCCeEEEEeC
Q psy9936          13 IYRMNYTKN-GRHLLLGG-------KRGHVAAFDWVRKTLA---CEMNVMEEVYDIKWLHL--ETMFAVAQKDWVYIYDN   79 (315)
Q Consensus        13 v~~~~~s~~-~~~l~~~~-------~dg~i~v~~~~~~~~~---~~~~~~~~v~~~~~~~~--~~~l~~~~~~~i~i~~~   79 (315)
                      =+++.|||- .++||++.       ..|.+.|.++...+-+   ..+...+.+.+++|+++  ...+++.+||++++||.
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            368899992 23444332       3588999998644433   34456788999999996  44555667999999997


Q ss_pred             C--CCEEEEee-cCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCC
Q psy9936          80 Q--GIELHCLK-VLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGHRNG  154 (315)
Q Consensus        80 ~--~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~  154 (315)
                      .  ..++..++ |...|.++.|++. +..+++++.|++|++|+...++.++++.+|...|...+|+| .++++++++.|+
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~  170 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG  170 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence            3  45555554 5589999999985 56788889999999999999999999999999999999999 567999999999


Q ss_pred             eEEEEcCCCCcceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC---e
Q psy9936         155 TVTMWSPTVQKPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG---L  229 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g---~  229 (315)
                      ++++||++..-....+..|...|.++.|+.- .+.|+||+.|+.|+.||+++...++.++.+|. .|+.+.|||..   +
T Consensus       171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL  250 (311)
T KOG0277|consen  171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL  250 (311)
T ss_pred             eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence            9999999865444448899999999999974 56899999999999999999878899998887 79999999987   3


Q ss_pred             EEEEcCCEEEecCC-----------------Cceeecc-cccccccCCcchhhh
Q psy9936         230 LATSRGNIVEFLKP-----------------PEINFEP-RRKANKAGGSVQRAK  265 (315)
Q Consensus       230 ~~~~~~~~i~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~~  265 (315)
                      ..++.|-++++|++                 ..+.|++ +..++|+.+=|....
T Consensus       251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~  304 (311)
T KOG0277|consen  251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY  304 (311)
T ss_pred             hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence            45567999999998                 3455554 345666665555443

>KOG0319|consensus

Probab=100.00  E-value=2.2e-31  Score=228.48  Aligned_cols=232  Identities=13%  Similarity=0.155  Sum_probs=202.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE----EEEec-CCCceeEEEEeecC-cEEEEEe-CCeEEEEeCCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL----ACEMN-VMEEVYDIKWLHLE-TMFAVAQ-KDWVYIYDNQG-   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~-~~~~v~~~~~~~~~-~~l~~~~-~~~i~i~~~~~-   81 (315)
                      .+.|.+++...+|-+|++|+.|.++++|.++++..    +.... |...|.+++++..+ .+|++++ |.++++|++.. 
T Consensus       365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s  444 (775)
T KOG0319|consen  365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS  444 (775)
T ss_pred             hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence            67788888667788999999999999998844432    22233 88899999997754 5666554 99999999843 


Q ss_pred             ---CEEEE-------eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc
Q psy9936          82 ---IELHC-------LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        82 ---~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                         .....       ..|...|++++.+|+.+++|+|+.|.+.++|++.......++.+|...+.++.|+|..+.+++++
T Consensus       445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S  524 (775)
T KOG0319|consen  445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS  524 (775)
T ss_pred             ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc
Confidence               11111       23668999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-
Q psy9936         152 RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-  229 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-  229 (315)
                      .|++|+||.+.+..++++|.||...|..+.|-.+|..|++++.||-|++|++++. .|+.++..|. .|++++-+|.+. 
T Consensus       525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~DrvWaL~~~~~~~~  603 (775)
T KOG0319|consen  525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHNDRVWALSVSPLLDM  603 (775)
T ss_pred             CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccceeEEEeecCccce
Confidence            9999999999999999999999999999999999999999999999999999999 9999999987 599999999985 


Q ss_pred             -EEEEcCCEEEecC
Q psy9936         230 -LATSRGNIVEFLK  242 (315)
Q Consensus       230 -~~~~~~~~i~~~~  242 (315)
                       +.+++|+.|..|.
T Consensus       604 ~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  604 FVTGGGDGRIIFWK  617 (775)
T ss_pred             eEecCCCeEEEEee
Confidence             4456799999987

>KOG0275|consensus

Probab=100.00  E-value=3.9e-32  Score=213.15  Aligned_cols=261  Identities=14%  Similarity=0.189  Sum_probs=218.6

Q ss_pred             EeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---------CCCceeEEEEeecCcEEEEEe-CCeEE
Q psy9936           6 DLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---------VMEEVYDIKWLHLETMFAVAQ-KDWVY   75 (315)
Q Consensus         6 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~-~~~i~   75 (315)
                      .+.....+.|..|||||+||++|+.||-|.|||..+|++...+.         +..+|.|+.|+.|..++|+|+ ||.|+
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            34447788999999999999999999999999999998654432         557899999999999999987 99999


Q ss_pred             EEeC-CCCEEEEe--ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC
Q psy9936          76 IYDN-QGIELHCL--KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        76 i~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      +|.+ .|..++.+  .|...|+|+.|+.|+..+.+++.|.++++.-+.+|+++..+++|.+.|+...|.++|..+++++.
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence            9999 56666655  36689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCCcceeEeec--ccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC----CceeEEEc
Q psy9936         153 NGTVTMWSPTVQKPLASLLC--HKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT----PINNLAFS  225 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s  225 (315)
                      ||+|++|+..+.+++.+++.  ...+|+++-.-|. ...+++|...+++.|.++..  +.+..+....    ...+.+.|
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lS  446 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILS  446 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEec
Confidence            99999999999999998874  4457888887775 45899999999999999876  6777775432    46778899


Q ss_pred             cCC--eEEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhhh
Q psy9936         226 QRG--LLATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       226 ~~g--~~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      |.|  .|.++.|+.+..+..                -.++-+|....+++=+.++..+.|+
T Consensus       447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999  366677887774433                4566677777887777777665543

>KOG0276|consensus

Probab=100.00  E-value=7.3e-31  Score=221.61  Aligned_cols=253  Identities=11%  Similarity=0.110  Sum_probs=215.4

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeC-CeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQK-DWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-~~i~i~~~~~~   82 (315)
                      .++. +-||++..|-+.-+.+++|+.|..|+||+..+++.+..+. |.+-|.+++.+|...++.+++| -.|++||-++.
T Consensus        50 sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~  129 (794)
T KOG0276|consen   50 SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE  129 (794)
T ss_pred             eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence            4555 7889999999999999999999999999999999999999 9999999999999999988885 58999998653


Q ss_pred             --EEEEe-ecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC--CEEEEEcCCCeE
Q psy9936          83 --ELHCL-KVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN--ACICLGHRNGTV  156 (315)
Q Consensus        83 --~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~d~~i  156 (315)
                        ..+.+ .|...|.+++|+|. .+.+|+++.|++|++|.+.+..+..++++|...|+++.+-|.|  .+|++|++|.++
T Consensus       130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti  209 (794)
T KOG0276|consen  130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI  209 (794)
T ss_pred             eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence              23333 46689999999995 6899999999999999999999999999999999999998855  499999999999


Q ss_pred             EEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC-eEEEEc
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG-LLATSR  234 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g-~~~~~~  234 (315)
                      +|||..+..+++++.||...|..+.|+|.-..+++|+.||+++||+..+. +....+.... .+++++-.+.+ .++++.
T Consensus       210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            99999999999999999999999999999999999999999999999988 6666665443 68999987765 566676


Q ss_pred             CCEEEecCC----CceeecccccccccCC
Q psy9936         235 GNIVEFLKP----PEINFEPRRKANKAGG  259 (315)
Q Consensus       235 ~~~i~~~~~----~~~~~~~~~~~~~~~~  259 (315)
                      |......+.    ..+..++.|+.+-+..
T Consensus       289 Deg~i~v~lgreeP~vsMd~~gKIiwa~~  317 (794)
T KOG0276|consen  289 DEGSVTVKLGREEPAVSMDSNGKIIWAVH  317 (794)
T ss_pred             cCCcEEEEccCCCCceeecCCccEEEEcC
Confidence            654444333    5556666666555443

>KOG0293|consensus

Probab=99.98  E-value=5.4e-31  Score=212.38  Aligned_cols=239  Identities=13%  Similarity=0.143  Sum_probs=203.3

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCC--CceeEEEEeecCcEEEEEe-CCeEEEEeC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM--EEVYDIKWLHLETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~~~i~i~~~   79 (315)
                      .+++.. ..+|..+.||||.++|++++.+..+.+||..+|.....+.+.  ..+.+++|.|||..+++|+ |+++..||+
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            345555 889999999999999999999999999999999998888754  6899999999999888887 899999999


Q ss_pred             CCCEEEEeecC--CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEE
Q psy9936          80 QGIELHCLKVL--NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVT  157 (315)
Q Consensus        80 ~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  157 (315)
                      ++.........  ..|.+++.++||+++++.+.|..|++|+..+......+. ...+|++++.|.+|+++++.-.+..++
T Consensus       342 Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~  420 (519)
T KOG0293|consen  342 DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIH  420 (519)
T ss_pred             CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeE
Confidence            98776554432  679999999999999999999999999987654443333 446799999999999999999999999


Q ss_pred             EEcCCCCcceeEeecccccEE--EEEEC-CCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC---eE
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQ--SVAVN-HTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG---LL  230 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~--~~~~s-p~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g---~~  230 (315)
                      +||+...+.+..+.||...-.  .-+|- .+..++++||.|+.|+||+..++ .++..+.+|. .|++++|+|..   ..
T Consensus       421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhh
Confidence            999998889999999886433  33453 34579999999999999999999 9999999998 59999999987   23


Q ss_pred             EEEcCCEEEecCCC
Q psy9936         231 ATSRGNIVEFLKPP  244 (315)
Q Consensus       231 ~~~~~~~i~~~~~~  244 (315)
                      .|+.||+|++|.|.
T Consensus       500 SasDDgtIRIWg~~  513 (519)
T KOG0293|consen  500 SASDDGTIRIWGPS  513 (519)
T ss_pred             ccCCCCeEEEecCC
Confidence            45569999999863

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=2e-29  Score=220.94  Aligned_cols=232  Identities=13%  Similarity=0.135  Sum_probs=182.5

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE--------------EecCCCceeEEEEee-cCcEEEEEe-CCeEE
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC--------------EMNVMEEVYDIKWLH-LETMFAVAQ-KDWVY   75 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--------------~~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~   75 (315)
                      .|.....++++..+++++.+.....|+...+..+.              ...|.+.|.+++|+| ++.+|++++ |++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            34555667776667777777666777654443221              123778999999999 788888776 89999


Q ss_pred             EEeCCCC--------EEEE-eecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC
Q psy9936          76 IYDNQGI--------ELHC-LKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        76 i~~~~~~--------~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~  145 (315)
                      +||+...        .+.. ..|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+..|...|.+++|+|+|.
T Consensus       102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~  181 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS  181 (493)
T ss_pred             EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence            9998432        2223 3466889999999985 6999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEcCCCCcceeEeeccccc-EEEEEECCCCCEEEEee----CCCcEEEEEccCCCCCeeEeccCC--C
Q psy9936         146 CICLGHRNGTVTMWSPTVQKPLASLLCHKAG-IQSVAVNHTGTYMATSA----GDSQLRIWDVRNLEGPLNTFRTRT--P  218 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~sp~g~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~--~  218 (315)
                      +|++++.|+.|++||+++++.+..+.+|.+. +..+.|.|++..+++++    .|+.|++||+++...++.....+.  .
T Consensus       182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~  261 (493)
T PTZ00421        182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA  261 (493)
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence            9999999999999999999999888888764 45778999988777654    478999999998645665554333  4


Q ss_pred             ceeEEEccCCe--EEEE-cCCEEEecCC
Q psy9936         219 INNLAFSQRGL--LATS-RGNIVEFLKP  243 (315)
Q Consensus       219 v~~~~~s~~g~--~~~~-~~~~i~~~~~  243 (315)
                      +..+.|++++.  ++++ +|+.|++|+.
T Consensus       262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        262 LFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             eEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            56678999983  4444 5999999987

>KOG0283|consensus

Probab=99.98  E-value=1.2e-30  Score=227.44  Aligned_cols=232  Identities=18%  Similarity=0.271  Sum_probs=191.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC--------------------------------ce--------------
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR--------------------------------KT--------------   43 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~--------------------------------~~--------------   43 (315)
                      .+.|.++.||+||+|||+|+.|+.|+||.+..                                ..              
T Consensus       267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~  346 (712)
T KOG0283|consen  267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP  346 (712)
T ss_pred             CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence            78999999999999999999999999998654                                00              


Q ss_pred             --------------EEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEeecCCceEEEEEcC-CCceEE
Q psy9936          44 --------------LACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCLKVLNKVTRMEFLP-YHFLLA  106 (315)
Q Consensus        44 --------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~  106 (315)
                                    +++.+. |.+.|.++.|+.++.+|.++.|.+|++|++ ....+.++.|...|+|++|+| |.++|+
T Consensus       347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             cccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence                          111222 667799999999988888888999999999 567888999999999999999 578999


Q ss_pred             EEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec--c------cccEE
Q psy9936         107 TASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC--H------KAGIQ  178 (315)
Q Consensus       107 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~------~~~i~  178 (315)
                      +|+.||.|+||++...+.+.-...+ .-|++++|.|||++.++|+.+|.+++|++...+....+.-  |      ...|+
T Consensus       427 SGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT  505 (712)
T KOG0283|consen  427 SGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT  505 (712)
T ss_pred             ecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence            9999999999999876665544444 6799999999999999999999999999998776655431  1      23799


Q ss_pred             EEEECCCCC-EEEEeeCCCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCeEE--EEcCCEEEecCC
Q psy9936         179 SVAVNHTGT-YMATSAGDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGLLA--TSRGNIVEFLKP  243 (315)
Q Consensus       179 ~~~~sp~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~--~~~~~~i~~~~~  243 (315)
                      ++.|.|... .+++.+.|..|||||.+.. .++..+++..   .-....|+.||.++  ++.|..|.+|+.
T Consensus       506 G~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  506 GLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             eeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            999998643 5777789999999999887 7888887654   24678999999644  445889999985

>KOG0316|consensus

Probab=99.98  E-value=3.4e-30  Score=193.64  Aligned_cols=233  Identities=20%  Similarity=0.193  Sum_probs=198.4

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEE-eCCeEEEEeCC-C
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQ-G   81 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~-~   81 (315)
                      .+.. +++|..+.|+-||+|.++++.|++|++|+...+.++.++. |...|.+++.+.|+..++++ +|..+.+||++ +
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence            3445 8999999999999999999999999999999999999998 77889999999887666655 59999999995 5


Q ss_pred             CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          82 IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG--KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        82 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      +..+.+. |...|+.+.|+.+...+++|+.|.++++||.++.  ++++.+......|.++..+  +..+++|+.||+++.
T Consensus        92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt  169 (307)
T KOG0316|consen   92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT  169 (307)
T ss_pred             eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence            5555554 5689999999999999999999999999999864  6888887777788888875  567999999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC---ceeEEEccCCe--EEEE
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP---INNLAFSQRGL--LATS  233 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~g~--~~~~  233 (315)
                      ||++.|+...-+  ...+|++++|++||+..+.++.|+++++.|-.++ +++..+++|..   -...+++....  +..+
T Consensus       170 ydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l~qsdthV~sgS  246 (307)
T KOG0316|consen  170 YDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS  246 (307)
T ss_pred             EEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeeecccceeEEecc
Confidence            999999765544  3568999999999999999999999999999999 99999998874   24556665543  4445


Q ss_pred             cCCEEEecCC
Q psy9936         234 RGNIVEFLKP  243 (315)
Q Consensus       234 ~~~~i~~~~~  243 (315)
                      .||.+..|+.
T Consensus       247 EDG~Vy~wdL  256 (307)
T KOG0316|consen  247 EDGKVYFWDL  256 (307)
T ss_pred             CCceEEEEEe
Confidence            6999999987

>KOG0277|consensus

Probab=99.97  E-value=2.2e-30  Score=196.68  Aligned_cols=238  Identities=18%  Similarity=0.313  Sum_probs=193.6

Q ss_pred             EeeCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEccC-ceEEEEec-CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCC
Q psy9936           6 DLDLQFGIYRMNYTKNG-RHLLLGGKRGHVAAFDWVR-KTLACEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         6 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~-~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~   80 (315)
                      .+...+++..++|+++- ..+++++.||++++||+.. ..++..++ |...|.++.|++- +..+++++ |++|++|+.+
T Consensus        56 s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   56 SYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             eeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence            34447889999999965 4777888999999999643 23555665 8899999999984 44455555 9999999984


Q ss_pred             -CCEEEEee-cCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeE
Q psy9936          81 -GIELHCLK-VLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGHRNGTV  156 (315)
Q Consensus        81 -~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i  156 (315)
                       .+.+.++. |...|...+|+|. .+++++++.|+.+++||++..-....+..|...+.++.|+. +.+.+++|+.|+.|
T Consensus       136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence             45555554 5588999999996 68999999999999999986544444889999999999998 55689999999999


Q ss_pred             EEEcCCCC-cceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCC--eEE
Q psy9936         157 TMWSPTVQ-KPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRG--LLA  231 (315)
Q Consensus       157 ~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g--~~~  231 (315)
                      +.||+++- .++..+.+|.-.|..+.|||. ...||+++.|-+++|||.......+.....|.. +..+.||+-.  .++
T Consensus       216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence            99999974 678899999999999999997 458999999999999999876577777888875 7889998853  333


Q ss_pred             E-EcCCEEEecCC
Q psy9936         232 T-SRGNIVEFLKP  243 (315)
Q Consensus       232 ~-~~~~~i~~~~~  243 (315)
                      . +.|+.+.+|+|
T Consensus       296 s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  296 STGWDELLYVWNP  308 (311)
T ss_pred             ecccccceeeecc
Confidence            3 34999999986

>KOG0296|consensus

Probab=99.97  E-value=1.1e-29  Score=201.90  Aligned_cols=236  Identities=16%  Similarity=0.222  Sum_probs=193.8

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      .+++.. ++.|+++.||.+|.+||+|..+|.|+||...++.....+. .-+.+--+.|+|.+.+|+.|+ ||.+.+|.+.
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            355666 8999999999999999999999999999999999888775 556788899999998888886 8999999995


Q ss_pred             C-CEEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCC-------------------------
Q psy9936          81 G-IELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG-------------------------  133 (315)
Q Consensus        81 ~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------------------------  133 (315)
                      . ...+. ..|..++++=.|.|+|+.++++..||+|++||+.++++++.+....+                         
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence            4 33333 45668999999999999999999999999999999988776641000                         


Q ss_pred             --------------------------CeEEEEE---cCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECC
Q psy9936         134 --------------------------KLSVMTQ---NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNH  184 (315)
Q Consensus       134 --------------------------~v~~~~~---~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp  184 (315)
                                                .+.++.+   +..-.+.|+|+.||+|.|||+...+..+.+. |..+|..+.|-+
T Consensus       259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~  337 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN  337 (399)
T ss_pred             EEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC
Confidence                                      0111111   2222467889999999999999887666665 999999999998


Q ss_pred             CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeE--EEEcCCEEEecC
Q psy9936         185 TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLL--ATSRGNIVEFLK  242 (315)
Q Consensus       185 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~--~~~~~~~i~~~~  242 (315)
                       ..+|++++.+|.|+.||.+++ +++..+.+|. +|.+++.+|++.+  .++.|++.+++.
T Consensus       338 -t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  338 -TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             -cchheeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence             789999999999999999999 9999999998 7999999999953  445678777765

>KOG0265|consensus

Probab=99.97  E-value=9.8e-30  Score=197.35  Aligned_cols=234  Identities=12%  Similarity=0.156  Sum_probs=199.7

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEE-Ee-CCeEEEEeCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAV-AQ-KDWVYIYDNQ   80 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~-~~~i~i~~~~   80 (315)
                      ..+++ .++|..+.|.+|++.|++++.|.+++.||.++|+....+. |...|+.+.-+.-|..+++ ++ |+++++||+.
T Consensus        84 ~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen   84 WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             eeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            45566 8899999999999999999999999999999999998888 7888888884444555554 44 7999999996


Q ss_pred             CC-EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          81 GI-ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        81 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      .+ .++++....+++++.|..++..+.+|+-|+.|++||++.+...+.+.+|..+|+.+..+|+|.++.+-+.|.++++|
T Consensus       164 ~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw  243 (338)
T KOG0265|consen  164 KKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW  243 (338)
T ss_pred             ccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEE
Confidence            44 44556666889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC----cceeEeecccc----cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-
Q psy9936         160 SPTVQ----KPLASLLCHKA----GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-  229 (315)
Q Consensus       160 d~~~~----~~~~~~~~~~~----~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-  229 (315)
                      |++..    .++..+.+|..    .....+|+|+++++.+|+.|..+++||.... ..+..+++|. .|+++.|+|... 
T Consensus       244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYKLPGHYGSVNEVDFHPTEPI  322 (338)
T ss_pred             EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc-cEEEEcCCcceeEEEeeecCCCcE
Confidence            98853    44666766542    3456799999999999999999999999987 8888999988 499999999984 


Q ss_pred             -EEEEcCCEEE
Q psy9936         230 -LATSRGNIVE  239 (315)
Q Consensus       230 -~~~~~~~~i~  239 (315)
                       +.++.|.+|.
T Consensus       323 ils~~sdk~i~  333 (338)
T KOG0265|consen  323 ILSCSSDKTIY  333 (338)
T ss_pred             EEEeccCceeE
Confidence             3445577764

>KOG0292|consensus

Probab=99.97  E-value=1.6e-30  Score=227.26  Aligned_cols=257  Identities=15%  Similarity=0.187  Sum_probs=221.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC-EEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI-ELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~-~~~~   86 (315)
                      ...|.+++|+|....++++--.|.|++||..-+.++..|. |.++|..+.|+|.+.++++|+ |-.|++|+.... .+.+
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            6788999999999999999999999999999999888887 999999999999999999988 568999999543 3333


Q ss_pred             -eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          87 -LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        87 -~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                       +.|...|..+.|++.-.++++++.|.+|+||+..+++++..+.+|...|.|..|+|....+++++-|.+|+|||+..-+
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence             5677999999999999999999999999999999999999999999999999999999999999999999999975210


Q ss_pred             -----------------------------ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC--CeeEec
Q psy9936         166 -----------------------------PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG--PLNTFR  214 (315)
Q Consensus       166 -----------------------------~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~--~~~~~~  214 (315)
                                                   .-+.+.||...|+-++|+|.-.++++|+.|..|++|.+... +  .+.+..
T Consensus       169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-KaWEvDtcr  247 (1202)
T KOG0292|consen  169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTCR  247 (1202)
T ss_pred             ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cceeehhhh
Confidence                                         01345689999999999999999999999999999999764 2  233455


Q ss_pred             cCC-CceeEEEccCC--eEEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         215 TRT-PINNLAFSQRG--LLATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       215 ~~~-~v~~~~~s~~g--~~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      +|. +|.++.|+|..  .+..+.|++|++|+.                +.++-+|...+.++|...+.+-.+
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence            666 69999999965  345567999999998                667788999999888877754433

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=8.4e-29  Score=217.02  Aligned_cols=220  Identities=14%  Similarity=0.173  Sum_probs=174.9

Q ss_pred             eeC-CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCce-------EEEEec-CCCceeEEEEeecC-cEEEEEe-CCeE
Q psy9936           7 LDL-QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKT-------LACEMN-VMEEVYDIKWLHLE-TMFAVAQ-KDWV   74 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~-~~~i   74 (315)
                      +.. .+.|.+++|+| ++++|++++.|++|++||+.++.       .+..+. |...|.+++|+|++ .+|++++ |+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            344 68899999999 88999999999999999987652       344555 88899999999975 6777765 8999


Q ss_pred             EEEeCCC-CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC-eEEEEEcCCCCEEEEEc
Q psy9936          75 YIYDNQG-IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK-LSVMTQNPYNACICLGH  151 (315)
Q Consensus        75 ~i~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~  151 (315)
                      ++||+.. ..+..+. |...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|.+. ...+.|.|++..+++++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G  230 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG  230 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence            9999954 4444444 5688999999999999999999999999999999998888888764 45678999888777654


Q ss_pred             ----CCCeEEEEcCCCCc-ceeEeecc-cccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccC--CCceeE
Q psy9936         152 ----RNGTVTMWSPTVQK-PLASLLCH-KAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTR--TPINNL  222 (315)
Q Consensus       152 ----~d~~i~i~d~~~~~-~~~~~~~~-~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~  222 (315)
                          .|+.|++||+++.. ++.....+ ...+..+.|+|++++|++++ .|+.|++||+.++ .++......  .++..+
T Consensus       231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~~~~~s~~~~~g~  309 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFCSSYSSVEPHKGL  309 (493)
T ss_pred             cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEEeeccCCCCCcce
Confidence                47899999998754 44444323 34566778999999999887 5999999999988 766655433  356777


Q ss_pred             EEccC
Q psy9936         223 AFSQR  227 (315)
Q Consensus       223 ~~s~~  227 (315)
                      +|.|.
T Consensus       310 ~~~pk  314 (493)
T PTZ00421        310 CMMPK  314 (493)
T ss_pred             Eeccc
Confidence            77774

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.4e-28  Score=216.84  Aligned_cols=215  Identities=13%  Similarity=0.219  Sum_probs=169.1

Q ss_pred             EcCCCeEEEEEccCceEEEEec-CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCC-CE--------EEE-eecCCceE
Q psy9936          28 GGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQG-IE--------LHC-LKVLNKVT   94 (315)
Q Consensus        28 ~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~-~~--------~~~-~~~~~~v~   94 (315)
                      |+.++.|++|+......+..+. |.+.|.+++|+|+ +.+|++++ |+.|++||+.. ..        +.. ..|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            4557889999987766666666 8899999999996 77888776 89999999843 11        112 34668899


Q ss_pred             EEEEcCCCce-EEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc
Q psy9936          95 RMEFLPYHFL-LATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus        95 ~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  173 (315)
                      +++|+|++.. |++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            9999999865 5788999999999999998777775 5678999999999999999999999999999999999999999


Q ss_pred             cccEEE-----EEECCCCCEEEEeeCCC----cEEEEEccCCCCCeeEeccCCC--ceeEEEcc-CCe-EE-EEcCCEEE
Q psy9936         174 KAGIQS-----VAVNHTGTYMATSAGDS----QLRIWDVRNLEGPLNTFRTRTP--INNLAFSQ-RGL-LA-TSRGNIVE  239 (315)
Q Consensus       174 ~~~i~~-----~~~sp~g~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~-~g~-~~-~~~~~~i~  239 (315)
                      .+.+..     ..|++++.+|++++.|+    .|+|||+++...++..+..+..  +....|.+ +|. ++ +++|++|+
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr  288 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR  288 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence            876533     34568999999988774    7999999965477777665543  22234444 464 33 34799999


Q ss_pred             ecCC
Q psy9936         240 FLKP  243 (315)
Q Consensus       240 ~~~~  243 (315)
                      .|+.
T Consensus       289 ~~e~  292 (568)
T PTZ00420        289 YYQH  292 (568)
T ss_pred             EEEc
Confidence            8865

>KOG0645|consensus

Probab=99.97  E-value=3.8e-29  Score=191.53  Aligned_cols=223  Identities=15%  Similarity=0.235  Sum_probs=185.5

Q ss_pred             EEec-CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCC-CCEEEEe-----ecCCceEEEEEcCCCceEEEEcCCCeEEE
Q psy9936          46 CEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQ-GIELHCL-----KVLNKVTRMEFLPYHFLLATASEEGYLSW  116 (315)
Q Consensus        46 ~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~-~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  116 (315)
                      +.+. |.+.+..++|+|- |.+||+++ |..|++|+.. +....+.     .|...|.+++|+|.|++|++++.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            3344 7788999999998 88888876 8999999996 4433332     26689999999999999999999999999


Q ss_pred             EEccCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC---cceeEeecccccEEEEEECCCCCEEEE
Q psy9936         117 LDTSIG--KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ---KPLASLLCHKAGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       117 ~d~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~sp~g~~l~~  191 (315)
                      |.-..+  +++..+.+|...|.+++|+++|++||++++|..|.||.+..+   +++..++.|...|..+.|+|...+|++
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence            986544  688889999999999999999999999999999999998754   567788899999999999999999999


Q ss_pred             eeCCCcEEEEEccCC--CCCeeEeccCC-CceeEEEccCC-e-EEEEcCCEEEecCC------------Cceeecccccc
Q psy9936         192 SAGDSQLRIWDVRNL--EGPLNTFRTRT-PINNLAFSQRG-L-LATSRGNIVEFLKP------------PEINFEPRRKA  254 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~--~~~~~~~~~~~-~v~~~~~s~~g-~-~~~~~~~~i~~~~~------------~~~~~~~~~~~  254 (315)
                      +|.|++|++|.-...  -.+++.+..|. .|.+++|+|+| + ..++.|+++++|..            ..++|.  ...
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~  245 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGV  245 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--ccc
Confidence            999999999987632  16788888887 69999999999 3 34556899999983            456776  557


Q ss_pred             cccCCcchhhhhhhhh
Q psy9936         255 NKAGGSVQRAKVKKIV  270 (315)
Q Consensus       255 ~~~~~~~~~~~~~~~~  270 (315)
                      |++++.+..++.-+..
T Consensus       246 IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  246 IASGGGDDAIRLFKES  261 (312)
T ss_pred             eEeccCCCEEEEEEec
Confidence            8888877766554433

>KOG0293|consensus

Probab=99.97  E-value=3.6e-30  Score=207.65  Aligned_cols=258  Identities=12%  Similarity=0.173  Sum_probs=208.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce---EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT---LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~   83 (315)
                      .+.|.-+.||++|+|||+++.|.+..+|.+....   +..++. |..+|..+.|+||.++|++++ +..+.+||..+ ..
T Consensus       224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~  303 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL  303 (519)
T ss_pred             CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence            6889999999999999999999999999875433   344444 889999999999988777665 88899999954 44


Q ss_pred             EEEeecC--CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          84 LHCLKVL--NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK-KGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        84 ~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      ....++.  ..+.+++|.|||..+++|+.|+++..||++ |......++- ...|.+++.++||+++++.+.|..|++|+
T Consensus       304 ~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~  382 (519)
T KOG0293|consen  304 RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN  382 (519)
T ss_pred             hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence            4444444  678999999999999999999999999987 5444444432 24599999999999999999999999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC---ceeEEEccCC-eEEEE--c
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP---INNLAFSQRG-LLATS--R  234 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~g-~~~~~--~  234 (315)
                      ..+......+. ...+|++++.|.||+++++.-.+..+++||++.. ..+..+.+|..   +-.-||-.-. .++++  .
T Consensus       383 ~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE  460 (519)
T KOG0293|consen  383 REARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE  460 (519)
T ss_pred             hhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence            88765554444 4678999999999999999999999999999977 78888877763   3444554432 45555  4


Q ss_pred             CCEEEecCC----------------Cceeeccc-ccccccCCcchhhhhhhhh
Q psy9936         235 GNIVEFLKP----------------PEINFEPR-RKANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       235 ~~~i~~~~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~  270 (315)
                      |+.|++|..                ++++|+|. -.++|+++.|+++|.+...
T Consensus       461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            899999966                78999985 5789999999999988654

>KOG0281|consensus

Probab=99.97  E-value=1.3e-31  Score=211.89  Aligned_cols=223  Identities=14%  Similarity=0.268  Sum_probs=191.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~   86 (315)
                      ..+|+|+.+.  ...+++|..|.+|+|||..+..+...+. |.+.|.|+.|  +.+.+++|+ |.+|++||.++ ..+..
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence            5789999885  4689999999999999999888877766 9999999998  455777775 89999999954 44444


Q ss_pred             -eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          87 -LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK---IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        87 -~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                       +.|...|..+.|+  ..++++++.|.++.+||+.+..   ..+.+.+|...|+.+.|+  .+++++++.|.+|++|++.
T Consensus       273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence             4455889999997  4589999999999999998764   334467899999999986  4599999999999999999


Q ss_pred             CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCCeEEEEcCCEEEec
Q psy9936         163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRGLLATSRGNIVEFL  241 (315)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~~~~~~~~i~~~  241 (315)
                      +++.+.++.+|...|.|+.+  .|+++++|+.|.+|++||+..+ .++..+++|.. |.++.|...-.+.++.||+|++|
T Consensus       349 t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  349 TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW  425 (499)
T ss_pred             ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheeecCceeeeccccceEEEE
Confidence            99999999999999998876  5889999999999999999999 99999999985 89999986656666779999999


Q ss_pred             CC
Q psy9936         242 KP  243 (315)
Q Consensus       242 ~~  243 (315)
                      +.
T Consensus       426 dl  427 (499)
T KOG0281|consen  426 DL  427 (499)
T ss_pred             ec
Confidence            87

>KOG1407|consensus

Probab=99.97  E-value=2.1e-29  Score=191.99  Aligned_cols=222  Identities=13%  Similarity=0.149  Sum_probs=197.6

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEE
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~   86 (315)
                      .+.|-.++|+| ....+++++.|.+|++||...+++...+.....-.-+.|+|+|.+++++. |..|.+.|... +....
T Consensus        64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~  143 (313)
T KOG1407|consen   64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE  143 (313)
T ss_pred             CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence            55777888888 44689999999999999999999999988777777899999999999887 78899998854 43444


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                      ......+..+.|+.++++++.....|+|.|.....-+++..+..|+....++.|+|+|++||+|+.|..+.+||+..--+
T Consensus       144 ~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC  223 (313)
T KOG1407|consen  144 EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC  223 (313)
T ss_pred             hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh
Confidence            45557788999998888888888889999999999999999999999999999999999999999999999999998888


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEE
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLAT  232 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~  232 (315)
                      ++.+..+.-+|..++||.||++||++|.|..|-|-+++++ ..+..++..++...++|+|...++|
T Consensus       224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG-d~~~eI~~~~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  224 ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG-DRVWEIPCEGPTFTVAWHPKRPLLA  288 (313)
T ss_pred             heeeccccCceEEEEeccCcceeeccCccceEEeEecccC-CeEEEeeccCCceeEEecCCCceee
Confidence            9999989999999999999999999999999999999999 8899999999999999999985443

>KOG0310|consensus

Probab=99.97  E-value=7.3e-31  Score=215.65  Aligned_cols=255  Identities=16%  Similarity=0.291  Sum_probs=208.6

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEE-E
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIEL-H   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~-~   85 (315)
                      .++|.+++|||... -+|+.+. -.+.+|+..+......+. ....+.++.|-.||++|++|. .|.|++||.....+ .
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            78999999999665 3444443 469999998888777665 778899999999999999997 69999999654222 2


Q ss_pred             -EeecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCC
Q psy9936          86 -CLKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVTMWSPT  162 (315)
Q Consensus        86 -~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~  162 (315)
                       ...|..++..+.|+|.+ ..+++|++|+.+++||+.+......+.+|...|.+.+|+|-.. ++++|+.||.|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence             23577899999999975 5777888899999999998887667899999999999999654 88999999999999999


Q ss_pred             CC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCC--eEEEEcCCEE
Q psy9936         163 VQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRG--LLATSRGNIV  238 (315)
Q Consensus       163 ~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g--~~~~~~~~~i  238 (315)
                      +. ..+.++. |..+|.++.+-|.|..+|+++.. .+++||+-++.+.+.....| ..|+|+.+..++  ++.++-|+.+
T Consensus       185 ~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V  262 (487)
T KOG0310|consen  185 SLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV  262 (487)
T ss_pred             cCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce
Confidence            87 6677776 99999999999999999998766 69999999775666666644 479999999988  3555669999


Q ss_pred             EecCC---------------CceeecccccccccCCcchhhhhh
Q psy9936         239 EFLKP---------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       239 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      ++++.               .+++.+|+++.++.|-.++..-.+
T Consensus       263 KVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  263 KVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             EEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence            97764               688899999999888777744333

>KOG0306|consensus

Probab=99.97  E-value=1.3e-29  Score=217.99  Aligned_cols=233  Identities=18%  Similarity=0.233  Sum_probs=210.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC------C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ------G   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~------~   81 (315)
                      .+-+.+..|-|.++++++|...|.+.+||+.+...+.+++ |.+.+++++.+||+..+++++ |.+|++||..      +
T Consensus       412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g  491 (888)
T KOG0306|consen  412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG  491 (888)
T ss_pred             cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence            4567889999999999999999999999999998888777 999999999999999888876 8999999952      1


Q ss_pred             C--EE------EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          82 I--EL------HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        82 ~--~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                      .  ..      ..+.-...|.|+.+||||++|+++-.|.++++|-+++.+..-.+.+|.-||.+|..+||++.++||+.|
T Consensus       492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD  571 (888)
T KOG0306|consen  492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD  571 (888)
T ss_pred             ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC
Confidence            1  11      223344789999999999999999999999999999999989999999999999999999999999999


Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEE
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLAT  232 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~  232 (315)
                      ..|++|-++-|.+-+++-+|...|.++.|.|....+.+++.|+.|+-||-... ..++.+.+|. .|++++.+|+|.+++
T Consensus       572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-e~iq~L~~H~~ev~cLav~~~G~~vv  650 (888)
T KOG0306|consen  572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-EEIQKLDGHHSEVWCLAVSPNGSFVV  650 (888)
T ss_pred             CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh-hhheeeccchheeeeeEEcCCCCeEE
Confidence            99999999999999999999999999999999999999999999999999998 8888888876 699999999996555


Q ss_pred             E--cCCEEEecCC
Q psy9936         233 S--RGNIVEFLKP  243 (315)
Q Consensus       233 ~--~~~~i~~~~~  243 (315)
                      +  .|.+|+.|..
T Consensus       651 s~shD~sIRlwE~  663 (888)
T KOG0306|consen  651 SSSHDKSIRLWER  663 (888)
T ss_pred             eccCCceeEeeec
Confidence            4  4789999976

>KOG1446|consensus

Probab=99.97  E-value=4.7e-28  Score=189.49  Aligned_cols=249  Identities=12%  Similarity=0.124  Sum_probs=203.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEE-e--CCeEEEEeC-CCCEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVA-Q--KDWVYIYDN-QGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~--~~~i~i~~~-~~~~~   84 (315)
                      ...|.++.|+++|.++++++.|.++++||..+++...++. ....+..++|......+..+ .  |.+|+..++ +++-+
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            6889999999999999999999999999999999999888 55678889998765555444 3  789999999 55666


Q ss_pred             EEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          85 HCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        85 ~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      +.+. |...|.+++.+|-+..+++++.|++|++||++..++...+.....  ..++|.|.|-++|++.....|++||+|+
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecc
Confidence            6664 668999999999999999999999999999998877776654333  3478999999999998888999999996


Q ss_pred             C--cceeEee---cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC----ceeEEEccCCeEEE--
Q psy9936         164 Q--KPLASLL---CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP----INNLAFSQRGLLAT--  232 (315)
Q Consensus       164 ~--~~~~~~~---~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~g~~~~--  232 (315)
                      -  .+..++.   +.....+.+.|||||++++.+...+.+++.|.-.| .....+..+..    .-+.+|+||+.++.  
T Consensus       172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence            3  4555554   23567889999999999999999999999999998 78888776542    25889999996443  


Q ss_pred             EcCCEEEecCC-----------------CceeecccccccccCCcc
Q psy9936         233 SRGNIVEFLKP-----------------PEINFEPRRKANKAGGSV  261 (315)
Q Consensus       233 ~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~  261 (315)
                      +.||+|.+|+.                 .++.|.|.-.+.+++++.
T Consensus       251 s~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~  296 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN  296 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce
Confidence            34799999977                 566777877777776653

>KOG0772|consensus

Probab=99.97  E-value=3.9e-30  Score=212.76  Aligned_cols=228  Identities=18%  Similarity=0.269  Sum_probs=178.2

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce----EEEEec--CCCceeEEEEeecCcEEE-EEeCCeEEEEe
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT----LACEMN--VMEEVYDIKWLHLETMFA-VAQKDWVYIYD   78 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~--~~~~v~~~~~~~~~~~l~-~~~~~~i~i~~   78 (315)
                      +.. ...|.++++.|.|..|++|+.|..|++||+....    ..+.+.  ....|++++|++.|..|+ +++....+|+|
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            344 6778999999999999999999999999987543    223333  345799999999876554 45578899999


Q ss_pred             CCCCEEEEe--------------ecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCe-EEEEec-----cCCCCeEE
Q psy9936          79 NQGIELHCL--------------KVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGK-IVSDFS-----AKKGKLSV  137 (315)
Q Consensus        79 ~~~~~~~~~--------------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~-~~~~~~-----~~~~~v~~  137 (315)
                      .+|.++...              .|...++|.+|+|.. ..|++++.||++++||+...+ ....+.     +..-+++.
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts  322 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS  322 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence            987665432              255788999999975 578999999999999997643 222332     22345889


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEcCCCC--cceeEe-ecccc--cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         138 MTQNPYNACICLGHRNGTVTMWSPTVQ--KPLASL-LCHKA--GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       138 ~~~~p~~~~l~~~~~d~~i~i~d~~~~--~~~~~~-~~~~~--~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                      ++|+|+|++||+|+.||.|.+|+..+.  .+...+ .+|..  .|+||+||+||++|++-+.|+++++||++...+++..
T Consensus       323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence            999999999999999999999998653  222222 36776  9999999999999999999999999999988777776


Q ss_pred             eccC---CCceeEEEccCCeEEEEc
Q psy9936         213 FRTR---TPINNLAFSQRGLLATSR  234 (315)
Q Consensus       213 ~~~~---~~v~~~~~s~~g~~~~~~  234 (315)
                      ...-   .+-+.++|||+..++.++
T Consensus       403 ~tgL~t~~~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  403 RTGLPTPFPGTDCCFSPDDKLILTG  427 (641)
T ss_pred             hcCCCccCCCCccccCCCceEEEec
Confidence            5432   256899999999766655

>KOG0310|consensus

Probab=99.97  E-value=2e-29  Score=207.25  Aligned_cols=227  Identities=18%  Similarity=0.275  Sum_probs=192.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCCCEEE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQGIELH-   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~~~~~-   85 (315)
                      ...|+++.|-.||+++|+|...|.|+|||..+...+..+. |..++..+.|+|. +..+++|+ |+.+++||+.+..+. 
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~  147 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA  147 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE
Confidence            6789999999999999999999999999977766666666 8999999999996 56666676 568999999776553 


Q ss_pred             -EeecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          86 -CLKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        86 -~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                       ...|...|.|.+|+|. +..+++|+.||.|++||+++. ..+..+. |..+|..+.+-|.|..+++++. ..|++||+-
T Consensus       148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~  225 (487)
T KOG0310|consen  148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLT  225 (487)
T ss_pred             EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEec
Confidence             2357799999999996 568999999999999999977 5555554 8889999999999999999875 589999998


Q ss_pred             CC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe-EEEE-cCCEEE
Q psy9936         163 VQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL-LATS-RGNIVE  239 (315)
Q Consensus       163 ~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~-~~~~i~  239 (315)
                      +| +.+..+..|...|+|+.+..++..|++|+.|+.+++||+.+. +.+..+....+|.+++.+|++. ++++ .+|.+.
T Consensus       226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEeeecccceeeEEecCCCceEEEecccceee
Confidence            65 445555559999999999999999999999999999999888 9999999999999999999884 3333 466554

>KOG0305|consensus

Probab=99.97  E-value=2.1e-29  Score=214.03  Aligned_cols=253  Identities=15%  Similarity=0.236  Sum_probs=214.0

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEEee--
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHCLK--   88 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~~~--   88 (315)
                      .-++|+. .+.||+|. ...|++|+..++....... +.+.|+++.|+++|.+|++|. +|.|.|||.. .+.+..+.  
T Consensus       181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            3456774 44677664 4479999999988665555 378899999999999999997 8999999984 34444443  


Q ss_pred             cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce
Q psy9936          89 VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus        89 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~  167 (315)
                      |...|.+++|.  +..+.+|+.++.|..+|++..+.... +.+|...|+.++|++|++++|+|+.|+.+.|||.....++
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            56899999998  66799999999999999998765555 8889999999999999999999999999999999888999


Q ss_pred             eEeecccccEEEEEECCC-CCEEEEee--CCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC-eEEEE---cCCEEEe
Q psy9936         168 ASLLCHKAGIQSVAVNHT-GTYMATSA--GDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG-LLATS---RGNIVEF  240 (315)
Q Consensus       168 ~~~~~~~~~i~~~~~sp~-g~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~~~~---~~~~i~~  240 (315)
                      ..+..|.+.|..++|+|- ..+||+|+  .|++|++||..++ ..+..+.....|.++.|++.. .++++   ..+.|.+
T Consensus       337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l  415 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITL  415 (484)
T ss_pred             EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence            999999999999999996 56888874  6999999999999 999999888899999999988 34444   2567888


Q ss_pred             cCC----------------CceeecccccccccCCcchhhhhhhhhH
Q psy9936         241 LKP----------------PEINFEPRRKANKAGGSVQRAKVKKIVR  271 (315)
Q Consensus       241 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (315)
                      |+.                ..++++|||..+++|+.|.+.+.++.-.
T Consensus       416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            865                6788999999999999999988887554

>KOG0285|consensus

Probab=99.97  E-value=9.4e-30  Score=201.90  Aligned_cols=193  Identities=18%  Similarity=0.256  Sum_probs=175.6

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEE-EEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIEL-HCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS  126 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  126 (315)
                      |.+.|.++++.|.+.+|++++ |++++|||+.+..+ ..+. |...|..+++|+-..++++++.|+.|+.||+...+.++
T Consensus       150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR  229 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR  229 (460)
T ss_pred             ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH
Confidence            778899999999999999987 99999999965444 4454 67899999999999999999999999999999999999


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         127 DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       127 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      .+.+|-+.|.+++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|.++.+.|....+++||.|++|++||++.+
T Consensus       230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag  309 (460)
T KOG0285|consen  230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG  309 (460)
T ss_pred             HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             CCCeeEeccCC-CceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         207 EGPLNTFRTRT-PINNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       207 ~~~~~~~~~~~-~v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                       +....+..|. .+.+++.+|... ++.++-+.|+.|+.
T Consensus       310 -kt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~  347 (460)
T KOG0285|consen  310 -KTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKL  347 (460)
T ss_pred             -ceeEeeecccceeeEEecCCchhhhhccCCccceeccC
Confidence             7777777766 699999999985 55556788999987

>KOG0973|consensus

Probab=99.97  E-value=3.2e-29  Score=223.85  Aligned_cols=255  Identities=13%  Similarity=0.168  Sum_probs=209.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEc--CCCeEEEEEccC------------ceEEEEec-CCCceeEEEEeecCcEEEEEe-CCe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGG--KRGHVAAFDWVR------------KTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDW   73 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~--~dg~i~v~~~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~   73 (315)
                      +..|.+++.+|||..+|+|+  .||.++||+.+.            .+.+.+.. |.+.|+|+.|+|||++||+|+ |+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            66799999999999999999  899999998652            11233333 889999999999999999998 568


Q ss_pred             EEEEeCCC-----------C--------EE-EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCC
Q psy9936          74 VYIYDNQG-----------I--------EL-HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG  133 (315)
Q Consensus        74 i~i~~~~~-----------~--------~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  133 (315)
                      |.+|....           .        .. ....|...|..++|+|++.+|++++.|++|.+||..+.+.+..+.+|.+
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence            89998651           0        11 1234778999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc------ccEEEEEECCCCCEEEEee----CCCcEEEEEc
Q psy9936         134 KLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK------AGIQSVAVNHTGTYMATSA----GDSQLRIWDV  203 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~sp~g~~l~~~~----~d~~i~iwd~  203 (315)
                      .|-.+.|.|-|++||+-+.|++|++|++.+....+.+..+-      .-...+.|||||.||++..    .-.++.|.+-
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR  252 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER  252 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence            99999999999999999999999999988766666665432      3567899999999999863    2336889988


Q ss_pred             cCCCCCeeEeccCC-CceeEEEccC--------C-------e--EEE--EcCCEEEecCC-----------------Cce
Q psy9936         204 RNLEGPLNTFRTRT-PINNLAFSQR--------G-------L--LAT--SRGNIVEFLKP-----------------PEI  246 (315)
Q Consensus       204 ~~~~~~~~~~~~~~-~v~~~~~s~~--------g-------~--~~~--~~~~~i~~~~~-----------------~~~  246 (315)
                      .+. +.-..+-+|. ++..+.|+|-        |       .  ++|  +.|++|.+|..                 ..+
T Consensus       253 ~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dm  331 (942)
T KOG0973|consen  253 GTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDM  331 (942)
T ss_pred             CCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeee
Confidence            877 6666676666 7999999982        2       1  333  34899999965                 789


Q ss_pred             eecccccccccCCcchhhh
Q psy9936         247 NFEPRRKANKAGGSVQRAK  265 (315)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~  265 (315)
                      +|+|||..|..++.|+.+.
T Consensus       332 sWspdG~~LfacS~DGtV~  350 (942)
T KOG0973|consen  332 SWSPDGFSLFACSLDGTVA  350 (942)
T ss_pred             eEcCCCCeEEEEecCCeEE
Confidence            9999999999999888543

>KOG0640|consensus

Probab=99.97  E-value=2.1e-29  Score=196.62  Aligned_cols=258  Identities=14%  Similarity=0.223  Sum_probs=208.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC------------c------eEEEEe-cCCCceeEEEEeecCcEEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR------------K------TLACEM-NVMEEVYDIKWLHLETMFAVAQ   70 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~------------~------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~   70 (315)
                      ..++.+.+|||||.++|+|+.|-.|+|.|++.            +      -.++++ .|.+.|+++.|+|...+|++++
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s  191 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS  191 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence            78889999999999999999999999999861            1      133444 3889999999999999999987


Q ss_pred             -CCeEEEEeCCCCE----EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe---ccCCCCeEEEEEcC
Q psy9936          71 -KDWVYIYDNQGIE----LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF---SAKKGKLSVMTQNP  142 (315)
Q Consensus        71 -~~~i~i~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~p  142 (315)
                       |++|++||.....    ...+....+|.++.|+|.|.+|++|..-..+++||+.+.++...-   ..|.+.|+++.+++
T Consensus       192 rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~  271 (430)
T KOG0640|consen  192 RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS  271 (430)
T ss_pred             CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence             8999999985322    233455589999999999999999999999999999988765442   45888999999999


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCCcceeEee-ccc-ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC---
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQKPLASLL-CHK-AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT---  217 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---  217 (315)
                      .|++.++++.||.|++||--+++++.++. .|. +.|.+..|..+|+|+++++.|..+++|.+.++ .++..+.+.+   
T Consensus       272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tg  350 (430)
T KOG0640|consen  272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTG  350 (430)
T ss_pred             CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCccc
Confidence            99999999999999999998899998885 465 57899999999999999999999999999999 8888886542   


Q ss_pred             ---CceeEEEccCCeEEEEc---CCEEEecCC-----------------CceeecccccccccCCcchhhhhhh
Q psy9936         218 ---PINNLAFSQRGLLATSR---GNIVEFLKP-----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       218 ---~v~~~~~s~~g~~~~~~---~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                         --+...|+.+..++..-   .+.+..|+.                 ..+.-||.+....+++.+.++|.|.
T Consensus       351 rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  351 RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence               12455566555433332   344555544                 3445578888888898888777654

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=9.3e-28  Score=211.62  Aligned_cols=223  Identities=13%  Similarity=0.204  Sum_probs=171.8

Q ss_pred             EEeeC-CCcEEEEEEcCC-CCEEEEEcCCCeEEEEEccCce--------EEEEec-CCCceeEEEEeecCcEE-EEEe-C
Q psy9936           5 FDLDL-QFGIYRMNYTKN-GRHLLLGGKRGHVAAFDWVRKT--------LACEMN-VMEEVYDIKWLHLETMF-AVAQ-K   71 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~--------~~~~~~-~~~~v~~~~~~~~~~~l-~~~~-~   71 (315)
                      ..+.. ..+|.+++|+|+ +.+||+|+.||.|+|||+.++.        +...+. |...|.+++|+|++..+ ++++ |
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            34555 688999999996 7899999999999999997542        223344 78899999999988654 5554 8


Q ss_pred             CeEEEEeCCC-CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEE-----EEEcCCCC
Q psy9936          72 DWVYIYDNQG-IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSV-----MTQNPYNA  145 (315)
Q Consensus        72 ~~i~i~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~-----~~~~p~~~  145 (315)
                      +.|++||+.. ..+..+.+...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+..     ..|++++.
T Consensus       148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~  227 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN  227 (568)
T ss_pred             CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence            9999999954 44455666788999999999999999999999999999999999999999876433     23568989


Q ss_pred             EEEEEcCCC----eEEEEcCCC-CcceeEeec--ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCC--eeEeccC
Q psy9936         146 CICLGHRNG----TVTMWSPTV-QKPLASLLC--HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP--LNTFRTR  216 (315)
Q Consensus       146 ~l~~~~~d~----~i~i~d~~~-~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~  216 (315)
                      +|++++.|+    .|+|||+++ .+++..+..  +.+.+......++|.++++|+.|++|++|++..+ ..  +..+...
T Consensus       228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l~~~~s~  306 (568)
T PTZ00420        228 YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKVNEYKSC  306 (568)
T ss_pred             EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEeecccccC
Confidence            999887664    799999995 566665542  2233333334556889999999999999999875 32  2223333


Q ss_pred             CCceeEEEccCC
Q psy9936         217 TPINNLAFSQRG  228 (315)
Q Consensus       217 ~~v~~~~~s~~g  228 (315)
                      .+..+++|.|..
T Consensus       307 ~p~~g~~f~Pkr  318 (568)
T PTZ00420        307 SPFRSFGFLPKQ  318 (568)
T ss_pred             CCccceEEcccc
Confidence            468899999964

>KOG0305|consensus

Probab=99.97  E-value=8.4e-29  Score=210.33  Aligned_cols=232  Identities=13%  Similarity=0.203  Sum_probs=198.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC--EE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI--EL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~--~~   84 (315)
                      .+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.  |...|-+++|.  +..+.+|+ ++.|..+|+...  ..
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            7899999999999999999999999999998888777765  67889999998  55666665 899999998422  12


Q ss_pred             E-EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEc--CCCeEEEEc
Q psy9936          85 H-CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGH--RNGTVTMWS  160 (315)
Q Consensus        85 ~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~--~d~~i~i~d  160 (315)
                      . ...|...|..+.|++++.++|+|+.|+.+.|||.....+...+..|...|.+++|+| ...+||+|+  .|+.|++||
T Consensus       295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            2 234668999999999999999999999999999988888999999999999999999 455888875  599999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEe--eCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EEEEcC
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATS--AGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LATSRG  235 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~  235 (315)
                      ..++..+..+. -.+.|.++.|++..+-|+++  ..++.|.||+..+. .++..+.+|. .|..++++|||.  +++++|
T Consensus       375 ~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  375 TNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             cCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence            99999888876 46899999999998766654  45678999999998 8889998887 699999999994  556679


Q ss_pred             CEEEecCCCc
Q psy9936         236 NIVEFLKPPE  245 (315)
Q Consensus       236 ~~i~~~~~~~  245 (315)
                      .+++.|+.+.
T Consensus       453 ETlrfw~~f~  462 (484)
T KOG0305|consen  453 ETLRFWNLFD  462 (484)
T ss_pred             CcEEeccccC
Confidence            9999999643

>KOG0278|consensus

Probab=99.97  E-value=1.7e-30  Score=196.96  Aligned_cols=265  Identities=16%  Similarity=0.213  Sum_probs=229.7

Q ss_pred             eeC-CCcEEEEEEcC---CCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC-
Q psy9936           7 LDL-QFGIYRMNYTK---NGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-   79 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~---~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-   79 (315)
                      ..+ ..+|..++|||   +|-+|++++.||.-.+-+-++|..+-++. |.+.|++.....+....+++. |-+-++||. 
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~   89 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV   89 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence            344 78899999986   78899999999999999999999999998 999999999988877777765 778999997 


Q ss_pred             CCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe-EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          80 QGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK-IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      .+.+++.+.|..-|.+++|+.|.++|++|+.+.-+++||++..+ +...+.+|.+.|..+.|-...+.|+++..|++||+
T Consensus        90 tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL  169 (334)
T KOG0278|consen   90 TGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL  169 (334)
T ss_pred             hhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence            88899999999999999999999999999999999999998654 55668899999999999988889999999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe-EEEEc-CC
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL-LATSR-GN  236 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~~-~~  236 (315)
                      ||.++++.++++. ...+|+++..+++|++|.++ ..+.|.+||..+. .+++.+..+..|.+...+|+.- +++++ |.
T Consensus       170 WD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-~~lKs~k~P~nV~SASL~P~k~~fVaGged~  246 (334)
T KOG0278|consen  170 WDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-GLLKSYKMPCNVESASLHPKKEFFVAGGEDF  246 (334)
T ss_pred             EEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccc-cceeeccCccccccccccCCCceEEecCcce
Confidence            9999999999987 67899999999999977655 4557999999999 9999999999999999999874 44443 44


Q ss_pred             EEEecCC-----------------CceeecccccccccCCcchhhhhhhhhHHHh
Q psy9936         237 IVEFLKP-----------------PEINFEPRRKANKAGGSVQRAKVKKIVRETA  274 (315)
Q Consensus       237 ~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (315)
                      .++.++.                 -++.|+|+|..-++|+.|+.++.++....+.
T Consensus       247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            5553332                 6899999999999999999999988765543

>KOG0292|consensus

Probab=99.97  E-value=1.8e-28  Score=214.52  Aligned_cols=233  Identities=16%  Similarity=0.207  Sum_probs=202.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~   86 (315)
                      +++|..++|+|++.++++|+.|-.|+||+..+.+++.++. |.+-|..+.|++.-.++++++ |.+|+||+.. .+.+..
T Consensus        51 dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav  130 (1202)
T KOG0292|consen   51 DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV  130 (1202)
T ss_pred             CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE
Confidence            7999999999999999999999999999999999988876 999999999999999999888 6799999984 555655


Q ss_pred             ee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccC--------C---------------------eEEEEeccCCCCeE
Q psy9936          87 LK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI--------G---------------------KIVSDFSAKKGKLS  136 (315)
Q Consensus        87 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--------~---------------------~~~~~~~~~~~~v~  136 (315)
                      +. |...|.|..|+|....+++++.|.+|++||+..        +                     -..+.+.+|...|+
T Consensus       131 ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN  210 (1202)
T KOG0292|consen  131 LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN  210 (1202)
T ss_pred             EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc
Confidence            54 668999999999999999999999999999852        1                     01234678999999


Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEcCCCCc--ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         137 VMTQNPYNACICLGHRNGTVTMWSPTVQK--PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       137 ~~~~~p~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      .++|+|.-.++++|++|..|++|.....+  .+.+..+|.+.|.++-|+|...++++.|.|++|+|||+... ..++.++
T Consensus       211 waAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfr  289 (1202)
T KOG0292|consen  211 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFR  289 (1202)
T ss_pred             eEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeee
Confidence            99999999999999999999999987543  35566799999999999999999999999999999999988 8888886


Q ss_pred             c-CCCceeEEEccCC-eEEEEcCCEEEecCC
Q psy9936         215 T-RTPINNLAFSQRG-LLATSRGNIVEFLKP  243 (315)
Q Consensus       215 ~-~~~v~~~~~s~~g-~~~~~~~~~i~~~~~  243 (315)
                      . +...+.++-+|.. +++|+.|+-+.+++.
T Consensus       290 rendRFW~laahP~lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  290 RENDRFWILAAHPELNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             ccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence            5 4468999999987 677777887776654

>KOG0281|consensus

Probab=99.97  E-value=6.1e-30  Score=202.43  Aligned_cols=228  Identities=15%  Similarity=0.241  Sum_probs=190.8

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEE
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIEL   84 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~   84 (315)
                      +.+ .+.|.|+.|.  .+.|++|+.|.+|+|||+++++++.++- |.+.|..+.|+ +|-++.++.|.++.+||+....-
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~  309 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTD  309 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchH
Confidence            444 7899999986  4599999999999999999999988866 88999999996 34444444589999999854321


Q ss_pred             E-----EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 H-----CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      .     ...|...|+.+.|+  .+++++++.|.+|++|++.++..++++.+|...|.|+.+  .|+++++|+.|.+|++|
T Consensus       310 it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlw  385 (499)
T KOG0281|consen  310 ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW  385 (499)
T ss_pred             HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEE
Confidence            1     23566889999886  569999999999999999999999999999999988776  57899999999999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCC--------eeEeccCC-CceeEEEccCCeE
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP--------LNTFRTRT-PINNLAFSQRGLL  230 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~-~v~~~~~s~~g~~  230 (315)
                      |+..|.++..++||..-|.++.|.  .+.+++|+.||.|++||+..+..+        +..+..|+ .|..+.|..-..+
T Consensus       386 di~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIv  463 (499)
T KOG0281|consen  386 DIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQII  463 (499)
T ss_pred             eccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEE
Confidence            999999999999999999999994  678999999999999999876332        33344455 5899999876667


Q ss_pred             EEEcCCEEEecCC
Q psy9936         231 ATSRGNIVEFLKP  243 (315)
Q Consensus       231 ~~~~~~~i~~~~~  243 (315)
                      ..+.|.+|-+|+.
T Consensus       464 sssHddtILiWdF  476 (499)
T KOG0281|consen  464 SSSHDDTILIWDF  476 (499)
T ss_pred             eccCCCeEEEEEc
Confidence            7778999999984

>KOG0313|consensus

Probab=99.97  E-value=2.1e-28  Score=195.47  Aligned_cols=254  Identities=13%  Similarity=0.191  Sum_probs=200.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecC---cEEEEE-eCCeEEEEeCCCCEE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLE---TMFAVA-QKDWVYIYDNQGIEL-   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~~~~i~i~~~~~~~~-   84 (315)
                      ++.|.++...  ++.|++|++||.+++||...........|.+++.+++|....   ..|+++ .|.++++|..+.... 
T Consensus       105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~  182 (423)
T KOG0313|consen  105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK  182 (423)
T ss_pred             hhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence            4455555554  679999999999999997654444444599999988886532   235555 489999998743221 


Q ss_pred             -----EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-------------------------CeEEEEeccCCCC
Q psy9936          85 -----HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-------------------------GKIVSDFSAKKGK  134 (315)
Q Consensus        85 -----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------------------------~~~~~~~~~~~~~  134 (315)
                           .+..|...|.+++..++|..+++|+.|..|.+|+..+                         +.++.++.+|..+
T Consensus       183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~  262 (423)
T KOG0313|consen  183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP  262 (423)
T ss_pred             hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence                 2236779999999999999999999999999999321                         2356678899999


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC--CCeeE
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE--GPLNT  212 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~--~~~~~  212 (315)
                      |.++.|++ ...+++++.|.+|+.||+.++....++.+ ...++++..+|...+|++|+.|..|++||.++++  .+.+.
T Consensus       263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s  340 (423)
T KOG0313|consen  263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS  340 (423)
T ss_pred             eeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence            99999988 66899999999999999999998888874 6788999999999999999999999999999873  24455


Q ss_pred             eccCC-CceeEEEccCC---eEEEEcCCEEEecCC-----------------CceeecccccccccCCcchhhhhhh
Q psy9936         213 FRTRT-PINNLAFSQRG---LLATSRGNIVEFLKP-----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       213 ~~~~~-~v~~~~~s~~g---~~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      +.+|. -|.++.|+|..   ++.++.|++++.|+.                 .++.|. ++..+++|+.|++++.-+
T Consensus       341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence            66776 49999999987   345567999999988                 345553 466888999998776543

>KOG0647|consensus

Probab=99.97  E-value=5.2e-28  Score=188.00  Aligned_cols=228  Identities=18%  Similarity=0.222  Sum_probs=180.9

Q ss_pred             ccEEEeeC--CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccC-ceEEE--EecCCCceeEEEEeecCcEEEEEe-CCeE
Q psy9936           2 TKQFDLDL--QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVR-KTLAC--EMNVMEEVYDIKWLHLETMFAVAQ-KDWV   74 (315)
Q Consensus         2 ~~~~~~~~--~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~~~i   74 (315)
                      ++.|++..  ++.|.+++||| ...+++.++.||+||+|+++. |....  ...|.++|.+++|+.||..+++++ |+.+
T Consensus        17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~   96 (347)
T KOG0647|consen   17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA   96 (347)
T ss_pred             ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence            45677766  78999999999 445666899999999999976 44433  234889999999999998777765 9999


Q ss_pred             EEEeCCCCEEEE-eecCCceEEEEEcCCCc--eEEEEcCCCeEEEEEccCCeEEEEecc---------------------
Q psy9936          75 YIYDNQGIELHC-LKVLNKVTRMEFLPYHF--LLATASEEGYLSWLDTSIGKIVSDFSA---------------------  130 (315)
Q Consensus        75 ~i~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~---------------------  130 (315)
                      ++||+....... -.|..+|..+.|-+...  .|++|+.|.+|++||++...++.++..                     
T Consensus        97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r  176 (347)
T KOG0647|consen   97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER  176 (347)
T ss_pred             EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence            999996555555 45779999999988765  899999999999999997665554321                     


Q ss_pred             ----------------CC----CCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC--cceeEeecccc---------cEEE
Q psy9936         131 ----------------KK----GKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ--KPLASLLCHKA---------GIQS  179 (315)
Q Consensus       131 ----------------~~----~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~---------~i~~  179 (315)
                                      +.    -.+.+++..++....+.|+-+|.+.+..++.+  +.-.+|++|..         .|++
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence                            11    12567777788777889999999999888876  44456677763         5789


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeE
Q psy9936         180 VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLL  230 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~  230 (315)
                      |+|+|....|+|++.||++.+||-... ..+...+.+. +|++.+|+.+|.+
T Consensus       257 i~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             eEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecCCCCE
Confidence            999999999999999999999998877 6666665554 8999999999953

>KOG0973|consensus

Probab=99.96  E-value=5.7e-28  Score=215.89  Aligned_cols=232  Identities=18%  Similarity=0.249  Sum_probs=192.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC----------c--------eEEEEec-CCCceeEEEEeecCcEEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR----------K--------TLACEMN-VMEEVYDIKWLHLETMFAVAQ   70 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~----------~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~   70 (315)
                      .+.|.|+.|+|||++||+|+.|+.|.||....          |        +....+. |...|.+++|+|++.+|++++
T Consensus        69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS  148 (942)
T ss_pred             cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence            78999999999999999999999999998762          0        1334444 889999999999999999987


Q ss_pred             -CCeEEEEeCCCCE-EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC------CCeEEEEEc
Q psy9936          71 -KDWVYIYDNQGIE-LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK------GKLSVMTQN  141 (315)
Q Consensus        71 -~~~i~i~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~v~~~~~~  141 (315)
                       |++|.+|+....+ +..+ .|.+.|..+.|.|-|++||+-+.|++|++|++.+-...+.+..+.      ..+..+.||
T Consensus       149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence             9999999986543 3333 467899999999999999999999999999987766666655432      347789999


Q ss_pred             CCCCEEEEEcC----CCeEEEEcCCCCcceeEeecccccEEEEEECCC-------------CC----EEEEeeCCCcEEE
Q psy9936         142 PYNACICLGHR----NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHT-------------GT----YMATSAGDSQLRI  200 (315)
Q Consensus       142 p~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~-------------g~----~l~~~~~d~~i~i  200 (315)
                      |||.+|++...    -.++.|.+-.+.+.-..+-||.+++.++.|+|.             +.    .+|+|+.|++|.|
T Consensus       229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV  308 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV  308 (942)
T ss_pred             CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence            99999998642    347899998888888889999999999999982             11    5789999999999


Q ss_pred             EEccCCCCCeeEecc--CCCceeEEEccCC--eEEEEcCCEEEecC
Q psy9936         201 WDVRNLEGPLNTFRT--RTPINNLAFSQRG--LLATSRGNIVEFLK  242 (315)
Q Consensus       201 wd~~~~~~~~~~~~~--~~~v~~~~~s~~g--~~~~~~~~~i~~~~  242 (315)
                      |..... +|+..+..  ...|.+++|+|||  ++++|.||+|....
T Consensus       309 W~T~~~-RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  309 WNTALP-RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             EecCCC-CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence            999777 77766543  3369999999999  57788899999765

>KOG2096|consensus

Probab=99.96  E-value=5.1e-28  Score=189.47  Aligned_cols=253  Identities=16%  Similarity=0.169  Sum_probs=193.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE-----EEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCC--
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL-----ACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQ--   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~--   80 (315)
                      ...|++++|+.||++||+++.|+.|++|++.....     ++.--..+-.+.+.|.||-+-+++..  .+.+++|.+.  
T Consensus        86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~  165 (420)
T KOG2096|consen   86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK  165 (420)
T ss_pred             CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence            68899999999999999999999999999875332     11111223568899999977666553  6789999862  


Q ss_pred             --CCEEEE----------eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q psy9936          81 --GIELHC----------LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        81 --~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  148 (315)
                        |.....          ..|...+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.||+|++++
T Consensus       166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia  244 (420)
T KOG2096|consen  166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIA  244 (420)
T ss_pred             ccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEE
Confidence              211111          1133456667777778999999999999999999 999988887777778889999999999


Q ss_pred             EEcCCCeEEEEcCC---CC-----cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC------CCCeeEec
Q psy9936         149 LGHRNGTVTMWSPT---VQ-----KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL------EGPLNTFR  214 (315)
Q Consensus       149 ~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~------~~~~~~~~  214 (315)
                      +++---.|.+|.+-   .|     ..+.++.+|.+.|..++|||+...+++.|.||+++|||+.-.      ...+++..
T Consensus       245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~  324 (420)
T KOG2096|consen  245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS  324 (420)
T ss_pred             EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC
Confidence            99988889999842   22     346678899999999999999999999999999999998521      02233221


Q ss_pred             --c---CCCceeEEEccCCe-EEEEcCCEEEecCC-----------------CceeecccccccccCCcchh
Q psy9936         215 --T---RTPINNLAFSQRGL-LATSRGNIVEFLKP-----------------PEINFEPRRKANKAGGSVQR  263 (315)
Q Consensus       215 --~---~~~v~~~~~s~~g~-~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  263 (315)
                        .   ......++.+|+|. ++++.+.+++.+..                 .+++|+++|+++++++.--.
T Consensus       325 ~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~v  396 (420)
T KOG2096|consen  325 APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYV  396 (420)
T ss_pred             cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceee
Confidence              1   12345899999996 55666777875533                 78999999999999876543

>KOG0316|consensus

Probab=99.96  E-value=7.2e-28  Score=181.18  Aligned_cols=231  Identities=13%  Similarity=0.196  Sum_probs=194.5

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC--
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG--   81 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~--   81 (315)
                      ... ...|..++.+.|...+++++.|+.+.+||+.+|+..+.+. |.+.|+.++|+.+...+++++ |..+++||...  
T Consensus        55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s  134 (307)
T KOG0316|consen   55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS  134 (307)
T ss_pred             ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence            344 5678899999999999999999999999999999999998 999999999999999999887 99999999854  


Q ss_pred             -CEEEEeec-CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          82 -IELHCLKV-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        82 -~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                       .+++.+.. ...|.++..+  +..+++|+.||+++.||++.|+...-.-+  .+|++++|+++++..+.++.|+++++.
T Consensus       135 ~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLl  210 (307)
T KOG0316|consen  135 FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLL  210 (307)
T ss_pred             CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeec
Confidence             33344433 3778888776  56799999999999999999987665544  479999999999999999999999999


Q ss_pred             cCCCCcceeEeecccccEEE--EEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC--ceeEEEccCC-eEEEEc
Q psy9936         160 SPTVQKPLASLLCHKAGIQS--VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP--INNLAFSQRG-LLATSR  234 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~--~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~g-~~~~~~  234 (315)
                      |-.+|+.+..+.+|.+.-..  .+++....++++|+.||.+++||+... ..+..+..++.  +.++.++|.. .++...
T Consensus       211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~-~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE-TQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc-eeeeeeccCCceeEEeeecccCccceeEec
Confidence            99999999999999875443  456666779999999999999999998 88888887773  6999999987 466666


Q ss_pred             CCEEEecC
Q psy9936         235 GNIVEFLK  242 (315)
Q Consensus       235 ~~~i~~~~  242 (315)
                      ++.+..|-
T Consensus       290 ~~~~~~~~  297 (307)
T KOG0316|consen  290 GHGDLFWY  297 (307)
T ss_pred             CCceecee
Confidence            66555553

>KOG0264|consensus

Probab=99.96  E-value=4.1e-28  Score=197.98  Aligned_cols=243  Identities=18%  Similarity=0.304  Sum_probs=189.7

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceE-----------EEEecCCCceeEEEEeec--CcEEEEEeCCeEE
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTL-----------ACEMNVMEEVYDIKWLHL--ETMFAVAQKDWVY   75 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~-----------~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~i~   75 (315)
                      ++.|+.+.+-|... .+|+.+..+.++|||.....-           +....|...-++++|++.  |.+|.++.|+.|.
T Consensus       124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~  203 (422)
T KOG0264|consen  124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC  203 (422)
T ss_pred             CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence            88899999999765 566778889999999764321           122336666788999985  5666666789999


Q ss_pred             EEeCCCCEE---------EEeecCCceEEEEEcCC-CceEEEEcCCCeEEEEEcc--CCeEEEEeccCCCCeEEEEEcCC
Q psy9936          76 IYDNQGIEL---------HCLKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTS--IGKIVSDFSAKKGKLSVMTQNPY  143 (315)
Q Consensus        76 i~~~~~~~~---------~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~v~~~~~~p~  143 (315)
                      +||++....         ..-.|...|..++|++- ..+|++++.|+.+.|||++  +.++.....+|.+.+++++|+|-
T Consensus       204 lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~  283 (422)
T KOG0264|consen  204 LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF  283 (422)
T ss_pred             EEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence            999843211         11235588999999996 4688899999999999999  55666777899999999999995


Q ss_pred             -CCEEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCC-------------
Q psy9936         144 -NACICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLE-------------  207 (315)
Q Consensus       144 -~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~-------------  207 (315)
                       +.+||+|+.|++|.+||+|+. +++.++.+|...|.+|.|||. ...||+++.|+.+.|||+..-+             
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp  363 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP  363 (422)
T ss_pred             CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc
Confidence             558899999999999999984 678899999999999999998 4589999999999999997431             


Q ss_pred             CCeeEeccCC-CceeEEEccCCe---EEEEcCCEEEecCCCceeecccc
Q psy9936         208 GPLNTFRTRT-PINNLAFSQRGL---LATSRGNIVEFLKPPEINFEPRR  252 (315)
Q Consensus       208 ~~~~~~~~~~-~v~~~~~s~~g~---~~~~~~~~i~~~~~~~~~~~~~~  252 (315)
                      +++..-.+|. .|..+.|+|+.-   ..++.|+.+++|++....+.++.
T Consensus       364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~~e~  412 (422)
T KOG0264|consen  364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYNPED  412 (422)
T ss_pred             ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccccCccc
Confidence            1223334454 599999999982   34456999999998766665543

>KOG0282|consensus

Probab=99.96  E-value=1.7e-29  Score=207.43  Aligned_cols=220  Identities=17%  Similarity=0.290  Sum_probs=188.6

Q ss_pred             EEEec-CCCceeEEEEee-cCcEEEEEe-CCeEEEEeC--CCCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEE
Q psy9936          45 ACEMN-VMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDN--QGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLD  118 (315)
Q Consensus        45 ~~~~~-~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  118 (315)
                      +..+. |...|.++.|.| .+.+|++++ |+.|+||++  ++..++++. |..+|..++|+++|..|++++.|+.+++||
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            44455 888999999999 788888776 999999998  466777654 558999999999999999999999999999


Q ss_pred             ccCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCc
Q psy9936         119 TSIGKIVSDFSAKKGKLSVMTQNPYN-ACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~  197 (315)
                      +++|+++..+.. ...++++.|+|++ +.+++|+.|+.|+.||+|+++.++++..|-+.|..+.|-|+|+++++++.|++
T Consensus       287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence            999999999864 4468999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCCeeEeccCC--CceeEEEccCCeEEEE--cCCEEEecCC---------------------Cceeecccc
Q psy9936         198 LRIWDVRNLEGPLNTFRTRT--PINNLAFSQRGLLATS--RGNIVEFLKP---------------------PEINFEPRR  252 (315)
Q Consensus       198 i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~~~~--~~~~i~~~~~---------------------~~~~~~~~~  252 (315)
                      ++||+.+.. .+++.+..+.  ...++..+|++.++++  .|+.|.++..                     ..+.|||||
T Consensus       366 ~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  366 VRIWENRIP-VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             EEEEEcCCC-ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence            999999987 6666554433  4778999999965554  5777774433                     678999999


Q ss_pred             cccccCCcchhhhh
Q psy9936         253 KANKAGGSVQRAKV  266 (315)
Q Consensus       253 ~~~~~~~~~~~~~~  266 (315)
                      ++|++|+.++....
T Consensus       445 ~~l~SGdsdG~v~~  458 (503)
T KOG0282|consen  445 RTLCSGDSDGKVNF  458 (503)
T ss_pred             CeEEeecCCccEEE
Confidence            99999999986544

>KOG0313|consensus

Probab=99.96  E-value=2.2e-27  Score=189.71  Aligned_cols=237  Identities=15%  Similarity=0.229  Sum_probs=193.4

Q ss_pred             EEEeeC-CCcEEEEEEcCCCC---EEEEEcCCCeEEEEEccCceEEEE-----ecCCCceeEEEEeecCcEEEEEe-CCe
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGR---HLLLGGKRGHVAAFDWVRKTLACE-----MNVMEEVYDIKWLHLETMFAVAQ-KDW   73 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~---~l~~~~~dg~i~v~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~-~~~   73 (315)
                      .+.+.+ .++|.+++|.....   .+++++.|.++++|.++.+.....     -.|...|.+++..++|..+++++ |..
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~  216 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTM  216 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccce
Confidence            345555 77888777744333   599999999999999887664321     14888999999999999999887 999


Q ss_pred             EEEEeCCCC--------------------------EE-EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE
Q psy9936          74 VYIYDNQGI--------------------------EL-HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS  126 (315)
Q Consensus        74 i~i~~~~~~--------------------------~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  126 (315)
                      |.+|+....                          .+ ....|..+|.++.|++ ...+++++.|.+|+.||+.++..+.
T Consensus       217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~  295 (423)
T KOG0313|consen  217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS  295 (423)
T ss_pred             eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee
Confidence            999993110                          11 2234668999999998 5689999999999999999999888


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc---ceeEeecccccEEEEEECCCCC-EEEEeeCCCcEEEEE
Q psy9936         127 DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK---PLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWD  202 (315)
Q Consensus       127 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd  202 (315)
                      ++.. ...++++..+|..++|++|+.|..+++||.+++.   ..+++.+|.+.|.++.|+|... .|++++.|+++++||
T Consensus       296 ~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  296 TLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             eeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence            8775 4568999999999999999999999999999763   4567889999999999999865 688999999999999


Q ss_pred             ccCCCCCeeEeccCC-CceeEEEccCCeE-EEEcCCEEEecC
Q psy9936         203 VRNLEGPLNTFRTRT-PINNLAFSQRGLL-ATSRGNIVEFLK  242 (315)
Q Consensus       203 ~~~~~~~~~~~~~~~-~v~~~~~s~~g~~-~~~~~~~i~~~~  242 (315)
                      +++...++..+..|. .|.++.|+..+.+ .++.|++|+++.
T Consensus       375 vRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  375 VRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             eccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence            999845999998887 5999999987654 445699999865

>KOG0288|consensus

Probab=99.96  E-value=1.3e-28  Score=198.59  Aligned_cols=232  Identities=10%  Similarity=0.128  Sum_probs=192.3

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-C
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-I   82 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~   82 (315)
                      |.+ .++|+++.|.++++++++++.|+.+++|+++..+...++. |.+.|+++.|......+++++ |.+|++||+.. .
T Consensus       215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~  294 (459)
T KOG0288|consen  215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY  294 (459)
T ss_pred             hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence            344 6789999999999999999999999999999999988888 999999999988766566665 89999999954 3


Q ss_pred             EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          83 ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      ....+-....+..|..+  ...+++|..|++|++||.++..+......+. .|+++..+++|..+++++.|.++.+.|++
T Consensus       295 C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR  371 (459)
T KOG0288|consen  295 CSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR  371 (459)
T ss_pred             eeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc
Confidence            33444444666677666  5568899999999999999999998888765 89999999999999999999999999999


Q ss_pred             CCcceeEeecc----cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCeE--EEE
Q psy9936         163 VQKPLASLLCH----KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGLL--ATS  233 (315)
Q Consensus       163 ~~~~~~~~~~~----~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~--~~~  233 (315)
                      +......+...    ....+.+.|||++.|+|+||.||.|+||++.++ ++...+....   .|++++|+|.|..  .++
T Consensus       372 t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  372 TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             cccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            98877777632    234788999999999999999999999999998 7777776433   4999999999953  344


Q ss_pred             cCCEEEecC
Q psy9936         234 RGNIVEFLK  242 (315)
Q Consensus       234 ~~~~i~~~~  242 (315)
                      .+..+.+|.
T Consensus       451 k~~~v~lW~  459 (459)
T KOG0288|consen  451 KQKAVTLWT  459 (459)
T ss_pred             CCcceEecC
Confidence            456666663

>KOG0641|consensus

Probab=99.96  E-value=2.1e-26  Score=172.62  Aligned_cols=233  Identities=15%  Similarity=0.254  Sum_probs=186.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC--ceE---EEEec-CCCceeEEEEeec----CcEEEEEe--CCeEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR--KTL---ACEMN-VMEEVYDIKWLHL----ETMFAVAQ--KDWVYIY   77 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~--~~~---~~~~~-~~~~v~~~~~~~~----~~~l~~~~--~~~i~i~   77 (315)
                      .+.|+|.+|||+|++|++|+.|.+|++..+..  .+.   ...+. |.+.|..++|..+    +.+|++++  |..|++-
T Consensus        89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t  168 (350)
T KOG0641|consen   89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT  168 (350)
T ss_pred             CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence            78999999999999999999999999876543  221   22344 8899999999864    57788776  5567777


Q ss_pred             eC-CCCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc--C-----CCCeEEEEEcCCCCEEE
Q psy9936          78 DN-QGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA--K-----KGKLSVMTQNPYNACIC  148 (315)
Q Consensus        78 ~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~-----~~~v~~~~~~p~~~~l~  148 (315)
                      |. .++..+.+. |.+-|.++ ++-++-++++|+.|.+|++||++-...+.++..  |     .+.|.+++..|.|++|+
T Consensus       169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence            76 455555554 44666655 556788999999999999999998888877642  2     35689999999999999


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC---CCCeeEeccCC-CceeEEE
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL---EGPLNTFRTRT-PINNLAF  224 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~-~v~~~~~  224 (315)
                      +|..|....+||++.+++++.+..|...|.++.|||...|+++|+.|..|++-|+...   +-++.....|. .+..+.|
T Consensus       248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw  327 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW  327 (350)
T ss_pred             eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999753   12333333343 5788999


Q ss_pred             ccCCe--EEEEcCCEEEecCC
Q psy9936         225 SQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       225 s~~g~--~~~~~~~~i~~~~~  243 (315)
                      +|+..  +..+.|.+..+|..
T Consensus       328 h~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  328 HPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             cCccceeeeccCcceEEEecc
Confidence            99984  45567888888863

>KOG0643|consensus

Probab=99.96  E-value=9.5e-28  Score=183.62  Aligned_cols=234  Identities=14%  Similarity=0.185  Sum_probs=192.1

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC------CeEEEEe
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK------DWVYIYD   78 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~~i~i~~   78 (315)
                      ++.+ .+.|.|++.+-+.+++++|+.|.++++||.++|+.+..+....+|..+.|+++|++++.+.|      +.|.++|
T Consensus        47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd  126 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD  126 (327)
T ss_pred             eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEE
Confidence            3455 78999999999999999999999999999999999999999999999999999998887764      5799999


Q ss_pred             CC-------CCE-EEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEE
Q psy9936          79 NQ-------GIE-LHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        79 ~~-------~~~-~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~  148 (315)
                      +.       +++ ... ..+...++.+-|.|-+.+|++|..||.|..||+++| +.+...+.|...|+.|.++||..+++
T Consensus       127 i~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi  206 (327)
T KOG0643|consen  127 IRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFI  206 (327)
T ss_pred             ccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEE
Confidence            84       222 333 334588999999999999999999999999999998 45566678999999999999999999


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCc--------------EEEEEccCCCCCeeEec
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ--------------LRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~--------------i~iwd~~~~~~~~~~~~  214 (315)
                      +++.|.+-++||.++-+.++++. -..||++.+++|...+++.|+....              .++|++-.. +.+..++
T Consensus       207 T~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e-EEigrvk  284 (327)
T KOG0643|consen  207 TGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE-EEIGRVK  284 (327)
T ss_pred             ecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH-HHhcccc
Confidence            99999999999999999999887 5789999999998877776653321              222332222 4455666


Q ss_pred             cCC-CceeEEEccCCe-EEEE-cCCEEEec
Q psy9936         215 TRT-PINNLAFSQRGL-LATS-RGNIVEFL  241 (315)
Q Consensus       215 ~~~-~v~~~~~s~~g~-~~~~-~~~~i~~~  241 (315)
                      +|- ||++++|+|+|. |..+ .||.|++.
T Consensus       285 GHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  285 GHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             ccccCcceeEECCCCcccccCCCCceEEEE
Confidence            675 799999999996 4433 38888853

>KOG0275|consensus

Probab=99.96  E-value=4.6e-29  Score=195.98  Aligned_cols=212  Identities=15%  Similarity=0.211  Sum_probs=179.6

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE----------eecCCceEEEEEcCCCceEEEEcCCCeEEEEE
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC----------LKVLNKVTRMEFLPYHFLLATASEEGYLSWLD  118 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  118 (315)
                      ...-+-|..|+|||++|++++ ||.|.+|+..+..++.          ..+..+|.|+.|+.|...+|+|+.||.|++|.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            345578899999999999998 9999999984433221          22447899999999999999999999999999


Q ss_pred             ccCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCc
Q psy9936         119 TSIGKIVSDFS-AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ  197 (315)
Q Consensus       119 ~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~  197 (315)
                      +.+|.+++.|. .|...|+++.|+.|+..+++++.|.++++.-+.+|+++..+.+|.+-|+...|.++|.++++++.||+
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence            99999999987 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCCeeEeccCC---CceeEEEccCC--eEEEE-cCCEEEecCC------------------Cceeeccccc
Q psy9936         198 LRIWDVRNLEGPLNTFRTRT---PINNLAFSQRG--LLATS-RGNIVEFLKP------------------PEINFEPRRK  253 (315)
Q Consensus       198 i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g--~~~~~-~~~~i~~~~~------------------~~~~~~~~~~  253 (315)
                      |++|+..+. .++.+++...   +|+++..-|..  .++++ ..+++.+.+.                  .....||.|.
T Consensus       372 vkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  372 VKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE  450 (508)
T ss_pred             EEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc
Confidence            999999999 8998887543   68888887765  34444 4666665544                  3455677777


Q ss_pred             ccccCCcch
Q psy9936         254 ANKAGGSVQ  262 (315)
Q Consensus       254 ~~~~~~~~~  262 (315)
                      .+...+.++
T Consensus       451 wiYcigED~  459 (508)
T KOG0275|consen  451 WIYCIGEDG  459 (508)
T ss_pred             EEEEEccCc
Confidence            776666555

>KOG0639|consensus

Probab=99.96  E-value=2.2e-28  Score=202.01  Aligned_cols=259  Identities=15%  Similarity=0.164  Sum_probs=208.8

Q ss_pred             cEEEeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc---eEEEEec---CCCceeEEEEeecCcEEEEEe-CCeEE
Q psy9936           3 KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK---TLACEMN---VMEEVYDIKWLHLETMFAVAQ-KDWVY   75 (315)
Q Consensus         3 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~~~i~   75 (315)
                      ++..|...+-|.++.+|...+++.+|+ .|.|+|||+...   .++..+.   ...-+.++..+|||+.|++|+ -.++.
T Consensus       412 q~~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls  490 (705)
T KOG0639|consen  412 QINTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS  490 (705)
T ss_pred             hhhhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence            344445566778889999999999987 467999998643   2333333   345689999999999888887 56899


Q ss_pred             EEeCCCCEEEEe---ec-CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc
Q psy9936          76 IYDNQGIELHCL---KV-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        76 i~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                      |||+.....+..   .. ....++++.+||.+..++++.||.|.|||+.+...++.|++|...+.|+..++||..|-+|+
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG  570 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG  570 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC
Confidence            999954333221   11 14567899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEE
Q psy9936         152 RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLA  231 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~  231 (315)
                      -|.+|+.||++.++.+.... ..+.|.++..+|++.||++|-.++.+.|...... +..+.-...+-|.++.|.+-|++.
T Consensus       571 lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCcee
Confidence            99999999999998777655 5789999999999999999999999999888765 444333333468999999999754


Q ss_pred             EE--cCCEEEecCC---------------CceeecccccccccCCcchhh
Q psy9936         232 TS--RGNIVEFLKP---------------PEINFEPRRKANKAGGSVQRA  264 (315)
Q Consensus       232 ~~--~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~~  264 (315)
                      ++  .|+.+..|..               .+..+|-|.+++++|+.+++.
T Consensus       649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkA  698 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKA  698 (705)
T ss_pred             eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcce
Confidence            44  4777888865               677888999999999998753

>KOG0278|consensus

Probab=99.96  E-value=1.4e-28  Score=186.63  Aligned_cols=234  Identities=9%  Similarity=0.154  Sum_probs=201.0

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      .+.+ .+.|.+..++.+....|+++.|-+-+|||.-+|..+..+.|..-|..++|+.|.++|++++ +..+++||++..+
T Consensus        54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~  133 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK  133 (334)
T ss_pred             eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence            4555 7889999998888888999999999999999999999999999999999999988888876 7889999985432


Q ss_pred             ---EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          84 ---LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        84 ---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                         ...-.|.+.|..+.|....+.+++++.|++|++||.++++.++++.. ..+|+++.++++|++|.++ ..+.|.+||
T Consensus       134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwd  211 (334)
T KOG0278|consen  134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWD  211 (334)
T ss_pred             CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEec
Confidence               22345778999999999999999999999999999999999999874 5679999999999987665 457899999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEe-ccC-CCceeEEEccCCeEEE--EcCC
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF-RTR-TPINNLAFSQRGLLAT--SRGN  236 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~-~~v~~~~~s~~g~~~~--~~~~  236 (315)
                      ..+...++.+. ....|.+.+++|+...+++|+.|..++.||..++ ..+..+ ++| .+|.++.|+|||.+.+  +.||
T Consensus       212 aksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG  289 (334)
T KOG0278|consen  212 AKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG  289 (334)
T ss_pred             cccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCC-ceeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence            99999888887 5678899999999999999999999999999999 666664 444 4899999999996444  4599


Q ss_pred             EEEecCC
Q psy9936         237 IVEFLKP  243 (315)
Q Consensus       237 ~i~~~~~  243 (315)
                      +|++|..
T Consensus       290 TirlWQt  296 (334)
T KOG0278|consen  290 TIRLWQT  296 (334)
T ss_pred             eEEEEEe
Confidence            9999986

>KOG2055|consensus

Probab=99.96  E-value=1.1e-27  Score=195.78  Aligned_cols=256  Identities=17%  Similarity=0.281  Sum_probs=206.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC--ceEEEEec-CCCceeEEEEeecCc-EEEEEe-CCeEEEEeCCCCEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR--KTLACEMN-VMEEVYDIKWLHLET-MFAVAQ-KDWVYIYDNQGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~   84 (315)
                      +++|+++.|+|....+++++.||+++||.++.  ...++.+. ...+|.+.+|.|+|. .+++++ ...++.||+....+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            68999999999999999999999999998753  33455555 556899999999998 555555 67899999976665


Q ss_pred             EEeecC-----CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 HCLKVL-----NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ..+...     ..+.....+|++++|+..+..|.|++....+++.+..++. .+.|..++|+.||+.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            555433     3567788999999999999999999999999999988874 5679999999999999999999999999


Q ss_pred             cCCCCcceeEeecccccE--EEEEECCCCCEEEEeeCCCcEEEEEccCC-----CCCeeEecc-CCCceeEEEccCCeEE
Q psy9936         160 SPTVQKPLASLLCHKAGI--QSVAVNHTGTYMATSAGDSQLRIWDVRNL-----EGPLNTFRT-RTPINNLAFSQRGLLA  231 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i--~~~~~sp~g~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~-~~~v~~~~~s~~g~~~  231 (315)
                      |++...+++.+.. .+.|  ++++.|++|.|||+|+..|.|.|||..+.     .+|+..+.. -..|+++.|+||+.++
T Consensus       372 nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  372 NLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             ecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            9999999988873 3333  56778899999999999999999997542     145554433 3369999999999655


Q ss_pred             EEc----CCEEE-----------ecCC--------CceeecccccccccCCcchhhhhh
Q psy9936         232 TSR----GNIVE-----------FLKP--------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       232 ~~~----~~~i~-----------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      |-+    .+.++           -|.+        ++++|||.+.++|.|...++...+
T Consensus       451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            433    44555           2322        899999999999999988765543

>KOG1036|consensus

Probab=99.96  E-value=9.2e-27  Score=181.59  Aligned_cols=255  Identities=15%  Similarity=0.153  Sum_probs=203.7

Q ss_pred             EEeeC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC
Q psy9936           5 FDLDL--QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI   82 (315)
Q Consensus         5 ~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~   82 (315)
                      ++++.  .+.|.++.|+|.+..|++++.||.+++|+.........+.|..++.+++|.++...+..+.||.|+.+|+++.
T Consensus         6 ~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen    6 FELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             cccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence            45555  6889999999999999999999999999999998888899999999999999877777778999999999655


Q ss_pred             EEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          83 ELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        83 ~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .... ..|..++.|+.+++....+++|+.|++|++||.+....+..+.. ...|.++..  .|+.|++|+.+..+.+||+
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDL  162 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDL  162 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEc
Confidence            4444 45779999999999888999999999999999987555555543 336777765  5778999999999999999


Q ss_pred             CCCcceeEee--cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC---CCCeeEeccCC----------CceeEEEcc
Q psy9936         162 TVQKPLASLL--CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL---EGPLNTFRTRT----------PINNLAFSQ  226 (315)
Q Consensus       162 ~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~----------~v~~~~~s~  226 (315)
                      ++.....+..  ...-.+.++++-|++.-++.++-||.|.+=.+...   ...-..|+.|.          ||++++|+|
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            9865433222  34467899999999888999999998776555432   12223344431          689999999


Q ss_pred             CC--eEEEEcCCEEEecCC----------------CceeecccccccccCCcch
Q psy9936         227 RG--LLATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       227 ~g--~~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      -.  ++.+++||.|..|++                .+++|+.+|..||.+++-.
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~  296 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQ  296 (323)
T ss_pred             ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechh
Confidence            75  344556999999998                5688999999999887654

>KOG0641|consensus

Probab=99.96  E-value=8.6e-26  Score=169.30  Aligned_cols=231  Identities=17%  Similarity=0.283  Sum_probs=186.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc------Cc--------eEEE--EecCCCceeEEEEeecCcEEEEEe-CC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV------RK--------TLAC--EMNVMEEVYDIKWLHLETMFAVAQ-KD   72 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~------~~--------~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~~   72 (315)
                      ...|.+++|+|.|.+.++|+...+++|-...      .+        ..+.  .-.|.+.|+|.+|+|+|.++++++ |.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            6789999999999999999999998886432      11        1111  223778999999999999999998 77


Q ss_pred             eEEEEeCC-------CCEEEEeecCCceEEEEEcCC----CceEEEEc-CCCeEEEEEccCCeEEEEeccCCCCeEEE-E
Q psy9936          73 WVYIYDNQ-------GIELHCLKVLNKVTRMEFLPY----HFLLATAS-EEGYLSWLDTSIGKIVSDFSAKKGKLSVM-T  139 (315)
Q Consensus        73 ~i~i~~~~-------~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~-~  139 (315)
                      +|++...+       +..+..-.|.+.|..++|..+    +.+|++++ .|..|++-|...|+..+.+.+|.+.|.++ .
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys  191 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS  191 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence            88887542       334444557789999999754    45677665 46678888999999999999999998876 4


Q ss_pred             EcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec--c-----cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         140 QNPYNACICLGHRNGTVTMWSPTVQKPLASLLC--H-----KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       140 ~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~-----~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                      |  +|-.+++|+.|.+|++||++-+.++.++..  |     .+.|..++..|.|++|++|-.|.+..+||++.+ .+++.
T Consensus       192 w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~  268 (350)
T KOG0641|consen  192 W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQR  268 (350)
T ss_pred             e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeee
Confidence            4  577999999999999999998888877642  2     257899999999999999999999999999999 99999


Q ss_pred             eccCC-CceeEEEccCCe--EEEEcCCEEEecCC
Q psy9936         213 FRTRT-PINNLAFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       213 ~~~~~-~v~~~~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                      +..|. .|.++.|||...  +..+.|..|++-+.
T Consensus       269 f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  269 FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             eCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence            98887 699999999884  44556899985544

>KOG0274|consensus

Probab=99.96  E-value=7e-27  Score=205.39  Aligned_cols=231  Identities=17%  Similarity=0.290  Sum_probs=201.4

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEE-eCCeEEEEeCC-CC
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQ-GI   82 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~-~~   82 (315)
                      +.+ .++|.+++|..-+.+|++|+.|.+++|||..+|++...+. |.+.+.++...  ...+++| .|.+|++|+++ +.
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc
Confidence            455 7899999998878899999999999999999999999998 88888887754  3345554 49999999995 67


Q ss_pred             EEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          83 ELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        83 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .+..+. |..+|.++..+  +.++++|+.|++|.+||+.+++++..+.+|...|.++.+.+. ..+++|+.|++|++||+
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl  399 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL  399 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence            777777 88999999988  789999999999999999999999999999999999988765 89999999999999999


Q ss_pred             CCC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-C-CCceeEEEccCCeEEEEcCCEE
Q psy9936         162 TVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-R-TPINNLAFSQRGLLATSRGNIV  238 (315)
Q Consensus       162 ~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~s~~g~~~~~~~~~i  238 (315)
                      ++. +++..+.+|.+-+.++.+  .+++|++++.|++|++||..++ +++..+.. + ..|..+++...-.+.++.++++
T Consensus       400 ~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~  476 (537)
T KOG0274|consen  400 RTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVGGVSALALGKEEILCSSDDGSV  476 (537)
T ss_pred             CchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC-ceeeeeccCCcccEEEeecCcceEEEEecCCee
Confidence            999 999999999988866554  5789999999999999999999 99999988 3 4788888874446777889999


Q ss_pred             EecCCCc
Q psy9936         239 EFLKPPE  245 (315)
Q Consensus       239 ~~~~~~~  245 (315)
                      ++|+...
T Consensus       477 ~l~dl~~  483 (537)
T KOG0274|consen  477 KLWDLRS  483 (537)
T ss_pred             EEEeccc
Confidence            9998733

>KOG1446|consensus

Probab=99.96  E-value=9e-26  Score=176.78  Aligned_cols=236  Identities=12%  Similarity=0.160  Sum_probs=194.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC--CCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK--RGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~--dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~   85 (315)
                      +.++..++|......++.++.  |.+|+..++.+.+.++.+. |...|.+++.+|-+..+++++ |++|++||+....-.
T Consensus        56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence            557778888777777766665  7899999999999999998 999999999999766666655 999999999643333


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC--eEEEEecc---CCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG--KIVSDFSA---KKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      -+.+...-..++|.|.|-++|++.....|++||+++-  .+...+..   .....+.|.|+|||++|+.+...+.+.+.|
T Consensus       136 g~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD  215 (311)
T KOG1446|consen  136 GLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD  215 (311)
T ss_pred             eEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence            3333444456889999999999988889999999863  34444432   345689999999999999999999999999


Q ss_pred             CCCCcceeEeecccccE---EEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--CCceeEEEccCCeEEEEcC
Q psy9936         161 PTVQKPLASLLCHKAGI---QSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--TPINNLAFSQRGLLATSRG  235 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i---~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~~~~~~  235 (315)
                      .-+|..+.++..+...-   -..+|+|||+++++|+.||+|.+|+++++ ..+..+.+.  .++.++.|+|.-..+++++
T Consensus       216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLRGPNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEecCCCCCCccccccCCceeeeeecC
Confidence            99999888888765432   57789999999999999999999999999 888888774  3689999999998999999


Q ss_pred             CEEEecCCCce
Q psy9936         236 NIVEFLKPPEI  246 (315)
Q Consensus       236 ~~i~~~~~~~~  246 (315)
                      ..+..|-|...
T Consensus       295 s~l~fw~p~~~  305 (311)
T KOG1446|consen  295 SNLVFWLPDED  305 (311)
T ss_pred             ceEEEEecccc
Confidence            99999987443

>KOG0300|consensus

Probab=99.96  E-value=3.2e-27  Score=185.09  Aligned_cols=236  Identities=18%  Similarity=0.255  Sum_probs=203.1

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC----
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN----   79 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~----   79 (315)
                      +.+ .++|..++.......+.+++.|.+.+||.++++.++..+. |.+.|+++.|++.+.++++++ |++-+||..    
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~  223 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW  223 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence            344 7889999888777788999999999999999999999988 999999999999999998886 889999861    


Q ss_pred             ---C--------CC--------------------------EEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC
Q psy9936          80 ---Q--------GI--------------------------ELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        80 ---~--------~~--------------------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  121 (315)
                         .        +.                          ++.. ..|...|.+..|...|+.+++++.|.+..+||+++
T Consensus       224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt  303 (481)
T KOG0300|consen  224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET  303 (481)
T ss_pred             cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence               1        00                          0111 22457788899999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       122 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                      |.++..+.+|....+.++-+|..+++++.+.|.+.++||.+.. ..+..|++|...|+++.|.-+. .+++|+.|.+|++
T Consensus       304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKv  382 (481)
T KOG0300|consen  304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKV  382 (481)
T ss_pred             CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEE
Confidence            9999999999999999999999999999999999999999843 4567789999999999998765 4789999999999


Q ss_pred             EEccCCCCCeeEeccCCCceeEEEccCCeEEEE-c-CCEEEecCC
Q psy9936         201 WDVRNLEGPLNTFRTRTPINNLAFSQRGLLATS-R-GNIVEFLKP  243 (315)
Q Consensus       201 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~-~-~~~i~~~~~  243 (315)
                      ||++++..++.++...++++.++.+..+.+++- . +..|++++.
T Consensus       383 WdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  383 WDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             eeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEec
Confidence            999998789999999999999999988855554 3 457888776

>KOG0294|consensus

Probab=99.96  E-value=2.1e-26  Score=180.12  Aligned_cols=233  Identities=12%  Similarity=0.180  Sum_probs=186.4

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecC---cEEEEEeCCeEEEEe
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLE---TMFAVAQKDWVYIYD   78 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~---~~l~~~~~~~i~i~~   78 (315)
                      .|.+.. .++|++++.+  +.++|+|+.|.+|+|||+.....+..+- |.+.|+++.|.++-   .+|.++.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            555666 7889999885  8999999999999999998877666554 88999999999975   566666699999999


Q ss_pred             CCC-CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          79 NQG-IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        79 ~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      ... ..+..++ |...|+.++.+|.+++.++.+.|+.++.||+-.|+.-..+... ...+.+.|+|.|.+++.++.+ .|
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i  191 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRN-KI  191 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEecc-EE
Confidence            954 4445554 5577999999999999999999999999999988765554422 223459999999999888765 69


Q ss_pred             EEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEE--ccCCe--EE
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAF--SQRGL--LA  231 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--s~~g~--~~  231 (315)
                      -+|.+.+.+....+. ....+.++.|- ++.+|++|+.|+.|.+||.... .++..+..|. .|-++.+  .|++.  ..
T Consensus       192 ~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  192 DIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             EEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceEEEE
Confidence            999999877666554 33556777774 5678999999999999999987 8999998887 5877774  34554  45


Q ss_pred             EEcCCEEEecCC
Q psy9936         232 TSRGNIVEFLKP  243 (315)
Q Consensus       232 ~~~~~~i~~~~~  243 (315)
                      ++.||.|++|+.
T Consensus       269 aSSDG~I~vWd~  280 (362)
T KOG0294|consen  269 ASSDGFIKVWDI  280 (362)
T ss_pred             eccCceEEEEEc
Confidence            668999999987

>KOG0308|consensus

Probab=99.95  E-value=2.9e-27  Score=200.72  Aligned_cols=219  Identities=19%  Similarity=0.306  Sum_probs=183.8

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCce------EEEEec-CCCceeEEEEeecCcEEEEE-eCCeEEEEeCCC---CEEEEee
Q psy9936          20 KNGRHLLLGGKRGHVAAFDWVRKT------LACEMN-VMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQG---IELHCLK   88 (315)
Q Consensus        20 ~~~~~l~~~~~dg~i~v~~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~---~~~~~~~   88 (315)
                      |+++||++|+.||.|++|+.....      ....++ |.+.|+++....+++.|+++ +|-+|++|+...   ..+.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            467789999999999999875332      244555 78889999999988666655 589999999843   3344443


Q ss_pred             -cCCceEEEEE-cCCCceEEEEcCCCeEEEEEccCCe--EEE--------Eec-cCCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936          89 -VLNKVTRMEF-LPYHFLLATASEEGYLSWLDTSIGK--IVS--------DFS-AKKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus        89 -~~~~v~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~--~~~--------~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                       |..+|.|+++ -++..++|+|+.|+.|.+||+.++.  .+.        .+. ++..+|++++.++.|..|++|+..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence             6699999999 7788899999999999999999772  222        223 67788999999999999999999999


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC--eEEE
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG--LLAT  232 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g--~~~~  232 (315)
                      +++||.++++.+..+.+|...|..+..++||..++++|.||+|++||+... +++.++..|. .|+++.-+|+-  .|.+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG  273 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSG  273 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEec
Confidence            999999999999999999999999999999999999999999999999988 9999998887 68999988875  3555


Q ss_pred             EcCCEEE
Q psy9936         233 SRGNIVE  239 (315)
Q Consensus       233 ~~~~~i~  239 (315)
                      +.|+.|.
T Consensus       274 ~rd~~i~  280 (735)
T KOG0308|consen  274 GRDGNIY  280 (735)
T ss_pred             CCCCcEE
Confidence            5677776

>KOG0299|consensus

Probab=99.95  E-value=1.7e-26  Score=188.74  Aligned_cols=256  Identities=17%  Similarity=0.202  Sum_probs=207.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE----E-------------e--cCCCceeEEEEeecCcEEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC----E-------------M--NVMEEVYDIKWLHLETMFAVAQ   70 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~----~-------------~--~~~~~v~~~~~~~~~~~l~~~~   70 (315)
                      .-+|.+++++|++++.++++.+|+|.=|+..+++...    .             -  .|...+.+++.++||++|+++.
T Consensus       142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg  221 (479)
T KOG0299|consen  142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGG  221 (479)
T ss_pred             cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecC
Confidence            6789999999999999999999999999988776321    0             0  2455689999999999999997


Q ss_pred             -CCeEEEEeCCC-CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEE
Q psy9936          71 -KDWVYIYDNQG-IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        71 -~~~i~i~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  147 (315)
                       |..|.||+.++ ..+..++ |.+.|.+++|-.....+++++.|+++++|+++....+.++.+|.+.|.++.....++.+
T Consensus       222 ~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v  301 (479)
T KOG0299|consen  222 RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCV  301 (479)
T ss_pred             CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceE
Confidence             78899999954 4445544 55899999999888899999999999999999888888999999999999888888888


Q ss_pred             EEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-CC---------
Q psy9936         148 CLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-RT---------  217 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~---------  217 (315)
                      -+|+.|+++++|++... ....+.+|.+.+-|++|-. ..++++|+.+|.|.+|++... +|+.+... |.         
T Consensus       302 tVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv~~~~~~~~  378 (479)
T KOG0299|consen  302 TVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGVIPELDPVN  378 (479)
T ss_pred             EeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeeccc-CceeEeeccccccCCccccc
Confidence            88889999999999543 3445678899999999965 467999999999999999988 88876642 21         


Q ss_pred             ---CceeEEEccCCeEEEE--cCCEEEecCC-------------------CceeecccccccccC-Ccchhhhhhh
Q psy9936         218 ---PINNLAFSQRGLLATS--RGNIVEFLKP-------------------PEINFEPRRKANKAG-GSVQRAKVKK  268 (315)
Q Consensus       218 ---~v~~~~~s~~g~~~~~--~~~~i~~~~~-------------------~~~~~~~~~~~~~~~-~~~~~~~~~~  268 (315)
                         .|++++..|..-++++  ++|.+++|..                   ++++|+++|+.+.+| +...+.-+|.
T Consensus       379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence               3678888887755544  5899999976                   788999999965554 3333333333

>KOG0288|consensus

Probab=99.95  E-value=6.5e-28  Score=194.58  Aligned_cols=254  Identities=15%  Similarity=0.194  Sum_probs=208.0

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--EEEEec-CCCceeEEEEeecCcEEEEE-eCCeEEEEeCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--LACEMN-VMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQ   80 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~   80 (315)
                      .+.. .+.+..+.|-++...|++|+.|..|++|+....+  ...++. ..++++.+.|.++++.++.+ .|+.+++|+++
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence            3444 6789999999998999999999999999987766  444444 55789999999988766555 58999999995


Q ss_pred             C-CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          81 G-IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        81 ~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      . ....++ .|...|+++.|......+++|+.|.+|+.||+....+..++-. .+.+..+..+  ...+++|..|+.|++
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRf  326 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRF  326 (459)
T ss_pred             chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEE
Confidence            4 444444 4668999999998877799999999999999998777766432 3346666665  457889999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-----CceeEEEccCCeEEEE
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-----PINNLAFSQRGLLATS  233 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~~~~  233 (315)
                      ||+++..+..+...+ +.|+++..+++|..|.+++.|.++.++|+++. .....+....     ..+.+.|||++.|+++
T Consensus       327 wD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA  404 (459)
T KOG0288|consen  327 WDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAA  404 (459)
T ss_pred             EeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeee
Confidence            999999999988865 49999999999999999999999999999998 7666665432     4899999999976544


Q ss_pred             --cCCEEEecCC------------------CceeecccccccccCCcchhh
Q psy9936         234 --RGNIVEFLKP------------------PEINFEPRRKANKAGGSVQRA  264 (315)
Q Consensus       234 --~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  264 (315)
                        +||.|++|++                  ++++|+|.|..+++++.++..
T Consensus       405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v  455 (459)
T KOG0288|consen  405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV  455 (459)
T ss_pred             ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence              5999999977                  688999999999988876543

>KOG1332|consensus

Probab=99.95  E-value=6.8e-27  Score=176.81  Aligned_cols=234  Identities=19%  Similarity=0.243  Sum_probs=184.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc---eEEEEec-CCCceeEEEEee--cCcEEEEEe-CCeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK---TLACEMN-VMEEVYDIKWLH--LETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      ++.|..+...--|+.||+++.|++|+|+...+.   +++.++. |.++|..++|.+  -|.+||+++ ||.|.||.-++.
T Consensus        11 ~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g   90 (299)
T KOG1332|consen   11 EDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG   90 (299)
T ss_pred             hhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence            456666666667999999999999999998654   3556666 999999999987  699999887 999999998665


Q ss_pred             EEEE----eecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCC---eEEEEeccCCCCeEEEEEcCC---C------
Q psy9936          83 ELHC----LKVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIG---KIVSDFSAKKGKLSVMTQNPY---N------  144 (315)
Q Consensus        83 ~~~~----~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~p~---~------  144 (315)
                      ....    ..|...|++++|.|.  |-.|++++.||.|.+++.++.   ........|.-.|++++|.|-   |      
T Consensus        91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~  170 (299)
T KOG1332|consen   91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG  170 (299)
T ss_pred             chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence            3322    235689999999996  678999999999999998754   222335678889999999986   4      


Q ss_pred             -----CEEEEEcCCCeEEEEcCCCCc--ceeEeecccccEEEEEECCCC----CEEEEeeCCCcEEEEEccCCCCCeeE-
Q psy9936         145 -----ACICLGHRNGTVTMWSPTVQK--PLASLLCHKAGIQSVAVNHTG----TYMATSAGDSQLRIWDVRNLEGPLNT-  212 (315)
Q Consensus       145 -----~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~sp~g----~~l~~~~~d~~i~iwd~~~~~~~~~~-  212 (315)
                           +.|++|+.|..|+||+..+++  .-.++.+|...|..++|.|.-    .+||+++.||++.||.......+-.. 
T Consensus       171 ~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t  250 (299)
T KOG1332|consen  171 PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT  250 (299)
T ss_pred             cccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc
Confidence                 469999999999999998763  345588999999999999973    48999999999999987632111111 


Q ss_pred             -e-ccCCCceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         213 -F-RTRTPINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       213 -~-~~~~~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                       + ..+..+..+.||+.|.+  ++++|+.+.+|.+
T Consensus       251 ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  251 LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             ccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence             1 12446899999999943  3446888999985

>KOG0772|consensus

Probab=99.95  E-value=1.1e-26  Score=192.53  Aligned_cols=230  Identities=13%  Similarity=0.126  Sum_probs=179.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-------------cCCCceeEEEEeec--CcEEEEEeCCeE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-------------NVMEEVYDIKWLHL--ETMFAVAQKDWV   74 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-------------~~~~~v~~~~~~~~--~~~l~~~~~~~i   74 (315)
                      ...|.+++|++.|..|++.+.....+|+|-+..+.....             .|...++|-+|+|.  +.+|.++.||++
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            467899999999998888888888999997655543221             26678999999996  457777779999


Q ss_pred             EEEeCCC--CEEEEeecC------CceEEEEEcCCCceEEEEcCCCeEEEEEccCCe--E-EEEeccCCC--CeEEEEEc
Q psy9936          75 YIYDNQG--IELHCLKVL------NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK--I-VSDFSAKKG--KLSVMTQN  141 (315)
Q Consensus        75 ~i~~~~~--~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~-~~~~~~~~~--~v~~~~~~  141 (315)
                      ++|+++.  .....+.+.      -+++.++|+++|++||+|+.||+|.+|+..+..  + ...-.+|..  .|++++||
T Consensus       294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence            9999953  222233322      568999999999999999999999999975432  1 222346766  89999999


Q ss_pred             CCCCEEEEEcCCCeEEEEcCCCC-cceeEeeccc--ccEEEEEECCCCCEEEEee------CCCcEEEEEccCCCCCeeE
Q psy9936         142 PYNACICLGHRNGTVTMWSPTVQ-KPLASLLCHK--AGIQSVAVNHTGTYMATSA------GDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       142 p~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~--~~i~~~~~sp~g~~l~~~~------~d~~i~iwd~~~~~~~~~~  212 (315)
                      +||++|++-+.|+++++||+++. +++....+..  -+-+.++|||+.+++++|.      ..|.+.+||..+. ..++.
T Consensus       374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~k  452 (641)
T KOG0772|consen  374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYK  452 (641)
T ss_pred             cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce-eeEEE
Confidence            99999999999999999999975 5665555432  3456789999999999985      3467999999998 77777


Q ss_pred             eccCC-CceeEEEccC--CeEEEEcCCEEEe
Q psy9936         213 FRTRT-PINNLAFSQR--GLLATSRGNIVEF  240 (315)
Q Consensus       213 ~~~~~-~v~~~~~s~~--g~~~~~~~~~i~~  240 (315)
                      +.... .|..+.|+|.  ..++.++||++++
T Consensus       453 i~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  453 IDISTASVVRCLWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             ecCCCceEEEEeecchhhheeeecCCCceEE
Confidence            76654 6899999995  4677888999874

>KOG0289|consensus

Probab=99.95  E-value=1.1e-25  Score=182.95  Aligned_cols=227  Identities=14%  Similarity=0.208  Sum_probs=189.5

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CC
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GI   82 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~   82 (315)
                      +.+ .-.|+.+.|+|+...+++++.|..|+||............ |.++|+.+..+|.|.||+.++ |++..+.|+. +.
T Consensus       257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~  336 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS  336 (506)
T ss_pred             ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence            344 5678999999999999999999999999987665544444 899999999999999999887 7888888884 55


Q ss_pred             EEEEeecC---CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          83 ELHCLKVL---NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        83 ~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      .+....+.   -.+++.+|+|||.+|.+|..||.+++||+.++..+..|.+|.++|..++|+.+|-+|+++.+|+.|++|
T Consensus       337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw  416 (506)
T KOG0289|consen  337 QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW  416 (506)
T ss_pred             EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence            55444443   458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeEeecc-cccEEEEEECCCCCEEEEeeCCCcEEEEEcc--CCCCCeeEeccCC-CceeEEEccCCeEEEEc
Q psy9936         160 SPTVQKPLASLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWDVR--NLEGPLNTFRTRT-PINNLAFSQRGLLATSR  234 (315)
Q Consensus       160 d~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~  234 (315)
                      |+|..+...++.-. ..++.++.|.+.|.+|+.++.|=.|++++-.  .. .++..+..|. ..+.+.|....++++++
T Consensus       417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W-~~~~~~~~~sg~st~v~Fg~~aq~l~s~  494 (506)
T KOG0289|consen  417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW-TEIKELADHSGLSTGVRFGEHAQYLAST  494 (506)
T ss_pred             EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc-eeeehhhhcccccceeeecccceEEeec
Confidence            99988877777632 2479999999999999999877566666533  34 5666666676 46888888888777665

>KOG0308|consensus

Probab=99.95  E-value=9.2e-27  Score=197.71  Aligned_cols=234  Identities=14%  Similarity=0.189  Sum_probs=204.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc--eEEEEec-CCCceeEEEE-eecCcEEEEEe-CCeEEEEeCCCCE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK--TLACEMN-VMEEVYDIKW-LHLETMFAVAQ-KDWVYIYDNQGIE-   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~-~~~~v~~~~~-~~~~~~l~~~~-~~~i~i~~~~~~~-   83 (315)
                      .+.|..++...+|+.|++++.|-+|++|+...+  -+..++. |.+-|.|+++ .++..++|+|+ |+.|.+||++... 
T Consensus        73 sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~  152 (735)
T KOG0308|consen   73 SDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA  152 (735)
T ss_pred             HhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch
Confidence            566778888889999999999999999998776  3455566 8999999999 67778888887 9999999996331 


Q ss_pred             --EEE--------e--ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc
Q psy9936          84 --LHC--------L--KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        84 --~~~--------~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                        +..        +  .+..+|++++.++.|..+++|+..+.+++||.++.+.+..+.+|..-|.++..++||..+++++
T Consensus       153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s  232 (735)
T KOG0308|consen  153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS  232 (735)
T ss_pred             hhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC
Confidence              111        1  2447899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEc--cCCe
Q psy9936         152 RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS--QRGL  229 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--~~g~  229 (315)
                      .||+|++||+...+++.++..|...|+++..+|+-.++++|+.||.|..=|+++..+....++...+|..+..+  .++.
T Consensus       233 SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~  312 (735)
T KOG0308|consen  233 SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV  312 (735)
T ss_pred             CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc
Confidence            99999999999999999999999999999999999999999999999999999964677777777788888777  3446


Q ss_pred             EEEEcCCEEEecCC
Q psy9936         230 LATSRGNIVEFLKP  243 (315)
Q Consensus       230 ~~~~~~~~i~~~~~  243 (315)
                      .+++.|+.|+.|..
T Consensus       313 WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  313 WVTTTDSSIKRWKL  326 (735)
T ss_pred             eeeeccccceecCC
Confidence            89999999999976

>KOG0646|consensus

Probab=99.95  E-value=4.7e-26  Score=186.56  Aligned_cols=216  Identities=16%  Similarity=0.250  Sum_probs=185.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-------
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-------   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-------   80 (315)
                      +++|.|++-+|+|.+|+.|+-.|.|++|.+.+|.++..+. |..+|+++.|+.||.+|++++ ||.|.+|.+.       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            7889999999999999988899999999999999988887 899999999999999999987 8999999862       


Q ss_pred             C---CEEEEee-cCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC
Q psy9936          81 G---IELHCLK-VLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        81 ~---~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      .   .....+. |.-+|+.+...+.  ...+++++.|.++++||+..|..+.++. .+..+.+++.+|-++.++.|+.+|
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence            1   2233333 4478998888765  4689999999999999999998888775 456799999999999999999999


Q ss_pred             eEEEEcCCCC----------------cceeEeecccc--cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec-c
Q psy9936         155 TVTMWSPTVQ----------------KPLASLLCHKA--GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR-T  215 (315)
Q Consensus       155 ~i~i~d~~~~----------------~~~~~~~~~~~--~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~  215 (315)
                      .|.+.++...                ..+..+.+|.+  .|+|++.+-||.+|++|+.||.++|||+.+. ++++++. .
T Consensus       240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~  318 (476)
T KOG0646|consen  240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTS  318 (476)
T ss_pred             eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhh
Confidence            9999886532                23556678888  9999999999999999999999999999998 8888887 5


Q ss_pred             CCCceeEEEccC
Q psy9936         216 RTPINNLAFSQR  227 (315)
Q Consensus       216 ~~~v~~~~~s~~  227 (315)
                      .++|+.+.+.|-
T Consensus       319 kgpVtnL~i~~~  330 (476)
T KOG0646|consen  319 KGPVTNLQINPL  330 (476)
T ss_pred             ccccceeEeecc
Confidence            668888888553

>KOG1539|consensus

Probab=99.95  E-value=6.3e-25  Score=191.37  Aligned_cols=240  Identities=14%  Similarity=0.194  Sum_probs=204.0

Q ss_pred             cEEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCC-CceeEEEEeecCcEEE-EEe-CCeEEEEe
Q psy9936           3 KQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFA-VAQ-KDWVYIYD   78 (315)
Q Consensus         3 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~-~~~i~i~~   78 (315)
                      .+|+++. ...|+++.-+|--..+|.|..+|+|.++++..++.+..+++. +.|++++|.-||..+. ++. .|.+.+||
T Consensus       194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD  273 (910)
T KOG1539|consen  194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD  273 (910)
T ss_pred             EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence            4677777 899999999999999999999999999999999999999986 9999999999987554 444 58899999


Q ss_pred             CCCC----------------------------------------------------------------------------
Q psy9936          79 NQGI----------------------------------------------------------------------------   82 (315)
Q Consensus        79 ~~~~----------------------------------------------------------------------------   82 (315)
                      ++.+                                                                            
T Consensus       274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa  353 (910)
T KOG1539|consen  274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA  353 (910)
T ss_pred             cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence            7543                                                                            


Q ss_pred             ---------------------------------------------------------------------EE---------
Q psy9936          83 ---------------------------------------------------------------------EL---------   84 (315)
Q Consensus        83 ---------------------------------------------------------------------~~---------   84 (315)
                                                                                           ..         
T Consensus       354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~  433 (910)
T KOG1539|consen  354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT  433 (910)
T ss_pred             ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence                                                                                 00         


Q ss_pred             ---EEeecC------CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEcC
Q psy9936          85 ---HCLKVL------NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF---SAKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        85 ---~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                         ..+.+.      ..+.+++.++.|++.+.|...|.|-+|++++|.....+   ..|.++|++++...-++.+++++.
T Consensus       434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~  513 (910)
T KOG1539|consen  434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA  513 (910)
T ss_pred             cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence               001111      45778889999999999999999999999999888888   579999999999998999999999


Q ss_pred             CCeEEEEcCCCCc-----------------------------------------ceeEeecccccEEEEEECCCCCEEEE
Q psy9936         153 NGTVTMWSPTVQK-----------------------------------------PLASLLCHKAGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       153 d~~i~i~d~~~~~-----------------------------------------~~~~~~~~~~~i~~~~~sp~g~~l~~  191 (315)
                      +|.+.+||.....                                         .++.+.+|.+.|+.++|||||+||++
T Consensus       514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis  593 (910)
T KOG1539|consen  514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS  593 (910)
T ss_pred             cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE
Confidence            9999999976432                                         24556689999999999999999999


Q ss_pred             eeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEc--C-CEEEecCC
Q psy9936         192 SAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSR--G-NIVEFLKP  243 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~--~-~~i~~~~~  243 (315)
                      ++.|++|++||+.++ .++-.+..+.++.++.|||+|.++|+.  | .-|.+|.-
T Consensus       594 asmD~tIr~wDlpt~-~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  594 ASMDSTIRTWDLPTG-TLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eecCCcEEEEeccCc-ceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            999999999999999 999999999999999999999776653  4 66887754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=3.1e-24  Score=180.03  Aligned_cols=234  Identities=13%  Similarity=0.126  Sum_probs=176.4

Q ss_pred             eCCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCC-E
Q psy9936           8 DLQFGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGI-E   83 (315)
Q Consensus         8 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~-~   83 (315)
                      .....+.+++|+|+++.+ ++++.++.|++||..+++....+.....+..+.|+|+++.++++.  ++.+++||+... .
T Consensus        28 ~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        28 PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence            334557789999999976 566788999999999988877666444567889999998776543  789999999654 3


Q ss_pred             EEEeecCCceEEEEEcCCCceEEEEcCCC-eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEcC
Q psy9936          84 LHCLKVLNKVTRMEFLPYHFLLATASEEG-YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWSP  161 (315)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~  161 (315)
                      +..+.....+.+++|+|++.+++++..++ .+.+||..+++....+.. ...+..++|+|+|++|+++ ..++.|.+||+
T Consensus       108 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~  186 (300)
T TIGR03866       108 LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDV  186 (300)
T ss_pred             EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence            44444445678899999999999888765 467889988876655432 2345779999999988554 46899999999


Q ss_pred             CCCcceeEeeccc-------ccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEE-E
Q psy9936         162 TVQKPLASLLCHK-------AGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLA-T  232 (315)
Q Consensus       162 ~~~~~~~~~~~~~-------~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~-~  232 (315)
                      ++++.+..+..+.       .....++|+|++++++++ +.++.+.+||++++ +.+..+..+..+.+++|+|+|.++ +
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDYLLVGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEEeCCCcceEEECCCCCEEEE
Confidence            9988776664221       123568899999986543 55678999999987 666655555578999999999533 3


Q ss_pred             E--cCCEEEecCC
Q psy9936         233 S--RGNIVEFLKP  243 (315)
Q Consensus       233 ~--~~~~i~~~~~  243 (315)
                      +  .++.|.+|+.
T Consensus       266 ~~~~~~~i~v~d~  278 (300)
T TIGR03866       266 TNGVSNDVSVIDV  278 (300)
T ss_pred             EcCCCCeEEEEEC
Confidence            3  3789999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299|consensus

Probab=99.95  E-value=7.6e-26  Score=185.01  Aligned_cols=224  Identities=17%  Similarity=0.239  Sum_probs=185.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeec-CcEEEEEeCCeEEEEeCCCCEE--E
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHL-ETMFAVAQKDWVYIYDNQGIEL--H   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~--~   85 (315)
                      ...+.+++.||||+|||+|+.|..|.||+.++.+.+..+. |.+.|.+++|-.. .++++++.|..|++|+++....  .
T Consensus       202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence            4568999999999999999999999999999999999877 8999999999875 4566666799999999964332  3


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      .+.|+..|.++....-...+.+|+.|+++++|++.. .....+.+|.+.+.|++|-.+ ..|++|+.+|.|.+|++...+
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC
Confidence            467889999998887788888888999999999953 333456788889999999654 578999999999999999888


Q ss_pred             ceeEee-cc-----------cccEEEEEECCCCCEEEEeeCCCcEEEEEccCC---CCCeeEeccCCCceeEEEccCCe-
Q psy9936         166 PLASLL-CH-----------KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL---EGPLNTFRTRTPINNLAFSQRGL-  229 (315)
Q Consensus       166 ~~~~~~-~~-----------~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~-  229 (315)
                      ++.+.. +|           +.+|++++..|...++|+|+.+|.|++|-+..+   -.++..+....-|++++|+++|. 
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKR  439 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCE
Confidence            887664 22           128999999999999999999999999999876   24566666666699999999996 


Q ss_pred             EEEEcC
Q psy9936         230 LATSRG  235 (315)
Q Consensus       230 ~~~~~~  235 (315)
                      ++++.+
T Consensus       440 ivagiG  445 (479)
T KOG0299|consen  440 IVAGIG  445 (479)
T ss_pred             EEEecc
Confidence            555543

>KOG1274|consensus

Probab=99.95  E-value=2.4e-25  Score=195.81  Aligned_cols=242  Identities=12%  Similarity=0.150  Sum_probs=196.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc-eEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC-EEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK-TLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI-ELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~-~~~~   86 (315)
                      ..+.+.++|.|+|.+|++++.||.|++|+.... +....+. +...|.+++-..+ .+++++.+++|.+|..... .-..
T Consensus        13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~i   91 (933)
T KOG1274|consen   13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEEDTI   91 (933)
T ss_pred             cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEeeccceEEEeeCCCCCccce
Confidence            677899999999999999999999999987655 3333444 5666776664332 4444445899999998433 3223


Q ss_pred             ee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          87 LK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        87 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      +. ..-++.+++|+.+|+++|.|+.|-.|++.++.+......+++|.++|.++.|+|.+++||+.+.||.|++||+.++.
T Consensus        92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen   92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI  171 (933)
T ss_pred             eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence            33 34789999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ceeEeec--------ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCeEEEEc
Q psy9936         166 PLASLLC--------HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLLATSR  234 (315)
Q Consensus       166 ~~~~~~~--------~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~~~~~  234 (315)
                      ...++.+        ....+..++|+|+|..|+..+.|+.|++|+..++ .+...+...   +.+..+.|+|+|.|+|++
T Consensus       172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccceEEEEEcCCCcEEeee
Confidence            7666543        1346778999999888989999999999999998 777766543   248999999999877664


Q ss_pred             --CCEEEecCC------------Cceeeccccc
Q psy9936         235 --GNIVEFLKP------------PEINFEPRRK  253 (315)
Q Consensus       235 --~~~i~~~~~------------~~~~~~~~~~  253 (315)
                        +|.|-+|+.            .+++|.|+..
T Consensus       251 ~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  251 TLDGQILVWNVDTHERHEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             ccCCcEEEEecccchhccccceeEEEecCCCCC
Confidence              899999987            4677777654

>KOG0274|consensus

Probab=99.95  E-value=1.5e-25  Score=197.11  Aligned_cols=227  Identities=17%  Similarity=0.294  Sum_probs=194.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE-ec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC-CCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE-MN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-QGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-~~~~~~   85 (315)
                      ...+.+..|.  ..++++++.+++|++|+..++..+.. +. |.+.|.++++..-+.++++|+ |.++++||. .+....
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~  285 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH  285 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence            4566777777  45889999999999999999988777 66 999999999987677777776 999999998 567777


Q ss_pred             Eee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936          86 CLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        86 ~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      .+. |...+.++...  ...+++|+.|.+|++|++.++..+..+.+|.++|.++..+  +.++++|+.|++|.+||+.++
T Consensus       286 ~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~  361 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG  361 (537)
T ss_pred             EecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc
Confidence            766 56778887665  4468888999999999999999999999999999999987  789999999999999999999


Q ss_pred             cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +++.++.+|..+|.++.+.+. .++++|+.|++|++||+++..+++..+..|.. +..+.+...-++..+.|++|++|+.
T Consensus       362 ~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~  440 (537)
T KOG0274|consen  362 KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDA  440 (537)
T ss_pred             eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeec
Confidence            999999999999999988765 89999999999999999986468888888875 5566655554566677999999977

>KOG0302|consensus

Probab=99.95  E-value=1.4e-25  Score=179.40  Aligned_cols=232  Identities=20%  Similarity=0.300  Sum_probs=171.9

Q ss_pred             CCcEEEEEEcCCC--CEEEEEcCCCeEEEEEccC----------------ceEEEEec-CCCceeEEEEee--cCcEEEE
Q psy9936          10 QFGIYRMNYTKNG--RHLLLGGKRGHVAAFDWVR----------------KTLACEMN-VMEEVYDIKWLH--LETMFAV   68 (315)
Q Consensus        10 ~~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~----------------~~~~~~~~-~~~~v~~~~~~~--~~~~l~~   68 (315)
                      .+.+..+.-++-+  .+.++-+..|.|+||++..                .+++.++. |...-+.++|||  .|.++..
T Consensus       151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG  230 (440)
T KOG0302|consen  151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG  230 (440)
T ss_pred             ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence            4566666666654  4566667789999999752                12344555 667788999999  3554444


Q ss_pred             EeCCeEEEEeCCCCEEE-----EeecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCC---eEEEEeccCCCCeEEEE
Q psy9936          69 AQKDWVYIYDNQGIELH-----CLKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIG---KIVSDFSAKKGKLSVMT  139 (315)
Q Consensus        69 ~~~~~i~i~~~~~~~~~-----~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~  139 (315)
                      -..+.|++|........     ...|...|..++|||. ...|++|+.||+|+|||++.+   ..+. .+.|.+.|+.+.
T Consensus       231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVIS  309 (440)
T KOG0302|consen  231 DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVIS  309 (440)
T ss_pred             ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEE
Confidence            44688999988443222     2347789999999997 468999999999999999987   2333 378999999999


Q ss_pred             EcCCCCEEEEEcCCCeEEEEcCCC---CcceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCC--------
Q psy9936         140 QNPYNACICLGHRNGTVTMWSPTV---QKPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLE--------  207 (315)
Q Consensus       140 ~~p~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~--------  207 (315)
                      |+.+-.+||+|+.||+++|||+|+   ++++.+|.-|..+|++|.|+|. ...|++++.|.+|.+||+..-.        
T Consensus       310 Wnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~  389 (440)
T KOG0302|consen  310 WNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQE  389 (440)
T ss_pred             ccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccc
Confidence            999888999999999999999985   5788999999999999999997 4578889999999999986420        


Q ss_pred             -------CCeeEeccC---CCceeEEEccC--CeEEEEcCCEEEecC
Q psy9936         208 -------GPLNTFRTR---TPINNLAFSQR--GLLATSRGNIVEFLK  242 (315)
Q Consensus       208 -------~~~~~~~~~---~~v~~~~~s~~--g~~~~~~~~~i~~~~  242 (315)
                             -|-+.+..|   ..+-.+.|+++  |.++.++-.-+.+|.
T Consensus       390 a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  390 AAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             cccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence                   011122223   24778899886  455555433334443

>KOG1273|consensus

Probab=99.94  E-value=2.9e-25  Score=173.83  Aligned_cols=250  Identities=14%  Similarity=0.195  Sum_probs=189.5

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC-CCCEEEEeec
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-QGIELHCLKV   89 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-~~~~~~~~~~   89 (315)
                      ..|+.|++.|.+||+|..+|.|.|||+.+......+. |..+|.+++||++|+.|++++ |..|.+||+ .+..+..+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            6899999999999999999999999999998877777 889999999999999999887 899999998 6778888888


Q ss_pred             CCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCC----CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936          90 LNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKG----KLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        90 ~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      ..+|+...|+|.. +.+++.-.+..-.+.++..++....-....+    ...+..|.+.|+++++|...|.+.+||..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence            9999999999964 3333333344455666554322211111111    1233458899999999999999999999999


Q ss_pred             cceeEeeccc-ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC------CCe--eEec---cCCCceeEEEccCCeEEE
Q psy9936         165 KPLASLLCHK-AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE------GPL--NTFR---TRTPINNLAFSQRGLLAT  232 (315)
Q Consensus       165 ~~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~------~~~--~~~~---~~~~v~~~~~s~~g~~~~  232 (315)
                      +++..++-.. ..|..+.++..|+.|++.+.|..||.|+++.-.      ++.  +.+.   ...+-.+++||.||.|++
T Consensus       186 e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~  265 (405)
T KOG1273|consen  186 ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVC  265 (405)
T ss_pred             eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEE
Confidence            9998887555 789999999999999999999999999987321      111  1111   112457899999997666


Q ss_pred             EcC---CEEEecCC-----------------CceeecccccccccCCcch
Q psy9936         233 SRG---NIVEFLKP-----------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       233 ~~~---~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      ++.   ..+.+|.-                 ..+.|.|-...+++-.++.
T Consensus       266 a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~  315 (405)
T KOG1273|consen  266 AGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGV  315 (405)
T ss_pred             eccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCc
Confidence            553   34556644                 4677888877777664443

>KOG0267|consensus

Probab=99.94  E-value=3.4e-27  Score=202.49  Aligned_cols=225  Identities=18%  Similarity=0.311  Sum_probs=196.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~   86 (315)
                      ...+.++..-..++.+++|+.+..+-+|.......+..+. |..+|.++.|+++..+|+.|. +|+|++||++ ...++.
T Consensus        28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt  107 (825)
T KOG0267|consen   28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT  107 (825)
T ss_pred             hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh
Confidence            3445666665567899999999999999987776666655 999999999999999988886 8999999994 454555


Q ss_pred             e-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          87 L-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        87 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      + .|...+.++.|+|-+.+++.|+.|+.+.+||.+..-+.+.+.+|...+..+.|+|+|+++++|++|.+++|||+..|+
T Consensus       108 Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk  187 (825)
T KOG0267|consen  108 LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK  187 (825)
T ss_pred             hhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence            4 466889999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEEcC
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATSRG  235 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~~  235 (315)
                      .+..|..|.+.+..+.|+|..-++++|+.|+++++||+++. ..+....... +|.+..|+|+|..+.+++
T Consensus       188 ~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  188 LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             cccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCCceeeecCc
Confidence            99999999999999999999999999999999999999987 6666555443 799999999997666654

>KOG0283|consensus

Probab=99.94  E-value=1.7e-25  Score=195.37  Aligned_cols=198  Identities=15%  Similarity=0.170  Sum_probs=168.2

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEee-cCcEEEEEe-CCeEEEEeCCCCE
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      +.+ .+.|..+.||.++ +|++++.|.+|++|++....++..|.|.+-|+|++|+| |.+++++|+ |+.++||++....
T Consensus       365 f~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             hhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence            344 6789999999865 99999999999999999999999999999999999999 788999988 9999999997766


Q ss_pred             EEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc--C------CCCeEEEEEcCCC-CEEEEEcCC
Q psy9936          84 LHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA--K------KGKLSVMTQNPYN-ACICLGHRN  153 (315)
Q Consensus        84 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~------~~~v~~~~~~p~~-~~l~~~~~d  153 (315)
                      +.... ...-|++++|.|+|+..++|+.+|.+++|+....+....+..  |      ...|+++.|.|.. ..+++.+.|
T Consensus       444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD  523 (712)
T KOG0283|consen  444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND  523 (712)
T ss_pred             eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC
Confidence            65544 347899999999999999999999999999987666554421  1      2279999999844 357777889


Q ss_pred             CeEEEEcCCCCcceeEeecccc--cEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKA--GIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      ..|+|||.++...+..|+++..  .-....|+.||++|++++.|..|++|+...
T Consensus       524 SrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  524 SRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            9999999998889999887543  334678999999999999999999999854

>KOG0269|consensus

Probab=99.94  E-value=5.6e-26  Score=196.41  Aligned_cols=226  Identities=17%  Similarity=0.271  Sum_probs=177.1

Q ss_pred             EEEEEEcC-CCCEEEEEcCCCeEEEEEccC---ceEEEEec-CCCceeEEEEeecC-cEEEEEe-CCeEEEEeCCCC-EE
Q psy9936          13 IYRMNYTK-NGRHLLLGGKRGHVAAFDWVR---KTLACEMN-VMEEVYDIKWLHLE-TMFAVAQ-KDWVYIYDNQGI-EL   84 (315)
Q Consensus        13 v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~---~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~-~~~i~i~~~~~~-~~   84 (315)
                      +..+.|+. +.++||+++..|.|.+||+..   .+.+..+. |...++++.|++.. .+|++|+ ||.|++||+... ..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            34455654 456999999999999999976   44455565 88899999999964 5566665 999999999432 22


Q ss_pred             EE-eecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          85 HC-LKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        85 ~~-~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .+ ......|..+.|+|. +..|+++.+.|.+.+||++.. ++...+.+|.++|.++.|+|++.+||+||+|+.|+|||.
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            22 334578999999996 789999999999999999865 466678899999999999999999999999999999999


Q ss_pred             CCCcc--eeEeecccccEEEEEECCCCC-EEEEee--CCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCC---eEEE
Q psy9936         162 TVQKP--LASLLCHKAGIQSVAVNHTGT-YMATSA--GDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRG---LLAT  232 (315)
Q Consensus       162 ~~~~~--~~~~~~~~~~i~~~~~sp~g~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g---~~~~  232 (315)
                      .+++.  +.++. -..++.++.|-|+.. +||+++  .|-.|+|||++-..-|...+..|.+ ++.++|....   ++..
T Consensus       250 t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~  328 (839)
T KOG0269|consen  250 TDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC  328 (839)
T ss_pred             cCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence            87643  34443 357999999999865 577776  4668999999977578888888875 6888887633   3445


Q ss_pred             EcCCEEE
Q psy9936         233 SRGNIVE  239 (315)
Q Consensus       233 ~~~~~i~  239 (315)
                      +-|+++.
T Consensus       329 sKD~tv~  335 (839)
T KOG0269|consen  329 SKDGTVL  335 (839)
T ss_pred             cCccHHH
Confidence            5577665

>KOG0269|consensus

Probab=99.94  E-value=1.7e-25  Score=193.49  Aligned_cols=257  Identities=14%  Similarity=0.255  Sum_probs=197.9

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEE----EEec----CCCceeEEEEee-cCcEEEEEe-CCeEEE
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA----CEMN----VMEEVYDIKWLH-LETMFAVAQ-KDWVYI   76 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~----~~~~----~~~~v~~~~~~~-~~~~l~~~~-~~~i~i   76 (315)
                      +.++....++...++-..|+.++.. .+.||.+......    ..+.    ..-.+.++.|.. +.++||+++ .|.|.+
T Consensus        36 ~~~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~v  114 (839)
T KOG0269|consen   36 CKLKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISV  114 (839)
T ss_pred             eecccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEE
Confidence            3346677788888988888887654 6778876543211    1111    112466788885 367888776 899999


Q ss_pred             EeCCC----CEEEEe-ecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEE
Q psy9936          77 YDNQG----IELHCL-KVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICL  149 (315)
Q Consensus        77 ~~~~~----~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~  149 (315)
                      ||+..    ..+..+ .|...+.++.|++. .++|++|+.||+|++||++..+...++.+....|..++|+| .+.+|++
T Consensus       115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s  194 (839)
T KOG0269|consen  115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS  194 (839)
T ss_pred             EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence            99954    222223 36688999999996 57899999999999999999988888888888999999999 5679999


Q ss_pred             EcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC-CCCeeEeccCCCceeEEEccC
Q psy9936         150 GHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL-EGPLNTFRTRTPINNLAFSQR  227 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~  227 (315)
                      +.+.|.+++||+|.. ++...+.+|.++|.|+.|+|++.+||||+.|+.|+|||+.+. ..++.++..-.++..+.|-|.
T Consensus       195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            999999999999964 567788899999999999999999999999999999999854 245566666678999999998


Q ss_pred             Ce-EEEE----cCCEEEecCC-----------------Cceeecc-cccccccCCcchhh
Q psy9936         228 GL-LATS----RGNIVEFLKP-----------------PEINFEP-RRKANKAGGSVQRA  264 (315)
Q Consensus       228 g~-~~~~----~~~~i~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~  264 (315)
                      .. .+|+    .|..|++|++                 +.++|.. |...+.+++.+...
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence            73 3333    3778999987                 5666643 44566677766643

>KOG4283|consensus

Probab=99.94  E-value=2e-24  Score=167.77  Aligned_cols=260  Identities=18%  Similarity=0.308  Sum_probs=192.8

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCce----------EEEEe------cCCCceeEEEEee-cCcEEEEEe-
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKT----------LACEM------NVMEEVYDIKWLH-LETMFAVAQ-   70 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~----------~~~~~------~~~~~v~~~~~~~-~~~~l~~~~-   70 (315)
                      .++|+++...+ .|+|+++|+.||.|.|||++...          ....+      .|.-.|.++.|-| |.-++.+++ 
T Consensus        43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF  122 (397)
T KOG4283|consen   43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF  122 (397)
T ss_pred             CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence            67899999887 68899999999999999997543          01111      1455799999999 444444444 


Q ss_pred             CCeEEEEeCCC-CEEEEeecCCceEEEEEcCC---CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-
Q psy9936          71 KDWVYIYDNQG-IELHCLKVLNKVTRMEFLPY---HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-  145 (315)
Q Consensus        71 ~~~i~i~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-  145 (315)
                      |.++++||.++ ++...++-.+.|++-+++|-   ..++|+|..+-.|++-|+.+|...+.+.+|.+.|.++.|+|... 
T Consensus       123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~  202 (397)
T KOG4283|consen  123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW  202 (397)
T ss_pred             cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence            99999999954 55566777889999999995   45778888888999999999999999999999999999999888 


Q ss_pred             EEEEEcCCCeEEEEcCCCC-ccee--------------EeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCe
Q psy9936         146 CICLGHRNGTVTMWSPTVQ-KPLA--------------SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL  210 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~-~~~~--------------~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~  210 (315)
                      .|++|+.||.|++||++.. -+..              .-..|.+.+++++|+.+|.++++++.|..+++|+..++...+
T Consensus       203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence            5788999999999998743 1221              123577899999999999999999999999999998873333


Q ss_pred             eEecc--CC-----C--ce-----eEEEccCC--e--EEEEcCCEEEecCC-----CceeecccccccccCCcchhhhhh
Q psy9936         211 NTFRT--RT-----P--IN-----NLAFSQRG--L--LATSRGNIVEFLKP-----PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       211 ~~~~~--~~-----~--v~-----~~~~s~~g--~--~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      ..+..  +.     .  +.     -+.+-|.+  +  +.+..+..|+.|+.     .+..+.|+-+..-+|+.+..+-.+
T Consensus       283 ~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  283 REFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             cccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccc
Confidence            32211  10     1  11     12222332  2  33344566777766     566677887777788777766555


Q ss_pred             hh
Q psy9936         268 KI  269 (315)
Q Consensus       268 ~~  269 (315)
                      ..
T Consensus       363 ~p  364 (397)
T KOG4283|consen  363 SP  364 (397)
T ss_pred             cc
Confidence            44

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=4.1e-23  Score=173.26  Aligned_cols=240  Identities=11%  Similarity=0.094  Sum_probs=178.9

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEE-EEe-CCeEEEEeCCCC-EEEEeecCCceEEEEEc
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFA-VAQ-KDWVYIYDNQGI-ELHCLKVLNKVTRMEFL   99 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-~~~i~i~~~~~~-~~~~~~~~~~v~~~~~~   99 (315)
                      ..+++++.|+.|++||+.+++....+.....+.+++|+|++..++ ++. ++.|++||..+. ....+.....+..++|+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~   81 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALH   81 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEEC
Confidence            578888999999999999998888887556678899999998764 443 789999999654 33334444456788999


Q ss_pred             CCCceEEEE-cCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC-eEEEEcCCCCcceeEeecccccE
Q psy9936         100 PYHFLLATA-SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG-TVTMWSPTVQKPLASLLCHKAGI  177 (315)
Q Consensus       100 ~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i  177 (315)
                      |+++.++++ +.++.+.+||+.+++.+..+..+ ..+..++|+|+|+++++++.++ .+.+||.++++.+..+. ....+
T Consensus        82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~  159 (300)
T TIGR03866        82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRP  159 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCc
Confidence            999877655 56899999999988877776532 3467899999999999888765 57788998877665544 33455


Q ss_pred             EEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEeccCC--------CceeEEEccCCeE--EE-EcCCEEEecCC--
Q psy9936         178 QSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFRTRT--------PINNLAFSQRGLL--AT-SRGNIVEFLKP--  243 (315)
Q Consensus       178 ~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~--~~-~~~~~i~~~~~--  243 (315)
                      .+++|+|+|++|+++ ..++.|++||+.++ +.+..+..+.        ....++|+|+|.+  ++ +.++.+.+|+.  
T Consensus       160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       160 RFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            789999999988654 46899999999987 6665554221        2357899999953  33 23567877765  


Q ss_pred             -------------CceeecccccccccCC-cchhhh
Q psy9936         244 -------------PEINFEPRRKANKAGG-SVQRAK  265 (315)
Q Consensus       244 -------------~~~~~~~~~~~~~~~~-~~~~~~  265 (315)
                                   ..++|+|+++.+++++ .++.+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       239 YEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVS  274 (300)
T ss_pred             CcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence                         5688999999887654 344333

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294|consensus

Probab=99.93  E-value=5.7e-24  Score=166.55  Aligned_cols=244  Identities=15%  Similarity=0.168  Sum_probs=189.5

Q ss_pred             EEEEEcCCCeEEEEEccCce------------EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEE-EEe
Q psy9936          24 HLLLGGKRGHVAAFDWVRKT------------LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IEL-HCL   87 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~-~~~   87 (315)
                      .|++|++...|.=+++.-..            +...+. |.+++++++.  ++.++|+|+ |.+|+|||+.. .++ ..+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence            35667777666666553211            123334 7788999887  588999886 88999999953 233 335


Q ss_pred             ecCCceEEEEEcCCCc--eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          88 KVLNKVTRMEFLPYHF--LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        88 ~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      .|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-..+..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-.|+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            6779999999999754  89999999999999999999999999999999999999999999999999999999998887


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEc-CCEEEecCC-
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSR-GNIVEFLKP-  243 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~-~~~i~~~~~-  243 (315)
                      .-..++ -....+.+.|+|.|.+++.++.++ |-+|.+.+. .....+.....+.++.|-..+.+++++ +..|..|+. 
T Consensus       161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A-~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNA-SVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             cceeec-cCCcceeeEEcCCCCEEEEEeccE-EEEEecccH-hHhhhhhccccceeeeecCCceEEEecCCceEEEeccC
Confidence            655544 233345599999999999888774 999999987 777776666668888888877666655 667887766 


Q ss_pred             ---------------Ccee--ecccccccccCCcchhhhhhhhhHH
Q psy9936         244 ---------------PEIN--FEPRRKANKAGGSVQRAKVKKIVRE  272 (315)
Q Consensus       244 ---------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  272 (315)
                                     ..+.  -.|++.+|++.++++.++.|....+
T Consensus       238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence                           2222  2477899999999998777655544

>KOG0301|consensus

Probab=99.93  E-value=4e-24  Score=183.01  Aligned_cols=225  Identities=13%  Similarity=0.162  Sum_probs=192.4

Q ss_pred             CcEEE-EEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEe
Q psy9936          11 FGIYR-MNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCL   87 (315)
Q Consensus        11 ~~v~~-~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~   87 (315)
                      +-|.+ ++|-+ ++-.|++|+.|++|.+|...+..+...+. |...|.+++...++.++..+-|.++++|.+..-.....
T Consensus        58 g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~  137 (745)
T KOG0301|consen   58 GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQ  137 (745)
T ss_pred             ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccC
Confidence            33433 66665 44468999999999999999999998887 99999999988888844444599999998854444467


Q ss_pred             ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce
Q psy9936          88 KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus        88 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~  167 (315)
                      .|...|++++..|.+ .+++|+.|.+|++|.-  ++.+++|.+|...|..+++-|++ .|++++.||.|++|++ ++..+
T Consensus       138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l  212 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVL  212 (745)
T ss_pred             CcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCcee
Confidence            788999999999988 7889999999999984  78899999999999999998875 4779999999999999 68889


Q ss_pred             eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         168 ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       168 ~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      .++.+|.+-+.+++..+++..+++++.|++++||+..   .+.+.+..+. .++++.+-++|. ++++.||.|++|..
T Consensus       213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTV  287 (745)
T ss_pred             eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEe
Confidence            9999999999999988888999999999999999976   6778887776 699999998885 66678999999874

>KOG0640|consensus

Probab=99.93  E-value=1.5e-24  Score=169.57  Aligned_cols=232  Identities=16%  Similarity=0.218  Sum_probs=186.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE---EEEecCCCceeEEEEeecCcEEEEEeC-CeEEEEeCCCCE-E
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL---ACEMNVMEEVYDIKWLHLETMFAVAQK-DWVYIYDNQGIE-L   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~-~   84 (315)
                      -+.|+++.|+|....|++|+.|++|+++|......   ...+....+|.++.|+|.|.+|++|.+ ..+++||+++.+ .
T Consensus       172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf  251 (430)
T KOG0640|consen  172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF  251 (430)
T ss_pred             cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence            57899999999999999999999999999875443   334456678999999999999999986 689999996533 2


Q ss_pred             EE----eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec-cCCC-CeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          85 HC----LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKG-KLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        85 ~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~-~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      ..    -.|.+.|+++.+++.+++.++++.||.|++||--+++++.++. .|.+ .|++..|..+|+++++.+.|..+++
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL  331 (430)
T ss_pred             eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence            22    2355889999999999999999999999999988888888875 4543 5899999999999999999999999


Q ss_pred             EcCCCCcceeEeeccc--c---cEEEEEECCCCCEEEEeeC-CCcEEEEEccCCCCCeeEec-cC-CCceeEEEccCCe-
Q psy9936         159 WSPTVQKPLASLLCHK--A---GIQSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTFR-TR-TPINNLAFSQRGL-  229 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~--~---~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~-~~-~~v~~~~~s~~g~-  229 (315)
                      |.+.+++++..+.|..  +   --+...|+....|++.-.. .+.+.-||.++. ..+..+. +| ..++.+.-||.+- 
T Consensus       332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta-dr~~l~slgHn~a~R~i~HSP~~p~  410 (430)
T KOG0640|consen  332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA-DRVALLSLGHNGAVRWIVHSPVEPA  410 (430)
T ss_pred             eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch-hhhhhcccCCCCCceEEEeCCCCCc
Confidence            9999999999987532  1   1234567777777776653 457999999998 4443333 34 3689999999983 


Q ss_pred             -EEEEcCCEEEecC
Q psy9936         230 -LATSRGNIVEFLK  242 (315)
Q Consensus       230 -~~~~~~~~i~~~~  242 (315)
                       +.++.|-.++.|.
T Consensus       411 FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  411 FMTCSDDFRARFWY  424 (430)
T ss_pred             eeeecccceeeeee
Confidence             4445577788885

>KOG1408|consensus

Probab=99.93  E-value=2.1e-24  Score=185.55  Aligned_cols=233  Identities=17%  Similarity=0.256  Sum_probs=194.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeec---CcEEEEEe-CCeEEEEeCCC--C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHL---ETMFAVAQ-KDWVYIYDNQG--I   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~---~~~l~~~~-~~~i~i~~~~~--~   82 (315)
                      ..++.+++.||+|++||+|..-|+++||++.+.+....++ |...|.|+.|+..   .++||+++ |.-|++||...  .
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            6789999999999999999999999999999988888887 8899999999863   57888887 78999999842  2


Q ss_pred             EEEEe-ecCCceEEEEEcCCC--ceEEEEcCCCeEEEEEccCCeEEEEec-----cCCCCeEEEEEcCCCCEEEEEcCCC
Q psy9936          83 ELHCL-KVLNKVTRMEFLPYH--FLLATASEEGYLSWLDTSIGKIVSDFS-----AKKGKLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        83 ~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      .+.++ .|...|+++.|..+|  ..+++++.|..|.+--.+.......+.     .....++.|+..|..+++++++.|.
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr  618 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR  618 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence            33334 456899999999887  678888888776543322111111121     1234689999999999999999999


Q ss_pred             eEEEEcCCCCcceeEeec---ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCC--
Q psy9936         155 TVTMWSPTVQKPLASLLC---HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRG--  228 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g--  228 (315)
                      .|+|||+.+++..+.|++   |.+..-.+...|.|.|||+.+.|.++.++|.-++ +++....+|+. |+.+.|.+|-  
T Consensus       619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchh
Confidence            999999999999999974   6677888999999999999999999999999999 99999988884 8999999997  


Q ss_pred             eEEEEcCCEEEecCC
Q psy9936         229 LLATSRGNIVEFLKP  243 (315)
Q Consensus       229 ~~~~~~~~~i~~~~~  243 (315)
                      ++.+++||.|-+|++
T Consensus       698 lISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKL  712 (1080)
T ss_pred             heeecCCceEEEEEC
Confidence            577889999999986

>KOG2055|consensus

Probab=99.93  E-value=6.4e-24  Score=173.92  Aligned_cols=239  Identities=17%  Similarity=0.245  Sum_probs=192.9

Q ss_pred             EEEeeC-CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEec---C-CCceeEEEEeecCcEEEEEe-CCeEEE
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMN---V-MEEVYDIKWLHLETMFAVAQ-KDWVYI   76 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~-~~~i~i   76 (315)
                      +..+.+ ..+|.+.+|+|+|. .+++++....++.||+.+.+....-.   + ...+.....+|++++|+..+ .|.|++
T Consensus       250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~l  329 (514)
T KOG2055|consen  250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHL  329 (514)
T ss_pred             heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEe
Confidence            455666 88999999999999 88899999999999999887654432   1 22567788899999998876 799999


Q ss_pred             EeCC-CCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEcCCC
Q psy9936          77 YDNQ-GIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG-KLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        77 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      .... +..+..++..+.|..+.|+.+++.|++++.+|.|.+||++...+++.+....+ .-++++.+++|.+||+|+..|
T Consensus       330 LhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G  409 (514)
T KOG2055|consen  330 LHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG  409 (514)
T ss_pred             ehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc
Confidence            9884 44556677789999999999999999999999999999999988888764221 235678889999999999999


Q ss_pred             eEEEEcCCC------CcceeEeecccccEEEEEECCCCCEEEEeeC--CCcEEEEEccCCCCCeeEeccCC----CceeE
Q psy9936         155 TVTMWSPTV------QKPLASLLCHKAGIQSVAVNHTGTYMATSAG--DSQLRIWDVRNLEGPLNTFRTRT----PINNL  222 (315)
Q Consensus       155 ~i~i~d~~~------~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~----~v~~~  222 (315)
                      .|.|||..+      .+|+..+......|++++|+||++.||.+|.  +..+++-.+.+. .....++...    .|+++
T Consensus       410 iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~~vg~vtc~  488 (514)
T KOG2055|consen  410 IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNTKVGHVTCM  488 (514)
T ss_pred             eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-eeeccCCCCCCcccceEEE
Confidence            999999653      4677777777789999999999999988874  567999999887 6666665543    38999


Q ss_pred             EEccCCe-EEEE-cCCEEEecCC
Q psy9936         223 AFSQRGL-LATS-RGNIVEFLKP  243 (315)
Q Consensus       223 ~~s~~g~-~~~~-~~~~i~~~~~  243 (315)
                      +|||.|- ++++ .+|.+.+|..
T Consensus       489 aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  489 AFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             EecCCCceEEeecCCCceeeEee
Confidence            9999774 4333 4788888864

>KOG1036|consensus

Probab=99.93  E-value=4.3e-23  Score=161.21  Aligned_cols=226  Identities=15%  Similarity=0.146  Sum_probs=178.8

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeec-CcEEEEEeCCeEEEEeCCCCE-E
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL-ETMFAVAQKDWVYIYDNQGIE-L   84 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~-~   84 (315)
                      +....++.+++|.++ ..+++|+.||.|+.+|+.+++....-.|.+++.++.+++- +.+++.+-|++|++||..... .
T Consensus        51 ~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   51 FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             eecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            344789999999974 5788999999999999999998888889999999999985 455555559999999996422 2


Q ss_pred             EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          85 HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        85 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      -.+.....|.++..+  ++.|++|+.+..+.+||+++.....+..  .-.-.+.++++-|++.-+++++-||.|.+=.++
T Consensus       130 ~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  130 GTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             cccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence            233444678888765  6789999999999999999765433222  123458899999988889999999999887766


Q ss_pred             CC----cceeEeeccc---------ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCC
Q psy9936         163 VQ----KPLASLLCHK---------AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRG  228 (315)
Q Consensus       163 ~~----~~~~~~~~~~---------~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g  228 (315)
                      ..    +.-..|++|.         -+|++++|+|-...||||+.||.|.+||+.+. +.+..+... ..|.+++|+.||
T Consensus       208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r-Krl~q~~~~~~SI~slsfs~dG  286 (323)
T KOG1036|consen  208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR-KRLKQLAKYETSISSLSFSMDG  286 (323)
T ss_pred             CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch-hhhhhccCCCCceEEEEeccCC
Confidence            55    3345566775         38999999999999999999999999999998 777766554 469999999999


Q ss_pred             eEEEEcCC
Q psy9936         229 LLATSRGN  236 (315)
Q Consensus       229 ~~~~~~~~  236 (315)
                      ..+|.++.
T Consensus       287 ~~LAia~s  294 (323)
T KOG1036|consen  287 SLLAIASS  294 (323)
T ss_pred             CeEEEEec
Confidence            76665443

>KOG2445|consensus

Probab=99.92  E-value=5.6e-23  Score=160.55  Aligned_cols=233  Identities=19%  Similarity=0.283  Sum_probs=175.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC--ce--EEEEec-CCCceeEEEEeec--CcEEEEEe-CCeEEEEeCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR--KT--LACEMN-VMEEVYDIKWLHL--ETMFAVAQ-KDWVYIYDNQ-   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~--~~--~~~~~~-~~~~v~~~~~~~~--~~~l~~~~-~~~i~i~~~~-   80 (315)
                      .+-|.++.|.+-|+.+|+++.|++|.|||...  +.  +....+ |.+.|..+.|.+.  |+.+|+++ |+++.||.-. 
T Consensus        13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~   92 (361)
T KOG2445|consen   13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE   92 (361)
T ss_pred             cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence            56699999999999999999999999999643  22  333444 8899999999874  89999887 9999999752 


Q ss_pred             ------CCEE---EEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCe------EEEEec-------cCCCCe
Q psy9936          81 ------GIEL---HCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGK------IVSDFS-------AKKGKL  135 (315)
Q Consensus        81 ------~~~~---~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~------~~~~~~-------~~~~~v  135 (315)
                            +...   ..+ .....|+.+.|.|.  |-.+|+++.||.++||+....-      ..+.+.       .+..+.
T Consensus        93 ~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~  172 (361)
T KOG2445|consen   93 KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC  172 (361)
T ss_pred             cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence                  1111   112 23478999999997  6789999999999999875432      222222       355678


Q ss_pred             EEEEEcCC---CCEEEEEcCC-----CeEEEEcCCCC----cceeEeecccccEEEEEECCC-C---CEEEEeeCCCcEE
Q psy9936         136 SVMTQNPY---NACICLGHRN-----GTVTMWSPTVQ----KPLASLLCHKAGIQSVAVNHT-G---TYMATSAGDSQLR  199 (315)
Q Consensus       136 ~~~~~~p~---~~~l~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~sp~-g---~~l~~~~~d~~i~  199 (315)
                      .|+.|+|.   ..+||+|+.+     +.+.||....+    ..+.++.+|..+|+.++|.|+ |   ..||+++.|| |+
T Consensus       173 ~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~  251 (361)
T KOG2445|consen  173 FCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VR  251 (361)
T ss_pred             eEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EE
Confidence            89999984   3588888766     47888875433    345677799999999999998 3   3799999999 99


Q ss_pred             EEEccCCC-------------------CCeeEeccCC-CceeEEEccCCeEEEE--cCCEEEecCC
Q psy9936         200 IWDVRNLE-------------------GPLNTFRTRT-PINNLAFSQRGLLATS--RGNIVEFLKP  243 (315)
Q Consensus       200 iwd~~~~~-------------------~~~~~~~~~~-~v~~~~~s~~g~~~~~--~~~~i~~~~~  243 (315)
                      ||.+....                   +.+..+..|. .|+.+.|+-.|.++++  .||.++.|+.
T Consensus       252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99997420                   1223344455 6999999999965554  4899999986

>KOG0268|consensus

Probab=99.92  E-value=2.7e-24  Score=171.22  Aligned_cols=233  Identities=13%  Similarity=0.158  Sum_probs=185.7

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC-CC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GI   82 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~   82 (315)
                      ..+.. .+.|..++++.  ..+++++.|.+|+.|..+. .+..++.....+..+.-+..+..++++ ...|.|||.. ..
T Consensus       103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~~  178 (433)
T KOG0268|consen  103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQRDN  178 (433)
T ss_pred             heeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecccccccccccccccccccc-CceeeecccccCC
Confidence            34555 67899999987  6778888999999999765 466666666677777766555555554 3479999984 44


Q ss_pred             EEEEeec-CCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          83 ELHCLKV-LNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        83 ~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      ++..+.- ...+.++.|+|. ...|++++.|+.|.+||++++.+++.+.. ....+.++|+|.+-.|++|++|..+..||
T Consensus       179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~D  257 (433)
T KOG0268|consen  179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYD  257 (433)
T ss_pred             ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehh
Confidence            5555543 377999999997 46788888999999999999988877653 34567899999887899999999999999


Q ss_pred             CCCC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--CCceeEEEccCCeEEEEc--C
Q psy9936         161 PTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--TPINNLAFSQRGLLATSR--G  235 (315)
Q Consensus       161 ~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~~~~~--~  235 (315)
                      ++.- .++....+|.+.|.++.|||.|+-+++||.|.+|+||..+.+ .....+...  ..|.++.||.|..++.|+  |
T Consensus       258 mR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd  336 (433)
T KOG0268|consen  258 MRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD  336 (433)
T ss_pred             hhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC-cchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence            9974 678888899999999999999999999999999999999887 443333322  259999999999766554  7


Q ss_pred             CEEEecCC
Q psy9936         236 NIVEFLKP  243 (315)
Q Consensus       236 ~~i~~~~~  243 (315)
                      ++|++|+.
T Consensus       337 ~nvRlWka  344 (433)
T KOG0268|consen  337 GNVRLWKA  344 (433)
T ss_pred             cceeeeec
Confidence            89999986

>KOG0646|consensus

Probab=99.92  E-value=7.5e-24  Score=173.72  Aligned_cols=237  Identities=15%  Similarity=0.169  Sum_probs=193.8

Q ss_pred             CeEEEEEccCceEEEEecCCCc--eeEEEEeecCcEEEEEe--CCeEEEEeCCCCE--EEEeecCCceEEEEEcCCCceE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEE--VYDIKWLHLETMFAVAQ--KDWVYIYDNQGIE--LHCLKVLNKVTRMEFLPYHFLL  105 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l  105 (315)
                      ..+.+||+.+|....++.....  -.++... .+.++++++  ...+.+|.+....  ....-.++++.+++-+|+|.++
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l   96 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL   96 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence            4699999999998888874422  1222211 335666665  5689999984332  2234456889999999999999


Q ss_pred             EEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC---------CCcceeEeeccccc
Q psy9936         106 ATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT---------VQKPLASLLCHKAG  176 (315)
Q Consensus       106 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~---------~~~~~~~~~~~~~~  176 (315)
                      +.|+..|.|++|.+.+|..+..+.+|-..|+++.|+.||.+|++|+.||.|.+|++-         +.++++.+..|.-+
T Consensus        97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls  176 (476)
T KOG0646|consen   97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS  176 (476)
T ss_pred             EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence            999899999999999999999999999999999999999999999999999999853         34688899999999


Q ss_pred             EEEEEECCCC--CEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEcCCEEEec-----C-----
Q psy9936         177 IQSVAVNHTG--TYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSRGNIVEFL-----K-----  242 (315)
Q Consensus       177 i~~~~~sp~g--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~i~~~-----~-----  242 (315)
                      |+++...+.|  .+|+|+|.|.++++||+..+ .++..+..+..+.+++.+|-+.  |+++.+|.|...     .     
T Consensus       177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~  255 (476)
T KOG0646|consen  177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG  255 (476)
T ss_pred             eEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc
Confidence            9999887763  48999999999999999999 9999999999999999999883  667778887721     1     


Q ss_pred             ------------------------CCceeecccccccccCCcchhhhhhhhh
Q psy9936         243 ------------------------PPEINFEPRRKANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       243 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (315)
                                              .++++++-||..|++|+.+++...+...
T Consensus       256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence                                    1789999999999999999966655443

>KOG0264|consensus

Probab=99.92  E-value=9.3e-24  Score=172.65  Aligned_cols=225  Identities=17%  Similarity=0.258  Sum_probs=176.5

Q ss_pred             EEecCCCceeEEEEeecCcEEEE-Ee-CCeEEEEeCCC---C---------EEEEeecCCceEEEEEcCCC-ceEEEEcC
Q psy9936          46 CEMNVMEEVYDIKWLHLETMFAV-AQ-KDWVYIYDNQG---I---------ELHCLKVLNKVTRMEFLPYH-FLLATASE  110 (315)
Q Consensus        46 ~~~~~~~~v~~~~~~~~~~~l~~-~~-~~~i~i~~~~~---~---------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~  110 (315)
                      ..+.|.+.|+.+.+.|....|++ .. .+.++|||.+.   .         .+....|...-++++|++.. ..|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            34568899999999997655544 44 68999999732   1         12344566667889999963 57899999


Q ss_pred             CCeEEEEEccCC-------eEEEEeccCCCCeEEEEEcCC-CCEEEEEcCCCeEEEEcCC--CCcceeEeecccccEEEE
Q psy9936         111 EGYLSWLDTSIG-------KIVSDFSAKKGKLSVMTQNPY-NACICLGHRNGTVTMWSPT--VQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       111 d~~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~~  180 (315)
                      |+.|.+||+...       .+...+.+|...|..++|+|- ..+|++++.|+.+.|||+|  +.++.....+|.++|+|+
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence            999999999753       234557889999999999994 4588999999999999999  566777778999999999


Q ss_pred             EECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-EEEE--cCCEEEecCC------------
Q psy9936         181 AVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-LATS--RGNIVEFLKP------------  243 (315)
Q Consensus       181 ~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~~~--~~~~i~~~~~------------  243 (315)
                      +|+|- +..|||||.|++|.+||+++...++..+..|. .|..+.|||... ++|+  .|+.+.+|+.            
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            99996 55789999999999999999888999999887 599999999872 4443  4899999977            


Q ss_pred             ------------------Cceeecccc-cccccCCcchhhhhhhhh
Q psy9936         244 ------------------PEINFEPRR-KANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       244 ------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~  270 (315)
                                        ..++|.|+. -.+++.+.++....++..
T Consensus       359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                              456666664 345666666666666554

>KOG2106|consensus

Probab=99.92  E-value=2.2e-22  Score=166.74  Aligned_cols=228  Identities=13%  Similarity=0.189  Sum_probs=182.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC------
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI------   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~------   82 (315)
                      ..-|.|++|.++|+ +++|..+|.|.||+..+.+...... |.+.|.+++...+|.+|..+-|..|..||-+-+      
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccccccccc
Confidence            56799999999995 5689999999999998877766554 999999999999999999555899999983110      


Q ss_pred             ------------------------------------EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE
Q psy9936          83 ------------------------------------ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS  126 (315)
Q Consensus        83 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  126 (315)
                                                          .+..+.|....+.++.+|+.+++++++.|+.+++|+  ..+++.
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w  402 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW  402 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence                                                111122446677889999999999999999999999  455555


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         127 DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       127 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +.. -..++.++.|+|.| .++.|...|...+.|.++...+..-. ...++++++|+|+|.+||.|+.|+.|+||-+...
T Consensus       403 t~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  403 TKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            433 34578899999999 99999999999999999855544433 4889999999999999999999999999999865


Q ss_pred             CCCeeEeccC--CCceeEEEccCCeEEEEc--CCEEEecCC
Q psy9936         207 EGPLNTFRTR--TPINNLAFSQRGLLATSR--GNIVEFLKP  243 (315)
Q Consensus       207 ~~~~~~~~~~--~~v~~~~~s~~g~~~~~~--~~~i~~~~~  243 (315)
                      ...+.....+  ++|+.+.||+|+.++.+.  |-.|-.|.|
T Consensus       480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            3444444322  579999999999877664  556778876

>KOG0301|consensus

Probab=99.92  E-value=2.5e-23  Score=178.13  Aligned_cols=251  Identities=14%  Similarity=0.190  Sum_probs=192.7

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE--ec-CCCceeE-EEEee-c-CcEEEEEeCCeEEEEe
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE--MN-VMEEVYD-IKWLH-L-ETMFAVAQKDWVYIYD   78 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~--~~-~~~~v~~-~~~~~-~-~~~l~~~~~~~i~i~~   78 (315)
                      .+.+ +..|..+++.+. ..+++++.||++++|+-..++.+..  +. +.+-+.. +++.+ + ++++..+.|.+|.+|.
T Consensus         9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~   87 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK   87 (745)
T ss_pred             EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence            3444 667777776654 4889999999999999766665442  33 5555555 77765 3 4455555699999999


Q ss_pred             CCCC-EEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          79 NQGI-ELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        79 ~~~~-~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      +.+. ++.. ..|...|.+++...++. +++|+.|.++++|-.  +++...+.+|...|.+++.-|.+ .++||+.|.+|
T Consensus        88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence            9553 3444 45778999998777776 899999999999975  56677799999999999999988 88899999999


Q ss_pred             EEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEE-EccCCeEEE-E
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLA-FSQRGLLAT-S  233 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~-~s~~g~~~~-~  233 (315)
                      ++|.-  ++.+++|.+|..-|..+++-|++ .+++++.||.|++|++ ++ .++....+|.. ++++. ..+++.++. +
T Consensus       164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DG-EVLLEMHGHTNFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cC-ceeeeeeccceEEEEEEecCCCCeEEEec
Confidence            99986  67899999999999999998875 4779999999999999 44 78888888875 88998 444555444 4


Q ss_pred             cCCEEEecCC--------------CceeecccccccccCCcchhhhhh
Q psy9936         234 RGNIVEFLKP--------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       234 ~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      .|+++++|+.              +++.+-++|..+ +|++|+.++..
T Consensus       239 EDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIv-vg~SDG~VrVf  285 (745)
T KOG0301|consen  239 EDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIV-VGGSDGRVRVF  285 (745)
T ss_pred             CCceEEEeecCceEEEEecCccceEEEEEeeCCCEE-EeccCceEEEE
Confidence            5999999976              344444555554 67777765554

>KOG1274|consensus

Probab=99.92  E-value=9.6e-23  Score=179.66  Aligned_cols=212  Identities=15%  Similarity=0.156  Sum_probs=173.5

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC--CCEEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ--GIELHC   86 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~--~~~~~~   86 (315)
                      ..|.+++  .++.+|++++.+++|.+|...+++.-..+. ..-++.+++|+.+|+++|.|+ |-.|++.+..  +.+...
T Consensus        57 ~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l  134 (933)
T KOG1274|consen   57 ELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL  134 (933)
T ss_pred             ceeEEEe--ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence            3444444  455699999999999999998887654443 667899999999999999998 5579999883  445556


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC--------CCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK--------KGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      .+|..+|.++.|+|.+++||+.+.||.|++||+.++....++.+-        ...+..++|+|+|..|+..+.|+.|.+
T Consensus       135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV  214 (933)
T ss_pred             cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence            678899999999999999999999999999999998776665431        344677899999888888889999999


Q ss_pred             EcCCCCcceeEeec--ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC
Q psy9936         159 WSPTVQKPLASLLC--HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG  228 (315)
Q Consensus       159 ~d~~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  228 (315)
                      |+..++.....+..  +...+..++|+|+|.|||+++.||.|.|||+.+. ..   -.....|++++|-|++
T Consensus       215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~-~~---~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH-ER---HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             EccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc-hh---ccccceeEEEecCCCC
Confidence            99999988877763  4455899999999999999999999999999874 22   2223469999999987

>KOG1408|consensus

Probab=99.92  E-value=8.9e-23  Score=175.61  Aligned_cols=259  Identities=12%  Similarity=0.109  Sum_probs=202.2

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEccCc----eEEEEecCCCceeEEEEee------------cCcEEEEEeCCeEEEE
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRK----TLACEMNVMEEVYDIKWLH------------LETMFAVAQKDWVYIY   77 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~~~~~~~~~~~v~~~~~~~------------~~~~l~~~~~~~i~i~   77 (315)
                      .++.|+|....|.+.-.|..++|||+..-    +....+.|...|+++.-.|            .+.++.+++|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            36779998999998899999999999753    3444556888888776555            2446666779999999


Q ss_pred             eCCC----CEEEE-----------------------------------eecCCceEEEEEcCCCceEEEEcCCCeEEEEE
Q psy9936          78 DNQG----IELHC-----------------------------------LKVLNKVTRMEFLPYHFLLATASEEGYLSWLD  118 (315)
Q Consensus        78 ~~~~----~~~~~-----------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  118 (315)
                      ++..    ...+.                                   ......+.+++.+|+|++||+|..-|++++|+
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            9853    11100                                   00114689999999999999999999999999


Q ss_pred             ccCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEcCCCeEEEEcCCC-CcceeEeecccccE-----------------
Q psy9936         119 TSIGKIVSDFSAKKGKLSVMTQNP---YNACICLGHRNGTVTMWSPTV-QKPLASLLCHKAGI-----------------  177 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i-----------------  177 (315)
                      +.+.+....+..|...|.++.|+.   ..++||+++.|..|.|||... ..+++++.+|.+.|                 
T Consensus       488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc  567 (1080)
T KOG1408|consen  488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC  567 (1080)
T ss_pred             ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence            998888888999999999999975   346899999999999999753 34445555554444                 


Q ss_pred             --------------------------------EEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC----Ccee
Q psy9936         178 --------------------------------QSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT----PINN  221 (315)
Q Consensus       178 --------------------------------~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~~  221 (315)
                                                      ..++..|..+++++++.|..|+|||+.++ +..+.|++..    ....
T Consensus       568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIK  646 (1080)
T KOG1408|consen  568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIK  646 (1080)
T ss_pred             cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEE
Confidence                                            44555556678999999999999999999 8888887643    4778


Q ss_pred             EEEccCCeEEEE--cCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhhHHH
Q psy9936         222 LAFSQRGLLATS--RGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIVRET  273 (315)
Q Consensus       222 ~~~s~~g~~~~~--~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (315)
                      +...|.|.|+++  .|.++.+++.                +.+.|.+|-+.|.+.+.|+-+-.|+...+.
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m  716 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM  716 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence            899999987665  4888887665                789999999999999999977777665543

>KOG2048|consensus

Probab=99.92  E-value=3.8e-22  Score=170.58  Aligned_cols=230  Identities=13%  Similarity=0.189  Sum_probs=186.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE-Eec--CCCceeEEEEeecCcEEEEEeCCeEEEEeCC-CCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC-EMN--VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~~~~   85 (315)
                      +.+|.++||+.+.+.||.+-.+|.|-+|++..+-... .+.  ....|-+++|++.++++.++.+|.|.-||+. .+...
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence            7899999999999999999999999999998754332 232  4567999999999999999999999999994 44444


Q ss_pred             Eee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          86 CLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        86 ~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      ... ..+.|++++.+|.+..++.|+.||.+..++...++....  +....+++.+++|+|++..+++|+.||.|++||..
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            443 347899999999999999999999888888776654433  44456889999999999999999999999999999


Q ss_pred             CCcceeEee----c----ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC--eEE
Q psy9936         163 VQKPLASLL----C----HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG--LLA  231 (315)
Q Consensus       163 ~~~~~~~~~----~----~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g--~~~  231 (315)
                      ++..+....    +    ...-|+++.|-.++ .|++|...|+|.+||...+ .+++.+..|. .|.+++.++++  .+.
T Consensus       185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfs  262 (691)
T KOG2048|consen  185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADNEDRVFS  262 (691)
T ss_pred             CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCCCCeEEE
Confidence            887766221    1    22356777776655 6899999999999999999 8999888876 69999999986  456


Q ss_pred             EEcCCEEEec
Q psy9936         232 TSRGNIVEFL  241 (315)
Q Consensus       232 ~~~~~~i~~~  241 (315)
                      ++.|+.+-.+
T Consensus       263 aGvd~~ii~~  272 (691)
T KOG2048|consen  263 AGVDPKIIQY  272 (691)
T ss_pred             ccCCCceEEE
Confidence            6678877644

>KOG2919|consensus

Probab=99.92  E-value=8.1e-23  Score=160.74  Aligned_cols=229  Identities=12%  Similarity=0.205  Sum_probs=184.2

Q ss_pred             CCcEEEEEEc-------CCCCEEEEEcCCCeEEEEEccCceEEEEec---CCC---ceeEEEEeecCcEEEEEeCCeEEE
Q psy9936          10 QFGIYRMNYT-------KNGRHLLLGGKRGHVAAFDWVRKTLACEMN---VME---EVYDIKWLHLETMFAVAQKDWVYI   76 (315)
Q Consensus        10 ~~~v~~~~~s-------~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~~~i~i   76 (315)
                      ...|+.-+|-       |+..++|+.+.+.-|++||.-+|+....+.   |.+   ...+++|+|||..|.+|....|++
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirv  183 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRV  183 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEE
Confidence            5667777764       677799999999999999999999888776   332   467899999999999999999999


Q ss_pred             EeCC--CC---EEEEeec-----CCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC
Q psy9936          77 YDNQ--GI---ELHCLKV-----LNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        77 ~~~~--~~---~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~  145 (315)
                      +|+.  +.   ...++.+     .+-+.+++|+|.. ..+++++...++-||.-..+.++..+-+|.+.|+.+.|.++|+
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence            9982  21   1112222     3668899999964 5899999999999998888889999999999999999999999


Q ss_pred             EEEEEcC-CCeEEEEcCCC-CcceeEeecccc-cEEEEE--ECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-Cc
Q psy9936         146 CICLGHR-NGTVTMWSPTV-QKPLASLLCHKA-GIQSVA--VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PI  219 (315)
Q Consensus       146 ~l~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~-~i~~~~--~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v  219 (315)
                      .|++|.. |..|..||+|. ..++..+..|.. .-..|-  ..|+|++|++|+.||.|++||++.....+..+..+. .+
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v  343 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV  343 (406)
T ss_pred             eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccc
Confidence            9999986 67899999996 456777776665 333444  468899999999999999999998536666666555 58


Q ss_pred             eeEEEccCCeEEEEcCCEE
Q psy9936         220 NNLAFSQRGLLATSRGNIV  238 (315)
Q Consensus       220 ~~~~~s~~g~~~~~~~~~i  238 (315)
                      +.++++|--.+++++.|.-
T Consensus       344 NgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  344 NGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cceecCcccceeeeccCce
Confidence            9999999976777766543

>KOG0267|consensus

Probab=99.91  E-value=7.5e-25  Score=188.25  Aligned_cols=235  Identities=15%  Similarity=0.240  Sum_probs=195.7

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEE-EeecCCceEEEEE
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELH-CLKVLNKVTRMEF   98 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~-~~~~~~~v~~~~~   98 (315)
                      +.+++.....-.+++|+....     ..|...+.++..-..++.+++|+ +..+-+|.+. -..+. ...|..+|.++.|
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~~-----~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f   78 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTREF-----VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF   78 (825)
T ss_pred             ccccceeeeeeccccccchhh-----hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence            334444444556777775432     12566677777656677888876 5667788873 22223 3567799999999


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEE
Q psy9936          99 LPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQ  178 (315)
Q Consensus        99 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~  178 (315)
                      ++...+|++|+.+|+|++||+..++.++++.+|...+..+.|+|-+.+++.|+.|+.+.+||++..-+.+.+.+|...+.
T Consensus        79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~  158 (825)
T KOG0267|consen   79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD  158 (825)
T ss_pred             CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999998779999999999999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEE--cCCEEEecCC------------
Q psy9936         179 SVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATS--RGNIVEFLKP------------  243 (315)
Q Consensus       179 ~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~--~~~~i~~~~~------------  243 (315)
                      .+.|+|+|+|++.++.|.+++|||+..+ +.+..|..|. .+.++.|+|...++++  .|.+++.|+.            
T Consensus       159 ~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~  237 (825)
T KOG0267|consen  159 VLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE  237 (825)
T ss_pred             EEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc
Confidence            9999999999999999999999999998 9999999776 6899999999866654  4889999987            


Q ss_pred             ----CceeecccccccccCCcch
Q psy9936         244 ----PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       244 ----~~~~~~~~~~~~~~~~~~~  262 (315)
                          .++.|+|+++...+|....
T Consensus       238 ~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  238 TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             cCCceeeeecCCceeeecCchhh
Confidence                5788999998888876655

>KOG0639|consensus

Probab=99.91  E-value=1e-23  Score=174.68  Aligned_cols=225  Identities=12%  Similarity=0.155  Sum_probs=187.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEE-EEeCCeEEEEeCCCCEE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFA-VAQKDWVYIYDNQGIEL-   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~~~~~~i~i~~~~~~~~-   84 (315)
                      ++-|.++.+.|||+.|++|+.-.++.|||+....+....+   ....++.++.+||.+++. +++||.|.|||+.++.+ 
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence            5678899999999999999999999999998766543333   223578889999987655 45699999999966544 


Q ss_pred             EEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          85 HCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        85 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      ..+ .|...+.||..+++|..|-+|+.|.+|+.||+++++.+.... ..+.|.++...|.+.++++|-.++.+.|.....
T Consensus       545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk  623 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK  623 (705)
T ss_pred             ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC
Confidence            444 466899999999999999999999999999999987665543 345699999999999999999999999988774


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCE
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNI  237 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  237 (315)
                      .+ ...+.-|.+-|.++.|++.|+|+++.+.|+.+..|...-+ ..+...+..++|.++.+|.|..+++++.|.
T Consensus       624 p~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG-asiFqskE~SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  624 PE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSKESSSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             cc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc-cceeeccccCcceeeeeccCceEEEecCCC
Confidence            43 4456669999999999999999999999999999999887 777777777789999999999888877653

>KOG1332|consensus

Probab=99.91  E-value=2.4e-23  Score=157.70  Aligned_cols=202  Identities=14%  Similarity=0.170  Sum_probs=162.4

Q ss_pred             EEEeeC-CCcEEEEEEcC--CCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeec--CcEEEEEe-CCeE
Q psy9936           4 QFDLDL-QFGIYRMNYTK--NGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHL--ETMFAVAQ-KDWV   74 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~--~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~--~~~l~~~~-~~~i   74 (315)
                      +-+|.+ .+||..++|..  -|.+||++++||.|.||.-++++......   |...|++++|.|.  |-.|++++ ||.|
T Consensus        49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            446666 88999999976  89999999999999999988886544433   7889999999996  66777775 9999


Q ss_pred             EEEeCCCC-----EEEEeecCCceEEEEEcCC---C-----------ceEEEEcCCCeEEEEEccCCe--EEEEeccCCC
Q psy9936          75 YIYDNQGI-----ELHCLKVLNKVTRMEFLPY---H-----------FLLATASEEGYLSWLDTSIGK--IVSDFSAKKG  133 (315)
Q Consensus        75 ~i~~~~~~-----~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~  133 (315)
                      .+++.+..     ......|.-.|++++|.|.   |           +.|++|+.|..|+||+..+++  ..+.+.+|.+
T Consensus       129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d  208 (299)
T KOG1332|consen  129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD  208 (299)
T ss_pred             EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch
Confidence            99987432     1122457788999999996   4           569999999999999998763  4455889999


Q ss_pred             CeEEEEEcCCC----CEEEEEcCCCeEEEEcCCCC--c-ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         134 KLSVMTQNPYN----ACICLGHRNGTVTMWSPTVQ--K-PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       134 ~v~~~~~~p~~----~~l~~~~~d~~i~i~d~~~~--~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      .|..++|.|.-    .+|++++.||++.||..+..  . ....+......+..++||+.|+.|++++.|+.+.+|--..
T Consensus       209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99999999964    38999999999999987632  1 1122333567899999999999999999999999997553

>KOG1273|consensus

Probab=99.91  E-value=1e-22  Score=159.64  Aligned_cols=245  Identities=12%  Similarity=0.163  Sum_probs=188.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeec--CcEEEEEeCCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL--ETMFAVAQKDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~~   87 (315)
                      -.+|++++||+||+.|++++.|..|.+||+..|.++..+....+|+.+.|+|.  ++.+++-.+..-.+.+........+
T Consensus        65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L  144 (405)
T KOG1273|consen   65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL  144 (405)
T ss_pred             ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec
Confidence            46899999999999999999999999999999999999999999999999995  3444444455445555543333333


Q ss_pred             ecC------CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          88 KVL------NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-GKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        88 ~~~------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      ...      ....+..|.+.|+++++|...|.+.+||..+.+++..++... ..|..+.++..|+.|+.-+.|..|+.|+
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence            321      122334688899999999999999999999999998887655 6788999999999999999999999999


Q ss_pred             CCC-------C--cceeEeec--ccccEEEEEECCCCCEEEEeeC-CCcEEEEEccCCCCCeeEeccCC--CceeEEEcc
Q psy9936         161 PTV-------Q--KPLASLLC--HKAGIQSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTFRTRT--PINNLAFSQ  226 (315)
Q Consensus       161 ~~~-------~--~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~  226 (315)
                      ++.       +  ++.+.++.  ....=.+++||.+|.|++.++. ...++||....| .+++.+.+..  ...++.|+|
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCchhheeeccccc
Confidence            762       1  11122221  1123357889999999988774 346999999999 9999988765  378899999


Q ss_pred             CCeEEEE-cCCEEEecCC----Cceeeccccccc
Q psy9936         227 RGLLATS-RGNIVEFLKP----PEINFEPRRKAN  255 (315)
Q Consensus       227 ~g~~~~~-~~~~i~~~~~----~~~~~~~~~~~~  255 (315)
                      -..++++ ..|.+++|..    .-.+|.|+-+.+
T Consensus       304 ~rp~i~si~sg~v~iw~~~~~enwsafAPdFqel  337 (405)
T KOG1273|consen  304 VRPIIASIASGVVYIWAVVQVENWSAFAPDFQEL  337 (405)
T ss_pred             ceeeeeeccCCceEEEEeecccchhhcCchHHHH
Confidence            8865555 6889999976    455677775444

>KOG0650|consensus

Probab=99.91  E-value=1.6e-22  Score=170.69  Aligned_cols=258  Identities=17%  Similarity=0.216  Sum_probs=207.2

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecC--cEEEEEeCCeEEEEeCC-C-
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLE--TMFAVAQKDWVYIYDNQ-G-   81 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~i~i~~~~-~-   81 (315)
                      +.+ .+.|.++...|.|.+|++|+.||+++||.+.+|+++.++...+.|.+++|+|.+  .+||++.++.+.+.+.. | 
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            445 788999999999999999999999999999999999999999999999999975  35555554444444320 0 


Q ss_pred             -------------------------------------CEEEEeecCCceEEEEEcCCCceEEEEcCC---CeEEEEEccC
Q psy9936          82 -------------------------------------IELHCLKVLNKVTRMEFLPYHFLLATASEE---GYLSWLDTSI  121 (315)
Q Consensus        82 -------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~  121 (315)
                                                           ..-..+.+...|..+.|+..|.+|++...+   ..|.|+++..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence                                                 011235567889999999999999998654   4699999987


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEE
Q psy9936         122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW  201 (315)
Q Consensus       122 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iw  201 (315)
                      ......|....+.+.++.|+|...+|++++. ..|++||+.....++.+.....+|.+++.+|.|.-|+.|+.|+.+..+
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~Wf  634 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWF  634 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence            7666667667788999999999999988875 579999999888888887777899999999999999999999999999


Q ss_pred             EccCCCCCeeEeccCC-CceeEEEccCCe-EEEEc-CCEEEecCC-----------------------------Cceeec
Q psy9936         202 DVRNLEGPLNTFRTRT-PINNLAFSQRGL-LATSR-GNIVEFLKP-----------------------------PEINFE  249 (315)
Q Consensus       202 d~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~~~~-~~~i~~~~~-----------------------------~~~~~~  249 (315)
                      |+.-..++.+.+..|. .+++++|++.=- ++++. |+++.++..                             ....|+
T Consensus       635 DldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH  714 (733)
T KOG0650|consen  635 DLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH  714 (733)
T ss_pred             EcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence            9987668999998887 589999998763 33333 577763311                             345589


Q ss_pred             ccccccccCCcchhhh
Q psy9936         250 PRRKANKAGGSVQRAK  265 (315)
Q Consensus       250 ~~~~~~~~~~~~~~~~  265 (315)
                      |..-.+.+++.++.++
T Consensus       715 P~qpWLfsAGAd~tir  730 (733)
T KOG0650|consen  715 PRQPWLFSAGADGTIR  730 (733)
T ss_pred             CCCceEEecCCCceEE
Confidence            9988888888877655

>KOG2106|consensus

Probab=99.91  E-value=1.5e-21  Score=161.81  Aligned_cols=251  Identities=10%  Similarity=0.121  Sum_probs=197.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE---ec--CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE---MN--VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~---~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~   84 (315)
                      ++.|....|+|.+..++.....|.+..|++.++.+...   ++  ...-|.|++|.++|..+..-++|.|.||+..+..+
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~  279 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI  279 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE
Confidence            67889999999777665555678999999988876544   22  23569999999999998888899999999865443


Q ss_pred             EE--eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEE------------E------------------------
Q psy9936          85 HC--LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV------------S------------------------  126 (315)
Q Consensus        85 ~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------------~------------------------  126 (315)
                      ..  ..|.+.|.++....+|.+| +|+.|..|..||-. -+.+            +                        
T Consensus       280 ~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~  357 (626)
T KOG2106|consen  280 SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE  357 (626)
T ss_pred             EeEeeecCCceEEEEEecCccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence            32  3677999999999999655 59999999999832 1100            0                        


Q ss_pred             -----EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEE
Q psy9936         127 -----DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW  201 (315)
Q Consensus       127 -----~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iw  201 (315)
                           ...+|......++.+|+.+.+++++.|+.+++|+  ..+++.+.. -..++.++.|+|.| .+|.|...|...+.
T Consensus       358 ~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  358 NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVL  433 (626)
T ss_pred             CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence                 1134666778899999999999999999999999  445555444 46788999999999 99999999999999


Q ss_pred             EccCCCCCeeEeccCCCceeEEEccCCeE--EEEcCCEEEecCC------------------CceeecccccccccCCcc
Q psy9936         202 DVRNLEGPLNTFRTRTPINNLAFSQRGLL--ATSRGNIVEFLKP------------------PEINFEPRRKANKAGGSV  261 (315)
Q Consensus       202 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~  261 (315)
                      |.++. ..+..-....+++.+.|+|+|-+  +++.|+.|.++.+                  +.+.||+|++++.+.+.+
T Consensus       434 d~e~~-~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  434 DTETQ-DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             ecccc-eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence            99996 66666555668999999999943  4456888886644                  789999999999888776


Q ss_pred             hhhhhh
Q psy9936         262 QRAKVK  267 (315)
Q Consensus       262 ~~~~~~  267 (315)
                      -.+-.+
T Consensus       513 ~eiLyW  518 (626)
T KOG2106|consen  513 YEILYW  518 (626)
T ss_pred             eEEEEE
Confidence            654444

>KOG4328|consensus

Probab=99.91  E-value=2.1e-22  Score=164.92  Aligned_cols=251  Identities=16%  Similarity=0.228  Sum_probs=185.7

Q ss_pred             CCcEEEEEEcCCC--CEEEEEcCCCeEEEEEccCce----EEEEe-cCCCceeEEEEeec--CcEEEEEeCCeEEEEeCC
Q psy9936          10 QFGIYRMNYTKNG--RHLLLGGKRGHVAAFDWVRKT----LACEM-NVMEEVYDIKWLHL--ETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~~~----~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~~~i~i~~~~   80 (315)
                      ..+|++++|+|..  +++|+|...|+|-+||+.+.+    .+..+ .|..+|.++.|+|.  .++++++.||+|++-|++
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~  265 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE  265 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence            6889999999965  478889899999999995322    12333 38899999999995  567777789999999997


Q ss_pred             CCEEEEee----cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE-EEEeccCCCCeEEEEEcCCCC-EEEEEcCCC
Q psy9936          81 GIELHCLK----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI-VSDFSAKKGKLSVMTQNPYNA-CICLGHRNG  154 (315)
Q Consensus        81 ~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~  154 (315)
                      +.....+-    ....+.++.|+.+...++.+..=|...+||++++.. ...+..|...|+.|+++|-.. +|++++.|+
T Consensus       266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~  345 (498)
T KOG4328|consen  266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ  345 (498)
T ss_pred             chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence            64332221    224567788888877788887777999999998654 566777888999999999655 889999999


Q ss_pred             eEEEEcCCCCc----ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc---CCCCCeeEeccCC------Ccee
Q psy9936         155 TVTMWSPTVQK----PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR---NLEGPLNTFRTRT------PINN  221 (315)
Q Consensus       155 ~i~i~d~~~~~----~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~------~v~~  221 (315)
                      +++|||+|.-.    ++.....|...|.++.|||.|-.|+|.+.|..|+|||..   ....+...+....      ....
T Consensus       346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK  425 (498)
T KOG4328|consen  346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK  425 (498)
T ss_pred             ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh
Confidence            99999998632    223334599999999999998779999999999999984   2225666665432      3567


Q ss_pred             EEEccCCeEEEEc--CCEEEecCC------------------CceeecccccccccCCc
Q psy9936         222 LAFSQRGLLATSR--GNIVEFLKP------------------PEINFEPRRKANKAGGS  260 (315)
Q Consensus       222 ~~~s~~g~~~~~~--~~~i~~~~~------------------~~~~~~~~~~~~~~~~~  260 (315)
                      ..|.|+--+++.+  -..|.++++                  .-..|+|-+..+++|+.
T Consensus       426 A~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~  484 (498)
T KOG4328|consen  426 AAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN  484 (498)
T ss_pred             heeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence            8999987544433  334444433                  33567777775555553

>KOG2919|consensus

Probab=99.91  E-value=3.9e-22  Score=156.93  Aligned_cols=255  Identities=17%  Similarity=0.275  Sum_probs=190.1

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCc-------e-------EEEEecCCCceeEEEEee-------cCcEEEEEe-
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRK-------T-------LACEMNVMEEVYDIKWLH-------LETMFAVAQ-   70 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-------~-------~~~~~~~~~~v~~~~~~~-------~~~~l~~~~-   70 (315)
                      .....|||||..|++.+.|..+.+|++...       .       ....+.....|...+|-+       +..++++++ 
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            356789999999999999999999987421       1       111222445688888863       456666665 


Q ss_pred             CCeEEEEeCCCCEEEE----eecC---CceEEEEEcCCCceEEEEcCCCeEEEEEc-cCCeE--EEEec-----cCCCCe
Q psy9936          71 KDWVYIYDNQGIELHC----LKVL---NKVTRMEFLPYHFLLATASEEGYLSWLDT-SIGKI--VSDFS-----AKKGKL  135 (315)
Q Consensus        71 ~~~i~i~~~~~~~~~~----~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~--~~~~~-----~~~~~v  135 (315)
                      +.-|++||.-+..++.    ..|.   ....+++|+|||.+|++| ....|++||+ +.|..  +....     +..+.+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            7899999984444332    2232   456789999999999876 4679999999 55532  11111     235678


Q ss_pred             EEEEEcCCC-CEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeC-CCcEEEEEccCCCCCeeEe
Q psy9936         136 SVMTQNPYN-ACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       136 ~~~~~~p~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~  213 (315)
                      .+++|+|.. ..++.|+...++-||.-....++..+-+|.+.|+.+.|.++|+.|.+|+. |-.|-.||++....++..+
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L  290 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL  290 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence            999999954 48999999999999999889999999999999999999999999999874 5679999999875777777


Q ss_pred             ccCCC--ceeE--EEccCCeEEEEc--CCEEEecCC-----------------CceeecccccccccCCcchhhhhhh
Q psy9936         214 RTRTP--INNL--AFSQRGLLATSR--GNIVEFLKP-----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       214 ~~~~~--v~~~--~~s~~g~~~~~~--~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      ..|..  -..|  ...|+|.+++++  +|.|+.|+.                 +.++++|--.++++++.....+..+
T Consensus       291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~  368 (406)
T KOG2919|consen  291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPK  368 (406)
T ss_pred             hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceeecCCC
Confidence            66643  2334  446788888876  799999977                 6788888877777766655444443

>KOG0270|consensus

Probab=99.90  E-value=2.6e-22  Score=163.83  Aligned_cols=235  Identities=16%  Similarity=0.227  Sum_probs=174.2

Q ss_pred             eCCCcEEEEEEcCC-------CCEEEEEcCCCeEEEEEccCce---EEEEe-------------------cCCCceeEEE
Q psy9936           8 DLQFGIYRMNYTKN-------GRHLLLGGKRGHVAAFDWVRKT---LACEM-------------------NVMEEVYDIK   58 (315)
Q Consensus         8 ~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~v~~~~~~~---~~~~~-------------------~~~~~v~~~~   58 (315)
                      -+...+.|++|..-       |+|+|.|+.+..|.|||+.=-.   +..++                   .|+..|..++
T Consensus       171 ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls  250 (463)
T KOG0270|consen  171 ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS  250 (463)
T ss_pred             eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence            33566678877542       5799999999999999986211   11111                   2666778888


Q ss_pred             Eeec-CcEEEEEe-CCeEEEEeC-CCCEEEEee-cCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCC
Q psy9936          59 WLHL-ETMFAVAQ-KDWVYIYDN-QGIELHCLK-VLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKG  133 (315)
Q Consensus        59 ~~~~-~~~l~~~~-~~~i~i~~~-~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  133 (315)
                      |+.. ..+||+|+ |.+|.+||+ ++++...+. |...|.++.|+|. ..+|++|+.|+++.++|++........-.-.+
T Consensus       251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g  330 (463)
T KOG0270|consen  251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG  330 (463)
T ss_pred             hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEecc
Confidence            8876 56777776 899999999 566667777 4589999999997 57899999999999999985322211111345


Q ss_pred             CeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCe
Q psy9936         134 KLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPL  210 (315)
Q Consensus       134 ~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~  210 (315)
                      .|-.++|+|... .++++..||+|+-+|+|+. +++.++..|.++|.++++++. -.+|+|++.|+.+++|++... .+-
T Consensus       331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-~~~  409 (463)
T KOG0270|consen  331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-SPK  409 (463)
T ss_pred             ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-CCc
Confidence            788999999665 6778889999999999975 999999999999999999987 447899999999999999865 332


Q ss_pred             eEeccC---CCceeEEEccCC--eEEEEc-CCEEEecCC
Q psy9936         211 NTFRTR---TPINNLAFSQRG--LLATSR-GNIVEFLKP  243 (315)
Q Consensus       211 ~~~~~~---~~v~~~~~s~~g--~~~~~~-~~~i~~~~~  243 (315)
                      ......   +...++++.|+-  .++.++ .+.+++|+.
T Consensus       410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            221111   125677777765  455554 445889986

>KOG4378|consensus

Probab=99.90  E-value=1e-22  Score=168.54  Aligned_cols=214  Identities=15%  Similarity=0.216  Sum_probs=178.3

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEEeecC
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHCLKVL   90 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~~~~~   90 (315)
                      .|++......|+++|+..+.|+|||+....+.+.+. |...|+++.++....+||+++ .|.|.|..+. +.....+.+.
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            445545555899999999999999999666666666 889999999999999999988 5789999884 3444456555


Q ss_pred             --CceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCCc
Q psy9936          91 --NKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        91 --~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~~  165 (315)
                        ..|.-+.|+|..+ +|.+++.+|.|.+||+....++.. ...|..+...++|+|... +|++.+.|..|.+||+++..
T Consensus       163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence              4567899999864 677889999999999987777666 457999999999999665 78889999999999999877


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                      ....+. ...+...++|+++|.+|+.|+..|.|..||++....|+..+..|. .|++++|-|.-
T Consensus       243 s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  243 STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            666665 567889999999999999999999999999998778999998887 59999998764

>KOG1539|consensus

Probab=99.90  E-value=2.8e-22  Score=175.07  Aligned_cols=196  Identities=16%  Similarity=0.243  Sum_probs=174.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe----cCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM----NVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE-   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~-   83 (315)
                      ...+++++.++.|++.+.|...|.|-+|++++|-....+    .|.++|++++...-++.+++++ +|.+++||..... 
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            467899999999999999999999999999999888887    3889999999887777776664 9999999996554 


Q ss_pred             EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          84 LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      +..+.-...+.++..+.....++.+..|-.|.++|..+.+.++.|.+|...|++++|||||++|++++.|++|++||+.+
T Consensus       528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            34455667888999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCC-CcEEEEEccCC
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGD-SQLRIWDVRNL  206 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-~~i~iwd~~~~  206 (315)
                      +.++..+. -..+++++.|||+|.+|||...| .-|++|.-...
T Consensus       608 ~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl  650 (910)
T KOG1539|consen  608 GTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL  650 (910)
T ss_pred             cceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence            99888776 57889999999999999999988 56999976543

>KOG0647|consensus

Probab=99.90  E-value=5.6e-22  Score=154.59  Aligned_cols=216  Identities=14%  Similarity=0.158  Sum_probs=165.7

Q ss_pred             CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCCC-EE---EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe
Q psy9936          50 VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQGI-EL---HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK  123 (315)
Q Consensus        50 ~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~~-~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  123 (315)
                      ..+.|.+++|||. ..++++++ |++|++|+++.. ..   ....+.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            5578999999994 55554555 999999999542 21   123466999999999999999999999999999999985


Q ss_pred             EEEEeccCCCCeEEEEEcCCCC--EEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEE
Q psy9936         124 IVSDFSAKKGKLSVMTQNPYNA--CICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW  201 (315)
Q Consensus       124 ~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iw  201 (315)
                       +..+..|.++|..+.|-+...  .|++|+.|.+|+.||+|...++.++. ....+.++..  -..+++++..++.|.+|
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVY  181 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEE
Confidence             456778999999999987665  89999999999999999999998887 4566666554  34578888999999999


Q ss_pred             EccCCCCCeeEeccC--CCceeEEEccCC--eEEEEcCCEEE---------------------------ecCCCceeecc
Q psy9936         202 DVRNLEGPLNTFRTR--TPINNLAFSQRG--LLATSRGNIVE---------------------------FLKPPEINFEP  250 (315)
Q Consensus       202 d~~~~~~~~~~~~~~--~~v~~~~~s~~g--~~~~~~~~~i~---------------------------~~~~~~~~~~~  250 (315)
                      +++++....+....+  ..+++++..+|.  ..+++-.|.+.                           ++.+++++|+|
T Consensus       182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence            998762333333222  246777776664  45666566544                           22337899999


Q ss_pred             cccccccCCcchhhhhhhh
Q psy9936         251 RRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~  269 (315)
                      ....+++.++|++..-+-+
T Consensus       262 ~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             ccceEEEecCCceEEEecc
Confidence            9999999999887666643

>KOG1063|consensus

Probab=99.90  E-value=7e-22  Score=169.40  Aligned_cols=270  Identities=14%  Similarity=0.173  Sum_probs=207.5

Q ss_pred             ccEEEeeC-CCcEEEEEEcCCCC---EEEEEcCCCeEEEEEccCce---------------------E---EE-------
Q psy9936           2 TKQFDLDL-QFGIYRMNYTKNGR---HLLLGGKRGHVAAFDWVRKT---------------------L---AC-------   46 (315)
Q Consensus         2 ~~~~~~~~-~~~v~~~~~s~~~~---~l~~~~~dg~i~v~~~~~~~---------------------~---~~-------   46 (315)
                      ++..++.+ .+.|.+++|...+.   +||+++.|..|+||.+.-+.                     .   +.       
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            34566777 88999999987554   88999999999999764211                     0   00       


Q ss_pred             Ee-cCCCceeEEEEeecC-cEEEEEeCCeEEEEeCCCC--E---EEEeec----CCceEEEEEcCCCceEEEEcCCCeEE
Q psy9936          47 EM-NVMEEVYDIKWLHLE-TMFAVAQKDWVYIYDNQGI--E---LHCLKV----LNKVTRMEFLPYHFLLATASEEGYLS  115 (315)
Q Consensus        47 ~~-~~~~~v~~~~~~~~~-~~l~~~~~~~i~i~~~~~~--~---~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~  115 (315)
                      .+ .|.+-|+++.|+|.+ .+|.++.|.++.+|.....  .   ...+..    ....+...|+|+++.+++-+..|..+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            11 377889999999999 5555556999999988433  1   122222    24578899999999999999999999


Q ss_pred             EEEccCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc---------------------------
Q psy9936         116 WLDTSIG---KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK---------------------------  165 (315)
Q Consensus       116 ~~d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~---------------------------  165 (315)
                      +|-....   .....+.+|...|..++|+|.|.+|++.+.|.+-|+|-.-..+                           
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9984332   2334467899999999999999999999999777776321000                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy9936         166 --------------------------------------------------------------------------------  165 (315)
Q Consensus       166 --------------------------------------------------------------------------------  165 (315)
                                                                                                      
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence                                                                                            


Q ss_pred             ---------------ceeEeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCCCCCeeEeccCC-CceeEEE
Q psy9936         166 ---------------PLASLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNLEGPLNTFRTRT-PINNLAF  224 (315)
Q Consensus       166 ---------------~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~-~v~~~~~  224 (315)
                                     .++.+.||...|++++.+|+|+++|+++...     .|++|+..+. ...+.+..|+ .|+.++|
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~F  580 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAF  580 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEE
Confidence                           0344557888999999999999999997654     4999999998 7778888888 7999999


Q ss_pred             ccCCe--EEEEcCCEEEecCC--------------------CceeecccccccccCCcchhhhhhhhhHH
Q psy9936         225 SQRGL--LATSRGNIVEFLKP--------------------PEINFEPRRKANKAGGSVQRAKVKKIVRE  272 (315)
Q Consensus       225 s~~g~--~~~~~~~~i~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (315)
                      ||||+  +.++.|.++.+|..                    +..+|+|++.+.++++.|+..+.+.....
T Consensus       581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99995  45667998887754                    67889999999999999998887765544

>KOG2048|consensus

Probab=99.90  E-value=9.4e-21  Score=162.16  Aligned_cols=228  Identities=15%  Similarity=0.222  Sum_probs=179.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      +..|.+++|++.+ .|.+.+.+|.|.-||+.+++....+. ..+.|++++.+|.+..+++++ ||.++.++.....+...
T Consensus        69 drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~  147 (691)
T KOG2048|consen   69 DRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK  147 (691)
T ss_pred             CCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE
Confidence            7889999999554 66777889999999999999988888 556899999999999888885 78777778766655442


Q ss_pred             ---e-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec-----c---CCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936          88 ---K-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS-----A---KKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus        88 ---~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~---~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                         . ..+.+.+++|+|++..+++|+.||.|++||..++..++...     .   ...-|.++.|-.++ .|++|...|+
T Consensus       148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~  226 (691)
T KOG2048|consen  148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT  226 (691)
T ss_pred             eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce
Confidence               2 23889999999999999999999999999999987766221     1   22236777776554 7899999999


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCC---eeEeccCC-CceeEEEccCCeEE
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP---LNTFRTRT-PINNLAFSQRGLLA  231 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~-~v~~~~~s~~g~~~  231 (315)
                      |.+||...+..++.+..|.+.|.+++.++++.++++++.|+.|..|...+....   ......|. .+.+++..++-++.
T Consensus       227 V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~s  306 (691)
T KOG2048|consen  227 VTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALIS  306 (691)
T ss_pred             EEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEe
Confidence            999999999999999999999999999999999999999999988887765221   11112233 47788877764444


Q ss_pred             EEcCCEEE
Q psy9936         232 TSRGNIVE  239 (315)
Q Consensus       232 ~~~~~~i~  239 (315)
                      ++.|.++.
T Consensus       307 gG~d~~l~  314 (691)
T KOG2048|consen  307 GGRDFTLA  314 (691)
T ss_pred             cceeeEEE
Confidence            44455444

>KOG0649|consensus

Probab=99.90  E-value=2.8e-21  Score=146.53  Aligned_cols=228  Identities=17%  Similarity=0.261  Sum_probs=177.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC---------ce-EEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR---------KT-LACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~---------~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~   78 (315)
                      ...|.+-+++|.+++|++|..+|.|.++.+.+         ++ .+...+ |.++++.++|.  ..+|.+++||.|+=|.
T Consensus        10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~   87 (325)
T KOG0649|consen   10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWE   87 (325)
T ss_pred             HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEee
Confidence            45567778999999999999999999998752         22 223323 88999999998  4577788889999886


Q ss_pred             CCC-------CEEEEee--------cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCC
Q psy9936          79 NQG-------IELHCLK--------VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPY  143 (315)
Q Consensus        79 ~~~-------~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~  143 (315)
                      -..       +++....        .-..|+++...|..+-++.++.|+.++-||+++|+..+.+++|...+.++.-...
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            421       1111111        1256899999998777777789999999999999999999999999999988555


Q ss_pred             CCEEEEEcCCCeEEEEcCCCCcceeEeeccc----------ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEe
Q psy9936         144 NACICLGHRNGTVTMWSPTVQKPLASLLCHK----------AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       144 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~  213 (315)
                      ...+++|++||++++||+++++.+..+....          .+|-+++.  +..+|+.|+.. .+.+|+++.. ++...+
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrss-e~t~vf  243 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSS-ESTCVF  243 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCC-CceEEE
Confidence            5578899999999999999999888775321          24555554  45578776554 6999999998 999999


Q ss_pred             ccCCCceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         214 RTRTPINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       214 ~~~~~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +.+.++..+.|..|-.++++.++.+..|..
T Consensus       244 pipa~v~~v~F~~d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  244 PIPARVHLVDFVDDCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             ecccceeEeeeecceEEEeccccceeeeee
Confidence            999999999999887777776777776654

>KOG0307|consensus

Probab=99.89  E-value=7.8e-23  Score=184.19  Aligned_cols=233  Identities=16%  Similarity=0.237  Sum_probs=185.2

Q ss_pred             CCcEEEEEEcCCCCE----EEEEcCCCeEEEEEccC---ce---EEEEec-CCCceeEEEEeec-CcEEEEEe-CCeEEE
Q psy9936          10 QFGIYRMNYTKNGRH----LLLGGKRGHVAAFDWVR---KT---LACEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDWVYI   76 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~----l~~~~~dg~i~v~~~~~---~~---~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~i   76 (315)
                      ....+.++|.+.|..    ||.|..||.|.+||...   +.   .+.... |.+.|..+.|++. +++||+|. +|.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456789999998775    88889999999999765   22   233334 8999999999996 55888886 799999


Q ss_pred             EeCCCCEE-EEe---ecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCC--CeEEEEEcCCCC-EEE
Q psy9936          77 YDNQGIEL-HCL---KVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKG--KLSVMTQNPYNA-CIC  148 (315)
Q Consensus        77 ~~~~~~~~-~~~---~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~p~~~-~l~  148 (315)
                      ||+..-+. ...   .....|.+++|+.. .+.|++++.+|.+.|||++..+++-.+..+.+  .+..++|+|++. .++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            99954221 111   23478999999875 56899999999999999998887777766654  477899999875 555


Q ss_pred             EEcCCC---eEEEEcCCC-CcceeEeecccccEEEEEECCCC-CEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeE
Q psy9936         149 LGHRNG---TVTMWSPTV-QKPLASLLCHKAGIQSVAVNHTG-TYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNL  222 (315)
Q Consensus       149 ~~~~d~---~i~i~d~~~-~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~  222 (315)
                      +++.|.   .|.+||+|. ..+++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.+++ +.+..+.... .+..+
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv  302 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDV  302 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeee
Confidence            555443   799999986 46788889999999999999987 78999999999999999999 8888887754 58999


Q ss_pred             EEccCC--e-EEEEcCCEEEecCC
Q psy9936         223 AFSQRG--L-LATSRGNIVEFLKP  243 (315)
Q Consensus       223 ~~s~~g--~-~~~~~~~~i~~~~~  243 (315)
                      .|+|..  + -+++-+|.|.++..
T Consensus       303 ~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  303 QWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             eecCCCcchhhhheeccceeeeee
Confidence            999976  3 34556888886655

>KOG0270|consensus

Probab=99.89  E-value=3e-21  Score=157.72  Aligned_cols=257  Identities=18%  Similarity=0.213  Sum_probs=181.8

Q ss_pred             EEEEcCCCCEEEEEcCCC-----eEEEEEccCceEEEE--ecCCCceeEEEEee-------cCcEEEEEe-CCeEEEEeC
Q psy9936          15 RMNYTKNGRHLLLGGKRG-----HVAAFDWVRKTLACE--MNVMEEVYDIKWLH-------LETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~--~~~~~~v~~~~~~~-------~~~~l~~~~-~~~i~i~~~   79 (315)
                      .+..-|...+|+++-...     .++||+-........  +-......|+.|..       .|+++|+|. +..|.|||+
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL  209 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL  209 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence            344556666666654332     356666433222111  11234456777753       268999997 889999997


Q ss_pred             CCC----EEEEe-------------------ecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCe
Q psy9936          80 QGI----ELHCL-------------------KVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKL  135 (315)
Q Consensus        80 ~~~----~~~~~-------------------~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  135 (315)
                      .-.    +...+                   .|...|.+++|+.. .+.||+|+.|.+|.+||+.++++...+..|.+.|
T Consensus       210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V  289 (463)
T KOG0270|consen  210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV  289 (463)
T ss_pred             ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCce
Confidence            311    11111                   13355667888775 5789999999999999999999999999999999


Q ss_pred             EEEEEcCC-CCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCC-EEEEeeCCCcEEEEEccCCCCCeeEe
Q psy9936         136 SVMTQNPY-NACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       136 ~~~~~~p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~  213 (315)
                      .++.|+|. ..+|++|+.|++|.+.|.|........-...+.|-.++|.|... .++++..||+++-+|+++.++++.++
T Consensus       290 q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~  369 (463)
T KOG0270|consen  290 QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL  369 (463)
T ss_pred             eEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE
Confidence            99999995 45899999999999999995333222222567899999999865 56677899999999999887999999


Q ss_pred             ccCC-CceeEEEccCC---eEEEEcCCEEEecCC------------------Cceeecccc-cccccCCcchhhhhhhhh
Q psy9936         214 RTRT-PINNLAFSQRG---LLATSRGNIVEFLKP------------------PEINFEPRR-KANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       214 ~~~~-~v~~~~~s~~g---~~~~~~~~~i~~~~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~  270 (315)
                      ..|. +|.++++++.-   +..++.++.+++|+.                  .+.++.|+- -.++.|+.....+.+...
T Consensus       370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence            9887 79999998764   355667999999987                  233444443 345566655555555444


Q ss_pred             H
Q psy9936         271 R  271 (315)
Q Consensus       271 ~  271 (315)
                      .
T Consensus       450 ~  450 (463)
T KOG0270|consen  450 T  450 (463)
T ss_pred             c
Confidence            3

>KOG1538|consensus

Probab=99.88  E-value=1.2e-21  Score=167.64  Aligned_cols=251  Identities=14%  Similarity=0.169  Sum_probs=196.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      ...|..++|-|||..|+.+..+ .+.+||...|..+.++. |.+.|++++|+.||+.+++|+ |..|.+|+..-.-+...
T Consensus        12 ~hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY   90 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY   90 (1081)
T ss_pred             ccchheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence            4478999999999988877544 69999999999999988 999999999999999999986 88999999866666678


Q ss_pred             ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce
Q psy9936          88 KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus        88 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~  167 (315)
                      .|...|.|+.|+|-...|++++.+ ..-+|...... +...+ ...++.+++|+.||++|+.|-.+|+|.+-+-. +++-
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek  166 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK  166 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence            899999999999999999998765 46788765432 22222 34578999999999999999999999998654 4443


Q ss_pred             eEee---cccccEEEEEECCCC-----CEEEEeeCCCcEEEEEccCCCCCee-EeccCCCceeEEEccCCe--EEEEcCC
Q psy9936         168 ASLL---CHKAGIQSVAVNHTG-----TYMATSAGDSQLRIWDVRNLEGPLN-TFRTRTPINNLAFSQRGL--LATSRGN  236 (315)
Q Consensus       168 ~~~~---~~~~~i~~~~~sp~g-----~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~--~~~~~~~  236 (315)
                      ..+.   +..++|++++|+|+.     ..+++.....++.++.+...  .+. .-...-...++.+-++|.  ++.++|+
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccccCCCCchhheeccCCcEEEEccCCC
Confidence            3443   466899999999973     37888888888888888763  333 222333578899999994  4556677


Q ss_pred             EEEecCC---------------CceeecccccccccCCcchhhhhh
Q psy9936         237 IVEFLKP---------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       237 ~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      .++++.-               ++++..|+++..+.|-.++++.--
T Consensus       245 ~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  245 QLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             ceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence            7774432               678889999999988888755443

>KOG0300|consensus

Probab=99.88  E-value=5.4e-21  Score=150.38  Aligned_cols=234  Identities=16%  Similarity=0.201  Sum_probs=187.1

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc------C--------c--------------------------eE
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV------R--------K--------------------------TL   44 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~------~--------~--------------------------~~   44 (315)
                      .+.+ .+.|+++.|++.+.++++++.|++..||...      .        +                          .+
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            3445 7899999999999999999999999999621      0        0                          01


Q ss_pred             EEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE-EEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEcc
Q psy9936          45 ACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE-LHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTS  120 (315)
Q Consensus        45 ~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  120 (315)
                      +..+. |...|.+..|...|+.+++++ |.+..+||++..+ +..+. |....+.++-+|..+++++++.|.+.++||++
T Consensus       265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR  344 (481)
T ss_pred             eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch
Confidence            22233 667788888988888888887 9999999996544 44443 55788888899999999999999999999998


Q ss_pred             CC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcE
Q psy9936         121 IG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQL  198 (315)
Q Consensus       121 ~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i  198 (315)
                      .. ..+..|++|...|+++.|+.+. .+++|+.|.+|++||+++. .++.++. ..++++.++.+..+..+|.--.+..|
T Consensus       345 eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqv  422 (481)
T KOG0300|consen  345 EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQV  422 (481)
T ss_pred             hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceE
Confidence            54 4567799999999999998765 5789999999999999975 5777777 57889999999988899998888899


Q ss_pred             EEEEccCCCCCeeEe-----ccCC-CceeEEEccCC----eEEEEcCCEEEecCC
Q psy9936         199 RIWDVRNLEGPLNTF-----RTRT-PINNLAFSQRG----LLATSRGNIVEFLKP  243 (315)
Q Consensus       199 ~iwd~~~~~~~~~~~-----~~~~-~v~~~~~s~~g----~~~~~~~~~i~~~~~  243 (315)
                      ++||+... . +..+     .+|. -|++++|..+.    ++.++.|..+..|+.
T Consensus       423 RlfDlnG~-R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  423 RLFDLNGN-R-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             EEEecCCC-c-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence            99999864 3 3323     3444 48999998764    567777888888875

>KOG0302|consensus

Probab=99.88  E-value=1.9e-21  Score=155.83  Aligned_cols=194  Identities=15%  Similarity=0.281  Sum_probs=148.1

Q ss_pred             CCCceeEEEEeecCcEEEEE--e-CCeEEEEeCCC-----------------CEEEEee-cCCceEEEEEcCC-CceEEE
Q psy9936          50 VMEEVYDIKWLHLETMFAVA--Q-KDWVYIYDNQG-----------------IELHCLK-VLNKVTRMEFLPY-HFLLAT  107 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~--~-~~~i~i~~~~~-----------------~~~~~~~-~~~~v~~~~~~~~-~~~l~~  107 (315)
                      |.+.++.+.-++-++-.+++  + .|.|+||++..                 .++..+. |...-+.++|||- ...|++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            55667777766654333332  3 68999999731                 1122222 3456688999994 235778


Q ss_pred             EcCCCeEEEEEccCCeEE---EEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCCc--ceeEeecccccEEEEE
Q psy9936         108 ASEEGYLSWLDTSIGKIV---SDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQK--PLASLLCHKAGIQSVA  181 (315)
Q Consensus       108 ~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~  181 (315)
                      |..-+.|++|...+|.-.   ..+.+|...|-.++|||..+ .|++|+.||+|+|||+|++.  .-...+.|.+.|+.|+
T Consensus       230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVIS  309 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVIS  309 (440)
T ss_pred             CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEE
Confidence            877788999999887532   34667999999999999654 89999999999999999872  2223378999999999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEEccCC--CCCeeEeccCC-CceeEEEccCC--eEE-EEcCCEEEecCC
Q psy9936         182 VNHTGTYMATSAGDSQLRIWDVRNL--EGPLNTFRTRT-PINNLAFSQRG--LLA-TSRGNIVEFLKP  243 (315)
Q Consensus       182 ~sp~g~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~-~v~~~~~s~~g--~~~-~~~~~~i~~~~~  243 (315)
                      |+..-.+||+|+.||+++|||++..  ++++..++.|. +|+++.|+|..  .++ ++.|+.|.+|+.
T Consensus       310 Wnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  310 WNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             ccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            9999889999999999999999854  37888898886 79999999965  444 456899999984

>KOG0290|consensus

Probab=99.88  E-value=2.8e-20  Score=144.59  Aligned_cols=240  Identities=17%  Similarity=0.283  Sum_probs=179.2

Q ss_pred             ccEEEeeCCCcEEEEEEcC--CC-CEEEEEcC----CCeEEEEEc--cCceEEE--EecCCCceeEEEEeecCc----EE
Q psy9936           2 TKQFDLDLQFGIYRMNYTK--NG-RHLLLGGK----RGHVAAFDW--VRKTLAC--EMNVMEEVYDIKWLHLET----MF   66 (315)
Q Consensus         2 ~~~~~~~~~~~v~~~~~s~--~~-~~l~~~~~----dg~i~v~~~--~~~~~~~--~~~~~~~v~~~~~~~~~~----~l   66 (315)
                      .+++....+.+++++.||.  +. -+||.|+.    ...|.|..+  ++++.+.  .+.|.-+++.+.|.|+..    -|
T Consensus        36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl  115 (364)
T KOG0290|consen   36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL  115 (364)
T ss_pred             ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence            3577777788999999994  32 37888864    355666644  4555443  356888999999999752    24


Q ss_pred             EEEeCCeEEEEeCC--CCEEEE---e------ecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCe---EEEEeccC
Q psy9936          67 AVAQKDWVYIYDNQ--GIELHC---L------KVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGK---IVSDFSAK  131 (315)
Q Consensus        67 ~~~~~~~i~i~~~~--~~~~~~---~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~  131 (315)
                      ..+++..+++|.+.  ...+..   +      .+..++++..|+. +-+++.+++-|.+..|||+.++.   ....+..|
T Consensus       116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH  195 (364)
T KOG0290|consen  116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH  195 (364)
T ss_pred             hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence            44456789999984  222211   1      1237889999987 46789999999999999999863   35567789


Q ss_pred             CCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCCc---------------------------------------------
Q psy9936         132 KGKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQK---------------------------------------------  165 (315)
Q Consensus       132 ~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~~---------------------------------------------  165 (315)
                      ...|..++|...+. .||+.+.||.+++||+|..+                                             
T Consensus       196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence            99999999998664 88999999999999987532                                             


Q ss_pred             ---ceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCC-----CCCeeEeccCCCceeEEEccCC--eEEEEc
Q psy9936         166 ---PLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNL-----EGPLNTFRTRTPINNLAFSQRG--LLATSR  234 (315)
Q Consensus       166 ---~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~g--~~~~~~  234 (315)
                         ++..+++|.+.|+.++|.|. ..+|++++.|..+-+||+...     ..++..+.....|+.+.|+|..  -+..+.
T Consensus       276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence               25667789999999999997 569999999999999999754     2345555556679999999754  355556


Q ss_pred             CCEEEec
Q psy9936         235 GNIVEFL  241 (315)
Q Consensus       235 ~~~i~~~  241 (315)
                      ++++.+.
T Consensus       356 ~kkleiL  362 (364)
T KOG0290|consen  356 GKKLEIL  362 (364)
T ss_pred             cCeeeEE
Confidence            6666543

>KOG2096|consensus

Probab=99.88  E-value=4.5e-20  Score=145.20  Aligned_cols=230  Identities=12%  Similarity=0.174  Sum_probs=171.6

Q ss_pred             CcEEEEEEcCCCCEEEEE-cCCCeEEEEEccC---ceEEEE--------ec--CCCceeEEEEeecCcEEEEEe-CCeEE
Q psy9936          11 FGIYRMNYTKNGRHLLLG-GKRGHVAAFDWVR---KTLACE--------MN--VMEEVYDIKWLHLETMFAVAQ-KDWVY   75 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~---~~~~~~--------~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~   75 (315)
                      +..+.++|+||.+.+++. ....++++|.+..   |.....        +.  |.-.+..+-...++.+|++++ |..|.
T Consensus       133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~  212 (420)
T KOG2096|consen  133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC  212 (420)
T ss_pred             CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence            467899999999866554 4455799997642   221111        11  344566666777888998887 78999


Q ss_pred             EEeCCCCEEEEeecC-CceEEEEEcCCCceEEEEcCCCeEEEEEcc---CC-----eEEEEeccCCCCeEEEEEcCCCCE
Q psy9936          76 IYDNQGIELHCLKVL-NKVTRMEFLPYHFLLATASEEGYLSWLDTS---IG-----KIVSDFSAKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        76 i~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~---~~-----~~~~~~~~~~~~v~~~~~~p~~~~  146 (315)
                      +|++.|+.+..+... ..-+..+.||+|+++++++-.--|++|.+-   .|     ..+..+.+|...|..++|+|+...
T Consensus       213 lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r  292 (420)
T KOG2096|consen  213 LWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR  292 (420)
T ss_pred             EEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence            999999887776544 455678899999999999988889999863   23     345678899999999999999999


Q ss_pred             EEEEcCCCeEEEEcCCC-------CcceeEee----cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec-
Q psy9936         147 ICLGHRNGTVTMWSPTV-------QKPLASLL----CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR-  214 (315)
Q Consensus       147 l~~~~~d~~i~i~d~~~-------~~~~~~~~----~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~-  214 (315)
                      +++.+.||++++||++-       .+.+++..    ...+....++++|+|..||.+.. ..++++..+++ +.+..++ 
T Consensus       293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g-~~~~~~e~  370 (420)
T KOG2096|consen  293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDG-KDYPELED  370 (420)
T ss_pred             eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccC-ccchhHHH
Confidence            99999999999999752       22233321    22344458999999998887654 36999999988 6666554 


Q ss_pred             cCC-CceeEEEccCCeEEEE-cCCEEEecC
Q psy9936         215 TRT-PINNLAFSQRGLLATS-RGNIVEFLK  242 (315)
Q Consensus       215 ~~~-~v~~~~~s~~g~~~~~-~~~~i~~~~  242 (315)
                      .|. .|.+++|+++|+++++ +|..++++.
T Consensus       371 ~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            344 5999999999987665 566777644

>KOG4283|consensus

Probab=99.87  E-value=9.2e-21  Score=147.54  Aligned_cols=194  Identities=16%  Similarity=0.230  Sum_probs=154.0

Q ss_pred             cCCCceeEEEEee-cCcEEEEEe-CCeEEEEeCCCCE-------------EEEee----cCCceEEEEEcC-CCceEEEE
Q psy9936          49 NVMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDNQGIE-------------LHCLK----VLNKVTRMEFLP-YHFLLATA  108 (315)
Q Consensus        49 ~~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~-------------~~~~~----~~~~v~~~~~~~-~~~~l~~~  108 (315)
                      .|.+.|+++...+ .|+++++|+ ||.|-+||++...             +....    |...|.++.|-| |..+|.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            3778899999888 478888775 9999999984321             10111    336789999999 45688899


Q ss_pred             cCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCC
Q psy9936         109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN---ACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHT  185 (315)
Q Consensus       109 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~  185 (315)
                      +-|.++++||..+.+....|. -++.|++-+++|-.   -++|+|..+-.|++-|+.+|..-+.+.+|...|..+.|+|.
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            999999999999988877776 45678888888843   37788888999999999999999999999999999999999


Q ss_pred             CC-EEEEeeCCCcEEEEEccCCCCCeeEeccC--------------C-CceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         186 GT-YMATSAGDSQLRIWDVRNLEGPLNTFRTR--------------T-PINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       186 g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~-~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                      .. .|++|+.||.|++||++....++..+..|              . .+.+++|+.+|++  +.+.|+.++.|+.
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            77 47899999999999998653444433322              2 3789999999964  4556889998876

>KOG0303|consensus

Probab=99.87  E-value=6.3e-20  Score=148.06  Aligned_cols=222  Identities=14%  Similarity=0.225  Sum_probs=167.4

Q ss_pred             CCCEEEEE---cCCCeEEEEEc-cCceEEEEe----cCCCceeEEEEee-cCcEEEEEe-CCeEEEEeC-CC-------C
Q psy9936          21 NGRHLLLG---GKRGHVAAFDW-VRKTLACEM----NVMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDN-QG-------I   82 (315)
Q Consensus        21 ~~~~l~~~---~~dg~i~v~~~-~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~-~~-------~   82 (315)
                      +.++||+.   +..|...|.-+ ++|+.-...    .|.++|..+.|+| +...||+|+ |.+|.||.+ ++       .
T Consensus        43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte  122 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE  122 (472)
T ss_pred             CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence            34555542   23344444433 344433322    2889999999999 566777777 779999998 22       1


Q ss_pred             EEEE-eecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          83 ELHC-LKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        83 ~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      .+.. ..|...|.-++|+|. .+.|++++.|.+|.+||+.+|+.+.++. |...|.++.|+.||.+|++.+.|..|+|||
T Consensus       123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~d  201 (472)
T KOG0303|consen  123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVID  201 (472)
T ss_pred             ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence            2222 456688999999997 5789999999999999999999888887 999999999999999999999999999999


Q ss_pred             CCCCcceeEeecccc-cEEEEEECCCCCEEEEe---eCCCcEEEEEccCCCCCeeE--eccCCCceeEEEccCC--eEEE
Q psy9936         161 PTVQKPLASLLCHKA-GIQSVAVNHTGTYMATS---AGDSQLRIWDVRNLEGPLNT--FRTRTPINNLAFSQRG--LLAT  232 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~-~i~~~~~sp~g~~l~~~---~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g--~~~~  232 (315)
                      .++++.+..-.+|.+ ....+.|-.+|..+-||   ..+..+-+||..+.+.++..  +....+|.-.-|+||.  .|++
T Consensus       202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~  281 (472)
T KOG0303|consen  202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC  281 (472)
T ss_pred             CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE
Confidence            999999988878875 44567788888855454   25668999999887566544  3444578888888887  4566


Q ss_pred             E-cCCEEEecCC
Q psy9936         233 S-RGNIVEFLKP  243 (315)
Q Consensus       233 ~-~~~~i~~~~~  243 (315)
                      + +|+.|+-+..
T Consensus       282 GKGD~~IRYyEi  293 (472)
T KOG0303|consen  282 GKGDSSIRYFEI  293 (472)
T ss_pred             ecCCcceEEEEe
Confidence            5 7999995543

>KOG1524|consensus

Probab=99.86  E-value=1.1e-20  Score=158.07  Aligned_cols=248  Identities=13%  Similarity=0.163  Sum_probs=185.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEE-ee--------cCcEEEEEeCCeEEEEeC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKW-LH--------LETMFAVAQKDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~-~~--------~~~~l~~~~~~~i~i~~~   79 (315)
                      ..-+.|+.|+.+...+.++ .|..+.+|.-.+........ ...-+....+ -+        ...++++++||.+.+.+-
T Consensus        14 ~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k   92 (737)
T KOG1524|consen   14 SEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNK   92 (737)
T ss_pred             ceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecc
Confidence            3456788998877666554 56666666543333222222 1111111111 11        124667778999999987


Q ss_pred             CCCEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          80 QGIELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        80 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      .++.-..+ .|.+.+.+-.|+|+|.-|+++++||.|++|. ++|....++.....+|.|++|.|+.+-++.+. .+.+.|
T Consensus        93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~I  170 (737)
T KOG1524|consen   93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISI  170 (737)
T ss_pred             cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEE
Confidence            66544444 4668899999999999999999999999998 55655555555677899999999988666553 356777


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCCeEEEEcCCE
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRGLLATSRGNI  237 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~~~~~  237 (315)
                      =-+.....+-.++.|.+-|.++.|+|....+++|+.|-..+|||...  .++..-..| .+|++++|.|+..++++.-++
T Consensus       171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G--~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt  248 (737)
T KOG1524|consen  171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG--ANLFTSAAEEYAITSVAFNPEKDYLLWSYNT  248 (737)
T ss_pred             eecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC--cccccCChhccceeeeeeccccceeeeeeee
Confidence            77776666778899999999999999999999999999999999876  455544444 489999999998889888899


Q ss_pred             EEecCC-----CceeecccccccccCCcch
Q psy9936         238 VEFLKP-----PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       238 i~~~~~-----~~~~~~~~~~~~~~~~~~~  262 (315)
                      ++.-.|     ..++|||||..++.|...+
T Consensus       249 ~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  249 ARFSSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeecCCCccceEEEEEcCCCceeeccccCc
Confidence            997777     6799999999998776554

>KOG1007|consensus

Probab=99.86  E-value=6.6e-20  Score=142.40  Aligned_cols=194  Identities=13%  Similarity=0.162  Sum_probs=149.2

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCC-------CeEEEEEccCce---------EEEEec--CCCceeEEEEeecCcEEEEEe
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKR-------GHVAAFDWVRKT---------LACEMN--VMEEVYDIKWLHLETMFAVAQ   70 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~d-------g~i~v~~~~~~~---------~~~~~~--~~~~v~~~~~~~~~~~l~~~~   70 (315)
                      .+.|..++-+|-.+ .|+++..+       ..+.||.+....         .+..+.  +-+.+.|+.|.|++..+++-.
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~  142 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD  142 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence            46788888888554 55554331       247799875322         222333  445799999999999999989


Q ss_pred             CCeEEEEeCC-CCE-EEEee------cCCceEEEEEcC--CCceEEEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEE
Q psy9936          71 KDWVYIYDNQ-GIE-LHCLK------VLNKVTRMEFLP--YHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMT  139 (315)
Q Consensus        71 ~~~i~i~~~~-~~~-~~~~~------~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~  139 (315)
                      +..|.+|+++ +.. ...+.      +....++-+|+|  +++.+++.+ |+++..||+++.+....+. .|...+..+.
T Consensus       143 dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD  221 (370)
T KOG1007|consen  143 DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLD  221 (370)
T ss_pred             cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeecc
Confidence            9999999994 333 22221      234567888998  577777664 7899999999887666654 6888899999


Q ss_pred             EcCCCC-EEEEEcCCCeEEEEcCCC-CcceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEcc
Q psy9936         140 QNPYNA-CICLGHRNGTVTMWSPTV-QKPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       140 ~~p~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~  204 (315)
                      |+|+.+ +|++|+.||.|++||.|. ..++.++.+|..+|+++.|+|. .+++++|+.|..|.+|...
T Consensus       222 fNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  222 FNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             CCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            999877 788999999999999986 4689999999999999999997 5578899999999999764

>KOG4328|consensus

Probab=99.86  E-value=1.8e-20  Score=153.71  Aligned_cols=220  Identities=20%  Similarity=0.271  Sum_probs=164.6

Q ss_pred             eEEEEec-CCCceeEEEEeecC--cEEEEEe-CCeEEEEeCCCC------EEEEeecCCceEEEEEcCCC-ceEEEEcCC
Q psy9936          43 TLACEMN-VMEEVYDIKWLHLE--TMFAVAQ-KDWVYIYDNQGI------ELHCLKVLNKVTRMEFLPYH-FLLATASEE  111 (315)
Q Consensus        43 ~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~-~~~i~i~~~~~~------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  111 (315)
                      .....+. +.++|++++|+|..  +++++|. .|+|-+||+.++      ...-..|..+|.++.|+|.. ..+++.+.|
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            3334444 67899999999964  5666665 689999999421      12223466899999999964 689999999


Q ss_pred             CeEEEEEccCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc-eeEeecccccEEEEEECCCCC-
Q psy9936         112 GYLSWLDTSIGKI--VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP-LASLLCHKAGIQSVAVNHTGT-  187 (315)
Q Consensus       112 ~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~sp~g~-  187 (315)
                      |+|++-|+..+..  +..+......+..+.|+.+...++.+..=|.+.+||++++.. ...+.-|...|++++++|-.. 
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            9999999986632  333333445678888988888777887777999999998654 666677889999999999854 


Q ss_pred             EEEEeeCCCcEEEEEccCCC--C-C-eeEeccCCCceeEEEccCC--eEEEEcCCEEEecCC------------------
Q psy9936         188 YMATSAGDSQLRIWDVRNLE--G-P-LNTFRTRTPINNLAFSQRG--LLATSRGNIVEFLKP------------------  243 (315)
Q Consensus       188 ~l~~~~~d~~i~iwd~~~~~--~-~-~~~~~~~~~v~~~~~s~~g--~~~~~~~~~i~~~~~------------------  243 (315)
                      +|||+|.|++.+|||++...  . + +..+.....|.++.|||+|  ++..+.|+.|++|+.                  
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~  416 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNR  416 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCc
Confidence            78999999999999998651  1 2 3333444479999999987  344556999997765                  


Q ss_pred             -------CceeecccccccccCCcch
Q psy9936         244 -------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       244 -------~~~~~~~~~~~~~~~~~~~  262 (315)
                             ....|.|+-.+++.|...+
T Consensus       417 t~RwlT~fKA~W~P~~~li~vg~~~r  442 (498)
T KOG4328|consen  417 TGRWLTPFKAAWDPDYNLIVVGRYPR  442 (498)
T ss_pred             ccccccchhheeCCCccEEEEeccCc
Confidence                   4566788877777776554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=3.5e-18  Score=145.38  Aligned_cols=232  Identities=13%  Similarity=0.103  Sum_probs=159.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEc-CCCeEEEEEcc-CceE--EEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGG-KRGHVAAFDWV-RKTL--ACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-I   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~   82 (315)
                      .+.+..++++|++++|++++ .++.|.+|+++ ++..  ............++|+|++++++++.  ++.|.+|+++. .
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            45677899999999887654 57889999986 3433  22333444567899999999888876  78999999852 1


Q ss_pred             ----EEEEeecCCceEEEEEcCCCceEEEEc-CCCeEEEEEccCCeEEE-------EeccCCCCeEEEEEcCCCCEEEEE
Q psy9936          83 ----ELHCLKVLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTSIGKIVS-------DFSAKKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        83 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~l~~~  150 (315)
                          .+..+.......+++++|+++++++++ .++.|.+||+.+...+.       .... ......++|+|+|++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~  192 (330)
T PRK11028        114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCV  192 (330)
T ss_pred             CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEE
Confidence                222233334567889999998886554 56899999997632221       1111 2346789999999999888


Q ss_pred             cC-CCeEEEEcCCC--Cc--ceeEeecc------cccEEEEEECCCCCEEEEeeC-CCcEEEEEccCCCCC---eeEecc
Q psy9936         151 HR-NGTVTMWSPTV--QK--PLASLLCH------KAGIQSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGP---LNTFRT  215 (315)
Q Consensus       151 ~~-d~~i~i~d~~~--~~--~~~~~~~~------~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~~---~~~~~~  215 (315)
                      +. ++.|.+||++.  ++  .+..+..+      ......+.++|+|++|+++.. ++.|.+|++......   +..+..
T Consensus       193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~  272 (330)
T PRK11028        193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT  272 (330)
T ss_pred             ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence            76 89999999973  22  23333221      122346889999999988854 788999999654122   223333


Q ss_pred             CCCceeEEEccCCe--EEEEc-CCEEEecC
Q psy9936         216 RTPINNLAFSQRGL--LATSR-GNIVEFLK  242 (315)
Q Consensus       216 ~~~v~~~~~s~~g~--~~~~~-~~~i~~~~  242 (315)
                      ......+.|+|||.  +++.. +++|.+|+
T Consensus       273 ~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        273 ETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            33567899999994  33332 77888876

>KOG1009|consensus

Probab=99.85  E-value=1.6e-19  Score=146.11  Aligned_cols=153  Identities=12%  Similarity=0.185  Sum_probs=125.8

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCce---------EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEE
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKT---------LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIY   77 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~---------~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~   77 (315)
                      +.+|..+.|.+++. .+++|+.|..|++|-+..+.         ....+. |...|+.+.|+|+|.+||+|. +|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            78999999999887 99999999999999775332         223344 888999999999999999998 5799999


Q ss_pred             eCC--------C-----CEE-----EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEE
Q psy9936          78 DNQ--------G-----IEL-----HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMT  139 (315)
Q Consensus        78 ~~~--------~-----~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  139 (315)
                      ...        +     ++.     ....|...+..++|+|++.++++++.|.++++||+..|+....+..|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            754        2     111     1123558899999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEcCCCeEEEEcCC
Q psy9936         140 QNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus       140 ~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      |.|-++++++-+.|...+.+.+.
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             cchhhhhhhhhccCcccceeeee
Confidence            99988888887777655555543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=3.2e-19  Score=156.47  Aligned_cols=211  Identities=10%  Similarity=0.002  Sum_probs=149.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCe--EEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDW--VYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~--i~i~~~~~~   82 (315)
                      ...+.+.+|||||+.|+..+.+   ..|++||+.+++........+....++|+|||+.|+.+.  +|.  |++||+.+.
T Consensus       203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG  282 (429)
T ss_pred             CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence            4568999999999999887643   479999998876543333334455789999999888764  564  555677655


Q ss_pred             EEEEee-cCCceEEEEEcCCCceEEEEc-CCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          83 ELHCLK-VLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        83 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ....+. +...+..+.|+|||+.|+.++ .++...+|++... .....+ .+..  ....|+|+|++|+.++.++ +.+|
T Consensus       283 ~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~  358 (429)
T PRK01742        283 TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQ  358 (429)
T ss_pred             CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEE
Confidence            555544 335678899999999776654 5677888876532 222233 3333  4578999999998887765 5569


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc--CCCCCeeEeccCC-CceeEEEccC
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR--NLEGPLNTFRTRT-PINNLAFSQR  227 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~-~v~~~~~s~~  227 (315)
                      |+.+++.......+  ....+.|+|||++|++++.++.+.+|.+.  ++ .....+..+. .+..++|+|-
T Consensus       359 Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        359 DLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCCCCCCcccCCC
Confidence            99888654322222  33568899999999999999988888763  44 6777777655 4788999984

>KOG1538|consensus

Probab=99.85  E-value=6.6e-20  Score=157.12  Aligned_cols=234  Identities=11%  Similarity=0.113  Sum_probs=185.3

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCE
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIE   83 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~   83 (315)
                      ..++. .+.|+|++|+.||+.+|+|+.|..|.+|+. ..+-+..+.|.+.|.|+.|+|-...|++++=...-+|..+.+.
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~-klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~  125 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS-KLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS  125 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEecc-cccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence            34566 789999999999999999999999999984 3344556779999999999999999998887778899887666


Q ss_pred             EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec---cCCCCeEEEEEcCCC-----CEEEEEcCCCe
Q psy9936          84 LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS---AKKGKLSVMTQNPYN-----ACICLGHRNGT  155 (315)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~p~~-----~~l~~~~~d~~  155 (315)
                      +...+....+.+++|..||.+++.|-.+|+|.+-+- +++....+.   +..++|.+++|+|..     ..+++.....+
T Consensus       126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence            555555678999999999999999999999999874 354433333   466789999999954     37888888899


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-CCCceeEEEccCCe--EEE
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-RTPINNLAFSQRGL--LAT  232 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~--~~~  232 (315)
                      +.+|.+. |+.+..-+...-...|+++.|+|.|+..|+.|+.+++|.-..  -.+.++.. +..|+.++..|++.  .+.
T Consensus       205 LSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G--vrLGTvg~~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  205 LSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG--VRLGTVGEQDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             eEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC--eEEeeccccceeEEEEEEccCCceEEEE
Confidence            9999887 555544343445567999999999999999999999996544  45555543 34699999999995  344


Q ss_pred             EcCCEEEecCC
Q psy9936         233 SRGNIVEFLKP  243 (315)
Q Consensus       233 ~~~~~i~~~~~  243 (315)
                      +.||+|--++.
T Consensus       282 CqDGTiACyNl  292 (1081)
T KOG1538|consen  282 CQDGTIACYNL  292 (1081)
T ss_pred             EccCeeehhhh
Confidence            56999986654

>KOG0321|consensus

Probab=99.85  E-value=9.4e-20  Score=155.18  Aligned_cols=258  Identities=14%  Similarity=0.240  Sum_probs=178.5

Q ss_pred             EEEEEcC---CCCEEEEEcCCCeEEEEEccCceEE-------EEecCCCceeEEEEeecCcEEEEE-eCCeEEEEeCCCC
Q psy9936          14 YRMNYTK---NGRHLLLGGKRGHVAAFDWVRKTLA-------CEMNVMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQGI   82 (315)
Q Consensus        14 ~~~~~s~---~~~~l~~~~~dg~i~v~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~~   82 (315)
                      .+..|++   ....|+.+..+|.|.++|.......       .-+-|...|.++.|.|....|+++ +|.++++||+.+.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            4566765   2347888999999999997654322       223388999999999955555555 4889999999654


Q ss_pred             EE----EEeecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCe--------------------E-------EEEecc
Q psy9936          83 EL----HCLKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGK--------------------I-------VSDFSA  130 (315)
Q Consensus        83 ~~----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~--------------------~-------~~~~~~  130 (315)
                      .+    ..+.|...|.+++|.|.. ..|++|+.||.|.|||++...                    +       +..-..
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            43    346788999999999975 688999999999999987421                    0       011112


Q ss_pred             CCCCeEE---EEEcCCCCEEEEEcC-CCeEEEEcCCCCccee--------Eeecc---cccEEEEEECCCCCEEEEeeCC
Q psy9936         131 KKGKLSV---MTQNPYNACICLGHR-NGTVTMWSPTVQKPLA--------SLLCH---KAGIQSVAVNHTGTYMATSAGD  195 (315)
Q Consensus       131 ~~~~v~~---~~~~p~~~~l~~~~~-d~~i~i~d~~~~~~~~--------~~~~~---~~~i~~~~~sp~g~~l~~~~~d  195 (315)
                      +...|.+   +.+..|...||+++. |+.|+|||++......        .+..|   .-.+.++.....|.+|.+.+.|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            3333444   445578889999887 9999999999754322        22223   2367788888889999998899


Q ss_pred             CcEEEEEccCCC-CCeeEeccCCC---ceeEEEccCCeEEEE--cCCEEEecCC-----------------Cceeecccc
Q psy9936         196 SQLRIWDVRNLE-GPLNTFRTRTP---INNLAFSQRGLLATS--RGNIVEFLKP-----------------PEINFEPRR  252 (315)
Q Consensus       196 ~~i~iwd~~~~~-~~~~~~~~~~~---v~~~~~s~~g~~~~~--~~~~i~~~~~-----------------~~~~~~~~~  252 (315)
                      ++|++|++.... .++..+.++..   -..-..+||+.++++  .|....+|.+                 ++++|.|..
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            999999998752 34444444321   123356788865554  4777777755                 678887643


Q ss_pred             -cccccCCcchhhhhhhhhH
Q psy9936         253 -KANKAGGSVQRAKVKKIVR  271 (315)
Q Consensus       253 -~~~~~~~~~~~~~~~~~~~  271 (315)
                       ..+++++.|.+.+.+....
T Consensus       373 ~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  373 TTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             CCCceeeccCcceEEEeccC
Confidence             4556668888777776643

>KOG0321|consensus

Probab=99.85  E-value=1.6e-19  Score=153.82  Aligned_cols=234  Identities=10%  Similarity=0.136  Sum_probs=173.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE---ecCCCceeEEEEeecCc-EEEEEe-CCeEEEEeCCCCE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE---MNVMEEVYDIKWLHLET-MFAVAQ-KDWVYIYDNQGIE-   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~-   83 (315)
                      .+.|..+.|.|....|++++.|.++++||+.+.++...   +.|...|.+++|.|... .|++|+ ||.|.|||+.-.. 
T Consensus       100 ~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~  179 (720)
T KOG0321|consen  100 KNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV  179 (720)
T ss_pred             cceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence            67899999999666889999999999999998887655   45999999999999654 455555 9999999972110 


Q ss_pred             --------------------EEE--------eecCCceEE---EEEcCCCceEEEEcC-CCeEEEEEccCCeEEEE----
Q psy9936          84 --------------------LHC--------LKVLNKVTR---MEFLPYHFLLATASE-EGYLSWLDTSIGKIVSD----  127 (315)
Q Consensus        84 --------------------~~~--------~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~----  127 (315)
                                          ...        ..+...|.+   +.+..|...||+++. |+.|+|||++.......    
T Consensus       180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~  259 (720)
T KOG0321|consen  180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR  259 (720)
T ss_pred             hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC
Confidence                                000        011233444   556667788888887 99999999987543222    


Q ss_pred             ----eccC---CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC--cceeEeecccccE--EEEEECCCCCEEEEeeCCC
Q psy9936         128 ----FSAK---KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ--KPLASLLCHKAGI--QSVAVNHTGTYMATSAGDS  196 (315)
Q Consensus       128 ----~~~~---~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i--~~~~~sp~g~~l~~~~~d~  196 (315)
                          +..|   .-.+.++.....|.+|++.+.|+.|.+|++.+.  .++..+.++...-  ..-..+|++.+|++|+.|.
T Consensus       260 ~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~  339 (720)
T KOG0321|consen  260 GSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE  339 (720)
T ss_pred             cccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCc
Confidence                1122   224677888888898888888999999999864  3455555443211  1235689999999999999


Q ss_pred             cEEEEEccCCCCCeeEeccCC-CceeEEEccCC---eEEEEcCCEEEecCC
Q psy9936         197 QLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG---LLATSRGNIVEFLKP  243 (315)
Q Consensus       197 ~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g---~~~~~~~~~i~~~~~  243 (315)
                      ..++|.+.+.+.+...+.+|. .|++++|.|..   .+.++.|..+++|+.
T Consensus       340 ~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  340 QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            999999998867777777777 69999999865   355567889999986

>KOG2110|consensus

Probab=99.84  E-value=2.8e-18  Score=137.58  Aligned_cols=234  Identities=16%  Similarity=0.237  Sum_probs=173.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe--C-CeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ--K-DWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~-~~i~i~~~~~~~~~   85 (315)
                      ...+..+.|+.+...|..|+.+| .++|+.+......... ....|-.+-|+.  .++|..+  + ..+++++.......
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            44667778999999999999998 7788766543311111 112344444543  4555443  2 46888888554443


Q ss_pred             -EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc---CCCCeEEEEEcCCCCEEEEEc--CCCeEEEE
Q psy9936          86 -CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA---KKGKLSVMTQNPYNACICLGH--RNGTVTMW  159 (315)
Q Consensus        86 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~--~d~~i~i~  159 (315)
                       .+....+|.++.++.+  .|+++-.+ .|+|||+++.+.++++..   +...+.++++++.+.+++.-+  ..|.|.+|
T Consensus        82 Ce~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   82 CEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence             3566688999998754  45555444 499999999999988764   344566666666777888643  36899999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCc-EEEEEccCCCCCeeEeccCC---CceeEEEccCCeEEEE--
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ-LRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGLLATS--  233 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~--  233 (315)
                      |+.+-+++..+..|.+++.+++|+|+|.+|||+|..|+ |||+.+.++ +.+.+++-..   .|.+++|+|++.++++  
T Consensus       159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS  237 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAASS  237 (391)
T ss_pred             EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence            99999999999999999999999999999999999997 899999999 8888887554   5899999999965543  


Q ss_pred             cCCEEEecCCCceeecc
Q psy9936         234 RGNIVEFLKPPEINFEP  250 (315)
Q Consensus       234 ~~~~i~~~~~~~~~~~~  250 (315)
                      ..++|++++.....-.+
T Consensus       238 ~TeTVHiFKL~~~~~~~  254 (391)
T KOG2110|consen  238 NTETVHIFKLEKVSNNP  254 (391)
T ss_pred             CCCeEEEEEecccccCC
Confidence            46799999875554333

>KOG4378|consensus

Probab=99.84  E-value=8.4e-20  Score=151.40  Aligned_cols=231  Identities=10%  Similarity=0.184  Sum_probs=176.5

Q ss_pred             CCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEE--eCCeEEEEeCCCC--EEEEee--cCCceEEEEEcCC
Q psy9936          31 RGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVA--QKDWVYIYDNQGI--ELHCLK--VLNKVTRMEFLPY  101 (315)
Q Consensus        31 dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~~~i~i~~~~~~--~~~~~~--~~~~v~~~~~~~~  101 (315)
                      ...+++||.........+.   ....+.++.|.....+++..  .|..+.+|.-.++  ++..+.  ....-.|++....
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~   90 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ   90 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc
Confidence            3469999987665444433   23458999998876644333  2678999987554  122221  2234456665556


Q ss_pred             CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc-cccEEEE
Q psy9936         102 HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH-KAGIQSV  180 (315)
Q Consensus       102 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~  180 (315)
                      ..++++|+..+.|+|||++.....+.++.|...|++|.++-...+||+++..|.|.|..+.++..-.+|... ...|.-+
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll  170 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL  170 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence            689999999999999999966666778899999999999999999999999999999999998777777633 3455688


Q ss_pred             EECCCCC-EEEEeeCCCcEEEEEccCCCCCeeEe-ccCC-CceeEEEccCC-e--EEEEcCCEEEecCC-----------
Q psy9936         181 AVNHTGT-YMATSAGDSQLRIWDVRNLEGPLNTF-RTRT-PINNLAFSQRG-L--LATSRGNIVEFLKP-----------  243 (315)
Q Consensus       181 ~~sp~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~-~v~~~~~s~~g-~--~~~~~~~~i~~~~~-----------  243 (315)
                      .++|..+ +|.+++.+|.|.+||+... .++..+ ..|. |...++|+|.. .  +.++.|..|.+++.           
T Consensus       171 ~ys~skr~lL~~asd~G~VtlwDv~g~-sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y  249 (673)
T KOG4378|consen  171 RYSPSKRFLLSIASDKGAVTLWDVQGM-SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY  249 (673)
T ss_pred             ecccccceeeEeeccCCeEEEEeccCC-CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee
Confidence            9999877 5667899999999999988 666655 4555 78999999987 3  34456999998776           


Q ss_pred             ----CceeecccccccccCCcch
Q psy9936         244 ----PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       244 ----~~~~~~~~~~~~~~~~~~~  262 (315)
                          ..++|+++|.+|+.|..-+
T Consensus       250 ~~Plstvaf~~~G~~L~aG~s~G  272 (673)
T KOG4378|consen  250 SHPLSTVAFSECGTYLCAGNSKG  272 (673)
T ss_pred             cCCcceeeecCCceEEEeecCCc
Confidence                7899999999999998765

>KOG0307|consensus

Probab=99.84  E-value=4e-20  Score=166.95  Aligned_cols=197  Identities=13%  Similarity=0.192  Sum_probs=162.0

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCCC-
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQGI-   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~~-   82 (315)
                      ++.|..+.|++.+. .||+|+.+|.|.|||+...+.-..+.   ..+.|.+++|+.. ..+|++++ +|.+.|||+..+ 
T Consensus       116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~  195 (1049)
T KOG0307|consen  116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK  195 (1049)
T ss_pred             CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence            78999999999765 99999999999999998765444442   4567999999985 56677776 679999999654 


Q ss_pred             EEEEeecC---CceEEEEEcCCC-ceEEEEcCCC---eEEEEEccCC-eEEEEeccCCCCeEEEEEcCCC-CEEEEEcCC
Q psy9936          83 ELHCLKVL---NKVTRMEFLPYH-FLLATASEEG---YLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYN-ACICLGHRN  153 (315)
Q Consensus        83 ~~~~~~~~---~~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d  153 (315)
                      .+..+...   ..+..++|+|++ ..+++++.|.   .|.+||++.- .+++.+++|...|.+|.|.+.+ .+|++++.|
T Consensus       196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD  275 (1049)
T KOG0307|consen  196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD  275 (1049)
T ss_pred             cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC
Confidence            33334433   347899999986 4566665543   4999999753 5777888999999999999966 799999999


Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCC-EEEEeeCCCcEEEEEccCC
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~  206 (315)
                      +.|.+|+.++++.+..+.....++..+.|+|... .++.++.||.|.||.+.+.
T Consensus       276 ~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  276 NRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            9999999999999999988889999999999865 8889999999999999876

>KOG1523|consensus

Probab=99.84  E-value=1.2e-18  Score=137.27  Aligned_cols=230  Identities=12%  Similarity=0.150  Sum_probs=178.2

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce---EEEEec-CCCceeEEEEeecCcEEEEE-eCCeEEEEe
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT---LACEMN-VMEEVYDIKWLHLETMFAVA-QKDWVYIYD   78 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~   78 (315)
                      ..+.. ..+|+|.+|++|+..+|++.....|.||.....+   ...++. |...|+.+.|+|..+.|+++ .|..-++|.
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            34444 7899999999999999999999999999876655   455666 88999999999987666655 599999999


Q ss_pred             C-CCC----EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE----EEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          79 N-QGI----ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI----VSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        79 ~-~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      . .+.    .+..+.+...++++.|+|..+.||+|+.-..|.||-++....    .+.-+.+.+.|+++.|+|++-+|+.
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence            8 543    344567778999999999999999999999999988764321    1122345678999999999999999


Q ss_pred             EcCCCeEEEEcCC-----C-------------CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee
Q psy9936         150 GHRNGTVTMWSPT-----V-------------QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN  211 (315)
Q Consensus       150 ~~~d~~i~i~d~~-----~-------------~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~  211 (315)
                      |+.|+..+++..-     .             |+.+.++....+++..+.|+|+|..|+-.+.|+++.+-|.....+.+.
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence            9999999998631     1             123444444568999999999999999999999999999887633444


Q ss_pred             Eecc-CCCceeEEEccCCeEEEEc
Q psy9936         212 TFRT-RTPINNLAFSQRGLLATSR  234 (315)
Q Consensus       212 ~~~~-~~~v~~~~~s~~g~~~~~~  234 (315)
                      .... +.|..++.|-.+..+++.+
T Consensus       244 ~~~~~~lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  244 SVATAQLPLLSVSWISENSVVAAG  267 (361)
T ss_pred             chhhccCCceeeEeecCCceeecC
Confidence            4433 3477888887766544443

>KOG1034|consensus

Probab=99.84  E-value=1.6e-18  Score=136.94  Aligned_cols=231  Identities=14%  Similarity=0.202  Sum_probs=166.5

Q ss_pred             CCcEEEEEEcC-----CCCEEEEEcCCCeEEEEEccCce---EEEEec---CCCceeEEEEeec----CcEEEEEe-CCe
Q psy9936          10 QFGIYRMNYTK-----NGRHLLLGGKRGHVAAFDWVRKT---LACEMN---VMEEVYDIKWLHL----ETMFAVAQ-KDW   73 (315)
Q Consensus        10 ~~~v~~~~~s~-----~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~---~~~~v~~~~~~~~----~~~l~~~~-~~~   73 (315)
                      +.+|..++|++     .-+.+|+.+.+ .+.+|.....-   .++.+.   +.+..+.++|+-+    ..++|+++ -|.
T Consensus        38 ~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv  116 (385)
T KOG1034|consen   38 NKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV  116 (385)
T ss_pred             CCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence            57889999985     22456666544 68888764322   233332   5667888999875    34666555 799


Q ss_pred             EEEEeCCCCEE--EEeecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEe---ccCCCCeEEEEEcCCCCEE
Q psy9936          74 VYIYDNQGIEL--HCLKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDF---SAKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        74 i~i~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l  147 (315)
                      |+|.|+.....  ....|...|+.+.+.|+. +++++++.|.+|++|++++..++..|   .+|.+.|.++.|+++|.+|
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i  196 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRI  196 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCee
Confidence            99999954332  235677899999999985 78999999999999999999998886   4689999999999999999


Q ss_pred             EEEcCCCeEEEEcCCCCc---------------------------c----------------------------------
Q psy9936         148 CLGHRNGTVTMWSPTVQK---------------------------P----------------------------------  166 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~---------------------------~----------------------------------  166 (315)
                      ++++.|.++.+|++...+                           +                                  
T Consensus       197 ~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w  276 (385)
T KOG1034|consen  197 ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCW  276 (385)
T ss_pred             eccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEE
Confidence            999999999999987221                           0                                  


Q ss_pred             ---------------------eeEeecccccEEEE--EECCCCCEEEEeeCCCcEEEEEccCCCCCe-e-Eecc---CCC
Q psy9936         167 ---------------------LASLLCHKAGIQSV--AVNHTGTYMATSAGDSQLRIWDVRNLEGPL-N-TFRT---RTP  218 (315)
Q Consensus       167 ---------------------~~~~~~~~~~i~~~--~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~-~-~~~~---~~~  218 (315)
                                           +.++.-....|+-+  +|.|-+++||.|...|.+.+||+++. .+. . ++..   ...
T Consensus       277 ~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~-ep~~~ttl~~s~~~~t  355 (385)
T KOG1034|consen  277 KPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN-EPPKCTTLTHSKSGST  355 (385)
T ss_pred             ecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC-CCccCceEEeccccce
Confidence                                 00000001122323  44555778999999999999999987 442 2 2211   225


Q ss_pred             ceeEEEccCCe--EEEEcCCEEEecC
Q psy9936         219 INNLAFSQRGL--LATSRGNIVEFLK  242 (315)
Q Consensus       219 v~~~~~s~~g~--~~~~~~~~i~~~~  242 (315)
                      |+..+||.||.  ++++.|++|--|+
T Consensus       356 VRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  356 VRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             eeeeeecccCcEEEEEeCCCcEEEEE
Confidence            89999999994  5566788887776

>KOG1587|consensus

Probab=99.84  E-value=3.1e-18  Score=150.08  Aligned_cols=235  Identities=23%  Similarity=0.297  Sum_probs=174.7

Q ss_pred             CCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceE--EE-----EecCCCceeEEEEeec---CcEEEEEeCCeEEEE
Q psy9936           9 LQFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTL--AC-----EMNVMEEVYDIKWLHL---ETMFAVAQKDWVYIY   77 (315)
Q Consensus         9 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~--~~-----~~~~~~~v~~~~~~~~---~~~l~~~~~~~i~i~   77 (315)
                      -...|.|+.|+| +..++|.|..+|.|.+||+..+..  ..     .-.|..++..+.|..+   ..++.++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            378899999999 456788888999999999987654  21     2237889999999875   346667779999999


Q ss_pred             eCCCC-------EEEEee-------cCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCC--------eEEEEeccCCCC
Q psy9936          78 DNQGI-------ELHCLK-------VLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIG--------KIVSDFSAKKGK  134 (315)
Q Consensus        78 ~~~~~-------~~~~~~-------~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~  134 (315)
                      +++.-       ......       ....+++++|.+. -..|++|++.|.|..-+-...        +....+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            87421       111111       2256889999885 467899999999877333221        123355678899


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCC-CCcceeEeecccccEEEEEECCCCC-EEEEeeCCCcEEEEEccCC-CCCee
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPT-VQKPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNL-EGPLN  211 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~-~~~~~  211 (315)
                      |+++.++|=+..++..+.|.+++||... ...++..+..+...+++++|||... .++++..||.+.+||+... ..|+.
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~  480 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL  480 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence            9999999977654444449999999988 6778888887888899999999854 7888889999999999753 24555


Q ss_pred             EeccCCC-ceeEEEccCCeEEEEc--CCEEEecCC
Q psy9936         212 TFRTRTP-INNLAFSQRGLLATSR--GNIVEFLKP  243 (315)
Q Consensus       212 ~~~~~~~-v~~~~~s~~g~~~~~~--~~~i~~~~~  243 (315)
                      ......+ .+.+.|+++|.+++.+  .|++..+++
T Consensus       481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             cccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            5555553 5788899989766655  678888775

>KOG2445|consensus

Probab=99.83  E-value=2.1e-18  Score=135.16  Aligned_cols=224  Identities=12%  Similarity=0.155  Sum_probs=165.5

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC--CCEEEE----eecCCceEEEEEcCC--CceEEEEcCCCeEEEEEcc
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ--GIELHC----LKVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTS  120 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~--~~~~~~----~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~  120 (315)
                      |.+-|.++.|.+-|+.+|+++ |++++|||.+  .....+    ..|.+.|..+.|.+-  |+.+|+++.|+++.||.-.
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~   91 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ   91 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence            667799999999999998876 8999999962  222222    346689999999663  8999999999999999752


Q ss_pred             C------C---eEEEEeccCCCCeEEEEEcCC--CCEEEEEcCCCeEEEEcCCCC------cceeEee-------ccccc
Q psy9936         121 I------G---KIVSDFSAKKGKLSVMTQNPY--NACICLGHRNGTVTMWSPTVQ------KPLASLL-------CHKAG  176 (315)
Q Consensus       121 ~------~---~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~i~d~~~~------~~~~~~~-------~~~~~  176 (315)
                      .      +   ....++....+.|+.+.|.|.  |-.||+++.||.++||+.-..      ....++.       .+..+
T Consensus        92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~  171 (361)
T KOG2445|consen   92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP  171 (361)
T ss_pred             ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence            1      1   233445566778999999994  568999999999999986532      2223332       35567


Q ss_pred             EEEEEECCC---CCEEEEeeCC-----CcEEEEEccCCC---CCeeEeccCC-CceeEEEccCC------eEEEEcCCEE
Q psy9936         177 IQSVAVNHT---GTYMATSAGD-----SQLRIWDVRNLE---GPLNTFRTRT-PINNLAFSQRG------LLATSRGNIV  238 (315)
Q Consensus       177 i~~~~~sp~---g~~l~~~~~d-----~~i~iwd~~~~~---~~~~~~~~~~-~v~~~~~s~~g------~~~~~~~~~i  238 (315)
                      ..|+.|+|.   ..+||+|+.+     +.+.||......   ..+.++..+. +|++++|.|+-      +.+++.|| |
T Consensus       172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v  250 (361)
T KOG2445|consen  172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V  250 (361)
T ss_pred             ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence            889999986   4578888876     468899876542   2233444444 79999999984      23445576 7


Q ss_pred             EecCC------------------------------------CceeecccccccccCCcchhhhhhhhhHHHh
Q psy9936         239 EFLKP------------------------------------PEINFEPRRKANKAGGSVQRAKVKKIVRETA  274 (315)
Q Consensus       239 ~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (315)
                      ++|++                                    +.+.|...|..|++.+.|+..|.++......
T Consensus       251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~  322 (361)
T KOG2445|consen  251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL  322 (361)
T ss_pred             EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence            76543                                    6788888999999999999999888765444

>KOG1063|consensus

Probab=99.83  E-value=7.8e-19  Score=150.91  Aligned_cols=234  Identities=14%  Similarity=0.221  Sum_probs=180.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-ceEEE--Eec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC--
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-KTLAC--EMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI--   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~--   82 (315)
                      ..+.++..|+|++..+++-+..|..++|.... .....  .+. |.+.|.++.|.|.|.+|.+.+ |.+-+++-.-+.  
T Consensus       316 a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~  395 (764)
T KOG1063|consen  316 AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ  395 (764)
T ss_pred             ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccccc
Confidence            34578889999999999999999999998332 22222  222 888999999999998887765 888888876432  


Q ss_pred             EEEEe----ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-------------------------------------
Q psy9936          83 ELHCL----KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-------------------------------------  121 (315)
Q Consensus        83 ~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------------------------------------  121 (315)
                      +.+.+    .|.....|+++-+....|++|....-+++|+...                                     
T Consensus       396 ~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~  475 (764)
T KOG1063|consen  396 EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF  475 (764)
T ss_pred             ceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence            22332    2446789999988666788888888888885431                                     


Q ss_pred             ------CeE---------------------------------EEEeccCCCCeEEEEEcCCCCEEEEEcCC-----CeEE
Q psy9936         122 ------GKI---------------------------------VSDFSAKKGKLSVMTQNPYNACICLGHRN-----GTVT  157 (315)
Q Consensus       122 ------~~~---------------------------------~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~i~  157 (315)
                            |..                                 ++.+.+|...|++++.+|+|+++|+++..     ..|+
T Consensus       476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~  555 (764)
T KOG1063|consen  476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR  555 (764)
T ss_pred             ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE
Confidence                  000                                 11234677789999999999999998754     3699


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee---EeccCCC-ceeEEEccCCe--EE
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN---TFRTRTP-INNLAFSQRGL--LA  231 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~-v~~~~~s~~g~--~~  231 (315)
                      +|+..+...++.+.+|.-.|+.++|||||+||++.+.|.++.+|..........   ..+.|.. |+++.|+|++.  ..
T Consensus       556 lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT  635 (764)
T KOG1063|consen  556 LWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT  635 (764)
T ss_pred             EEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE
Confidence            999999998999999999999999999999999999999999999865422222   2456665 79999999986  44


Q ss_pred             EEcCCEEEecCC
Q psy9936         232 TSRGNIVEFLKP  243 (315)
Q Consensus       232 ~~~~~~i~~~~~  243 (315)
                      +|.|.++++|..
T Consensus       636 aSRDK~VkVW~~  647 (764)
T KOG1063|consen  636 ASRDKKVKVWEE  647 (764)
T ss_pred             ecCCceEEEEec
Confidence            556999999976

>KOG0322|consensus

Probab=99.83  E-value=2.1e-19  Score=137.95  Aligned_cols=238  Identities=18%  Similarity=0.194  Sum_probs=177.7

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEeCCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~   80 (315)
                      .|-+.. .+.|+++.|-.+++ |.+|...|.+.+|++.+.+....++  +...|+.+.-.|++.+..-+.|..+.+|++.
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence            355666 78899999988774 8889999999999999988877776  5667888888888777777778888888864


Q ss_pred             CCEE-------------------------------------------------EEe------ecCCceEEEEEcCC-C--
Q psy9936          81 GIEL-------------------------------------------------HCL------KVLNKVTRMEFLPY-H--  102 (315)
Q Consensus        81 ~~~~-------------------------------------------------~~~------~~~~~v~~~~~~~~-~--  102 (315)
                      ....                                                 ..+      ...+.+.+..+..+ +  
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            3100                                                 000      01134455544332 2  


Q ss_pred             ceEEEEcCCCeEEEEEccCCe----------EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC--cc--ee
Q psy9936         103 FLLATASEEGYLSWLDTSIGK----------IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ--KP--LA  168 (315)
Q Consensus       103 ~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~--~~--~~  168 (315)
                      -++++|-++|.+.+||+.++.          .+.....|..+|.++.+.+.-..=++|+.+..+..|.+...  ..  -.
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            256778889999999999873          33334468889999999876656677888888999987643  11  11


Q ss_pred             EeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC-e-EEEEcCCEEEecCC
Q psy9936         169 SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG-L-LATSRGNIVEFLKP  243 (315)
Q Consensus       169 ~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g-~-~~~~~~~~i~~~~~  243 (315)
                      ++.-..-.|..+.+-||++.+||++.|+.||||..++. .++..++.|. +|++++|+|+. . .+++.|+.|..|+.
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22222346788999999999999999999999999999 9999999887 69999999995 4 45567999999974

>KOG0642|consensus

Probab=99.83  E-value=2.9e-19  Score=150.26  Aligned_cols=205  Identities=12%  Similarity=0.172  Sum_probs=167.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC--------ceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR--------KTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~   79 (315)
                      ...|+.++|.|....|++++.||.|.+|+++.        -+++.++. |.++|.|++..+++..+.+++ ||+|+.|++
T Consensus       294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~  373 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL  373 (577)
T ss_pred             hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence            67889999999999999999999999999932        13456666 999999999999999888887 999999965


Q ss_pred             C-------CCE-----EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec------------------
Q psy9936          80 Q-------GIE-----LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS------------------  129 (315)
Q Consensus        80 ~-------~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------  129 (315)
                      .       ...     -...+|...++.+++|+....|++++.||+++.|+.....+ .++.                  
T Consensus       374 p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~  452 (577)
T KOG0642|consen  374 PPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRP  452 (577)
T ss_pred             CCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchh
Confidence            2       111     12345778999999999999999999999999998754332 1110                  


Q ss_pred             ---------------------------c-------CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccc
Q psy9936         130 ---------------------------A-------KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKA  175 (315)
Q Consensus       130 ---------------------------~-------~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  175 (315)
                                                 .       ....+..+.++|.+.+.+++..|+.|+++|..+++++.....|..
T Consensus       453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~  532 (577)
T KOG0642|consen  453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD  532 (577)
T ss_pred             HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc
Confidence                                       0       012255677888888999999999999999999999999999999


Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC
Q psy9936         176 GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR  216 (315)
Q Consensus       176 ~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  216 (315)
                      .++++++.|+|-+|++++.|+.+++|.+... .++.....|
T Consensus       533 svtslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es~~~  572 (577)
T KOG0642|consen  533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLESTAH  572 (577)
T ss_pred             eecceeecCCCceEEeecCCceeehhhccch-heeeccccc
Confidence            9999999999999999999999999999776 566555444

>KOG1007|consensus

Probab=99.82  E-value=1.5e-18  Score=134.89  Aligned_cols=195  Identities=15%  Similarity=0.174  Sum_probs=154.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE-EEEec------CCCceeEEEEee--cCcEEEEEeCCeEEEEeCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL-ACEMN------VMEEVYDIKWLH--LETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~l~~~~~~~i~i~~~~   80 (315)
                      .+.|.|+.|.|++..+++-. +..|.+|+++.+.. ...+.      +....++-+|+|  +++.+++.+++++..||+.
T Consensus       123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R  201 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR  201 (370)
T ss_pred             hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence            46789999999999999876 67899999987665 33332      334577788998  7999999999999999995


Q ss_pred             C-CEEEEe--ecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCC-CCEEEEEcCCC
Q psy9936          81 G-IELHCL--KVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPY-NACICLGHRNG  154 (315)
Q Consensus        81 ~-~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~  154 (315)
                      + .+...+  .|...|..+.|+|+. .+|++++.||.|++||++.. .++..+.+|...|.++.|+|. .+++++|+.|.
T Consensus       202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs  281 (370)
T KOG1007|consen  202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS  281 (370)
T ss_pred             chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence            3 233333  356789999999985 57899999999999999854 588889999999999999995 45888999999


Q ss_pred             eEEEEcCCCC-----------------------------cceeEeecccccEEEEEECCCCC-EEEEeeCCCcEEEEEcc
Q psy9936         155 TVTMWSPTVQ-----------------------------KPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVR  204 (315)
Q Consensus       155 ~i~i~d~~~~-----------------------------~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~  204 (315)
                      .|.+|...+-                             ..+.++..|...|.+++||.... .+|+-+.||.+.|=.+.
T Consensus       282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            9999964321                             02456677999999999987665 56777999998876654


Q ss_pred             C
Q psy9936         205 N  205 (315)
Q Consensus       205 ~  205 (315)
                      .
T Consensus       362 r  362 (370)
T KOG1007|consen  362 R  362 (370)
T ss_pred             h
Confidence            3

>KOG0650|consensus

Probab=99.82  E-value=1.2e-18  Score=147.61  Aligned_cols=237  Identities=15%  Similarity=0.200  Sum_probs=181.6

Q ss_pred             EEEeeCCCcEEEEEEcCCCC--EEEEEcCCCeEEEEEccCc------------------------------------e--
Q psy9936           4 QFDLDLQFGIYRMNYTKNGR--HLLLGGKRGHVAAFDWVRK------------------------------------T--   43 (315)
Q Consensus         4 ~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v~~~~~~------------------------------------~--   43 (315)
                      +..+.+.+.|.|++|+|.+.  .||++- ...+.|.+..-|                                    +  
T Consensus       435 vr~~~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~  513 (733)
T KOG0650|consen  435 VRTVQFDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKG  513 (733)
T ss_pred             EEEEeecceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccc
Confidence            44556688999999999876  344332 222333332111                                    0  


Q ss_pred             EEEEecCCCceeEEEEeecCcEEEEEe----CCeEEEEeCCCCEEE-Ee-ecCCceEEEEEcCCCceEEEEcCCCeEEEE
Q psy9936          44 LACEMNVMEEVYDIKWLHLETMFAVAQ----KDWVYIYDNQGIELH-CL-KVLNKVTRMEFLPYHFLLATASEEGYLSWL  117 (315)
Q Consensus        44 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  117 (315)
                      ....+.|...|..+.|+..|.+|++..    ...|.|+++.....+ .+ ...+.|.++.|+|...+|++++. ..|++|
T Consensus       514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY  592 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY  592 (733)
T ss_pred             eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence            123455778899999999999999875    257999998543322 23 34478999999999988888875 479999


Q ss_pred             EccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC-CcceeEeecccccEEEEEECCCCCEEEEeeCCC
Q psy9936         118 DTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV-QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS  196 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~  196 (315)
                      |+.....+..+......|..|+.+|.|..|+.|+.|+.+..||+.- .++.+++.-|...+++++|++.-.++++|+.||
T Consensus       593 dL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg  672 (733)
T KOG0650|consen  593 DLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG  672 (733)
T ss_pred             ehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence            9988777777766777899999999999999999999999999874 478888889999999999999999999999999


Q ss_pred             cEEEEEccCC--------CCCeeEeccCC-----CceeEEEccCC--eEEEEcCCEEEecC
Q psy9936         197 QLRIWDVRNL--------EGPLNTFRTRT-----PINNLAFSQRG--LLATSRGNIVEFLK  242 (315)
Q Consensus       197 ~i~iwd~~~~--------~~~~~~~~~~~-----~v~~~~~s~~g--~~~~~~~~~i~~~~  242 (315)
                      ++.|+.-.-.        --++..+.+|.     +|.+..|+|..  ++.+++||+|++|.
T Consensus       673 tv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  673 TVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             cEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            9998864311        13456666664     47888999998  57788899999873

>KOG1009|consensus

Probab=99.82  E-value=9.1e-19  Score=141.85  Aligned_cols=189  Identities=17%  Similarity=0.241  Sum_probs=147.4

Q ss_pred             CCCceeEEEEeecCc-EEEEEe-CCeEEEEeCC----CC---EEEE---e-ecCCceEEEEEcCCCceEEEEcCCCeEEE
Q psy9936          50 VMEEVYDIKWLHLET-MFAVAQ-KDWVYIYDNQ----GI---ELHC---L-KVLNKVTRMEFLPYHFLLATASEEGYLSW  116 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~-~l~~~~-~~~i~i~~~~----~~---~~~~---~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  116 (315)
                      ...++..+.|.++.. .+++++ |..|++|.++    ++   .+..   + .|...|+++.|+|+|..||+|+.+|.+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            456799999998754 777765 8999999862    12   2222   2 35689999999999999999999999999


Q ss_pred             EEcc--------C--------CeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEE
Q psy9936         117 LDTS--------I--------GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       117 ~d~~--------~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  180 (315)
                      |-..        +        -.....+.+|...+..++|+|+++++++++.|..+++||+..|+.+..+..|...+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9765        2        12344567799999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec--------------------cCC----CceeEEEccCCeEEEEcCC
Q psy9936         181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR--------------------TRT----PINNLAFSQRGLLATSRGN  236 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~----~v~~~~~s~~g~~~~~~~~  236 (315)
                      +|.|-++|+++-+.|...+.+.+... ..++...                    ...    -...++|+|||.++...+|
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~-~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLK-QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeee-eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            99999999999999987766666543 2111111                    111    1467899999977766555


Q ss_pred             EEE
Q psy9936         237 IVE  239 (315)
Q Consensus       237 ~i~  239 (315)
                      .++
T Consensus       251 ~~~  253 (434)
T KOG1009|consen  251 LFK  253 (434)
T ss_pred             eee
Confidence            444

>KOG0303|consensus

Probab=99.82  E-value=4.2e-18  Score=137.62  Aligned_cols=196  Identities=18%  Similarity=0.257  Sum_probs=154.6

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCce-------EEEEec-CCCceeEEEEeec-Cc-EEEEEeCCeEEEEe
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKT-------LACEMN-VMEEVYDIKWLHL-ET-MFAVAQKDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~-------~~~~~~-~~~~v~~~~~~~~-~~-~l~~~~~~~i~i~~   78 (315)
                      .++|..++|+| +...||+|+.|.+|.||.+..+-       ++..+. |...|..++|+|. .+ ++..++|++|.+|+
T Consensus        81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWn  160 (472)
T KOG0303|consen   81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWN  160 (472)
T ss_pred             cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEe
Confidence            78899999999 55689999999999999986443       234444 8889999999995 33 44455699999999


Q ss_pred             C-CCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC-eEEEEEcCCCCEEEEEc---CC
Q psy9936          79 N-QGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK-LSVMTQNPYNACICLGH---RN  153 (315)
Q Consensus        79 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~---~d  153 (315)
                      + ++..+..+.|...|+++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+. ...+.|-.+|.++-+|.   .+
T Consensus       161 v~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se  240 (472)
T KOG0303|consen  161 VGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE  240 (472)
T ss_pred             ccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence            9 5666777889999999999999999999999999999999999999887777653 44566778888555553   46


Q ss_pred             CeEEEEcCCCCc-c--eeEeecccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCC
Q psy9936         154 GTVTMWSPTVQK-P--LASLLCHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNL  206 (315)
Q Consensus       154 ~~i~i~d~~~~~-~--~~~~~~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~  206 (315)
                      ..+.+||..+-+ +  +.++. ..+.|.-.-|.||...++.+ -.|+.|+.|.+.+.
T Consensus       241 Rq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  241 RQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             cceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            789999977643 2  23333 35667777788998876655 47999999999875

>KOG0771|consensus

Probab=99.82  E-value=5.2e-19  Score=144.01  Aligned_cols=192  Identities=16%  Similarity=0.213  Sum_probs=147.0

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-cCCCceeEEEEeecCcEEEEEeCCeEEEEeCC-CCEEEEee---
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-NVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GIELHCLK---   88 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~~~~~~~---   88 (315)
                      .+++|+++|..|++++.||.+|||++.+...+... .|...|.++.|+|||++|++-+.....||+.+ +..+....   
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence            68999999999999999999999997766655444 48899999999999999998775599999985 43333332   


Q ss_pred             cCCceEEEEEcCCC-----ceEEEEcCCCeEEEEEccCCe-----EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          89 VLNKVTRMEFLPYH-----FLLATASEEGYLSWLDTSIGK-----IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        89 ~~~~v~~~~~~~~~-----~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      .......+.|+.++     ..++....-+.|..||+....     ...+.......|++++.+++|++++.|+.||.|.|
T Consensus       228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai  307 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI  307 (398)
T ss_pred             cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence            12345667788776     233333444557776654221     11111122346999999999999999999999999


Q ss_pred             EcCCCCcceeEee-cccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         159 WSPTVQKPLASLL-CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       159 ~d~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      ++..+.+.++..+ .|...|+.+.|+|+.+++++.+.+..+.|..+.-
T Consensus       308 ~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  308 YDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999887776654 7999999999999999999999999988887764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=2.2e-17  Score=144.62  Aligned_cols=213  Identities=10%  Similarity=0.031  Sum_probs=150.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEc---CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CC--eEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGG---KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KD--WVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~---~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~~~~~~   82 (315)
                      ...+.+.+|||||+.|+..+   .+..|++|++.+++........+.+..+.|+|||+.|+...  ++  .|++||+.+.
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg  277 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  277 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            45688999999999988654   24579999998887655444445566789999999888653  33  6999999766


Q ss_pred             EEEEeec-CCceEEEEEcCCCceEEEEcCC-C--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC---Ce
Q psy9936          83 ELHCLKV-LNKVTRMEFLPYHFLLATASEE-G--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN---GT  155 (315)
Q Consensus        83 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---~~  155 (315)
                      ....+.. ...+....|+|+|+.|+..+.+ +  .|+++|+.++... .+..+........|+|||++|+..+.+   ..
T Consensus       278 ~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~  356 (429)
T PRK03629        278 QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQH  356 (429)
T ss_pred             CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCce
Confidence            5555443 3567889999999988777654 3  4555577666443 333344445678999999988776543   36


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCc---EEEEEccCCCCCeeEeccCC-CceeEEEccC
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ---LRIWDVRNLEGPLNTFRTRT-PINNLAFSQR  227 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~---i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~  227 (315)
                      |.+||+.+++. ..+.. ........|+|||++|+.++.++.   +.++++..  .....+..+. .+..++|+|-
T Consensus       357 I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        357 IAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCcCCcccCCC
Confidence            88999988753 33432 223346789999999999988764   67777754  4555565543 5888999873

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=3.3e-18  Score=150.09  Aligned_cols=205  Identities=14%  Similarity=0.129  Sum_probs=140.3

Q ss_pred             CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C---CeEEEEeCCCCEEEEeec-CCceEEEEEcCCCceE
Q psy9936          31 RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K---DWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFLL  105 (315)
Q Consensus        31 dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---~~i~i~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  105 (315)
                      +..|++||.+.........+...+.+..|+|||+.|+..+ +   ..|++||+.+.....+.. ......++|+|||+.|
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence            4689999987766544445777899999999999888765 2   379999997654433332 2345578999999988


Q ss_pred             EEEc-CCCeEEE--EEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCCC-cceeEeecccccEEEE
Q psy9936         106 ATAS-EEGYLSW--LDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVTMWSPTVQ-KPLASLLCHKAGIQSV  180 (315)
Q Consensus       106 ~~~~-~d~~i~~--~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~  180 (315)
                      +.++ .+|.+.+  ||+.++.. ..+..+...+....|+|||+.|+.++ .++...||+++.. .....+ .+..  ..+
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~  338 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSA  338 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCc
Confidence            8764 5776554  56665543 45556666788899999999776554 5778888876532 222223 3433  457


Q ss_pred             EECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeE--EEEcCCEEEecC
Q psy9936         181 AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLL--ATSRGNIVEFLK  242 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~~~i~~~~  242 (315)
                      .|+|||++|++.+.++ +.+||+.++ .... +.......++.|+|||.+  .++.++...+|.
T Consensus       339 ~~SpDG~~ia~~~~~~-i~~~Dl~~g-~~~~-lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        339 QISADGKTLVMINGDN-VVKQDLTSG-STEV-LSSTFLDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             cCCCCCCEEEEEcCCC-EEEEECCCC-CeEE-ecCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            8999999998887765 666999887 4332 222223467889999953  334566666554

>KOG1517|consensus

Probab=99.81  E-value=1.2e-17  Score=150.03  Aligned_cols=254  Identities=11%  Similarity=0.222  Sum_probs=187.1

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec----CCCceeEEEEeec--CcEE-EEEeCCeEEEEeC--CC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN----VMEEVYDIKWLHL--ETMF-AVAQKDWVYIYDN--QG   81 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~----~~~~v~~~~~~~~--~~~l-~~~~~~~i~i~~~--~~   81 (315)
                      .+...+.|+|-...++++...-.|+|||.+.++.+..+.    ....|+.+.+...  ..++ ++++||.|+||+-  ..
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            356778899988899998877789999999999877765    2346888988763  3444 4455999999975  21


Q ss_pred             -CEEEEeecC-----------CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc-CCCCeEEEEEc-CCCCEE
Q psy9936          82 -IELHCLKVL-----------NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA-KKGKLSVMTQN-PYNACI  147 (315)
Q Consensus        82 -~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~-p~~~~l  147 (315)
                       +....+...           +.-.-+.|.....+|++++.-..|+|||....+.+..+.. ....++++.-+ +.|+.+
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence             222211110           1113467777766777777788999999988777776653 33456766543 357899


Q ss_pred             EEEcCCCeEEEEcCCCC---cceeEeeccccc--EEEEEECCCCC-EEEEeeCCCcEEEEEccCC-CCCeeEeccC----
Q psy9936         148 CLGHRNGTVTMWSPTVQ---KPLASLLCHKAG--IQSVAVNHTGT-YMATSAGDSQLRIWDVRNL-EGPLNTFRTR----  216 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~--i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~----  216 (315)
                      +.|..||.|++||.|..   ..+...+.|...  |..+.+.+.|- .|++|+.||.|++||++.. ......+..|    
T Consensus      1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred             EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence            99999999999998864   346677788877  99999998766 4999999999999999983 1222223332    


Q ss_pred             CCceeEEEccCCeEEEEcC-CEEEecCC----------------------CceeecccccccccCCcchhh
Q psy9936         217 TPINNLAFSQRGLLATSRG-NIVEFLKP----------------------PEINFEPRRKANKAGGSVQRA  264 (315)
Q Consensus       217 ~~v~~~~~s~~g~~~~~~~-~~i~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~  264 (315)
                      +..+++..++...++|+++ +.|++|+.                      .+++|+|-.-++|.|+.|..+
T Consensus      1305 s~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred             ccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence            2389999999998777765 78888766                      789999999999999877654

>KOG1524|consensus

Probab=99.81  E-value=8e-19  Score=146.99  Aligned_cols=201  Identities=14%  Similarity=0.161  Sum_probs=154.0

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe-ecCCceEEEEEc
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL-KVLNKVTRMEFL   99 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~-~~~~~v~~~~~~   99 (315)
                      ..++.++.||.+.+.+ ..++....+. |.+.+.+-.|+|||.-|++++ ||.|++|...|.....+ ....+|.|++|.
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence            4777888999999988 5666666666 889999999999998777665 99999999877544443 344789999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEE
Q psy9936         100 PYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQS  179 (315)
Q Consensus       100 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  179 (315)
                      |+.+.++.+.. +.+.+=-+.....+-..+.|.+-|.++.|+|.++++++|++|-..++||.. |.++..-..|..+|++
T Consensus       155 p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITS  232 (737)
T KOG1524|consen  155 PNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITS  232 (737)
T ss_pred             CCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceee
Confidence            99765555433 467776666666667788999999999999999999999999999999987 6677777789999999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEE--cCCEEE
Q psy9936         180 VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATS--RGNIVE  239 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~--~~~~i~  239 (315)
                      ++|+|+ ..++.+|.. ++++=.           ..-+.|..++||+||.-+++  +.|.+.
T Consensus       233 va~npd-~~~~v~S~n-t~R~~~-----------p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWSYN-TARFSS-----------PRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             eeeccc-cceeeeeee-eeeecC-----------CCccceEEEEEcCCCceeeccccCceEE
Confidence            999999 666666543 333111           11235899999999953333  345444

>KOG1587|consensus

Probab=99.81  E-value=2e-17  Score=145.08  Aligned_cols=232  Identities=17%  Similarity=0.188  Sum_probs=173.2

Q ss_pred             CeEEEEEccCc-eEEEEecCCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCCCEE--------EEeecCCceEEEEEcC
Q psy9936          32 GHVAAFDWVRK-TLACEMNVMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQGIEL--------HCLKVLNKVTRMEFLP  100 (315)
Q Consensus        32 g~i~v~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~~~~--------~~~~~~~~v~~~~~~~  100 (315)
                      +.+.||++... .+...+.....|.++.|+|. ..++++|. +|.|.+||+.....        ....|..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47999999766 56677778889999999995 56666665 89999999953221        1234668999999987


Q ss_pred             CCc--eEEEEcCCCeEEEEEccCCeE-EEE-----ec------cCCCCeEEEEEcC-CCCEEEEEcCCCeEEEEc---CC
Q psy9936         101 YHF--LLATASEEGYLSWLDTSIGKI-VSD-----FS------AKKGKLSVMTQNP-YNACICLGHRNGTVTMWS---PT  162 (315)
Q Consensus       101 ~~~--~l~~~~~d~~i~~~d~~~~~~-~~~-----~~------~~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d---~~  162 (315)
                      +-.  -|++++.||.|..|+++.-.. ...     ..      .....+++++|.| +...|++|+++|.|.-=+   .+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            643  489999999999998874321 111     11      1123478899988 445889999999887733   33


Q ss_pred             CC-----cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc-CCCCCeeEeccCCC-ceeEEEccCC---eEEE
Q psy9936         163 VQ-----KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR-NLEGPLNTFRTRTP-INNLAFSQRG---LLAT  232 (315)
Q Consensus       163 ~~-----~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~-v~~~~~s~~g---~~~~  232 (315)
                      ..     +.+..+..|.++|..+.++|-+..++..+.|.+++||... .. .|+..+..+.. +++++|||..   .+++
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~-~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-SPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC-CcchhhhhccceeeeeEEcCcCceEEEEE
Confidence            22     2233556788999999999998876666669999999988 54 77777776654 9999999987   3445


Q ss_pred             EcCCEEEecCC------------------CceeecccccccccCCcchhh
Q psy9936         233 SRGNIVEFLKP------------------PEINFEPRRKANKAGGSVQRA  264 (315)
Q Consensus       233 ~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  264 (315)
                      ..+|.+.+|+.                  +.+.|++.|+.++.|+..+..
T Consensus       461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~  510 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTT  510 (555)
T ss_pred             cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcE
Confidence            56999999988                  567788999999999988733

>KOG2110|consensus

Probab=99.81  E-value=3.3e-17  Score=131.51  Aligned_cols=192  Identities=17%  Similarity=0.274  Sum_probs=152.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC--CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC-CEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR--GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG-IELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~-~~~~~   86 (315)
                      ...|.-+-||..  ++|..+.+  +.+++++...+..++.+..+.+|.++.++.  +.|++.-...|+|||+.. +.+++
T Consensus        46 ~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhT  121 (391)
T KOG2110|consen   46 GVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHT  121 (391)
T ss_pred             CeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcccEEEEecccceeehh
Confidence            344555666643  44444433  469999999999999998889999999864  456666666699999965 33444


Q ss_pred             ee----cCCceEEEEEcCCCceEEEEc--CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCe-EEEE
Q psy9936          87 LK----VLNKVTRMEFLPYHFLLATAS--EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGT-VTMW  159 (315)
Q Consensus        87 ~~----~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-i~i~  159 (315)
                      +.    +...+.++++++.+.+++.-+  ..|.|.+||+.+-+++..+..|.+.+.+++|+|+|.+||++++.|+ |||+
T Consensus       122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence            33    234566666666677888653  4688999999999999999999999999999999999999999985 7899


Q ss_pred             cCCCCcceeEeecc--cccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         160 SPTVQKPLASLLCH--KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       160 d~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      .+.+|+.+.+|+-.  ...|.+++|+|++.+|++.|..++|++|.+..
T Consensus       202 ~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  202 SVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99999999999732  35788999999999999999999999998864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=2.4e-16  Score=137.63  Aligned_cols=233  Identities=21%  Similarity=0.346  Sum_probs=184.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-EEEEecC-C-CceeEEEE-eecCc-EEEE-Ee-CCeEEEEeCCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-LACEMNV-M-EEVYDIKW-LHLET-MFAV-AQ-KDWVYIYDNQG-   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-~~~~~~~-~-~~v~~~~~-~~~~~-~l~~-~~-~~~i~i~~~~~-   81 (315)
                      ...+.++.+.+.+..++.++.++.+.+|+...+. ....+.. . ..+..+.+ .+++. +++. +. ++.+.+|+... 
T Consensus        65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  144 (466)
T COG2319          65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP  144 (466)
T ss_pred             cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence            7889999999999999999999999999998876 4444442 3 26777777 77776 4444 33 78999999975 


Q ss_pred             -CEEEE-eecCCceEEEEEcCCCceEEEEcC-CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEE
Q psy9936          82 -IELHC-LKVLNKVTRMEFLPYHFLLATASE-EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVT  157 (315)
Q Consensus        82 -~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~  157 (315)
                       ..... ..|...+..++|+|++..+++++. ++.+.+|++..+..+..+..|...+.+++|+|++. .+++++.|+.|+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence             44444 346688999999999998888885 99999999998888888888999999999999998 555558999999


Q ss_pred             EEcCCCCccee-EeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCCe--EEEE
Q psy9936         158 MWSPTVQKPLA-SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRGL--LATS  233 (315)
Q Consensus       158 i~d~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~--~~~~  233 (315)
                      +||...+..+. .+.+|.... ...|+|++.++++++.|+.+++|++......+..+..| ..+.++.|+|++.  +..+
T Consensus       225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  303 (466)
T COG2319         225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS  303 (466)
T ss_pred             EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence            99988777777 577888775 44899999999999999999999999772324444344 4689999999763  3334


Q ss_pred             cCCEEEecCC
Q psy9936         234 RGNIVEFLKP  243 (315)
Q Consensus       234 ~~~~i~~~~~  243 (315)
                      .++.+..|+.
T Consensus       304 ~d~~~~~~~~  313 (466)
T COG2319         304 SDGTVRLWDL  313 (466)
T ss_pred             CCCcEEEEEc
Confidence            4666888855

>KOG1034|consensus

Probab=99.80  E-value=2.5e-18  Score=135.90  Aligned_cols=156  Identities=16%  Similarity=0.278  Sum_probs=131.8

Q ss_pred             CCCceeEEEEee-----cCcEEEEEeCCeEEEEeCCCCE----EEEee---cCCceEEEEEcCC----CceEEEEcCCCe
Q psy9936          50 VMEEVYDIKWLH-----LETMFAVAQKDWVYIYDNQGIE----LHCLK---VLNKVTRMEFLPY----HFLLATASEEGY  113 (315)
Q Consensus        50 ~~~~v~~~~~~~-----~~~~l~~~~~~~i~i~~~~~~~----~~~~~---~~~~v~~~~~~~~----~~~l~~~~~d~~  113 (315)
                      |..++..++|++     ....+++++.+.+.+|...+..    ++...   +....+.++|+.+    ..++|.++.-|.
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv  116 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV  116 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence            667899999985     2456777778899999874322    22221   3356778888775    357889999999


Q ss_pred             EEEEEccCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEcCCCeEEEEcCCCCcceeEee---cccccEEEEEECCCCCEE
Q psy9936         114 LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN-ACICLGHRNGTVTMWSPTVQKPLASLL---CHKAGIQSVAVNHTGTYM  189 (315)
Q Consensus       114 i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~sp~g~~l  189 (315)
                      |+|.|+.+++....+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..+-   +|...|.++.|+++|.++
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i  196 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRI  196 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCee
Confidence            9999999999999999999999999999965 589999999999999999999988774   799999999999999999


Q ss_pred             EEeeCCCcEEEEEccC
Q psy9936         190 ATSAGDSQLRIWDVRN  205 (315)
Q Consensus       190 ~~~~~d~~i~iwd~~~  205 (315)
                      ++++.|.++++|++..
T Consensus       197 ~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  197 ASCGMDHSLKLWRLNV  212 (385)
T ss_pred             eccCCcceEEEEecCh
Confidence            9999999999999983

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=5.8e-16  Score=135.25  Aligned_cols=230  Identities=21%  Similarity=0.382  Sum_probs=178.7

Q ss_pred             cEEEEEE-cCCCC-EEEEEcC-CCeEEEEEccC-ceEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-CE
Q psy9936          12 GIYRMNY-TKNGR-HLLLGGK-RGHVAAFDWVR-KTLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-IE   83 (315)
Q Consensus        12 ~v~~~~~-s~~~~-~l~~~~~-dg~i~v~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~~   83 (315)
                      .+..+.+ ++++. +++..+. ++.+.+|+... ......+. |...+..+.|+|++..++.+.  ++.+++|++.. ..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP  190 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence            5677777 88887 5555444 89999999987 55555554 888999999999998777765  89999999964 44


Q ss_pred             EEEee-cCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          84 LHCLK-VLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVS-DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        84 ~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      +..+. |...+.+++|+|++. .+++++.|+.+.+||...+.... .+..|.... ...|+|++..+++++.|+.+++|+
T Consensus       191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~  269 (466)
T COG2319         191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD  269 (466)
T ss_pred             EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence            44444 568999999999997 55555899999999988787777 678887765 448999998889999999999999


Q ss_pred             CCCCcc-eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec--cCCC-ceeEEEccC-CeEEEE--
Q psy9936         161 PTVQKP-LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR--TRTP-INNLAFSQR-GLLATS--  233 (315)
Q Consensus       161 ~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~-v~~~~~s~~-g~~~~~--  233 (315)
                      ++.... +..+.+|...+.++.|+|++..+++++.|+.+.+||..+. .......  .+.. +..+.|.++ ..+..+  
T Consensus       270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (466)
T COG2319         270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS  348 (466)
T ss_pred             ecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCCceEEEEECCCCCEEEEeec
Confidence            997665 4444678899999999999888888999988999998887 5555444  5554 888888434 233333  


Q ss_pred             cCCEEEecCC
Q psy9936         234 RGNIVEFLKP  243 (315)
Q Consensus       234 ~~~~i~~~~~  243 (315)
                      .++.+..|+.
T Consensus       349 ~d~~~~~~~~  358 (466)
T COG2319         349 DDGTIRLWDL  358 (466)
T ss_pred             CCCcEEeeec
Confidence            5677777765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=1.2e-16  Score=136.03  Aligned_cols=195  Identities=11%  Similarity=0.116  Sum_probs=137.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC-CCeEEEEEccC-ce---EEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK-RGHVAAFDWVR-KT---LACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-   81 (315)
                      ...+..++|+|++++|++++. ++.|.+|++++ +.   ....+.+......++++|+++++.++.  ++.|.+||++. 
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            345678999999998887764 78899999864 22   223333334567889999998887665  68999999854 


Q ss_pred             CEEE-------EeecCCceEEEEEcCCCceEEEEcC-CCeEEEEEccC--C--eEEEEeccC------CCCeEEEEEcCC
Q psy9936          82 IELH-------CLKVLNKVTRMEFLPYHFLLATASE-EGYLSWLDTSI--G--KIVSDFSAK------KGKLSVMTQNPY  143 (315)
Q Consensus        82 ~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~--~~~~~~~~~------~~~v~~~~~~p~  143 (315)
                      ..+.       ..........+.|+|++++++++.. +++|.+|++..  +  +.+..+...      ......+.++|+
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            2221       1122345678999999999988876 89999999973  3  233333221      112346889999


Q ss_pred             CCEEEEEcC-CCeEEEEcCCCCcceeEeecc---cccEEEEEECCCCCEEEEeeC-CCcEEEEEcc
Q psy9936         144 NACICLGHR-NGTVTMWSPTVQKPLASLLCH---KAGIQSVAVNHTGTYMATSAG-DSQLRIWDVR  204 (315)
Q Consensus       144 ~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~  204 (315)
                      |++++++.. ++.|.+|+++......++.++   ......+.|+|+|++|++++. +++|.+|++.
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999988864 789999998654322222222   124567899999999998775 8899999885

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=8.7e-17  Score=141.54  Aligned_cols=213  Identities=12%  Similarity=0.033  Sum_probs=151.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC---CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--C--CeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK---RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--K--DWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~~~~~~   82 (315)
                      ...+.+.+|||||+.|+..+.   +..|++||+.+++......+.+.+....|+|||+.|+...  +  ..|++||+.+.
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  280 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG  280 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence            567899999999999887653   4689999999887655444666778899999998776543  3  35888899776


Q ss_pred             EEEEeecC-CceEEEEEcCCCceEEEEcC-CC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC---Ce
Q psy9936          83 ELHCLKVL-NKVTRMEFLPYHFLLATASE-EG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN---GT  155 (315)
Q Consensus        83 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---~~  155 (315)
                      ....+... .......|+|||+.|+..+. +|  .|+++|+..+... .+..+...+....|+|+|+.|+....+   ..
T Consensus       281 ~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~  359 (435)
T PRK05137        281 TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFS  359 (435)
T ss_pred             ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceE
Confidence            66665544 44567999999998887664 33  5888898765443 343344556778999999998876543   36


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCC------CcEEEEEccCCCCCeeEeccCCCceeEEEccC
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD------SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQR  227 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  227 (315)
                      |.+||+.++. ...+. ....+..+.|+|||++|+..+.+      ..+.++|+... . ...+.....+...+|+|-
T Consensus       360 i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~-~-~~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        360 IGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR-N-EREVPTPGDASDPAWSPL  433 (435)
T ss_pred             EEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC-c-eEEccCCCCccCcccCCC
Confidence            8889986553 33343 23356788999999988776543      25777787664 3 344444445778888873

>KOG1188|consensus

Probab=99.79  E-value=1.8e-17  Score=131.70  Aligned_cols=183  Identities=10%  Similarity=0.131  Sum_probs=141.3

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeec--CcEEE-EEeCCeEEEEeCCCC-EE--EEee-cC-Cce
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHL--ETMFA-VAQKDWVYIYDNQGI-EL--HCLK-VL-NKV   93 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~-~~~~~~i~i~~~~~~-~~--~~~~-~~-~~v   93 (315)
                      ..+|++..+|.|++||..+++.+..+. ++..++.+.|...  ...+. +++||+|++||+... +.  .... +. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            468888899999999999999998888 7778889999873  34444 445999999998432 11  1122 22 466


Q ss_pred             EEEEEcCCCceEEEEcC----CCeEEEEEccCCeE-EEE-eccCCCCeEEEEEcCC-CCEEEEEcCCCeEEEEcCCCCc-
Q psy9936          94 TRMEFLPYHFLLATASE----EGYLSWLDTSIGKI-VSD-FSAKKGKLSVMTQNPY-NACICLGHRNGTVTMWSPTVQK-  165 (315)
Q Consensus        94 ~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~-~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~i~d~~~~~-  165 (315)
                      .+++.+..++.+++|..    +-.+.+||.+..+. +.. ...|...|+++.|+|. .++|++|+.||.|.+||+.... 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            77777777888888854    66799999997655 444 4579999999999994 5699999999999999987542 


Q ss_pred             ---ceeEeecccccEEEEEECCCC-CEEEEeeCCCcEEEEEccCC
Q psy9936         166 ---PLASLLCHKAGIQSVAVNHTG-TYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       166 ---~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d~~i~iwd~~~~  206 (315)
                         .+..+ .|.+.|.++.|..++ +.+.+-+...+..+|+++.+
T Consensus       201 eDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  201 EDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             hhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence               23333 377889999998876 35777788889999999887

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=7.8e-17  Score=141.67  Aligned_cols=212  Identities=12%  Similarity=0.058  Sum_probs=147.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEE-e-CC--eEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVA-Q-KD--WVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~~--~i~i~~~~~~   82 (315)
                      ...+.+.+|+|||+.|+..+..   ..|++||+.+++........+....+.|+|||+.|+.. + ++  .|++||+.+.
T Consensus       203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g  282 (433)
T PRK04922        203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR  282 (433)
T ss_pred             CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence            4567889999999999887643   46999999888765444444555678999999877654 2 33  6999999776


Q ss_pred             EEEEeecC-CceEEEEEcCCCceEEEEcC-CCe--EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC---e
Q psy9936          83 ELHCLKVL-NKVTRMEFLPYHFLLATASE-EGY--LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG---T  155 (315)
Q Consensus        83 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---~  155 (315)
                      ....+... .....++|+|+|+.|+.++. +|.  |+++|+.+++... +..+......++|+|+|++|+..+.++   .
T Consensus       283 ~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~  361 (433)
T PRK04922        283 QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYR  361 (433)
T ss_pred             CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCcee
Confidence            66655443 34467899999998887664 444  7777776665433 322333445689999999888765432   6


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCC---CcEEEEEccCCCCCeeEeccC-CCceeEEEcc
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD---SQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQ  226 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~  226 (315)
                      |.+||+.+++.. .+. +......+.|+|||++++..+.+   +.+.++++..  .....+..+ ..+..++|+|
T Consensus       362 I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g--~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        362 IAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG--RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEEcccCCCCCCCCccCC
Confidence            999999887644 343 33345567999999988877653   3577888754  444555443 4578888887

>KOG1445|consensus

Probab=99.79  E-value=2.2e-18  Score=147.12  Aligned_cols=172  Identities=19%  Similarity=0.260  Sum_probs=139.2

Q ss_pred             EeecCcEEEE---EeCCeEEEEeCC--CC----EEEEeecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCC------
Q psy9936          59 WLHLETMFAV---AQKDWVYIYDNQ--GI----ELHCLKVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIG------  122 (315)
Q Consensus        59 ~~~~~~~l~~---~~~~~i~i~~~~--~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~------  122 (315)
                      |+.+...+++   ++.|.|-||+++  |.    .+-.+.....|+.+.|.| |...|+++++||.|++|.+..+      
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            3344555554   347899999984  22    222344457899999999 5678999999999999998753      


Q ss_pred             -eEEEEeccCCCCeEEEEEcCC-CCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         123 -KIVSDFSAKKGKLSVMTQNPY-NACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       123 -~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                       .+...+..|...|+++.|+|- .+.|++++.|.+|++||+++.+....+.+|...|.+++|||+|+.+|+.+.||+|++
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence             455667889999999999994 468999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCeeEeccCC--CceeEEEccCCeE
Q psy9936         201 WDVRNLEGPLNTFRTRT--PINNLAFSQRGLL  230 (315)
Q Consensus       201 wd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~  230 (315)
                      |..+...+++++-++.-  .--.+.|.-||++
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~  778 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRI  778 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence            99998767776654432  2356888889964

>KOG2394|consensus

Probab=99.78  E-value=5.3e-18  Score=142.05  Aligned_cols=165  Identities=23%  Similarity=0.302  Sum_probs=129.4

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCceEEEEec-----CCCceeEEEEeec--CcEEEEEeCCeEEEEeCCC-----------
Q psy9936          20 KNGRHLLLGGKRGHVAAFDWVRKTLACEMN-----VMEEVYDIKWLHL--ETMFAVAQKDWVYIYDNQG-----------   81 (315)
Q Consensus        20 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-----~~~~v~~~~~~~~--~~~l~~~~~~~i~i~~~~~-----------   81 (315)
                      |.+--++.|-..|.+.+.|....+....+.     ....|+++.|.|.  +.+++.-.+|.+++||..-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            345556667677888888866533322222     2367999999994  4455555699999997421           


Q ss_pred             ----CEEEE---e------------ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC
Q psy9936          82 ----IELHC---L------------KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        82 ----~~~~~---~------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p  142 (315)
                          .....   .            ...+.|..++|+|||++||+.+.||.++|||..+.+++..++..-+...|++|||
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence                01100   0            0125788899999999999999999999999998888888877788899999999


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECC
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNH  184 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp  184 (315)
                      ||++|++|++|.-|.||.+...+.+..-++|.++|+.|+|.|
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999999999999999999999999999999999999984

>KOG2139|consensus

Probab=99.78  E-value=6.3e-17  Score=129.66  Aligned_cols=191  Identities=14%  Similarity=0.229  Sum_probs=143.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeec-CcEEEEEeCCeEEEEeCCC-----
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHL-ETMFAVAQKDWVYIYDNQG-----   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~~~i~i~~~~~-----   81 (315)
                      +..+..++|++.-..+|++..|-.|++|+-.. .....+.  ....|.+++|-|. +.-|+++..+-|.+|..+.     
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN  176 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence            45678899999777888999999999999665 5555555  3457999999995 5788899999999997631     


Q ss_pred             CEE--------EEee--cCCceEEEEEcCCCceEEEEcC-CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q psy9936          82 IEL--------HCLK--VLNKVTRMEFLPYHFLLATASE-EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        82 ~~~--------~~~~--~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  150 (315)
                      ..+        ..+.  .+.+|+++.|.+||..+++++. +..|.+||..++..+.......+.++-+.|||||.+|+.+
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            110        1122  3378999999999999998875 5679999999987666554456678889999999999999


Q ss_pred             cCCCeEEEEcCC-CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         151 HRNGTVTMWSPT-VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       151 ~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      .-|+..++|+.. +.....-. ...+.|....|+|+|++|+..... .-++|.+
T Consensus       257 t~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sg-sp~lysl  308 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSG-SPRLYSL  308 (445)
T ss_pred             cccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence            999999999654 33333322 245699999999999976654432 2334444

>KOG1445|consensus

Probab=99.77  E-value=1.1e-17  Score=142.94  Aligned_cols=224  Identities=17%  Similarity=0.219  Sum_probs=160.1

Q ss_pred             EcCCCCEEEE--EcCCCeEEEEEccCc-eE----EEEecCCCceeEEEEee-cCcEEEEEe-CCeEEEEeCCCC------
Q psy9936          18 YTKNGRHLLL--GGKRGHVAAFDWVRK-TL----ACEMNVMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDNQGI------   82 (315)
Q Consensus        18 ~s~~~~~l~~--~~~dg~i~v~~~~~~-~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~------   82 (315)
                      |+.+...+|+  .+..|.|-||++... ++    +-.+.....|+++.|.| |...|+++. ||.|++|.+...      
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            3444555553  456789999998643 22    22333445799999999 666777665 799999997321      


Q ss_pred             ---EEEEeecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          83 ---ELHCLKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        83 ---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                         +-....|...|+++.|+|- ...|++++.|.+|.+||+.+++....+.+|.+.|..++|||+|+.+++.+.||+|++
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence               1122346688999999995 578999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCc-ceeEeeccc-ccEEEEEECCCCCEEEEeeCCC----cEEEEEccCCC-CCeeEeccCC--CceeEEEccCC-
Q psy9936         159 WSPTVQK-PLASLLCHK-AGIQSVAVNHTGTYMATSAGDS----QLRIWDVRNLE-GPLNTFRTRT--PINNLAFSQRG-  228 (315)
Q Consensus       159 ~d~~~~~-~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~d~----~i~iwd~~~~~-~~~~~~~~~~--~v~~~~~s~~g-  228 (315)
                      |..++++ ++++-.+.. ..--.|.|.-+|+++++.+.|.    .|.+||..+.. .++.+...+.  .+.-..+.+|. 
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~  826 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSN  826 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCc
Confidence            9998763 444433221 2334678989999998887665    58999987652 4454443332  23333455665 


Q ss_pred             e-EEEE-cCCEEEec
Q psy9936         229 L-LATS-RGNIVEFL  241 (315)
Q Consensus       229 ~-~~~~-~~~~i~~~  241 (315)
                      . ++.+ +|..|..+
T Consensus       827 ~lfltGKGD~~v~~y  841 (1012)
T KOG1445|consen  827 VLFLTGKGDRFVNMY  841 (1012)
T ss_pred             eEEEecCCCceEEEE
Confidence            3 3333 46666644

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.77  E-value=1e-16  Score=124.62  Aligned_cols=151  Identities=18%  Similarity=0.344  Sum_probs=111.9

Q ss_pred             eEEEEeecCcEEEEEeC-----------Ce--EEEEeCCCCEEEEe--ecCCceEEEEEcCCCceEEEE--cCCCeEEEE
Q psy9936          55 YDIKWLHLETMFAVAQK-----------DW--VYIYDNQGIELHCL--KVLNKVTRMEFLPYHFLLATA--SEEGYLSWL  117 (315)
Q Consensus        55 ~~~~~~~~~~~l~~~~~-----------~~--i~i~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~  117 (315)
                      -.+.|+|+|.+|++-.+           +.  ++.++..+.....+  ...++|.+++|+|+|..|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999987775421           23  44444444444443  334679999999999887654  356789999


Q ss_pred             EccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC---CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeC
Q psy9936         118 DTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR---NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG  194 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~  194 (315)
                      |++ ++.+..+.  ...++.+.|+|+|++|++++.   .|.|.+||.++.+.+.+.. |. .++.++|+|+|++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEe
Confidence            997 66666664  456789999999999998864   4679999999888887765 33 4689999999999999864


Q ss_pred             ------CCcEEEEEccCCCCCeeE
Q psy9936         195 ------DSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       195 ------d~~i~iwd~~~~~~~~~~  212 (315)
                            |+.++||+...  +.+..
T Consensus       164 ~~r~~~dng~~Iw~~~G--~~l~~  185 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQG--RLLYK  185 (194)
T ss_pred             ccceeccccEEEEEecC--eEeEe
Confidence                  67899999864  44443

>KOG1963|consensus

Probab=99.77  E-value=3.5e-16  Score=138.26  Aligned_cols=234  Identities=18%  Similarity=0.210  Sum_probs=166.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC--ce--EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR--KT--LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      ...++|.++||+++++|+|..||.|.+|.--.  +.  ....+. |...|.+++|+++|.+|.+|+ .+.+.+|.+.+..
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            34589999999999999999999999995322  11  123344 888999999999999999887 7899999996655


Q ss_pred             EEEeecC-CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc-----------CCCCeEEEEEcCCCCEEEEEc
Q psy9936          84 LHCLKVL-NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA-----------KKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        84 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~~~~  151 (315)
                      .+.++.. ++|..+.++||+.+.+....|..|.+....+.....++.+           ..+-.+.++++|.-+.++..+
T Consensus       285 kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~  364 (792)
T KOG1963|consen  285 KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG  364 (792)
T ss_pred             cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence            5555544 7899999999999999999999999998765443333221           123366778888777777788


Q ss_pred             CCCeEEEEcCCCCcceeEe-------------------------------------------------------------
Q psy9936         152 RNGTVTMWSPTVQKPLASL-------------------------------------------------------------  170 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~-------------------------------------------------------------  170 (315)
                      ..|.|.+||+-+.+.+..+                                                             
T Consensus       365 ~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~  444 (792)
T KOG1963|consen  365 HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF  444 (792)
T ss_pred             CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee
Confidence            8888888887544322111                                                             


Q ss_pred             -------ecccccEEEEEE-CCCCC-EEEEeeCCCcEEEEEccCCC-----C----CeeEe-ccCCCceeEEEccCCe-E
Q psy9936         171 -------LCHKAGIQSVAV-NHTGT-YMATSAGDSQLRIWDVRNLE-----G----PLNTF-RTRTPINNLAFSQRGL-L  230 (315)
Q Consensus       171 -------~~~~~~i~~~~~-sp~g~-~l~~~~~d~~i~iwd~~~~~-----~----~~~~~-~~~~~v~~~~~s~~g~-~  230 (315)
                             ..|...+...++ +|... .+++++.||.++||-+...+     .    +...- ....+++.++|+.||. +
T Consensus       445 ~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll  524 (792)
T KOG1963|consen  445 ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL  524 (792)
T ss_pred             EEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE
Confidence                   123333333333 33333 78899999999999884321     1    11111 1234799999999995 6


Q ss_pred             EEEcCCEEEecCC
Q psy9936         231 ATSRGNIVEFLKP  243 (315)
Q Consensus       231 ~~~~~~~i~~~~~  243 (315)
                      +++.+++|.+|++
T Consensus       525 a~s~~~~Itiwd~  537 (792)
T KOG1963|consen  525 AVSFDDTITIWDY  537 (792)
T ss_pred             EEecCCEEEEecC
Confidence            6778999999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.1e-15  Score=133.85  Aligned_cols=194  Identities=14%  Similarity=0.105  Sum_probs=136.4

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe----CCeEEEEeCCCCEEEEeec-CCceEEEEEcCCCceEE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ----KDWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFLLA  106 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~  106 (315)
                      ..|.++|.+.........+...+...+|+|||+.|+..+    +..|++|++.+.....+.. ...+..+.|+|||+.|+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            369999988766555555667899999999999888653    3479999997655444432 34456789999999887


Q ss_pred             EE-cCCC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC-C--eEEEEcCCCCcceeEeecccccEEEE
Q psy9936         107 TA-SEEG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN-G--TVTMWSPTVQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       107 ~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~i~~~  180 (315)
                      .. +.+|  .|++||+.+++... +..+...+....|+|||+.|+..+.+ +  .|.++|+.+++. ..+..+......+
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~  336 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA  336 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCE
Confidence            65 4344  58999998876544 33344567789999999988766653 4  455557776643 3444344456678


Q ss_pred             EECCCCCEEEEeeCC---CcEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         181 AVNHTGTYMATSAGD---SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      .|+|||++|+..+.+   ..|.+||+.++ . ...+..........|+|||.
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~~~~~~p~~SpDG~  386 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDTFLDETPSIAPNGT  386 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCCCCCCCceECCCCC
Confidence            999999999876644   35888999876 4 33333332356789999995

>KOG4497|consensus

Probab=99.77  E-value=3.4e-16  Score=124.12  Aligned_cols=246  Identities=17%  Similarity=0.243  Sum_probs=170.1

Q ss_pred             EEEEcCCCCEEEEE-cCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEeecC
Q psy9936          15 RMNYTKNGRHLLLG-GKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCLKVL   90 (315)
Q Consensus        15 ~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~   90 (315)
                      -+.|+.|..+++.+ ..++.|.+|++...+....+. ...++..++|+|||+.+...+  +-.|.+|.+.++....+++.
T Consensus        53 yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p  132 (447)
T KOG4497|consen   53 YIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP  132 (447)
T ss_pred             heeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc
Confidence            34444444433322 346789999999888888877 667899999999996665544  78999999987777777665


Q ss_pred             -CceEEEEEcCCCceEEEEcC------------------------------------CCeEEEEEccCCeEEEEeccCCC
Q psy9936          91 -NKVTRMEFLPYHFLLATASE------------------------------------EGYLSWLDTSIGKIVSDFSAKKG  133 (315)
Q Consensus        91 -~~v~~~~~~~~~~~l~~~~~------------------------------------d~~i~~~d~~~~~~~~~~~~~~~  133 (315)
                       ..+..++|+|+|++.+.++.                                    +..+.+||.--.-.+..+. -.-
T Consensus       133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~l  211 (447)
T KOG4497|consen  133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGL  211 (447)
T ss_pred             ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-ecc
Confidence             56788999999988776542                                    1124445422111111111 123


Q ss_pred             CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc-----------------------------------------------
Q psy9936         134 KLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP-----------------------------------------------  166 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~-----------------------------------------------  166 (315)
                      .+..+.|+|.+++|++|+.|+.+++.+--+.++                                               
T Consensus       212 G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~  291 (447)
T KOG4497|consen  212 GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE  291 (447)
T ss_pred             ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence            578899999999999999999998875322110                                               


Q ss_pred             -------------eeEee------cccccEEEEEECCCCCEEEEeeC--CCcEEEEEccCCCCCeeEeccCCCceeEEEc
Q psy9936         167 -------------LASLL------CHKAGIQSVAVNHTGTYMATSAG--DSQLRIWDVRNLEGPLNTFRTRTPINNLAFS  225 (315)
Q Consensus       167 -------------~~~~~------~~~~~i~~~~~sp~g~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  225 (315)
                                   +..++      ...-.+.-++|++|..|++|-..  -+.+.+||+++. +....+....+|....|+
T Consensus       292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avLiQk~piraf~Wd  370 (447)
T KOG4497|consen  292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-KLHAVLIQKHPIRAFEWD  370 (447)
T ss_pred             chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-hhhhhhhhccceeEEEeC
Confidence                         11111      01224567899999999998643  457999999997 766667777789999999


Q ss_pred             cCC--eEEEEcCCEEEecCC---------------CceeecccccccccCCcch
Q psy9936         226 QRG--LLATSRGNIVEFLKP---------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       226 ~~g--~~~~~~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      |..  +++.++...+..|.|               ..+.|..+|..++-.+.|.
T Consensus       371 P~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  371 PGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             CCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            987  456667778888877               5677777777776666554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2.5e-16  Score=138.01  Aligned_cols=213  Identities=14%  Similarity=0.050  Sum_probs=143.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEE-e-CCe--EEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVA-Q-KDW--VYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~~~--i~i~~~~~~   82 (315)
                      ...+.+.+|||||+.|+..+..   ..|++||+.+++........+.+....|+|||+.|+.+ . ++.  |+++|..+.
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  274 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS  274 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            5678899999999999877643   46999999988765544445566789999999888754 3 554  555566665


Q ss_pred             EEEEeecC-CceEEEEEcCCCceEEEEcC-CCeEEEEEc--cCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC---e
Q psy9936          83 ELHCLKVL-NKVTRMEFLPYHFLLATASE-EGYLSWLDT--SIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG---T  155 (315)
Q Consensus        83 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---~  155 (315)
                      ....+... .......|+|||+.|+..+. +|...+|.+  .++... .+..+.......+|+|||++|+..+.++   .
T Consensus       275 ~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~  353 (427)
T PRK02889        275 GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFK  353 (427)
T ss_pred             CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEE
Confidence            55555433 34567889999998876654 455555544  444432 2222223344678999999988776544   6


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC---cEEEEEccCCCCCeeEeccC-CCceeEEEccC
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS---QLRIWDVRNLEGPLNTFRTR-TPINNLAFSQR  227 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~  227 (315)
                      |.+||+.+++.. .+.. ......+.|+|||++|+.++.++   .+.+.++. + .....+..+ ..+...+|+|-
T Consensus       354 I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        354 LYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEECCCCCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCCCccCCC
Confidence            999999887643 3332 23346789999999988877544   35555663 3 455555544 35788888873

>KOG2111|consensus

Probab=99.76  E-value=1.1e-15  Score=120.67  Aligned_cols=228  Identities=15%  Similarity=0.212  Sum_probs=161.3

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEE--EeC------CeEEEEeC-C
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAV--AQK------DWVYIYDN-Q   80 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~------~~i~i~~~-~   80 (315)
                      ....+++|+.|...++++..+| .+||+.+..+...... ..+.+.-+...--.++|+.  |.+      +.|.|||- .
T Consensus         6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence            4456799999999999988777 9999987644332222 2222221111112234432  222      47999985 6


Q ss_pred             CCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc-CCeEEEEeccC--CCCeEEEEEcCCCCEEEE-EcCCCeE
Q psy9936          81 GIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS-IGKIVSDFSAK--KGKLSVMTQNPYNACICL-GHRNGTV  156 (315)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~-~~~d~~i  156 (315)
                      ..++..+....+|.++.+.++.  +++.- .+.|++|... +.+.++.+..-  +..+.+++-+.+..+||. |-.-|.|
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            7778888888999999998764  54443 5689999987 45666665432  333444443333345554 3456899


Q ss_pred             EEEcCCCCcc--eeEeecccccEEEEEECCCCCEEEEeeCCCc-EEEEEccCCCCCeeEeccC---CCceeEEEccCCeE
Q psy9936         157 TMWSPTVQKP--LASLLCHKAGIQSVAVNHTGTYMATSAGDSQ-LRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLL  230 (315)
Q Consensus       157 ~i~d~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~  230 (315)
                      +|-|+...+.  -..+.+|.+.|.|++.+-+|..+||+|..|+ |||||..++ .++++++-.   ..|.+++|||++.+
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~  240 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAFSPNSSW  240 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEeCCCccE
Confidence            9999987655  3677899999999999999999999999997 899999999 899888743   36999999999954


Q ss_pred             E--EEcCCEEEecCC
Q psy9936         231 A--TSRGNIVEFLKP  243 (315)
Q Consensus       231 ~--~~~~~~i~~~~~  243 (315)
                      +  +|..|+++++..
T Consensus       241 LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  241 LAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEEcCCCeEEEEEe
Confidence            3  344688987654

>KOG4227|consensus

Probab=99.76  E-value=2.5e-16  Score=127.54  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=123.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc------CceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV------RKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~------~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      .+.|.++.||.++++|++|+.|..+++|+.+      +.+++....  |...|.|++|...++++.+|. +++|.+.|++
T Consensus        56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE  135 (609)
T ss_pred             ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence            5788999999999999999999999999975      335555555  557899999998888887776 7999999996


Q ss_pred             CCE-EEEeecC---CceEEEEEcCCCceEEEEcCCCeEEEEEccCCe-EEEE--eccCCCCeEEEEEcCCC-CEEEEEcC
Q psy9936          81 GIE-LHCLKVL---NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK-IVSD--FSAKKGKLSVMTQNPYN-ACICLGHR  152 (315)
Q Consensus        81 ~~~-~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~--~~~~~~~v~~~~~~p~~-~~l~~~~~  152 (315)
                      +.+ +..+.+.   +.|+.+..+|..+.|++.+.++.|.+||.+... +...  +.........+-|+|-. .+|++.+.
T Consensus       136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE  215 (609)
T ss_pred             cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence            654 3444444   589999999999999999999999999998654 2222  22234457888999965 47888888


Q ss_pred             CCeEEEEcCCCC
Q psy9936         153 NGTVTMWSPTVQ  164 (315)
Q Consensus       153 d~~i~i~d~~~~  164 (315)
                      .+-+.+||.+..
T Consensus       216 ~~G~~~~D~R~~  227 (609)
T KOG4227|consen  216 TGGPNVFDRRMQ  227 (609)
T ss_pred             cCCCCceeeccc
Confidence            999999998753

>KOG2321|consensus

Probab=99.76  E-value=3e-16  Score=132.74  Aligned_cols=253  Identities=16%  Similarity=0.229  Sum_probs=180.3

Q ss_pred             EEeeCCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCCCc-eeEEEEeecC-cEEEEEeCCeEEEEeCCC
Q psy9936           5 FDLDLQFGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVMEE-VYDIKWLHLE-TMFAVAQKDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~-v~~~~~~~~~-~~l~~~~~~~i~i~~~~~   81 (315)
                      .++.....-+.|..+|||+|+ |+|.+.-.|++||+.+..+...-..... |.-.-.+.|- +.+....|.+|.+...-|
T Consensus        46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            345556777899999999976 5677788999999987665544433333 3333344443 344444577776654433


Q ss_pred             CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          82 IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .. ..+.-+..-..++++.-..-|++++....|+-+++..|..+..+....+.++++..++-..+|++|+.+|.|..||.
T Consensus       126 ~h-y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  126 RH-YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             ee-eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence            22 22233334455666554434555555667999999999999999888889999999999999999999999999999


Q ss_pred             CCCcceeEee------cccc-----cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC--CceeEEEccCC
Q psy9936         162 TVQKPLASLL------CHKA-----GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT--PINNLAFSQRG  228 (315)
Q Consensus       162 ~~~~~~~~~~------~~~~-----~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g  228 (315)
                      ++...+..+.      .|.+     .|+++.|+.+|-.+++|..+|.+.|||+++. +++..-....  +|..+.|.+.+
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~pi~~l~~~~~~  283 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELPIKKLDWQDTD  283 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccCCccceeeecccccC
Confidence            9876665554      2333     4999999999999999999999999999998 7766544333  79999998764


Q ss_pred             --eEEEEcC-CEEEecCC---------------CceeecccccccccCC
Q psy9936         229 --LLATSRG-NIVEFLKP---------------PEINFEPRRKANKAGG  259 (315)
Q Consensus       229 --~~~~~~~-~~i~~~~~---------------~~~~~~~~~~~~~~~~  259 (315)
                        ..+++.| ..+++|++               ..+++-|++.++..+.
T Consensus       284 ~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  284 QQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             CCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence              3555555 56778877               5566667765555443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.1e-15  Score=134.61  Aligned_cols=194  Identities=10%  Similarity=0.078  Sum_probs=139.9

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe----CCeEEEEeCCCCEEEEee-cCCceEEEEEcCCCceEE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ----KDWVYIYDNQGIELHCLK-VLNKVTRMEFLPYHFLLA  106 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  106 (315)
                      ..|.++|.++........+...+.+.+|+|||+.|+..+    +..|++||+.+.....+. ....+...+|+|+|+.|+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            478899987766655555778899999999999888764    358999999766555544 345677899999998765


Q ss_pred             -EEcCCCe--EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCCcceeEeecccccEEEE
Q psy9936         107 -TASEEGY--LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       107 -~~~~d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~~  180 (315)
                       +.+.++.  |++||+.++.. ..+..+........|+|||+.|+..+. ++  .|.++|+.+++. ..+..+...+..+
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~  339 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTP  339 (435)
T ss_pred             EEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCe
Confidence             4455554  77889887754 445556666677899999998877653 33  688889876643 4444345566778


Q ss_pred             EECCCCCEEEEeeCC---CcEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         181 AVNHTGTYMATSAGD---SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      .|+|+|++|+..+.+   ..|.+||+.++  ....+.....+..+.|+|||.
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt~~~~~~~p~~spDG~  389 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGS--GERILTSGFLVEGPTWAPNGR  389 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCC--ceEeccCCCCCCCCeECCCCC
Confidence            999999999887643   35888887654  333343333578899999995

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=9e-16  Score=134.58  Aligned_cols=194  Identities=13%  Similarity=0.084  Sum_probs=131.7

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC----CeEEEEeCCCCEEEEee-cCCceEEEEEcCCCceEE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK----DWVYIYDNQGIELHCLK-VLNKVTRMEFLPYHFLLA  106 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~~i~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  106 (315)
                      ..|.++|.+.........+...+.+.+|+|||+.|+..++    ..|++||+.+.....+. ....+.+.+|+|||+.|+
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            4677888765554444557778999999999998887652    36999999765554444 335667899999998776


Q ss_pred             -EEcCCCeEEEE--EccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CCeEEEEc--CCCCcceeEeecccccEEEE
Q psy9936         107 -TASEEGYLSWL--DTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NGTVTMWS--PTVQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       107 -~~~~d~~i~~~--d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~i~d--~~~~~~~~~~~~~~~~i~~~  180 (315)
                       +.+.+|...+|  |+..+. ...+..+........|+|||+.|+..+. ++...+|.  +.+++. ..+..+.......
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~  333 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSP  333 (427)
T ss_pred             EEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCce
Confidence             45667775555  444443 4455555555677899999998876554 45555554  444432 2232223334568


Q ss_pred             EECCCCCEEEEeeCCC---cEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         181 AVNHTGTYMATSAGDS---QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      +|||||++|+..+.++   .|.+||+.++ ... .+........+.|+|||.
T Consensus       334 ~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~~~-~lt~~~~~~~p~~spdg~  383 (427)
T PRK02889        334 RISPDGKLLAYISRVGGAFKLYVQDLATG-QVT-ALTDTTRDESPSFAPNGR  383 (427)
T ss_pred             EECCCCCEEEEEEccCCcEEEEEEECCCC-CeE-EccCCCCccCceECCCCC
Confidence            9999999998877654   5999999886 433 333333457889999994

>KOG4497|consensus

Probab=99.74  E-value=2.8e-17  Score=130.22  Aligned_cols=228  Identities=11%  Similarity=0.096  Sum_probs=162.6

Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEe--ecC
Q psy9936          15 RMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCL--KVL   90 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~--~~~   90 (315)
                      -..|||+|+++|+.+.- .+.|-|..+.+..+.+..-+.|..+.|..|..++.++.  ++.|.+|++...+..+.  ...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            35799999999998765 68888988888776666667788899999887777664  78999999976665543  234


Q ss_pred             CceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC---CCCcc
Q psy9936          91 NKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP---TVQKP  166 (315)
Q Consensus        91 ~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~---~~~~~  166 (315)
                      .++.++.|||+|+ .|.+..-+-.|.+|.+.+.+... +......+..++|+|||++.+.+++......+.+   .....
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            7899999999995 55666678899999998765443 3323345688999999999988876432222222   22344


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEE--EcCCEEEecCCC
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLAT--SRGNIVEFLKPP  244 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~--~~~~~i~~~~~~  244 (315)
                      +..+...+-..+.+.|+|||.+||+         ||.--. ..+..+....++..++|+|.+++++  +.|+.+|+.+  
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laV---------wd~~Le-ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln--  238 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLE-YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN--  238 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEE---------ecchhh-heeeeeeeccceeEEEeccccceEEeeccchhhhhhc--
Confidence            5566656667789999999987764         553322 2333444445789999999886544  4588888655  


Q ss_pred             ceeecccccccc
Q psy9936         245 EINFEPRRKANK  256 (315)
Q Consensus       245 ~~~~~~~~~~~~  256 (315)
                      .+.|.|-++++-
T Consensus       239 h~tWk~f~eflh  250 (447)
T KOG4497|consen  239 HFTWKPFGEFLH  250 (447)
T ss_pred             eeeeeehhhhcc
Confidence            566666666553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.6e-15  Score=133.36  Aligned_cols=194  Identities=14%  Similarity=0.102  Sum_probs=136.3

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe----CCeEEEEeCCCCEEEEeec-CCceEEEEEcCCCceEE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ----KDWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFLLA  106 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~  106 (315)
                      ..|.+||...........+...+.+.+|+|||+.|+..+    ...|++|++.+.....+.. .....++.|+|+|+.++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            468999987666555555777899999999999888765    2479999997655444433 34455789999998765


Q ss_pred             E-EcCCC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCCcceeEeecccccEEEE
Q psy9936         107 T-ASEEG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       107 ~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~~  180 (315)
                      . .+.+|  .|++||+.+++. ..+..+......++|+|||+.|+.++. ++  .|.++|+.+++. ..+..+......+
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~  341 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARA  341 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCE
Confidence            4 44444  599999988764 345555555667899999998877653 44  477777776653 3333233445578


Q ss_pred             EECCCCCEEEEeeCCC---cEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         181 AVNHTGTYMATSAGDS---QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      +|+|+|++|+..+.++   .|.+||+.++ ... .+........+.|+|||.
T Consensus       342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt~~~~~~~p~~spdG~  391 (433)
T PRK04922        342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLTPGSLDESPSFAPNGS  391 (433)
T ss_pred             EECCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECCCCCCCCCceECCCCC
Confidence            9999999998765443   5999999876 443 333333456789999995

>KOG2111|consensus

Probab=99.73  E-value=3.9e-15  Score=117.53  Aligned_cols=173  Identities=18%  Similarity=0.248  Sum_probs=136.2

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC--CEEEEeec---CCceEEEEEcCCCceEE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG--IELHCLKV---LNKVTRMEFLPYHFLLA  106 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~--~~~~~~~~---~~~v~~~~~~~~~~~l~  106 (315)
                      ..+.|||=...+++.++....+|.++.+.++  .|++.-.+.|++|....  +.+..+..   +....++.-+.+..+||
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence            4699999777778888888999999999765  57777889999998742  33444332   23333333222334555


Q ss_pred             EE-cCCCeEEEEEccCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEcCCCe-EEEEcCCCCcceeEeec--ccccEEEE
Q psy9936         107 TA-SEEGYLSWLDTSIGKI--VSDFSAKKGKLSVMTQNPYNACICLGHRNGT-VTMWSPTVQKPLASLLC--HKAGIQSV  180 (315)
Q Consensus       107 ~~-~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~i~~~  180 (315)
                      .- -.-|.|.+-|+...+.  ...+.+|.+.|.+++.+-+|..+|+++..|+ |||||..+++.+.+++-  ....|.++
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            43 4568999999986554  4667899999999999999999999999986 89999999999999873  34689999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         181 AVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +|||++.+||++|..|+++||.++..
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999999998764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=1.7e-15  Score=117.85  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=113.3

Q ss_pred             EEEEEcCCCCEEEEEcC----------CCeEEEEEccC-ceEEEEec--CCCceeEEEEeecCcEEEEEe---CCeEEEE
Q psy9936          14 YRMNYTKNGRHLLLGGK----------RGHVAAFDWVR-KTLACEMN--VMEEVYDIKWLHLETMFAVAQ---KDWVYIY   77 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~----------dg~i~v~~~~~-~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~---~~~i~i~   77 (315)
                      ..+.|+|+|.+|++-..          -|...+|-++. +.....+.  ..++|.+++|+|+|..+++..   +..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999998875432          13455555422 22333333  455799999999998876553   5689999


Q ss_pred             eCCCCEEEEeecCCceEEEEEcCCCceEEEEcC---CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC--
Q psy9936          78 DNQGIELHCLKVLNKVTRMEFLPYHFLLATASE---EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR--  152 (315)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--  152 (315)
                      |+++..+..+. ...+..+.|+|+|++|++++.   .|.+.+||+++.+.+.... |. .++.++|+|+|++|+++..  
T Consensus        89 d~~~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   89 DVKGKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             cCcccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEecc
Confidence            99877766664 467789999999999999864   4679999999888887765 33 4789999999999998763  


Q ss_pred             ----CCeEEEEcCCCCcceeEe
Q psy9936         153 ----NGTVTMWSPTVQKPLASL  170 (315)
Q Consensus       153 ----d~~i~i~d~~~~~~~~~~  170 (315)
                          |+.++||+.. |+.+...
T Consensus       166 r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  166 RLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ceeccccEEEEEec-CeEeEec
Confidence                6789999985 6555443

>KOG3881|consensus

Probab=99.72  E-value=9.4e-16  Score=124.06  Aligned_cols=215  Identities=17%  Similarity=0.213  Sum_probs=166.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce----EEEEecCCCceeEEEEeecC-cEEEEEe-C--CeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT----LACEMNVMEEVYDIKWLHLE-TMFAVAQ-K--DWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~v~~~~~~~~~-~~l~~~~-~--~~i~i~~~~~   81 (315)
                      ..+|..++.. || .|++|-.+|.+.+|....+.    .+..+....++..+.-++.. .++++|+ .  +.+.+||+++
T Consensus       105 ~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~  182 (412)
T KOG3881|consen  105 TKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ  182 (412)
T ss_pred             cccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence            3444444443 33 66777889999999987443    23334444566667666654 4455455 4  6799999954


Q ss_pred             C-EEEEee----------cCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEE
Q psy9936          82 I-ELHCLK----------VLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        82 ~-~~~~~~----------~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l  147 (315)
                      . .+...+          .+-.++++.|.+.  ...|++++.-+.+++||.+.+ +++..+.....+++++...|+|+.+
T Consensus       183 ~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~I  262 (412)
T KOG3881|consen  183 SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFI  262 (412)
T ss_pred             ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEE
Confidence            4 222211          1134567889887  789999999999999999876 5788888788899999999999999


Q ss_pred             EEEcCCCeEEEEcCCCCcceeE-eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEcc
Q psy9936         148 CLGHRNGTVTMWSPTVQKPLAS-LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQ  226 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  226 (315)
                      ++|..-+.+..||++.++.+.. +.+-.+.|.++..+|.+++||+++.|..+||+|+.+. +++......+.++.+.+.+
T Consensus       263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr-kll~kvYvKs~lt~il~~~  341 (412)
T KOG3881|consen  263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR-KLLHKVYVKSRLTFILLRD  341 (412)
T ss_pred             EEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc-hhhhhhhhhccccEEEecC
Confidence            9999999999999999987776 7788899999999999999999999999999999997 7777777777778877766


Q ss_pred             C
Q psy9936         227 R  227 (315)
Q Consensus       227 ~  227 (315)
                      +
T Consensus       342 ~  342 (412)
T KOG3881|consen  342 D  342 (412)
T ss_pred             C
Confidence            5

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=4.8e-14  Score=120.29  Aligned_cols=232  Identities=12%  Similarity=0.137  Sum_probs=153.6

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-CEEEEeec
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-IELHCLKV   89 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~~~~~~~~   89 (315)
                      ...+.|+|||+++++++.||.|.++|+.+++.+..+.......++++++||++++++.  .+.+.++|.++ +.+..+..
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            3457899999999999999999999999999999999777889999999999999886  79999999855 34444432


Q ss_pred             --------CCceEEEEEcCCCceEE-EEcCCCeEEEEEccCCeEEE-EeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEE
Q psy9936          90 --------LNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSIGKIVS-DFSAKKGKLSVMTQNPYNACICLG-HRNGTVTM  158 (315)
Q Consensus        90 --------~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i  158 (315)
                              ...+.++..+|....++ +.-+.+.|.+.|....+.+. .............|+|++++++.+ ..+..|.+
T Consensus       119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v  198 (369)
T PF02239_consen  119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV  198 (369)
T ss_dssp             -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred             ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEE
Confidence                    13577888888877554 44556889999987654332 222234457789999999987664 45667888


Q ss_pred             EcCCCCccee-------------------------------------------------------EeecccccEEEEEEC
Q psy9936         159 WSPTVQKPLA-------------------------------------------------------SLLCHKAGIQSVAVN  183 (315)
Q Consensus       159 ~d~~~~~~~~-------------------------------------------------------~~~~~~~~i~~~~~s  183 (315)
                      +|..+++.+.                                                       ++....++ .-+..+
T Consensus       199 iD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th  277 (369)
T PF02239_consen  199 IDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH  277 (369)
T ss_dssp             EETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred             EeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence            8876654322                                                       12211222 456778


Q ss_pred             CCCCEEEEe----eCCCcEEEEEccCCCCCeeEeccCCC--ceeEEEccCCe--EEEEc--CCEEEecCCCce
Q psy9936         184 HTGTYMATS----AGDSQLRIWDVRNLEGPLNTFRTRTP--INNLAFSQRGL--LATSR--GNIVEFLKPPEI  246 (315)
Q Consensus       184 p~g~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~g~--~~~~~--~~~i~~~~~~~~  246 (315)
                      |+++++.+.    ...++|.++|.++. +.+..+....+  +..+.|++||.  +++..  ++.|.+++...+
T Consensus       278 P~s~~vwvd~~~~~~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  278 PDSRYVWVDTFLNPDADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             TT-SEEEEE-TT-SSHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             CCCccEEeeccCCCCCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence            999999988    34578999999998 77777664444  89999999994  44443  337888877433

...

>KOG0771|consensus

Probab=99.71  E-value=1.8e-16  Score=129.35  Aligned_cols=185  Identities=16%  Similarity=0.171  Sum_probs=137.2

Q ss_pred             eEEEEeecCcEEEEEe-CCeEEEEeC-CC-CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc-
Q psy9936          55 YDIKWLHLETMFAVAQ-KDWVYIYDN-QG-IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA-  130 (315)
Q Consensus        55 ~~~~~~~~~~~l~~~~-~~~i~i~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-  130 (315)
                      ..++|+++|..++++. ||++++|+. +. ..+....|+..|.++.|+|||++|++.+.| ..+||+.+++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            5789999999998876 999999994 32 333446688999999999999999999999 899999999976665542 


Q ss_pred             -CCCCeEEEEEcCCC-----CEEEEEcCCCeEEEEcCCCCcc-----eeEeecccccEEEEEECCCCCEEEEeeCCCcEE
Q psy9936         131 -KKGKLSVMTQNPYN-----ACICLGHRNGTVTMWSPTVQKP-----LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLR  199 (315)
Q Consensus       131 -~~~~v~~~~~~p~~-----~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~  199 (315)
                       .......+.|+.|+     .+++....-+.|+.||+...+.     ..+...-...|++++.|++|+++|.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22335667788777     2333444556777777653321     111122335799999999999999999999999


Q ss_pred             EEEccCCCCCeeEec-cCC-CceeEEEccCCeEEE--EcCCEEEec
Q psy9936         200 IWDVRNLEGPLNTFR-TRT-PINNLAFSQRGLLAT--SRGNIVEFL  241 (315)
Q Consensus       200 iwd~~~~~~~~~~~~-~~~-~v~~~~~s~~g~~~~--~~~~~i~~~  241 (315)
                      |++.... +.++.++ .|. -|+.+.|+||.++.+  +.+....+.
T Consensus       307 i~~~~~l-q~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  307 IYDAKSL-QRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             EEEecee-eeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            9999998 6666654 455 499999999986443  455555543

>KOG1272|consensus

Probab=99.71  E-value=1.5e-17  Score=137.12  Aligned_cols=222  Identities=14%  Similarity=0.240  Sum_probs=173.2

Q ss_pred             ccEEEeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           2 TKQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         2 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      +-++++.....|..+.|-.+.+++|++. ...++||| ..|..+..+.....|..+.|.|..-+|++++ .|.+..-|+.
T Consensus       162 ~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS  239 (545)
T KOG1272|consen  162 KLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVS  239 (545)
T ss_pred             eeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeec
Confidence            3456777788999999999999999875 55799999 4566666777677899999999988888887 6889988985


Q ss_pred             -CCEEEEeec-CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          81 -GIELHCLKV-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        81 -~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                       |+.+..+.. .+.+..+.-+|-+..+-+|..+|+|.+|...+.+++..+..|.++|.++++.++|+|++|.+.|..++|
T Consensus       240 ~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI  319 (545)
T KOG1272|consen  240 TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI  319 (545)
T ss_pred             hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence             444444433 377888889999889999999999999999998988888899999999999999999999999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc-CC----CCCeeEeccCCCceeEEEccCC
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR-NL----EGPLNTFRTRTPINNLAFSQRG  228 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~-~~----~~~~~~~~~~~~v~~~~~s~~g  228 (315)
                      ||+++...+.++.. .-+...+++|.-| +||.+ ....+.||.-. .+    ..+........+|.++.|.|-.
T Consensus       320 WDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E  391 (545)
T KOG1272|consen  320 WDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE  391 (545)
T ss_pred             eeeccccccceeec-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence            99999887777764 4566788888766 34444 44469999532 21    1122222223478999999854

>KOG1523|consensus

Probab=99.71  E-value=1.1e-15  Score=120.71  Aligned_cols=192  Identities=15%  Similarity=0.160  Sum_probs=146.2

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE----EEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-C
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE----LHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-G  122 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~----~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~  122 (315)
                      ..++|+|.+|++|+..+|++. ...|.||...+..    .+.+. |...|+.+.|+|..+.|++++.|..-++|.... +
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            457899999999999999987 5589999986544    33333 457899999999999999999999999999843 3


Q ss_pred             --eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce----eEeecccccEEEEEECCCCCEEEEeeCCC
Q psy9936         123 --KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL----ASLLCHKAGIQSVAVNHTGTYMATSAGDS  196 (315)
Q Consensus       123 --~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~i~~~~~sp~g~~l~~~~~d~  196 (315)
                        ++.-.+..+...++++.|+|.++.|++|+.-..|.||-++...--    +.-..+.+.|++++|+|++-+|++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence              334445567888999999999999999999999999987753211    11134678899999999999999999999


Q ss_pred             cEEEEEcc-----CC------------CCCeeEe-ccCCCceeEEEccCCe--EEEEcCCEEEec
Q psy9936         197 QLRIWDVR-----NL------------EGPLNTF-RTRTPINNLAFSQRGL--LATSRGNIVEFL  241 (315)
Q Consensus       197 ~i~iwd~~-----~~------------~~~~~~~-~~~~~v~~~~~s~~g~--~~~~~~~~i~~~  241 (315)
                      .++|+..-     ..            +.++.++ ...+.+..+.|+|+|-  .-++.|+++..-
T Consensus       169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            99998642     11            0222333 2233589999999993  345667777633

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.2e-14  Score=128.20  Aligned_cols=213  Identities=12%  Similarity=0.022  Sum_probs=143.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CC--eEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KD--WVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~~~~~~   82 (315)
                      ...+...+|||||+.|+..+.+   ..|++|++.+++........+.+....|+|||+.|+...  ++  .|++||+.+.
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~  277 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR  277 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            4567888999999999876543   369999999887655444445566789999999887543  33  6899999776


Q ss_pred             EEEEeecC-CceEEEEEcCCCceEEEEcC-CC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC-C--e
Q psy9936          83 ELHCLKVL-NKVTRMEFLPYHFLLATASE-EG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN-G--T  155 (315)
Q Consensus        83 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~--~  155 (315)
                      ....+... .......|+|+|+.++..+. ++  .|+++|+.+++.... ...........|+|+|+.|+..+.+ +  .
T Consensus       278 ~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~~~~~  356 (430)
T PRK00178        278 QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQDGNFH  356 (430)
T ss_pred             CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCceE
Confidence            66555433 44567889999987776654 33  577888877764332 2222233457899999988776543 2  5


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCC-C--cEEEEEccCCCCCeeEeccC-CCceeEEEccC
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD-S--QLRIWDVRNLEGPLNTFRTR-TPINNLAFSQR  227 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~  227 (315)
                      |.+||+.+++. ..+. +........|+|||++++..+.+ +  .+.++++..  .....+..+ ..+...+|+|-
T Consensus       357 l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g--~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        357 VAAQDLQRGSV-RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING--RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEECCCCCE-EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcCCCCCcCCCccCCC
Confidence            88999988754 3333 22233356899999988877654 2  466777754  334444443 34777888873

>KOG2394|consensus

Probab=99.71  E-value=6.8e-16  Score=129.61  Aligned_cols=211  Identities=16%  Similarity=0.213  Sum_probs=148.2

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE------EecCCCceeEEEEe-----ecCcEEEEE-eCCeEEEEeCC
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC------EMNVMEEVYDIKWL-----HLETMFAVA-QKDWVYIYDNQ   80 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~------~~~~~~~v~~~~~~-----~~~~~l~~~-~~~~i~i~~~~   80 (315)
                      +....++-.|.+|+..- ...+++|+...+..+.      .+.. ....|-.|+     |.+--+.++ .-|.+.+.|..
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            34445555667777653 3468899877433211      1111 122333342     334444444 46888888874


Q ss_pred             CCEEEE------eecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccC--------------Ce--------------EE
Q psy9936          81 GIELHC------LKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSI--------------GK--------------IV  125 (315)
Q Consensus        81 ~~~~~~------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~--------------~~--------------~~  125 (315)
                      ..++..      ......++|+.|-|.+ ..++++-.+|.+++||...              +.              ++
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv  283 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV  283 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence            332222      1123789999999964 5677778899999997531              11              11


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         126 SDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       126 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      ..+....+.|+..+|+|||++||+.+.||.++|||..+.+.+..++..-+...|++|||||+|+++|+.|--|.||.+..
T Consensus       284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence            11222345688999999999999999999999999999888877777778999999999999999999999999999998


Q ss_pred             CCCCeeEeccCC-CceeEEEcc
Q psy9936         206 LEGPLNTFRTRT-PINNLAFSQ  226 (315)
Q Consensus       206 ~~~~~~~~~~~~-~v~~~~~s~  226 (315)
                      . +.+..-.+|. .|..++|+|
T Consensus       364 r-RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  364 R-RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             c-eEEEeccccccceeeEeecc
Confidence            8 7777777776 589999985

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=7.9e-15  Score=129.08  Aligned_cols=213  Identities=14%  Similarity=0.045  Sum_probs=140.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CC--eEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KD--WVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~~~~~~   82 (315)
                      ...+.+..|||||+.|+..+.+   ..|++||+.+++........+......|+|||+.|+...  ++  .|+++|+.+.
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg  296 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK  296 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence            3456788999999998876532   368899998887544333344456789999999887653  44  5888898776


Q ss_pred             EEEEeecC-CceEEEEEcCCCceEEEEcC-CC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--e
Q psy9936          83 ELHCLKVL-NKVTRMEFLPYHFLLATASE-EG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--T  155 (315)
Q Consensus        83 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~  155 (315)
                      ....+... .......|+|||+.++..+. ++  .|+++|+.+++.... ..........+|+|||++|+..+. ++  .
T Consensus       297 ~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~  375 (448)
T PRK04792        297 ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNGKFN  375 (448)
T ss_pred             CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence            66555433 45677899999988776654 33  477778877764432 222223345789999998877654 33  5


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCC-C--cEEEEEccCCCCCeeEeccC-CCceeEEEccC
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD-S--QLRIWDVRNLEGPLNTFRTR-TPINNLAFSQR  227 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~  227 (315)
                      |.++|+.+++. ..+... .......|+|||++|+..+.+ +  .+.+++...  .....+..+ ..+..++|+|-
T Consensus       376 I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G--~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        376 IARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG--RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcCCCCCcCCCccCCC
Confidence            66788887754 333322 122356899999988776544 3  367777643  455555544 34788889873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.70  E-value=1.1e-14  Score=128.04  Aligned_cols=211  Identities=14%  Similarity=0.088  Sum_probs=144.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--C--CeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--K--DWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~~~~~~   82 (315)
                      ...+.+.+|+|||++|+.++..   ..|++||+.+++......+...+.+++|+|||+.|+...  +  ..|++|++.+.
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~  268 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK  268 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence            4457888999999999877643   479999999887655545556677899999998776543  3  36999999765


Q ss_pred             EEEEeecC-CceEEEEEcCCCceEEEEcCC-C--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC---e
Q psy9936          83 ELHCLKVL-NKVTRMEFLPYHFLLATASEE-G--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG---T  155 (315)
Q Consensus        83 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---~  155 (315)
                      ....+... .......|+|+|+.|+..+.. +  .|+++|+.+++.. .+..+......+.|+|+|++++.++.++   .
T Consensus       269 ~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  347 (417)
T TIGR02800       269 QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFN  347 (417)
T ss_pred             CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence            55554433 344577899999988766543 3  5888888766543 3443455667789999999998887765   8


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC---cEEEEEccCCCCCeeEeccC-CCceeEEEc
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS---QLRIWDVRNLEGPLNTFRTR-TPINNLAFS  225 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s  225 (315)
                      |.+||+.++.. ..+... .......|+|+|++|+..+.++   .+.+.+...  .....+..+ ..+..++|+
T Consensus       348 i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g--~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       348 IAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG--RFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             EEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC--ceeeECCCCCCCcCCCCCC
Confidence            99999987543 333322 2345678999999888877654   355555433  344444332 235555553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0322|consensus

Probab=99.70  E-value=6.4e-16  Score=118.96  Aligned_cols=138  Identities=16%  Similarity=0.223  Sum_probs=109.7

Q ss_pred             EEEEe-CCeEEEEeCCCC-EEEE-----------eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC--eEE--EEe
Q psy9936          66 FAVAQ-KDWVYIYDNQGI-ELHC-----------LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG--KIV--SDF  128 (315)
Q Consensus        66 l~~~~-~~~i~i~~~~~~-~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~--~~~  128 (315)
                      +++|. +|.+.+||+..+ .+..           ..|..+|.++.|.+.-..=++|+.+..+..|+++..  ...  ..+
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence            33443 799999999543 2211           225588999999876555677888888999988643  211  112


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         129 SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       129 ~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      ....-.+..+...||++++|+++.|+.|+||..++..++..+.-|.+.|++++|+|+...+|.++.|++|.+|++
T Consensus       248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            223345888999999999999999999999999999999999999999999999999999999999999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.1e-14  Score=125.42  Aligned_cols=216  Identities=10%  Similarity=-0.009  Sum_probs=141.2

Q ss_pred             CcEEEEEEcCCCCE--EE-EEcCC--CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC--C--eE--EEEeC
Q psy9936          11 FGIYRMNYTKNGRH--LL-LGGKR--GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK--D--WV--YIYDN   79 (315)
Q Consensus        11 ~~v~~~~~s~~~~~--l~-~~~~d--g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~--~i--~i~~~   79 (315)
                      ....+-+|||||+.  ++ +...+  ..|++.++.+++........+.....+|+|||+.|+...+  |  .+  .+|++
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~  264 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL  264 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence            44566789999975  32 33333  4688889988876655555566677899999998887652  2  34  34666


Q ss_pred             CC---CEEEEee-cC-CceEEEEEcCCCceEEEEc-CCCe--EEEEEccC-CeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q psy9936          80 QG---IELHCLK-VL-NKVTRMEFLPYHFLLATAS-EEGY--LSWLDTSI-GKIVSDFSAKKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        80 ~~---~~~~~~~-~~-~~v~~~~~~~~~~~l~~~~-~d~~--i~~~d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  150 (315)
                      ..   .....+. .. ......+|+|||+.|+..+ .+|.  |+++++.. +.....+..+...+....|+|||+.|+..
T Consensus       265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~  344 (428)
T PRK01029        265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC  344 (428)
T ss_pred             ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEE
Confidence            42   2223333 22 3446789999999777665 4564  44445432 23344454444566788999999988776


Q ss_pred             cCC---CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeC---CCcEEEEEccCCCCCeeEeccCCCceeEEE
Q psy9936         151 HRN---GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG---DSQLRIWDVRNLEGPLNTFRTRTPINNLAF  224 (315)
Q Consensus       151 ~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  224 (315)
                      +.+   ..|.+||+.+++.. .+......+..+.|+|||++|+..+.   ...|.++|+.++ ...........+...+|
T Consensus       345 ~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g-~~~~Lt~~~g~~~~p~W  422 (428)
T PRK01029        345 SVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK-KTRKIVIGSGEKRFPSW  422 (428)
T ss_pred             EcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-CEEEeecCCCcccCcee
Confidence            543   47999999988654 34333345678999999998875543   346888898876 54444444445788899


Q ss_pred             ccCC
Q psy9936         225 SQRG  228 (315)
Q Consensus       225 s~~g  228 (315)
                      +|-.
T Consensus       423 s~~~  426 (428)
T PRK01029        423 GAFP  426 (428)
T ss_pred             cCCC
Confidence            8853

>KOG0644|consensus

Probab=99.69  E-value=4.2e-17  Score=143.22  Aligned_cols=215  Identities=15%  Similarity=0.243  Sum_probs=163.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~   86 (315)
                      -+.|+|+.|...|.++++|+.|..++||..+++.++.... |.+.++.++.+.++.++++++ |..|++|.+. +..+..
T Consensus       190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv  269 (1113)
T KOG0644|consen  190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV  269 (1113)
T ss_pred             hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH
Confidence            5789999999999999999999999999999999988887 899999999998888888776 7899999984 444433


Q ss_pred             -eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC--------------eEEEEecc----------------CCCCe
Q psy9936          87 -LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG--------------KIVSDFSA----------------KKGKL  135 (315)
Q Consensus        87 -~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------------~~~~~~~~----------------~~~~v  135 (315)
                       ..|.+.|++++|+|-.    +.+.||++++||.+-.              ..+..+..                .....
T Consensus       270 LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~  345 (1113)
T KOG0644|consen  270 LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF  345 (1113)
T ss_pred             HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence             4577999999999954    7789999999997711              01110000                00001


Q ss_pred             EEEEEcCCCCEEE-----------EEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCE-EEEeeCCCcEEEEEc
Q psy9936         136 SVMTQNPYNACIC-----------LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTY-MATSAGDSQLRIWDV  203 (315)
Q Consensus       136 ~~~~~~p~~~~l~-----------~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~-l~~~~~d~~i~iwd~  203 (315)
                      ..++|...+-.++           ++-.+..+.+|++.++..++.+.+|...+..+.++|-... ..+++.||...|||+
T Consensus       346 ~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  346 EQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             hHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            1222222222233           3334557889999999888888999999999999997664 457899999999999


Q ss_pred             cCCCCCeeEec-cCCCceeEEEccCCe
Q psy9936         204 RNLEGPLNTFR-TRTPINNLAFSQRGL  229 (315)
Q Consensus       204 ~~~~~~~~~~~-~~~~v~~~~~s~~g~  229 (315)
                      -.+ .+++.+. +|..+..-.||+||.
T Consensus       426 ~eg-~pik~y~~gh~kl~d~kFSqdgt  451 (1113)
T KOG0644|consen  426 WEG-IPIKHYFIGHGKLVDGKFSQDGT  451 (1113)
T ss_pred             ccC-CcceeeecccceeeccccCCCCc
Confidence            988 7776654 466788889999974

>KOG1310|consensus

Probab=99.69  E-value=7.5e-16  Score=129.75  Aligned_cols=206  Identities=16%  Similarity=0.234  Sum_probs=150.7

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEee--cCcEEEEE-eCCeEEEEeC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLH--LETMFAVA-QKDWVYIYDN   79 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~-~~~~i~i~~~   79 (315)
                      +|.+ .+.|.|++|+.+|.+|++|+.|-.+.|||.-..+++..+.  |...|.++.|.|  +.++++++ +|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            4566 7889999999999999999999999999999888888776  889999999999  35566655 4889999998


Q ss_pred             CCC---------E--EEE-eecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEE-------Ee-ccCC--CCeE
Q psy9936          80 QGI---------E--LHC-LKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVS-------DF-SAKK--GKLS  136 (315)
Q Consensus        80 ~~~---------~--~~~-~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~-------~~-~~~~--~~v~  136 (315)
                      +..         +  ..+ .-|...|..++..|++ +.+.++++||+|+-||++....-.       .+ ..+.  -...
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence            521         1  111 1245778889999988 789999999999999998632111       00 0111  2357


Q ss_pred             EEEEcCCC-CEEEEEcCCCeEEEEcCCC--------Cc----------ceeEee-ccc-----------ccEEEEEECCC
Q psy9936         137 VMTQNPYN-ACICLGHRNGTVTMWSPTV--------QK----------PLASLL-CHK-----------AGIQSVAVNHT  185 (315)
Q Consensus       137 ~~~~~p~~-~~l~~~~~d~~i~i~d~~~--------~~----------~~~~~~-~~~-----------~~i~~~~~sp~  185 (315)
                      ++..+|.. .+|++|+.|-..++||.+.        +.          ++..+. +|-           ..++-+.|+|+
T Consensus       205 ~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN  284 (758)
T KOG1310|consen  205 CLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN  284 (758)
T ss_pred             eeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCC
Confidence            88899965 4899999999999999431        11          122221 221           12567899999


Q ss_pred             CCEEEEeeCCCcEEEEEccCCCCCee
Q psy9936         186 GTYMATSAGDSQLRIWDVRNLEGPLN  211 (315)
Q Consensus       186 g~~l~~~~~d~~i~iwd~~~~~~~~~  211 (315)
                      |.-|++.-..-.|+++|+.....+..
T Consensus       285 GtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  285 GTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             CcEEEEeeCCeEEEEEeecCCCCcee
Confidence            98777766666899999998733333

>KOG0642|consensus

Probab=99.69  E-value=1.2e-15  Score=128.67  Aligned_cols=193  Identities=14%  Similarity=0.166  Sum_probs=152.1

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC---------CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEE
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG---------IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLD  118 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  118 (315)
                      |...++.+.|.|....|++++ ++.|.+|+++.         ..+..+ .|.++|.|+++.+++..+++|+-||+|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            777899999999877777776 89999999821         122333 4669999999999999999999999999996


Q ss_pred             ccCC----------eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc----------------------
Q psy9936         119 TSIG----------KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP----------------------  166 (315)
Q Consensus       119 ~~~~----------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~----------------------  166 (315)
                      +...          .....+.+|.+.++.+++|+....|++++.||++++|+.....+                      
T Consensus       373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~  452 (577)
T KOG0642|consen  373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP  452 (577)
T ss_pred             cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence            5421          23345778999999999999999999999999999998653322                      


Q ss_pred             ----------------------eeEee--cc-----cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         167 ----------------------LASLL--CH-----KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       167 ----------------------~~~~~--~~-----~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                                            +..+.  ..     ...++.+.++|.+.+.+++..|+.|+++|..++ .++.....|-
T Consensus       453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~  531 (577)
T KOG0642|consen  453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHSMVAHK  531 (577)
T ss_pred             HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-ccchheeecc
Confidence                                  00000  00     124567888899999999999999999999999 8887777665


Q ss_pred             -CceeEEEccCCeEEE--EcCCEEEecCC
Q psy9936         218 -PINNLAFSQRGLLAT--SRGNIVEFLKP  243 (315)
Q Consensus       218 -~v~~~~~s~~g~~~~--~~~~~i~~~~~  243 (315)
                       .++++++.|+|.++.  +.|+.++.|+.
T Consensus       532 ~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  532 DSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             ceecceeecCCCceEEeecCCceeehhhc
Confidence             699999999996544  45899999875

>KOG0290|consensus

Probab=99.69  E-value=2.7e-15  Score=117.05  Aligned_cols=185  Identities=14%  Similarity=0.226  Sum_probs=141.5

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceE----EEEecCCCceeEEEEeecC-cEEE-EEeCCeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTL----ACEMNVMEEVYDIKWLHLE-TMFA-VAQKDWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~v~~~~~~~~~-~~l~-~~~~~~i~i~~~~~~   82 (315)
                      ..++++..|+. +-++|.+++-|-+..|||++++..    .+.+.|...|.+++|...+ ..+| +|.||.+++||+...
T Consensus       150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l  229 (364)
T KOG0290|consen  150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL  229 (364)
T ss_pred             CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence            57889999987 557889999999999999998732    3345599999999999865 3444 455999999999654


Q ss_pred             EEEEee----c-CCceEEEEEcCCC-ceEEEEcCC-CeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCC-CEEEEEcCC
Q psy9936          83 ELHCLK----V-LNKVTRMEFLPYH-FLLATASEE-GYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYN-ACICLGHRN  153 (315)
Q Consensus        83 ~~~~~~----~-~~~v~~~~~~~~~-~~l~~~~~d-~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d  153 (315)
                      +..++-    . ..+...++|++.. +++|+-..| ..|.+.|++.. .++..++.|.+.|++++|.|.. ..|.+++.|
T Consensus       230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence            333321    1 3577889999864 667765544 45999999865 6788899999999999999965 589999999


Q ss_pred             CeEEEEcCCCC------cceeEeecccccEEEEEECCC-CCEEEEeeCC
Q psy9936         154 GTVTMWSPTVQ------KPLASLLCHKAGIQSVAVNHT-GTYMATSAGD  195 (315)
Q Consensus       154 ~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d  195 (315)
                      ..+.+||+.+.      .++..+. ..+.|+.+.|+|. +.+++.+...
T Consensus       310 ~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  310 CQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             ceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            99999998753      2333333 5678999999975 6688877644

>KOG1188|consensus

Probab=99.68  E-value=2.7e-15  Score=119.47  Aligned_cols=179  Identities=13%  Similarity=0.236  Sum_probs=134.0

Q ss_pred             EEEE-EeCCeEEEEeCC-CCEEEEee-cCCceEEEEEcC--CCceEEEEcCCCeEEEEEccCCeEEEE--eccCC-CCeE
Q psy9936          65 MFAV-AQKDWVYIYDNQ-GIELHCLK-VLNKVTRMEFLP--YHFLLATASEEGYLSWLDTSIGKIVSD--FSAKK-GKLS  136 (315)
Q Consensus        65 ~l~~-~~~~~i~i~~~~-~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~-~~v~  136 (315)
                      .+|+ .+.|.|++||.. ++.+..++ +...++.+.|..  ....+.+++.||+|++||+++......  +..++ .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            3444 468999999984 45555554 345667777766  457899999999999999997654433  44454 4567


Q ss_pred             EEEEcCCCCEEEEEc----CCCeEEEEcCCCCcc-eeEe-ecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCC---
Q psy9936         137 VMTQNPYNACICLGH----RNGTVTMWSPTVQKP-LASL-LCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNL---  206 (315)
Q Consensus       137 ~~~~~p~~~~l~~~~----~d~~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~---  206 (315)
                      +++.+-.++.+++|.    .+-.|.+||+|..+. +..+ ..|...|+++.|+|. .++|++||.||-|.|||+...   
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee  201 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE  201 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence            777776788888875    367899999998765 5554 479999999999997 569999999999999999754   


Q ss_pred             CCCeeEeccCCCceeEEEccCC--e-EEEEcCCEEEecCC
Q psy9936         207 EGPLNTFRTRTPINNLAFSQRG--L-LATSRGNIVEFLKP  243 (315)
Q Consensus       207 ~~~~~~~~~~~~v~~~~~s~~g--~-~~~~~~~~i~~~~~  243 (315)
                      ..++..+...+.|..+.|..++  + +..+...+...|+.
T Consensus       202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            1345556666679999999998  3 55666777776644

>KOG1517|consensus

Probab=99.67  E-value=5.1e-15  Score=133.41  Aligned_cols=230  Identities=12%  Similarity=0.219  Sum_probs=158.8

Q ss_pred             CCcEEEEEEcC--CCCEEEEEcCCCeEEEEEc-cC----ceEEEEec--------CCCceeEEEEeec-CcEEEEEeCCe
Q psy9936          10 QFGIYRMNYTK--NGRHLLLGGKRGHVAAFDW-VR----KTLACEMN--------VMEEVYDIKWLHL-ETMFAVAQKDW   73 (315)
Q Consensus        10 ~~~v~~~~~s~--~~~~l~~~~~dg~i~v~~~-~~----~~~~~~~~--------~~~~v~~~~~~~~-~~~l~~~~~~~   73 (315)
                      ...|+.+.+-.  |..++++++.||.|+||+- .+    .+++..+.        ..+.-.-+.|... |.++++|.-..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            45677887755  4458899999999999953 22    23333222        1111133466664 55555555679


Q ss_pred             EEEEeCCCCEE-EEee--cCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCC---eEEEEeccCCCC--eEEEEEcCCC
Q psy9936          74 VYIYDNQGIEL-HCLK--VLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIG---KIVSDFSAKKGK--LSVMTQNPYN  144 (315)
Q Consensus        74 i~i~~~~~~~~-~~~~--~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~--v~~~~~~p~~  144 (315)
                      |+|||...... ..+.  ....++++.-+. .|+.+++|..||.|++||.+..   ..+...+.|...  |..+.+.+.|
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            99999965433 2233  235566665443 3689999999999999998764   356667778777  9999999877


Q ss_pred             C-EEEEEcCCCeEEEEcCCCCccee--Eeeccc--c-cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--
Q psy9936         145 A-CICLGHRNGTVTMWSPTVQKPLA--SLLCHK--A-GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--  216 (315)
Q Consensus       145 ~-~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~--~-~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--  216 (315)
                      - .|++|+.+|.|++||+|......  ++..|.  + ..+++..++....+|+|+. +.|+||++..  +.+..++.+  
T Consensus      1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G--~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG--EQLNIIKYNPG 1345 (1387)
T ss_pred             CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh--hhhcccccCcc
Confidence            6 49999999999999999742222  222332  3 5899999999999999998 8999999976  344433322  


Q ss_pred             ------CCceeEEEccCCeEEEE--cCCEEEecC
Q psy9936         217 ------TPINNLAFSQRGLLATS--RGNIVEFLK  242 (315)
Q Consensus       217 ------~~v~~~~~s~~g~~~~~--~~~~i~~~~  242 (315)
                            ..+.+++|+|--.++|.  .|+.|.++.
T Consensus      1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             cccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence                  24799999998854333  477777765

>KOG2314|consensus

Probab=99.67  E-value=1.2e-14  Score=122.80  Aligned_cols=228  Identities=14%  Similarity=0.175  Sum_probs=150.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC-----------CCeEEEEEccCceEEEEecCC---Cce-eEEEEeecCcEEEEEeCCeE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK-----------RGHVAAFDWVRKTLACEMNVM---EEV-YDIKWLHLETMFAVAQKDWV   74 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~-----------dg~i~v~~~~~~~~~~~~~~~---~~v-~~~~~~~~~~~l~~~~~~~i   74 (315)
                      +-.|.-+.|||+.+||++-+.           ...++|||+.+|...+.+...   ..+ .-+.||.|++++|.-..+.|
T Consensus       249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~si  328 (698)
T KOG2314|consen  249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSI  328 (698)
T ss_pred             CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceE
Confidence            567889999999999998653           257999999999988887631   222 34689999999999888899


Q ss_pred             EEEeCCCCEEEEee--cCCceEEEEEcCCCceEEEEcCCC-----eEEEEEccC----------------------CeEE
Q psy9936          75 YIYDNQGIELHCLK--VLNKVTRMEFLPYHFLLATASEEG-----YLSWLDTSI----------------------GKIV  125 (315)
Q Consensus        75 ~i~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~----------------------~~~~  125 (315)
                      .||+.....+...+  ....|....|+|.+++||.-....     .+.+..+.+                      |..+
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence            99987553332222  226677788888877776443210     111211111                      1100


Q ss_pred             ---------------------EEec---------cCCCCeEEEEEcCCCCEEEEEcC---CCeEEEEcCCC-C---ccee
Q psy9936         126 ---------------------SDFS---------AKKGKLSVMTQNPYNACICLGHR---NGTVTMWSPTV-Q---KPLA  168 (315)
Q Consensus       126 ---------------------~~~~---------~~~~~v~~~~~~p~~~~l~~~~~---d~~i~i~d~~~-~---~~~~  168 (315)
                                           ..+.         .-...|...+|.|.|+.+++-+.   ..++++|.+.+ .   +.+.
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence                                 0000         01234677889999997765433   35789998873 2   3344


Q ss_pred             EeecccccEEEEEECCCCCEEEEe---eCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCEEE
Q psy9936         169 SLLCHKAGIQSVAVNHTGTYMATS---AGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVE  239 (315)
Q Consensus       169 ~~~~~~~~i~~~~~sp~g~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~i~  239 (315)
                      .+.  ....+.+.|+|.|++++.+   |..|.+.++|+...+-.......|...+.+.|.|.|+|++++....+
T Consensus       489 ~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  489 ELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             hhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence            443  3566889999999998876   45678999998853122222344567899999999998887655444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.67  E-value=6.3e-14  Score=123.27  Aligned_cols=194  Identities=13%  Similarity=0.093  Sum_probs=136.5

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC----CeEEEEeCCCCEEEEe-ecCCceEEEEEcCCCceEE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK----DWVYIYDNQGIELHCL-KVLNKVTRMEFLPYHFLLA  106 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~~i~i~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~  106 (315)
                      ..|.++|...........+...+....|+|||+.|+.+..    ..|++|++.+.....+ .....+.+++|+|+|+.|+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            3688888876655555556667889999999999887652    4799999965543333 3345667799999998776


Q ss_pred             E-EcCCC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCCcceeEeecccccEEEE
Q psy9936         107 T-ASEEG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       107 ~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~~  180 (315)
                      . .+.++  .|++||+.++... .+..+........|+|+|+.|+..+. ++  .|.++|+.+++. ..+..+...+..+
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~  327 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe
Confidence            4 44443  5889998876543 34445444556789999998876554 33  688888887653 3444455667788


Q ss_pred             EECCCCCEEEEeeCCC---cEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         181 AVNHTGTYMATSAGDS---QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      .|+|+|++++.++.++   .|.+||+.++ . ...+........+.|+|||.
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~~~p~~spdg~  377 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDTGLDESPSFAPNGR  377 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCC-C-eEEccCCCCCCCceECCCCC
Confidence            9999999999888775   7889998875 3 33333333456678999994

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1963|consensus

Probab=99.67  E-value=6e-14  Score=124.31  Aligned_cols=232  Identities=13%  Similarity=0.158  Sum_probs=164.5

Q ss_pred             CCcEEEEEEcCCCC---EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEE---------------------------
Q psy9936          10 QFGIYRMNYTKNGR---HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKW---------------------------   59 (315)
Q Consensus        10 ~~~v~~~~~s~~~~---~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~---------------------------   59 (315)
                      ..++..+.+.|...   ++++++.+|.|++||...+.++.++....++..+.+                           
T Consensus        57 ~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~  136 (792)
T KOG1963|consen   57 TAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKK  136 (792)
T ss_pred             cCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccc
Confidence            56778888877543   677899999999999998887766653333333222                           


Q ss_pred             --------------------------------eecCcEEEEEeCCeEEEEeCCCCEEEE------eecCCceEEEEEcCC
Q psy9936          60 --------------------------------LHLETMFAVAQKDWVYIYDNQGIELHC------LKVLNKVTRMEFLPY  101 (315)
Q Consensus        60 --------------------------------~~~~~~l~~~~~~~i~i~~~~~~~~~~------~~~~~~v~~~~~~~~  101 (315)
                                                      ++.|.+....-+..+++|.........      ..|.-.+++.++||+
T Consensus       137 ~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn  216 (792)
T KOG1963|consen  137 LSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN  216 (792)
T ss_pred             cccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc
Confidence                                            222222222333445555553211111      123355799999999


Q ss_pred             CceEEEEcCCCeEEEEEccC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccE
Q psy9936         102 HFLLATASEEGYLSWLDTSI----GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGI  177 (315)
Q Consensus       102 ~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i  177 (315)
                      ++++|++..||.|.+|.--.    ......+.-|...|++++|+++|.+|++||..+.+.+|.+.+++ .+-++.-.++|
T Consensus       217 ~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I  295 (792)
T KOG1963|consen  217 ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPI  295 (792)
T ss_pred             cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCee
Confidence            99999999999999996322    12344566788899999999999999999999999999999987 44455677899


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc---C--------CC-ceeEEEccC-C-eEEEEcCCEEEecCC
Q psy9936         178 QSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT---R--------TP-INNLAFSQR-G-LLATSRGNIVEFLKP  243 (315)
Q Consensus       178 ~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~--------~~-v~~~~~s~~-g-~~~~~~~~~i~~~~~  243 (315)
                      ..+.+|||+.+.+....|+.|.+....+. .....+.+   .        .. .+.++++|. + .++-+..+.|+.+++
T Consensus       296 ~~i~vS~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  296 LHIVVSPDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             EEEEEcCCCCeEEEEecCceEEEEeccch-hhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence            99999999999999999999999988654 32222221   1        11 467888883 3 455566788887776

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=6.5e-14  Score=122.41  Aligned_cols=197  Identities=13%  Similarity=0.112  Sum_probs=127.6

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEE---EEe-C--CeEEEEeCCCCEEEEeec-CCceEEEEEcCCCce
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFA---VAQ-K--DWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFL  104 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~-~--~~i~i~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  104 (315)
                      ..|.+.|.+.+..............-.|+|||+.++   ++. +  ..|++.++.+.....+.. .+.....+|+|||+.
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            468888887776655444556677889999987422   332 3  368888997665555543 355567899999988


Q ss_pred             EEEEcC-CC----eEEEEEccCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEE--EEcCCC-CcceeEeec
Q psy9936         105 LATASE-EG----YLSWLDTSIG---KIVSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVT--MWSPTV-QKPLASLLC  172 (315)
Q Consensus       105 l~~~~~-d~----~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~--i~d~~~-~~~~~~~~~  172 (315)
                      |+..+. +|    .+..|++..+   ........+.......+|+|||+.|+..+ .+|...  ++++.. +.....+..
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            876543 22    2444676642   33333322233446789999999777655 456444  445542 233444544


Q ss_pred             ccccEEEEEECCCCCEEEEeeCC---CcEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         173 HKAGIQSVAVNHTGTYMATSAGD---SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      +...+....|||||++|+..+.+   ..|.+||+.++ ...........+..+.|+|||.
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~~~Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RDYQLTTSPENKESPSWAIDSL  383 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-CeEEccCCCCCccceEECCCCC
Confidence            45567789999999998877543   36999999887 5433333333578899999995

>KOG3881|consensus

Probab=99.66  E-value=6.3e-14  Score=113.63  Aligned_cols=232  Identities=14%  Similarity=0.105  Sum_probs=171.6

Q ss_pred             CCcEEEEEEcCCCC--EEEEEcCCCeEEEEEccCceEEEEec-------CCCceeEEEEeecCcEEEEEeCCeEEEEeCC
Q psy9936          10 QFGIYRMNYTKNGR--HLLLGGKRGHVAAFDWVRKTLACEMN-------VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~--~l~~~~~dg~i~v~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~   80 (315)
                      ...|..++|..+++  .+...+.+..+..+............       ...+|..+.. .|+.++++.++|.+.+|...
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEecc
Confidence            34567777776654  44444355566666666555443321       2344555543 36788888889999999886


Q ss_pred             -----CCEEEEeecCCceEEEEEcCCCc-eEEEEcCC--CeEEEEEccCCeEEEEeccC---------CCCeEEEEEcCC
Q psy9936          81 -----GIELHCLKVLNKVTRMEFLPYHF-LLATASEE--GYLSWLDTSIGKIVSDFSAK---------KGKLSVMTQNPY  143 (315)
Q Consensus        81 -----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--~~i~~~d~~~~~~~~~~~~~---------~~~v~~~~~~p~  143 (315)
                           ...+..+....++..+.-++... .+++|+..  ..+.+||+...+.+..-+.-         +-+++++.|-|.
T Consensus       134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g  213 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG  213 (412)
T ss_pred             CCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence                 45555566667778888777654 55568887  78999999987655543321         124677888887


Q ss_pred             --CCEEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE-eccCC-C
Q psy9936         144 --NACICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT-FRTRT-P  218 (315)
Q Consensus       144 --~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~-~  218 (315)
                        ...|+++..-+.+++||.+.+ +|+..+.-...+++++...|.|+++++|..-+.+..||++.+ ..+.. +..-. .
T Consensus       214 ~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-kl~g~~~kg~tGs  292 (412)
T KOG3881|consen  214 SPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-KLLGCGLKGITGS  292 (412)
T ss_pred             CCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc-eeeccccCCccCC
Confidence              779999999999999999975 688888888899999999999999999999999999999998 55555 44433 6


Q ss_pred             ceeEEEccCCeEEEEc--CCEEEecCC
Q psy9936         219 INNLAFSQRGLLATSR--GNIVEFLKP  243 (315)
Q Consensus       219 v~~~~~s~~g~~~~~~--~~~i~~~~~  243 (315)
                      ++++..+|++.+++++  |..+|+.+.
T Consensus       293 irsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  293 IRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             cceEEEcCCCceEEeeccceeEEEeec
Confidence            9999999998766654  899998876

>KOG2139|consensus

Probab=99.66  E-value=1.5e-14  Score=116.27  Aligned_cols=176  Identities=17%  Similarity=0.229  Sum_probs=130.0

Q ss_pred             CceeEEEEeecCcEEEEE-eCCeEEEEeCCCCEEEEeecC--CceEEEEEcCCC-ceEEEEcCCCeEEEEEccCC----e
Q psy9936          52 EEVYDIKWLHLETMFAVA-QKDWVYIYDNQGIELHCLKVL--NKVTRMEFLPYH-FLLATASEEGYLSWLDTSIG----K  123 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~----~  123 (315)
                      -.+..++|++.-..++++ .|..|++|+-.......+++.  ..|.+++|-|.+ ..|++|+.. -|.+|.....    .
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r  177 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR  177 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence            357788999865445555 489999999876666666654  789999999974 567777765 5889976421    1


Q ss_pred             E----------EEEeccCCCCeEEEEEcCCCCEEEEEcC-CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEe
Q psy9936         124 I----------VSDFSAKKGKLSVMTQNPYNACICLGHR-NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       124 ~----------~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~  192 (315)
                      .          +....+| .+|++|.|++||..+++++. |..|.|||.+++..+.......+.++-+.|||||.+|..+
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            1          1112234 57999999999999998875 6789999999987654443345778899999999999999


Q ss_pred             eCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         193 AGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       193 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      .-|+..++|+.........-.-....|...+|+|+|.
T Consensus       257 t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGS  293 (445)
T ss_pred             cccceeeeehhcccceecceeccCCceeeeeecCCCC
Confidence            9999999996544313333333444799999999993

>KOG1310|consensus

Probab=99.65  E-value=1.2e-15  Score=128.58  Aligned_cols=197  Identities=15%  Similarity=0.268  Sum_probs=144.7

Q ss_pred             Eec-CCCceeEEEEeecCcEEEEEeC-CeEEEEeC-CCCEEEEe--ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEc
Q psy9936          47 EMN-VMEEVYDIKWLHLETMFAVAQK-DWVYIYDN-QGIELHCL--KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDT  119 (315)
Q Consensus        47 ~~~-~~~~v~~~~~~~~~~~l~~~~~-~~i~i~~~-~~~~~~~~--~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~  119 (315)
                      .+. |.+.|+++.|+.+|.+|++|+| -.+.|||. ..+.++.+  +|...|.++.|-|.  ..++++|..|..|++||+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            344 8999999999999999999985 58999998 44555554  46689999999995  568999999999999999


Q ss_pred             cC----------CeEEEEeccCCCCeEEEEEcCCC-CEEEEEcCCCeEEEEcCCCCcc----------eeEeecccccEE
Q psy9936         120 SI----------GKIVSDFSAKKGKLSVMTQNPYN-ACICLGHRNGTVTMWSPTVQKP----------LASLLCHKAGIQ  178 (315)
Q Consensus       120 ~~----------~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~i~  178 (315)
                      ..          ......+..|...|..++..|++ +.+.++++||+|+-||++....          +..+...--...
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence            84          13444566788889999999988 6899999999999999986321          111111223567


Q ss_pred             EEEECCCC-CEEEEeeCCCcEEEEEccCCC-----------------CCeeEec-cC------------CCceeEEEccC
Q psy9936         179 SVAVNHTG-TYMATSAGDSQLRIWDVRNLE-----------------GPLNTFR-TR------------TPINNLAFSQR  227 (315)
Q Consensus       179 ~~~~sp~g-~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~-~~------------~~v~~~~~s~~  227 (315)
                      ++..+|.. .+||+|+.|-..++||.+...                 .++..+. .|            ..++-+.|+|+
T Consensus       205 ~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN  284 (758)
T KOG1310|consen  205 CLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN  284 (758)
T ss_pred             eeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCC
Confidence            89999974 589999999999999954210                 1122221 11            12567889999


Q ss_pred             C-eEEEE-cCCEEEecCC
Q psy9936         228 G-LLATS-RGNIVEFLKP  243 (315)
Q Consensus       228 g-~~~~~-~~~~i~~~~~  243 (315)
                      | .++++ ++..|..+++
T Consensus       285 GtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  285 GTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             CcEEEEeeCCeEEEEEee
Confidence            8 35555 4556777766

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2e-13  Score=120.35  Aligned_cols=193  Identities=7%  Similarity=0.023  Sum_probs=132.1

Q ss_pred             eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--C--CeEEEEeCCCCEEEEeecC-CceEEEEEcCCCceEEE
Q psy9936          33 HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--K--DWVYIYDNQGIELHCLKVL-NKVTRMEFLPYHFLLAT  107 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~  107 (315)
                      .|.++|.+.+.......+...+....|+|||+.|+..+  +  ..|++|++.+.....+... +.+....|+|+|+.|+.
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            47788887766555556777889999999999887764  2  3699999976655554433 44567899999987764


Q ss_pred             -EcCCC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCCcceeEeecccccEEEEE
Q psy9936         108 -ASEEG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQKPLASLLCHKAGIQSVA  181 (315)
Q Consensus       108 -~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~  181 (315)
                       .+.+|  .|++||+.++... .+..+........|+|||+.|+..+. ++  .|.++|+.+++.. .+...........
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~  337 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPR  337 (430)
T ss_pred             EEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceE
Confidence             44444  5888899877643 45545555667899999997766543 33  6777888777643 3322223334678


Q ss_pred             ECCCCCEEEEeeCC-C--cEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         182 VNHTGTYMATSAGD-S--QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       182 ~sp~g~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      |+|+|++|+..+.+ +  .|.+||+.++ .. ..+..........|+|||.
T Consensus       338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~~~~~~~p~~spdg~  386 (430)
T PRK00178        338 LSADGKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTDTSLDESPSVAPNGT  386 (430)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEECCCC-CE-EEccCCCCCCCceECCCCC
Confidence            99999999877653 3  4888998876 43 3333222334679999995

>KOG4227|consensus

Probab=99.63  E-value=1.2e-13  Score=112.16  Aligned_cols=243  Identities=19%  Similarity=0.185  Sum_probs=176.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCC---ceeEEEEeecCcEEEEEe-CCeEEEEeCCC----
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME---EVYDIKWLHLETMFAVAQ-KDWVYIYDNQG----   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~----   81 (315)
                      ...|.|++|.....++.+|..+++|...|+++.+.+..+.+..   .|+.+.-+|..+.|++.+ ++.|.+||+..    
T Consensus       105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~  184 (609)
T KOG4227|consen  105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP  184 (609)
T ss_pred             ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence            3789999999999999999999999999999999988888665   899999999766666655 79999999832    


Q ss_pred             CEEEEee-cCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCe-EEEEe---ccC---CCCeEEEEEcCCCCEEEEEcC
Q psy9936          82 IELHCLK-VLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGK-IVSDF---SAK---KGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        82 ~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~-~~~~~---~~~---~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      ..+.++. .......+.|+|.. .+|++.+..+-+.+||.+... ++...   .+-   ...-.++.|+|+|+.|++--.
T Consensus       185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR  264 (609)
T KOG4227|consen  185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR  264 (609)
T ss_pred             CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence            2233333 33667889999974 678888888999999987542 11111   111   112356789999998887766


Q ss_pred             CCeEEEEcCCCCcc-eeEeeccc-------ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC-----------------
Q psy9936         153 NGTVTMWSPTVQKP-LASLLCHK-------AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE-----------------  207 (315)
Q Consensus       153 d~~i~i~d~~~~~~-~~~~~~~~-------~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~-----------------  207 (315)
                      ...-.+||+-+..+ +..+. |.       ..+.+++|..|.. +++|+.+-.|++|.+....                 
T Consensus       265 ~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~  342 (609)
T KOG4227|consen  265 GKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS  342 (609)
T ss_pred             cCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCch
Confidence            66677888876433 33333 22       2466778876654 8999999999999885320                 


Q ss_pred             -----CCeeEeccCCC-ceeEEEccCCeEEEEc--CCEEEecCCCceeecccccc
Q psy9936         208 -----GPLNTFRTRTP-INNLAFSQRGLLATSR--GNIVEFLKPPEINFEPRRKA  254 (315)
Q Consensus       208 -----~~~~~~~~~~~-v~~~~~s~~g~~~~~~--~~~i~~~~~~~~~~~~~~~~  254 (315)
                           ..+..+++|.. ++.+.|+|...++++.  .+.+++|.+..+-|+-|+.+
T Consensus       343 ~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~~D~~~  397 (609)
T KOG4227|consen  343 EIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWSYDLPF  397 (609)
T ss_pred             hheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCCcccCCcc
Confidence                 12344566664 6899999988655543  67899999977777766544

>KOG1240|consensus

Probab=99.63  E-value=1.2e-13  Score=126.40  Aligned_cols=236  Identities=14%  Similarity=0.190  Sum_probs=163.9

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCc-------eEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRK-------TLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~   79 (315)
                      ...+..++.++ ++.++++|+.||+|++|++..-       +...++. ...++.++.+.+.+..+|+++ ||.|.+.++
T Consensus      1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred             cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence            45566777766 4489999999999999997531       2233444 556789999999999888886 899999988


Q ss_pred             CC---CEEEE-------eecCCceEE-EEEcCC-C-ceEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCC
Q psy9936          80 QG---IELHC-------LKVLNKVTR-MEFLPY-H-FLLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYN  144 (315)
Q Consensus        80 ~~---~~~~~-------~~~~~~v~~-~~~~~~-~-~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~  144 (315)
                      +.   .....       ....+.+.+ -+|... + ..++.+...+.|..||+++.....+++  ...+.|++++.+|.+
T Consensus      1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC 1207 (1431)
T ss_pred             cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCc
Confidence            53   11111       111233333 334332 2 378888889999999998765544443  234679999999999


Q ss_pred             CEEEEEcCCCeEEEEcCCCCcceeEee-cccccEEEEEECCCC---CEEEEee--CCCcEEEEEccCCCCCeeEeccCC-
Q psy9936         145 ACICLGHRNGTVTMWSPTVQKPLASLL-CHKAGIQSVAVNHTG---TYMATSA--GDSQLRIWDVRNLEGPLNTFRTRT-  217 (315)
Q Consensus       145 ~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~sp~g---~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~-  217 (315)
                      +++++|...|.+.+||+|-+.++..+. ++..+|..+..+|-.   .+.++++  ..+.|.+|++.++ .+-..+-... 
T Consensus      1208 ~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g-~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1208 NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG-LRQTVLWASDG 1286 (1431)
T ss_pred             eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-cceEEEEcCCC
Confidence            999999999999999999888888776 455788888888753   3555444  4677999999988 5444432220 


Q ss_pred             --------------------CceeEEEccCCe-EEEEcCCEEEecCCCce
Q psy9936         218 --------------------PINNLAFSQRGL-LATSRGNIVEFLKPPEI  246 (315)
Q Consensus       218 --------------------~v~~~~~s~~g~-~~~~~~~~i~~~~~~~~  246 (315)
                                          .+.+..-.+++. +.++.|..|+.|++..-
T Consensus      1287 ~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1287 APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence                                122333334454 55566899999998443

>KOG2321|consensus

Probab=99.63  E-value=5.6e-14  Score=119.19  Aligned_cols=231  Identities=15%  Similarity=0.198  Sum_probs=165.0

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEee-cCcEEEEEeCCeEEEEeCC-C
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH-LETMFAVAQKDWVYIYDNQ-G   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~i~i~~~~-~   81 (315)
                      |+..+ ...|.-.-++.|-..++.-..|.+|-+..- .|. ...+..+..-.+++++. ...++++|+...|+-++++ |
T Consensus        88 FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~-hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG  165 (703)
T KOG2321|consen   88 FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGR-HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG  165 (703)
T ss_pred             eeecccccceeEEEeccchhhheEeecCceeeehhh-cCe-eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccc
Confidence            33344 344444445555555666666777766652 222 22223333445666654 5567777778889999994 5


Q ss_pred             CEEEEeecC-CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc------CCC-----CeEEEEEcCCCCEEEE
Q psy9936          82 IELHCLKVL-NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA------KKG-----KLSVMTQNPYNACICL  149 (315)
Q Consensus        82 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~~~-----~v~~~~~~p~~~~l~~  149 (315)
                      .-+..+... +.++++..++...+|++|+.+|.|..||.++...+..+..      |.+     .|+++.|+.+|-.+++
T Consensus       166 rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV  245 (703)
T KOG2321|consen  166 RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV  245 (703)
T ss_pred             ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe
Confidence            555555544 8899999999999999999999999999998766655532      333     3999999999999999


Q ss_pred             EcCCCeEEEEcCCCCcceeEee-cccccEEEEEECCCC--CEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEcc
Q psy9936         150 GHRNGTVTMWSPTVQKPLASLL-CHKAGIQSVAVNHTG--TYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQ  226 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~sp~g--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  226 (315)
                      |..+|.+.|||+++.+++..-. +...+|..+.|.+.+  ..+++. ....++|||-.++ ++...+....+++.+|+-|
T Consensus       246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k~~asiEpt~~lND~C~~p  323 (703)
T KOG2321|consen  246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG-KPMASIEPTSDLNDFCFVP  323 (703)
T ss_pred             eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccC-CceeeccccCCcCceeeec
Confidence            9999999999999998876443 334689999998773  344443 3447999999999 9999888888899999999


Q ss_pred             CC-eEEEEc-CCEEE
Q psy9936         227 RG-LLATSR-GNIVE  239 (315)
Q Consensus       227 ~g-~~~~~~-~~~i~  239 (315)
                      ++ +++.+. ++.+.
T Consensus       324 ~sGm~f~Ane~~~m~  338 (703)
T KOG2321|consen  324 GSGMFFTANESSKMH  338 (703)
T ss_pred             CCceEEEecCCCcce
Confidence            86 544443 44444

>KOG0649|consensus

Probab=99.63  E-value=6.4e-13  Score=101.54  Aligned_cols=228  Identities=13%  Similarity=0.151  Sum_probs=155.0

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE------EEEe--c-C-----CCceeEEEEeec-CcEEE
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL------ACEM--N-V-----MEEVYDIKWLHL-ETMFA   67 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~------~~~~--~-~-----~~~v~~~~~~~~-~~~l~   67 (315)
                      ++..+. +++|+.++|.  ..+|++++ ||.|+-|.+.....      +...  . +     -..|+++...|. +.+|.
T Consensus        55 iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~  131 (325)
T KOG0649|consen   55 IVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF  131 (325)
T ss_pred             eeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence            444455 8899999998  34677665 59999987653221      1111  1 1     135788888885 56666


Q ss_pred             EEeCCeEEEEeCCCCEEEE-e-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC----------CCe
Q psy9936          68 VAQKDWVYIYDNQGIELHC-L-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK----------GKL  135 (315)
Q Consensus        68 ~~~~~~i~i~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~v  135 (315)
                      .++|+.++-||++...+.. + .|...+.++.--.....+++|++||++++||+++++.+..+....          ..|
T Consensus       132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi  211 (325)
T KOG0649|consen  132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI  211 (325)
T ss_pred             ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence            7789999999997655543 3 466899999885555678999999999999999999888775321          224


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       136 ~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      .+++  -+..+|++|+ ...+.+|.+++.++...+. -.+++..+.|..+  .+++++..+.+.-|.+..  ..-..++.
T Consensus       212 gala--~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G--vl~a~ip~  283 (325)
T KOG0649|consen  212 GALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG--VLQANIPV  283 (325)
T ss_pred             EEEe--ccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeecc--EEEEeccC
Confidence            4444  4556787765 4579999999999888886 5678888888544  577777777899998765  33333333


Q ss_pred             CC-CceeEEEccCC-eE--EEEcCCEEEecC
Q psy9936         216 RT-PINNLAFSQRG-LL--ATSRGNIVEFLK  242 (315)
Q Consensus       216 ~~-~v~~~~~s~~g-~~--~~~~~~~i~~~~  242 (315)
                      .+ ..++..|+..- .+  +++..+.+.++.
T Consensus       284 ~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  284 ESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             CccceeeecccCCceEEEEecccceeeeeee
Confidence            33 45666665443 23  333345555443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.6e-13  Score=119.49  Aligned_cols=193  Identities=10%  Similarity=0.059  Sum_probs=129.2

Q ss_pred             eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--C--CeEEEEeCCCCEEEEeecC-CceEEEEEcCCCceEEE
Q psy9936          33 HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--K--DWVYIYDNQGIELHCLKVL-NKVTRMEFLPYHFLLAT  107 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~  107 (315)
                      .|.++|.+..+..........+.+..|+|||+.|+..+  +  ..|++||+.+.....+... .......|+|+|+.|+.
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence            67777877766555555777889999999999888764  2  2699999976554444432 34457899999997765


Q ss_pred             -EcCCCe--EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCCcceeEeecccccEEEEE
Q psy9936         108 -ASEEGY--LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQKPLASLLCHKAGIQSVA  181 (315)
Q Consensus       108 -~~~d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~  181 (315)
                       .+.++.  |+++|+.+++. ..+..+.......+|+|||+.|+..+. ++  .|.++|+.+++.. .+..........+
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~  356 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGS  356 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCee
Confidence             455554  88889887754 344445555677899999998766543 33  5777788777543 3322223334579


Q ss_pred             ECCCCCEEEEeeCC-C--cEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         182 VNHTGTYMATSAGD-S--QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       182 ~sp~g~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      |+|||++|+..+.+ +  .|.++|+.++ .. ..+..........|+|||.
T Consensus       357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~~-~~lt~~~~d~~ps~spdG~  405 (448)
T PRK04792        357 ITPDGRSMIMVNRTNGKFNIARQDLETG-AM-QVLTSTRLDESPSVAPNGT  405 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCCC-Ce-EEccCCCCCCCceECCCCC
Confidence            99999998876553 3  3566777765 33 3333222234568999994

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.62  E-value=4.8e-13  Score=111.33  Aligned_cols=209  Identities=9%  Similarity=0.055  Sum_probs=160.2

Q ss_pred             EcCCCCEEEEEcCCCeEEEEEccCceEEEE-ec--CC---------CceeEEE-Eee-cCcEEEEEeCCeEEEEeCCCCE
Q psy9936          18 YTKNGRHLLLGGKRGHVAAFDWVRKTLACE-MN--VM---------EEVYDIK-WLH-LETMFAVAQKDWVYIYDNQGIE   83 (315)
Q Consensus        18 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~--~~---------~~v~~~~-~~~-~~~~l~~~~~~~i~i~~~~~~~   83 (315)
                      .+.||+.|+. +..|.|++||.++.++... +.  ..         .+..-+. |++ +|.+++..+.|...+.+.....
T Consensus       274 ~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~  352 (668)
T COG4946         274 ANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY  352 (668)
T ss_pred             cCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence            3568888876 4578899999887654321 11  00         0111122 444 6899999999999999987777


Q ss_pred             EEEeecCCceEEEEEcCCCceEEEEcCCC-eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          84 LHCLKVLNKVTRMEFLPYHFLLATASEEG-YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      ...+.+...|.-..+.-+++-++.|..|| .+-+||..+++. ..+...-+.|.+++.+|+|++++++.....+.++|++
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            77788888899888888888899999999 899999987654 4455667789999999999999999999999999999


Q ss_pred             CCcceeEeecccccEEEEEECCCCCEEEEeeCCC----cEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS----QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      +++....-+...+-|+.+.|||+++++|-+-.+|    .|+++|+.++ +..........=.+.+|.|||+
T Consensus       432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vTT~ta~DfsPaFD~d~r  501 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVTTPTAYDFSPAFDPDGR  501 (668)
T ss_pred             CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEecCCcccccCcccCCCCc
Confidence            9976544445567899999999999999887666    6999999986 4444333333357789999994

>KOG4547|consensus

Probab=99.61  E-value=2.7e-13  Score=115.47  Aligned_cols=185  Identities=14%  Similarity=0.193  Sum_probs=150.4

Q ss_pred             cCCCCEEEEEcCCCeEEEEEccCceEEEEecC----CCceeEEEEe------e--------------cCcEEEEEe-CCe
Q psy9936          19 TKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV----MEEVYDIKWL------H--------------LETMFAVAQ-KDW   73 (315)
Q Consensus        19 s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~----~~~v~~~~~~------~--------------~~~~l~~~~-~~~   73 (315)
                      .|-+.++|....||.++||+...++....+..    .+...+..|.      |              +...++-|. .|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            35567999999999999999999998777652    3445555553      1              112455554 789


Q ss_pred             EEEEeCCCCEEEEe----ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          74 VYIYDNQGIELHCL----KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        74 i~i~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      |.+|+..+.++...    .|.+.|.++.++.+-..|.+++.|+.+..|+......++.+......+.+++.+|||..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            99999976665542    36689999999999889999999999999999999999999888888999999999999998


Q ss_pred             EcCCCeEEEEcCCCCcceeEeecccccEEEEEECCC-----CCEEEEe-eCCCcEEEEEccC
Q psy9936         150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHT-----GTYMATS-AGDSQLRIWDVRN  205 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~-----g~~l~~~-~~d~~i~iwd~~~  205 (315)
                      ++  +.|.+||+++.+.+.+|.+|.++|.+++|--+     |.++.++ ..+.-+.+|-+..
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            86  68999999999999999999999999999876     6666654 4455678887765

>KOG0280|consensus

Probab=99.61  E-value=6.2e-13  Score=104.23  Aligned_cols=217  Identities=16%  Similarity=0.192  Sum_probs=155.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC------------CCeEEEEEccCceEEE--Eec--CCCceeEEEEee---cCc-EEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK------------RGHVAAFDWVRKTLAC--EMN--VMEEVYDIKWLH---LET-MFAVA   69 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~------------dg~i~v~~~~~~~~~~--~~~--~~~~v~~~~~~~---~~~-~l~~~   69 (315)
                      .-++.+++-.++  .||+|++            .|.+.+|++...+...  ++.  ....++.+.|..   +|. .++.+
T Consensus        14 ~~~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a   91 (339)
T KOG0280|consen   14 PVPICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDA   91 (339)
T ss_pred             CCCccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeec
Confidence            444555544443  6776643            3678899887665433  222  345678888875   454 22222


Q ss_pred             -eCCeEEEEeCCCCEEE-EeecC-------CceEEEEEcCCCceEEEEcCCCeEEEEEccCCe--EEEEeccCCCCeEEE
Q psy9936          70 -QKDWVYIYDNQGIELH-CLKVL-------NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK--IVSDFSAKKGKLSVM  138 (315)
Q Consensus        70 -~~~~i~i~~~~~~~~~-~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~  138 (315)
                       ..|.|.++.....+-. .+...       ....++.|++.+..++++..+|.+.+.+...+.  .++..+.|.-.+...
T Consensus        92 ~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta  171 (339)
T KOG0280|consen   92 HARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA  171 (339)
T ss_pred             cccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeee
Confidence             3789999987432211 11111       124678899999999999999999976655553  334778899888888


Q ss_pred             EEcC-CCCEEEEEcCCCeEEEEcCCC-CcceeE-eecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         139 TQNP-YNACICLGHRNGTVTMWSPTV-QKPLAS-LLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       139 ~~~p-~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      .|+. +.+++++|++|+.+..||+|. ++.+.. .+.|...|.+|.-+|. +.+++||+.|-.|++||.++..+|+..-.
T Consensus       172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~  251 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK  251 (339)
T ss_pred             ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence            8876 446899999999999999993 344433 4468899999988865 77999999999999999997768888887


Q ss_pred             cCCCceeEEEccCC
Q psy9936         215 TRTPINNLAFSQRG  228 (315)
Q Consensus       215 ~~~~v~~~~~s~~g  228 (315)
                      ..++|+.+.++|.-
T Consensus       252 v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEI  265 (339)
T ss_pred             cccceEEEEecchh
Confidence            77889999999954

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.59  E-value=1.2e-11  Score=105.59  Aligned_cols=195  Identities=13%  Similarity=0.160  Sum_probs=134.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC-CCeEEEEEccC-ceEEEE---ecC-----------CCceeEEEEeecCcEEEEEe--C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK-RGHVAAFDWVR-KTLACE---MNV-----------MEEVYDIKWLHLETMFAVAQ--K   71 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~-~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~~~~--~   71 (315)
                      ......++++|++++|+++.. +|.|.++++.. +.+...   +.+           .....++.|+|+++++++..  .
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            456678999999999988764 78999999976 443322   211           23478899999999988876  4


Q ss_pred             CeEEEEeCCCCE--EEE-----eecCCceEEEEEcCCCceEEEEc-CCCeEEEEEcc--CCe--EEEEeccC------CC
Q psy9936          72 DWVYIYDNQGIE--LHC-----LKVLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTS--IGK--IVSDFSAK------KG  133 (315)
Q Consensus        72 ~~i~i~~~~~~~--~~~-----~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~--~~~--~~~~~~~~------~~  133 (315)
                      +.|++|+++...  +..     +........+.|+|+++++++.. .++.|.+|++.  ++.  .+..+...      ..
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence            689999985332  322     23346789999999998876664 57789999988  443  22222211      12


Q ss_pred             CeEEEEEcCCCCEEEEEc-CCCeEEEEcCCC--Cc--ceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEcc
Q psy9936         134 KLSVMTQNPYNACICLGH-RNGTVTMWSPTV--QK--PLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVR  204 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~  204 (315)
                      ....++++|||++|+++. ..+.|.+|+++.  ++  .+..+.........++++|+|++|+++. .++.|.+|++.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            578899999999887765 467899999842  32  2333433345578999999999998887 45689999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334|consensus

Probab=99.59  E-value=5.3e-14  Score=117.09  Aligned_cols=266  Identities=13%  Similarity=0.205  Sum_probs=195.7

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeec---CcEEEEEeCCeEEEEe
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHL---ETMFAVAQKDWVYIYD   78 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~---~~~l~~~~~~~i~i~~   78 (315)
                      ..|.. .+.|..+.|+..|..|++|+.|..|.+||+..++....+.  |...|....|.|.   ..++.++.||.+++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            34555 7889999999999999999999999999999988877776  7778888888884   3344445599999877


Q ss_pred             C--CCCE---EEEeecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEe---ccCCC---CeEEEEEcCCCC-
Q psy9936          79 N--QGIE---LHCLKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDF---SAKKG---KLSVMTQNPYNA-  145 (315)
Q Consensus        79 ~--~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~---~v~~~~~~p~~~-  145 (315)
                      +  .+..   ....+|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+   ..+..   ..+.++.+|... 
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            6  2221   2234577999999999975 57899999999999999887544333   22333   467889999665 


Q ss_pred             EEEEEcCCCeEEEEcCCCCc------ceeEeec------ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC------
Q psy9936         146 CICLGHRNGTVTMWSPTVQK------PLASLLC------HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE------  207 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~------~~~~~~~------~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~------  207 (315)
                      .+++|+.|..+++||.+.-.      .+.++..      ....|++++++.++.-|.++..|-.|+++.-..+.      
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence            89999999999999987421      2333322      23578999999888877788888889999543221      


Q ss_pred             -----CCee-EeccCC---CceeEEE-ccCCeEEEEc--CCEEEecCC----------------CceeecccccccccCC
Q psy9936         208 -----GPLN-TFRTRT---PINNLAF-SQRGLLATSR--GNIVEFLKP----------------PEINFEPRRKANKAGG  259 (315)
Q Consensus       208 -----~~~~-~~~~~~---~v~~~~~-s~~g~~~~~~--~~~i~~~~~----------------~~~~~~~~~~~~~~~~  259 (315)
                           ..+. .+++|.   .|-.+.| -|...|++++  .|.|-+|+-                +++.-+|---.||+.+
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG  455 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG  455 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence                 1112 255665   3666665 4556566554  578999976                6777778888899999


Q ss_pred             cchhhhhhhhh
Q psy9936         260 SVQRAKVKKIV  270 (315)
Q Consensus       260 ~~~~~~~~~~~  270 (315)
                      .+.-+|.|...
T Consensus       456 id~DVKIWTP~  466 (559)
T KOG1334|consen  456 IDHDVKIWTPL  466 (559)
T ss_pred             CccceeeecCC
Confidence            99888887664

>KOG0974|consensus

Probab=99.59  E-value=9e-14  Score=125.30  Aligned_cols=193  Identities=13%  Similarity=0.098  Sum_probs=155.7

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCcee-----EEEEeecCcEEEEEe-CCeEEEEeC--CCC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVY-----DIKWLHLETMFAVAQ-KDWVYIYDN--QGI   82 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~-~~~i~i~~~--~~~   82 (315)
                      +.|....+.-+...++.++.+..+.+||...+.....+.+.+.+.     -+.++++.-++++++ -+.|.+|+.  +..
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            334444455566788888888899999999888877777665432     233455666777776 689999998  334


Q ss_pred             EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          83 ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS-DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      ......|.+.+.++.|+-+|.++++.++|.++++|++.+.+... ..-+|+.++..++|.|+  .+++++.|.+.++|+.
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            44567788999999999999999999999999999999887665 55579999999999998  8999999999999976


Q ss_pred             CCCcceeEeeccc-ccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         162 TVQKPLASLLCHK-AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       162 ~~~~~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      + +..+..+..|. ..|..++..++...++|++.|+.+++||+.+.
T Consensus       246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            5 55566777776 47899999999999999999999999998753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3e-12  Score=111.30  Aligned_cols=189  Identities=9%  Similarity=0.003  Sum_probs=129.2

Q ss_pred             cEEEEEEcCCCCE-EEEEcC---CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe----CCeEEEEeCCCCE
Q psy9936          12 GIYRMNYTKNGRH-LLLGGK---RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ----KDWVYIYDNQGIE   83 (315)
Q Consensus        12 ~v~~~~~s~~~~~-l~~~~~---dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~   83 (315)
                      ......|||||+. ++..+.   +..|+++|+.+++........+......|+|||+.++...    +..|+++++.+..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            5678899999985 554433   3579999999988766655566667788999998777653    3579999987766


Q ss_pred             EEEeecCC-ceEEEEEcCCCceEEEEcCC-C--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC------
Q psy9936          84 LHCLKVLN-KVTRMEFLPYHFLLATASEE-G--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN------  153 (315)
Q Consensus        84 ~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d------  153 (315)
                      ...+.... ......|+|||+.|+..+.. +  .|+++|+.+++..+.... ...  ...|+|||+.|+.....      
T Consensus       269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccC
Confidence            66655443 24567899999877766532 2  588888887765443221 111  24899999988766543      


Q ss_pred             ---CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC---cEEEEEccC
Q psy9936         154 ---GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS---QLRIWDVRN  205 (315)
Q Consensus       154 ---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---~i~iwd~~~  205 (315)
                         ..|.+.|+.++.. ..+... .......|+|||+.++..+.++   .+.+.++..
T Consensus       346 ~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        346 KNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence               3788889987753 344422 2334689999999887765433   366666655

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.57  E-value=4.3e-11  Score=102.22  Aligned_cols=233  Identities=15%  Similarity=0.146  Sum_probs=151.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC----CCeEEEEEccC--ceE--EEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK----RGHVAAFDWVR--KTL--ACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~----dg~i~v~~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~   78 (315)
                      ...+..++++|++++|.+...    .+.|..|.+..  +++  +.... .......++++|++++|+++.  +|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            455677889999998887755    57899998775  343  22333 334566789999999999986  78999999


Q ss_pred             CCC-CEEEE----eec-----------CCceEEEEEcCCCceEEEEcC-CCeEEEEEccCCe--EE--EEec-cCCCCeE
Q psy9936          79 NQG-IELHC----LKV-----------LNKVTRMEFLPYHFLLATASE-EGYLSWLDTSIGK--IV--SDFS-AKKGKLS  136 (315)
Q Consensus        79 ~~~-~~~~~----~~~-----------~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~--~~--~~~~-~~~~~v~  136 (315)
                      +.. ..+..    +.+           .....++.++|+++++++... ...|.+|++....  ..  ..+. .......
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            853 22221    211           145688999999998877643 4479999997654  22  2222 2334578


Q ss_pred             EEEEcCCCCEEEEEc-CCCeEEEEcCC--CCc--ceeEeecc------cccEEEEEECCCCCEEEEee-CCCcEEEEEcc
Q psy9936         137 VMTQNPYNACICLGH-RNGTVTMWSPT--VQK--PLASLLCH------KAGIQSVAVNHTGTYMATSA-GDSQLRIWDVR  204 (315)
Q Consensus       137 ~~~~~p~~~~l~~~~-~d~~i~i~d~~--~~~--~~~~~~~~------~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~  204 (315)
                      .+.|+|+++++++.. .++.|.++++.  ++.  .+..+...      ......|.++|||++|+++. ..++|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            899999999876654 57889999988  332  22222211      12578899999999887765 56689999994


Q ss_pred             CCCCCe---eEeccCC-CceeEEEccCCe-EEEE--cCCEEEecC
Q psy9936         205 NLEGPL---NTFRTRT-PINNLAFSQRGL-LATS--RGNIVEFLK  242 (315)
Q Consensus       205 ~~~~~~---~~~~~~~-~v~~~~~s~~g~-~~~~--~~~~i~~~~  242 (315)
                      .....+   ..+.... ..+.++++|+|. ++++  .++.|.+++
T Consensus       276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence            321222   3333322 479999999995 3333  366787765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314|consensus

Probab=99.56  E-value=1e-12  Score=111.31  Aligned_cols=245  Identities=14%  Similarity=0.140  Sum_probs=176.3

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe------------CCeEEEEeCC
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ------------KDWVYIYDNQ   80 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~~~i~i~~~~   80 (315)
                      =+-+.|||-|.||++-...| |.+|--.+...++.+.|++ |.-+.|||+.++|++-+            ...+.|||+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            36689999999999988776 9999877776666676664 88899999999999742            1479999994


Q ss_pred             -CCEEEEeec---CCce-EEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC---
Q psy9936          81 -GIELHCLKV---LNKV-TRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR---  152 (315)
Q Consensus        81 -~~~~~~~~~---~~~v-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---  152 (315)
                       |.....+..   ...+ .-+.||.|++++|....+ +|.||+..+..++-.-......|....|+|.+++||.=..   
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence             444444433   2222 357899999999988775 7999997764443332334456888999999998875332   


Q ss_pred             --CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee----------CCCcEEEEEccCCCCCeeEeccCCCce
Q psy9936         153 --NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA----------GDSQLRIWDVRNLEGPLNTFRTRTPIN  220 (315)
Q Consensus       153 --d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~v~  220 (315)
                        -..+.+..+.+.+.+++-.-|.-.-..+.|-.+|.||+.--          .-..+.|+.++..+-++..+.....|.
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi  449 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI  449 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence              24677888887777776665655556788999999998642          112477888887657788888888899


Q ss_pred             eEEEccCC-eEEEEc----CCEEEecCC------------------CceeecccccccccCCc
Q psy9936         221 NLAFSQRG-LLATSR----GNIVEFLKP------------------PEINFEPRRKANKAGGS  260 (315)
Q Consensus       221 ~~~~s~~g-~~~~~~----~~~i~~~~~------------------~~~~~~~~~~~~~~~~~  260 (315)
                      .++|.|.| ++++-.    ..++..+.+                  +.+.|+|.|++++.+..
T Consensus       450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l  512 (698)
T KOG2314|consen  450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAAL  512 (698)
T ss_pred             eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEe
Confidence            99999999 333322    233443322                  78999999998876643

>KOG1354|consensus

Probab=99.55  E-value=2.8e-13  Score=108.32  Aligned_cols=231  Identities=14%  Similarity=0.219  Sum_probs=157.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-----EEEEec-------------CCCceeEEEEeecC---cEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-----LACEMN-------------VMEEVYDIKWLHLE---TMFAV   68 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~-------------~~~~v~~~~~~~~~---~~l~~   68 (315)
                      .+-|.++.|...|.+||+|..+|.|.++.-+...     ....+.             ..+.|+.+.|.+++   .+|++
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            5668999999999999999999999999643211     122221             22468899999875   46777


Q ss_pred             EeCCeEEEEeCCCCEE---------------------EEe-----------------ecCCceEEEEEcCCCceEEEEcC
Q psy9936          69 AQKDWVYIYDNQGIEL---------------------HCL-----------------KVLNKVTRMEFLPYHFLLATASE  110 (315)
Q Consensus        69 ~~~~~i~i~~~~~~~~---------------------~~~-----------------~~~~~v~~~~~~~~~~~l~~~~~  110 (315)
                      +.|.+|++|.+..+..                     ..+                 .|..-|++++++.|...++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            7899999998731100                     000                 0334578899999988887764 


Q ss_pred             CCeEEEEEccCCe---EEEEeccCC-----CCeEEEEEcCC-CCEEEEEcCCCeEEEEcCCCCcc------eeEe-----
Q psy9936         111 EGYLSWLDTSIGK---IVSDFSAKK-----GKLSVMTQNPY-NACICLGHRNGTVTMWSPTVQKP------LASL-----  170 (315)
Q Consensus       111 d~~i~~~d~~~~~---~~~~~~~~~-----~~v~~~~~~p~-~~~l~~~~~d~~i~i~d~~~~~~------~~~~-----  170 (315)
                      |-.|.+|++.-..   .+.-++.+.     .-|++..|+|. .+.|+..+..|+|++-|+|....      +...     
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            6789999986332   122222222     23788889995 45888889999999999984311      1111     


Q ss_pred             -----ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-------------Cc---eeEEEccCCe
Q psy9936         171 -----LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-------------PI---NNLAFSQRGL  229 (315)
Q Consensus       171 -----~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~v---~~~~~s~~g~  229 (315)
                           ..--..|..+.|+++|+|+++-+. -+|++||+....+++.+++.|.             .|   ..++|+.++.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence                 111246889999999999988654 3799999965448888887663             12   4678888875


Q ss_pred             EEEE--cCCEEEecC
Q psy9936         230 LATS--RGNIVEFLK  242 (315)
Q Consensus       230 ~~~~--~~~~i~~~~  242 (315)
                      ++.+  ..+..++++
T Consensus       343 ~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFN  357 (433)
T ss_pred             eEecccccceEEEec
Confidence            4433  466677665

>KOG2315|consensus

Probab=99.53  E-value=3e-12  Score=108.60  Aligned_cols=226  Identities=16%  Similarity=0.220  Sum_probs=143.4

Q ss_pred             cEEEEEEcCCCCEEEEEc-----C-----CCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCC
Q psy9936          12 GIYRMNYTKNGRHLLLGG-----K-----RGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~-----~-----dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~   80 (315)
                      .++++.|||-|.+|.+--     .     .-.+.+|+++++.....+. ....-++..|+.|..+.+--..+.+++|++.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~  154 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG  154 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence            678899999999887521     1     2357899998865554444 1222257778887766665556677777764


Q ss_pred             CCEE-EEeecCCceEEEEEcCC----------------------------------------------------Cc-eEE
Q psy9936          81 GIEL-HCLKVLNKVTRMEFLPY----------------------------------------------------HF-LLA  106 (315)
Q Consensus        81 ~~~~-~~~~~~~~v~~~~~~~~----------------------------------------------------~~-~l~  106 (315)
                      +... ...-+...+..+.+||.                                                    |. +|+
T Consensus       155 ~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLv  234 (566)
T KOG2315|consen  155 SFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLV  234 (566)
T ss_pred             CccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEE
Confidence            3211 11112233444444443                                                    22 111


Q ss_pred             --EEcCC---------CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEE--EcCCCeEEEEcCCCCcceeEeecc
Q psy9936         107 --TASEE---------GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL--GHRNGTVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus       107 --~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~  173 (315)
                        +...|         .+++++++........+. ..++|.++.|+|+|+-+++  |-.-..+.|||++ +.++..+  .
T Consensus       235 LastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~  310 (566)
T KOG2315|consen  235 LASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--P  310 (566)
T ss_pred             EEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--C
Confidence              11111         134444444222222222 4688999999999986654  5667899999998 6677666  3


Q ss_pred             cccEEEEEECCCCCEEEEeeC---CCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeE--EEEc------CCEEEecC
Q psy9936         174 KAGIQSVAVNHTGTYMATSAG---DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLL--ATSR------GNIVEFLK  242 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~------~~~i~~~~  242 (315)
                      .++-+++-|+|.|++++.++-   .|.|-|||+.+. +++..+.... -+-+.|+|||.+  .++.      |+.+++|+
T Consensus       311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             CCCccceEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            677889999999999998875   468999999997 8887776543 566899999953  3333      56666665


Q ss_pred             C
Q psy9936         243 P  243 (315)
Q Consensus       243 ~  243 (315)
                      .
T Consensus       389 y  389 (566)
T KOG2315|consen  389 Y  389 (566)
T ss_pred             e
Confidence            4

>KOG2315|consensus

Probab=99.52  E-value=7.7e-12  Score=106.15  Aligned_cols=210  Identities=17%  Similarity=0.267  Sum_probs=145.4

Q ss_pred             CCcEEEEEEcCCCC--EEEE-----EcCCCeEEEEEccCceEEEEec----CCCceeEEEEeecCcE-EE-EEe--C---
Q psy9936          10 QFGIYRMNYTKNGR--HLLL-----GGKRGHVAAFDWVRKTLACEMN----VMEEVYDIKWLHLETM-FA-VAQ--K---   71 (315)
Q Consensus        10 ~~~v~~~~~s~~~~--~l~~-----~~~dg~i~v~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~-l~-~~~--~---   71 (315)
                      ..+|..+.+||.+.  .+|+     .+.-+.++||..........+.    ....--.+.|++-|.- |+ +.+  |   
T Consensus       165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn  244 (566)
T KOG2315|consen  165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN  244 (566)
T ss_pred             ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence            56788889998743  4443     3445689999876322211111    1122334678876542 22 222  2   


Q ss_pred             ------CeEEEEeCCCCEEE-EeecCCceEEEEEcCCCceEEE--EcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC
Q psy9936          72 ------DWVYIYDNQGIELH-CLKVLNKVTRMEFLPYHFLLAT--ASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        72 ------~~i~i~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p  142 (315)
                            .+++++++++.... .+...++|.++.|+|++.-+++  |-.-.++.+||++ +.++..+  ..++-+++-|+|
T Consensus       245 ~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp  321 (566)
T KOG2315|consen  245 ASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP  321 (566)
T ss_pred             ccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC
Confidence                  36899998865443 3556799999999999976554  4557789999987 6777766  456678899999


Q ss_pred             CCCEEEEEcC---CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee------CCCcEEEEEccCCCCCeeEe
Q psy9936         143 YNACICLGHR---NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA------GDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       143 ~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~------~d~~i~iwd~~~~~~~~~~~  213 (315)
                      .|++++.+|-   .|.|.|||..+.+++..+.....  +-..|+|||++++|+.      -|+.++||+...  ..+...
T Consensus       322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG--~~l~~~  397 (566)
T KOG2315|consen  322 HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG--SLLHEK  397 (566)
T ss_pred             CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC--ceeehh
Confidence            9999887764   57999999999888888875433  4578999999999886      367899999976  455444


Q ss_pred             ccCCCceeEEEcc
Q psy9936         214 RTRTPINNLAFSQ  226 (315)
Q Consensus       214 ~~~~~v~~~~~s~  226 (315)
                      ...+....+.|-|
T Consensus       398 ~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  398 MFKSELLQVEWRP  410 (566)
T ss_pred             hhhHhHhheeeee
Confidence            3333566777765

>KOG1064|consensus

Probab=99.50  E-value=1.4e-13  Score=130.21  Aligned_cols=190  Identities=19%  Similarity=0.346  Sum_probs=152.2

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEE-eCCeEEEEeCCCCEEEEe
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQGIELHCL   87 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~~~~~~~   87 (315)
                      ..|.++.=+|...+.++|+.||.+++|....++.+..++  ....|+.+.|+.+|..+..+ .||.+.+|.+..+.....
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~ 2288 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSW 2288 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceecc
Confidence            567788888988999999999999999999888887776  44678999999998877766 499999999976554443


Q ss_pred             e-cCCceEEEEEcCCCceEEEEc---CCCeEEEEEccCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          88 K-VLNKVTRMEFLPYHFLLATAS---EEGYLSWLDTSIG---KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        88 ~-~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      + |......+.|-.  ..+++++   .++.+.+||..-.   ..++  ..|.+.++++++-|..++|++|+.+|.|.+||
T Consensus      2289 qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence            3 445566666654  4566653   5778999996422   2343  67999999999999999999999999999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      ++..+.+++++.         +. ...++++|+..|.|+||++... ..+..++.
T Consensus      2365 ~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~p~ 2408 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTFPS 2408 (2439)
T ss_pred             hHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc-chhhcCch
Confidence            998887776663         44 5678999999999999999988 77777664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.50  E-value=4.9e-11  Score=101.99  Aligned_cols=188  Identities=14%  Similarity=0.153  Sum_probs=132.3

Q ss_pred             EEEcCCCeEEEEEccCceEEEEecCCCce-eEEEEeecCcEEEEEe-CCeEEEEeC-CCCEEEEeecCCceEEEEEcCCC
Q psy9936          26 LLGGKRGHVAAFDWVRKTLACEMNVMEEV-YDIKWLHLETMFAVAQ-KDWVYIYDN-QGIELHCLKVLNKVTRMEFLPYH  102 (315)
Q Consensus        26 ~~~~~dg~i~v~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~-~~~i~i~~~-~~~~~~~~~~~~~v~~~~~~~~~  102 (315)
                      ++-..++.|.|.|..+.+.+..+.....+ ..+.|+|||+++.+++ ||.|.++|+ +.+.+..+.......++++++||
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG   89 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDG   89 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TT
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCC
Confidence            45567899999999999999999855544 4578999999887776 899999999 55666777777888999999999


Q ss_pred             ceEEEEc-CCCeEEEEEccCCeEEEEeccC-------CCCeEEEEEcCCCCEEEEE-cCCCeEEEEcCCCCcceeE-eec
Q psy9936         103 FLLATAS-EEGYLSWLDTSIGKIVSDFSAK-------KGKLSVMTQNPYNACICLG-HRNGTVTMWSPTVQKPLAS-LLC  172 (315)
Q Consensus       103 ~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~~~~~~~~~-~~~  172 (315)
                      +++++++ .++.+.++|.++.+++..+...       ..++..+..+|....++.. -+.+.|.+.|....+.+.. ...
T Consensus        90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen   90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred             CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence            9988775 5889999999999988877532       3467788888888855544 4558999999877654432 222


Q ss_pred             ccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEec
Q psy9936         173 HKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      .........|+|+++|++++ ..++.|-++|..++ ..+..+.
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~  211 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALID  211 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE
T ss_pred             ccccccccccCcccceeeecccccceeEEEeeccc-eEEEEee
Confidence            34567789999999987665 45668999999887 5555543

...

>KOG0644|consensus

Probab=99.49  E-value=1.9e-14  Score=126.80  Aligned_cols=165  Identities=16%  Similarity=0.250  Sum_probs=130.3

Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                      +.|...|+|+.|...|.++++|+.|..++||.+.++.++....+|.+.++.++.+.++.++++++.|..|++|.+.++.+
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p  266 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP  266 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence            34668899999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec------cCCCceeEEEccCCe--EEEEcCCEE
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR------TRTPINNLAFSQRGL--LATSRGNIV  238 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~g~--~~~~~~~~i  238 (315)
                      +..+.+|++.|++++|+|-.    +.+.||++++||.+-  .++...+      ...-+.++.|..++.  ..++.++.-
T Consensus       267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~--~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea  340 (1113)
T KOG0644|consen  267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL--EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA  340 (1113)
T ss_pred             HHHHhccccceeeeccCccc----cCCCCCceEeccccc--cccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence            99999999999999999964    778999999999982  2222211      112356666666662  334446666


Q ss_pred             EecCCCceeeccccccccc
Q psy9936         239 EFLKPPEINFEPRRKANKA  257 (315)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~  257 (315)
                      ..|....++|..+....+.
T Consensus       341 ~n~e~~~l~~~~~~lif~t  359 (1113)
T KOG0644|consen  341 RNHEFEQLAWRSNLLIFVT  359 (1113)
T ss_pred             ccchhhHhhhhccceEEEe
Confidence            6555544444444333333

>KOG0974|consensus

Probab=99.49  E-value=2.1e-12  Score=116.62  Aligned_cols=186  Identities=12%  Similarity=0.181  Sum_probs=142.0

Q ss_pred             eeEEEEeecCcEEE-EEeCCeEEEEeCCCCE-EEEeecCC-----ceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE
Q psy9936          54 VYDIKWLHLETMFA-VAQKDWVYIYDNQGIE-LHCLKVLN-----KVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS  126 (315)
Q Consensus        54 v~~~~~~~~~~~l~-~~~~~~i~i~~~~~~~-~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  126 (315)
                      +....+.-....++ ..+++.+.+||..... ...+.+..     ...-+.++++.-++++|+.-+.|.+|+....+...
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~  169 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI  169 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence            33333333444444 4568899999985433 33333332     22334456677789999999999999987433333


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCccee-EeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         127 DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA-SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       127 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      .+.+|.+.+..+.|+-||+++++.++|.++++|++.+.+... ..-+|+..|+.+.|.|+  .++|++.|.+.++|+...
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            688999999999999999999999999999999999987665 55689999999999998  899999999999997765


Q ss_pred             CCCCeeEeccCC--CceeEEEccCCe--EEEEcCCEEEecCC
Q psy9936         206 LEGPLNTFRTRT--PINNLAFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       206 ~~~~~~~~~~~~--~v~~~~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                        ..+..+..|.  .++.++..++..  +..+.|+.++.|+.
T Consensus       248 --~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  248 --TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             --ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence              4555777775  599999998874  44556899998885

>KOG1354|consensus

Probab=99.48  E-value=1.9e-12  Score=103.71  Aligned_cols=196  Identities=14%  Similarity=0.178  Sum_probs=143.3

Q ss_pred             CCcEEEEEEcCCCC--EEEEEcCCCeEEEEEccCceE-----------------------------------EEEec--C
Q psy9936          10 QFGIYRMNYTKNGR--HLLLGGKRGHVAAFDWVRKTL-----------------------------------ACEMN--V   50 (315)
Q Consensus        10 ~~~v~~~~~s~~~~--~l~~~~~dg~i~v~~~~~~~~-----------------------------------~~~~~--~   50 (315)
                      ...|..+.|.++++  .++..+.|.+|++|.+.....                                   .+.+.  |
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            56788999998765  566678899999998642211                                   11111  4


Q ss_pred             CCceeEEEEeecCcEEEEEeCCeEEEEeCC--CC--EEEEeecC------CceEEEEEcCC-CceEEEEcCCCeEEEEEc
Q psy9936          51 MEEVYDIKWLHLETMFAVAQKDWVYIYDNQ--GI--ELHCLKVL------NKVTRMEFLPY-HFLLATASEEGYLSWLDT  119 (315)
Q Consensus        51 ~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~--~~--~~~~~~~~------~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~  119 (315)
                      .--|++++++.|+..+.++.|=.|.+|+++  .+  .+.-++..      .-|++..|+|. .+.|+..+..|+|++-|+
T Consensus       164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             eeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            445889999999999999999999999983  22  23333322      45788999997 467888889999999999


Q ss_pred             cCCeEE----EEec------------cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC-CCcceeEeecccc-------
Q psy9936         120 SIGKIV----SDFS------------AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT-VQKPLASLLCHKA-------  175 (315)
Q Consensus       120 ~~~~~~----~~~~------------~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~-------  175 (315)
                      +...+.    ..+.            .--..|..+.|+++|+++++-+. -+|++||+. ..+++.+++.|..       
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS  322 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence            843211    1111            11234788999999999988643 589999994 5678877776642       


Q ss_pred             --------cEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         176 --------GIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       176 --------~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                              .-..++|+-++.+++||+..+..+++++..+
T Consensus       323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                    2246789999999999999999999997765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=3.9e-10  Score=91.39  Aligned_cols=232  Identities=15%  Similarity=0.130  Sum_probs=156.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC---CCeEEEEEccC--ceEEEEec---CCCceeEEEEeecCcEEEEEe--CCeEEEEeC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK---RGHVAAFDWVR--KTLACEMN---VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~---dg~i~v~~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~   79 (315)
                      ...++-++|+|++++|.++..   .|.|..|.++.  |++...-.   ...+...++++++|++++++.  .|.|.++-+
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            466788999999998887754   46777777664  55433222   223447899999999999986  689999988


Q ss_pred             C--CC---EEEEeecCCc----------eEEEEEcCCCceEEEEcC-CCeEEEEEccCCeEEEEec---cCCCCeEEEEE
Q psy9936          80 Q--GI---ELHCLKVLNK----------VTRMEFLPYHFLLATASE-EGYLSWLDTSIGKIVSDFS---AKKGKLSVMTQ  140 (315)
Q Consensus        80 ~--~~---~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~  140 (315)
                      .  +.   .+..+.|.+.          +.+..+.|++++|++... --.|.+|++..|+....-.   ........|.|
T Consensus       119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F  198 (346)
T COG2706         119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF  198 (346)
T ss_pred             ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE
Confidence            3  22   2233444444          788999999998888753 2369999999775432211   23345688999


Q ss_pred             cCCCCEEEEEcC-CCeEEEEcCCCC-cceeEeec---------ccccEEEEEECCCCCEEEEeeC-CCcEEEEEccCCCC
Q psy9936         141 NPYNACICLGHR-NGTVTMWSPTVQ-KPLASLLC---------HKAGIQSVAVNHTGTYMATSAG-DSQLRIWDVRNLEG  208 (315)
Q Consensus       141 ~p~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~---------~~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~  208 (315)
                      +|++++.++.++ +++|.+|..+.. ..+..++.         ...+...|..+|||++|.++.. ...|.+|.+.....
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence            999998877665 889999998863 22222221         1346678999999999988743 33788888875423


Q ss_pred             CeeEe---ccCC-CceeEEEccCCeEE-EEc--CCEEEec
Q psy9936         209 PLNTF---RTRT-PINNLAFSQRGLLA-TSR--GNIVEFL  241 (315)
Q Consensus       209 ~~~~~---~~~~-~v~~~~~s~~g~~~-~~~--~~~i~~~  241 (315)
                      .+...   ..+. ..+.+.|+|+|.++ ++.  +++|.++
T Consensus       279 ~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         279 KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            33333   2333 37999999999543 332  4455554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.47  E-value=2.4e-10  Score=109.94  Aligned_cols=227  Identities=11%  Similarity=0.078  Sum_probs=152.4

Q ss_pred             EEEEEcCC-CCEEEEEcCCCeEEEEEccCceEEEEecCC---------------CceeEEEEeecCcEEEEEe--CCeEE
Q psy9936          14 YRMNYTKN-GRHLLLGGKRGHVAAFDWVRKTLACEMNVM---------------EEVYDIKWLHLETMFAVAQ--KDWVY   75 (315)
Q Consensus        14 ~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~--~~~i~   75 (315)
                      ..++++++ +..+++-+.++.|+++|.... .+..+...               .....+++.+++..|.++.  ++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 567777777889999997644 33333211               1357889998877665554  56899


Q ss_pred             EEeCCCCEEEEeec------------------CCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEeccC-----
Q psy9936          76 IYDNQGIELHCLKV------------------LNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDFSAK-----  131 (315)
Q Consensus        76 i~~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----  131 (315)
                      ++|..+..+..+..                  ......++++| ++.++++.+.++.|++||..++... .+.+.     
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence            99987766655421                  12346799999 5666677778889999998776432 22110     


Q ss_pred             ----------CCCeEEEEEcCCCCEE-EEEcCCCeEEEEcCCCCcceeEe-------------ecc--------cccEEE
Q psy9936         132 ----------KGKLSVMTQNPYNACI-CLGHRNGTVTMWSPTVQKPLASL-------------LCH--------KAGIQS  179 (315)
Q Consensus       132 ----------~~~v~~~~~~p~~~~l-~~~~~d~~i~i~d~~~~~~~~~~-------------~~~--------~~~i~~  179 (315)
                                -.....++++|+|+.| ++.+.++.|++||+.++......             -.+        -....+
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence                      1235679999999855 45566789999999876421110             000        113468


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--------------CCceeEEEccCCeE-EE-EcCCEEEecCC
Q psy9936         180 VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--------------TPINNLAFSQRGLL-AT-SRGNIVEFLKP  243 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~s~~g~~-~~-~~~~~i~~~~~  243 (315)
                      ++++|+|.++++-+.++.|++||..++ .........              ..+..++++++|.+ ++ +.++.|+.|++
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg-~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATK-RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCC-eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            899999998888889999999999875 433222110              13678999999964 33 35788999987

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.47  E-value=5.4e-10  Score=93.74  Aligned_cols=226  Identities=13%  Similarity=0.092  Sum_probs=142.8

Q ss_pred             EEEEEEcCCCCEEEEEcC----------CCeEEEEEccCceEEEEecCCCc--------eeEEEEeecCcEEEEEe---C
Q psy9936          13 IYRMNYTKNGRHLLLGGK----------RGHVAAFDWVRKTLACEMNVMEE--------VYDIKWLHLETMFAVAQ---K   71 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~----------dg~i~v~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~---~   71 (315)
                      ...+ +||||+.|+++..          +..|.+||..+++....+.....        ...++++|||++|.+..   +
T Consensus        49 P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~  127 (352)
T TIGR02658        49 PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS  127 (352)
T ss_pred             Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC
Confidence            3444 9999998876654          67899999999999988874332        33789999999998875   6


Q ss_pred             CeEEEEeCCCC-EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-CeE-EEE---eccCCCCeE-EEEEcC-C
Q psy9936          72 DWVYIYDNQGI-ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-GKI-VSD---FSAKKGKLS-VMTQNP-Y  143 (315)
Q Consensus        72 ~~i~i~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~-~~~---~~~~~~~v~-~~~~~p-~  143 (315)
                      ..|.+.|+... .+..+.-.....-...+.++.+  +-+.||......+.+ |+. ...   +.....++. .-.|.+ +
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d  205 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS  205 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence            79999999654 4444544433333333333322  222344444433321 221 111   111000100 003445 8


Q ss_pred             CCEEEEEcCCCeEEEEcCCCC-----cceeEeec-------ccccEEEEEECCCCCEEEEee----------CCCcEEEE
Q psy9936         144 NACICLGHRNGTVTMWSPTVQ-----KPLASLLC-------HKAGIQSVAVNHTGTYMATSA----------GDSQLRIW  201 (315)
Q Consensus       144 ~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~-------~~~~i~~~~~sp~g~~l~~~~----------~d~~i~iw  201 (315)
                      |+++++... |.|.+.|+...     .....+..       ..+.+.-++++|+++.+++..          ..+.|.++
T Consensus       206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi  284 (352)
T TIGR02658       206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV  284 (352)
T ss_pred             CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence            887777766 99999996543     22222211       223444599999999887743          12479999


Q ss_pred             EccCCCCCeeEeccCCCceeEEEccCCe-E--EEE-cCCEEEecCC
Q psy9936         202 DVRNLEGPLNTFRTRTPINNLAFSQRGL-L--ATS-RGNIVEFLKP  243 (315)
Q Consensus       202 d~~~~~~~~~~~~~~~~v~~~~~s~~g~-~--~~~-~~~~i~~~~~  243 (315)
                      |..+. +.+..+.....+..++++|||. +  ++. .++.|.+.+.
T Consensus       285 D~~t~-kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       285 DAKTG-KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             ECCCC-eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            99999 8899888888899999999996 3  333 3577887775

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.9e-10  Score=100.11  Aligned_cols=191  Identities=12%  Similarity=0.028  Sum_probs=123.1

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcE-EEEE-e---CCeEEEEeCCCCEEEEeec-CCceEEEEEcCCCceE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETM-FAVA-Q---KDWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFLL  105 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~-~---~~~i~i~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  105 (315)
                      ..|.+-|.+.......... .......|+|||+. ++.. .   +..|+++|+.+.....+.. .+......|+|||+.+
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             ceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence            4566667655544333333 46778999999974 5543 2   2479999997666655543 3556678899999766


Q ss_pred             EEE-cC--CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCCcceeEeecccccEEE
Q psy9936         106 ATA-SE--EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQKPLASLLCHKAGIQS  179 (315)
Q Consensus       106 ~~~-~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~  179 (315)
                      +.. +.  +..|.++|+.++.. ..+..+........|+|||+.|+..+. .+  .|.++|+.+++...... ....  .
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~  323 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--N  323 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--C
Confidence            544 32  34688889887764 344444433445689999997766553 33  68888888776533222 1111  2


Q ss_pred             EEECCCCCEEEEeeCC---------CcEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         180 VAVNHTGTYMATSAGD---------SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      ..|||||++|+..+..         ..|.+.|+.++ .. ..+..........|+|||.
T Consensus       324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~~-~~LT~~~~~~~p~~SPDG~  380 (419)
T PRK04043        324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-YI-RRLTANGVNQFPRFSSDGG  380 (419)
T ss_pred             ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC-Ce-EECCCCCCcCCeEECCCCC
Confidence            4899999988877643         25788888776 43 3343333344689999995

>KOG1240|consensus

Probab=99.46  E-value=1.5e-11  Score=113.15  Aligned_cols=205  Identities=13%  Similarity=0.196  Sum_probs=143.2

Q ss_pred             EEccCceEEEEec-CCCceeEEEEeecC-cEEEEEe-CCeEEEEeCC---CC--EEEE---e-ecCCceEEEEEcCCCce
Q psy9936          37 FDWVRKTLACEMN-VMEEVYDIKWLHLE-TMFAVAQ-KDWVYIYDNQ---GI--ELHC---L-KVLNKVTRMEFLPYHFL  104 (315)
Q Consensus        37 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~-~~~i~i~~~~---~~--~~~~---~-~~~~~v~~~~~~~~~~~  104 (315)
                      |+. .|.++..+. |...+..++.++.. .++++++ ||+|++|+..   +.  ..+.   . .....+.++...+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 355555554 88888888887754 8888887 8999999973   22  1111   2 24478899999999999


Q ss_pred             EEEEcCCCeEEEEEccCC--e-----EEEEeccC-CCCeEEE-EEcC-CCC-EEEEEcCCCeEEEEcCCCCcceeEee--
Q psy9936         105 LATASEEGYLSWLDTSIG--K-----IVSDFSAK-KGKLSVM-TQNP-YNA-CICLGHRNGTVTMWSPTVQKPLASLL--  171 (315)
Q Consensus       105 l~~~~~d~~i~~~d~~~~--~-----~~~~~~~~-~~~v~~~-~~~p-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--  171 (315)
                      +|+++.||.|.+.++...  .     .......+ .+.+..| ++.. .+. .++.+...+.|..||+++...+..++  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999998752  1     11111112 2334333 3332 223 77888888999999999876555443  


Q ss_pred             cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--CCceeEEEccCC----e-EEEE--cCCEEEecC
Q psy9936         172 CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--TPINNLAFSQRG----L-LATS--RGNIVEFLK  242 (315)
Q Consensus       172 ~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g----~-~~~~--~~~~i~~~~  242 (315)
                      ...+.|++++.+|.+.++++|+..|.+-+||++-. .++..+..+  .+++.+..+|.-    . +.++  +.+.+..|+
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            34578999999999999999999999999999988 888877654  367777766643    2 2222  345666665


Q ss_pred             C
Q psy9936         243 P  243 (315)
Q Consensus       243 ~  243 (315)
                      .
T Consensus      1272 ~ 1272 (1431)
T KOG1240|consen 1272 M 1272 (1431)
T ss_pred             c
Confidence            5

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=4e-10  Score=91.33  Aligned_cols=197  Identities=12%  Similarity=0.169  Sum_probs=139.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC-CeEEEEEccC-ceE---EEEecCCCc----------eeEEEEeecCcEEEEEe--CC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR-GHVAAFDWVR-KTL---ACEMNVMEE----------VYDIKWLHLETMFAVAQ--KD   72 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d-g~i~v~~~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~~--~~   72 (315)
                      ..+.+.++++++|++++++... |.|.++-+.. |.+   +....|.++          +....+.|++++|++..  -.
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            3445889999999999988754 7899998854 443   234446555          88899999999999886  46


Q ss_pred             eEEEEeCCCCEEEE-----eecCCceEEEEEcCCCceEEEEcC-CCeEEEEEccCC-eEEEEecc---------CCCCeE
Q psy9936          73 WVYIYDNQGIELHC-----LKVLNKVTRMEFLPYHFLLATASE-EGYLSWLDTSIG-KIVSDFSA---------KKGKLS  136 (315)
Q Consensus        73 ~i~i~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~-~~~~~~~~---------~~~~v~  136 (315)
                      .|.+|+++...+..     ++.......|.|+|++++.++.++ +++|.+|..... ..+..++.         ......
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a  247 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA  247 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence            89999985433222     334467889999999998877764 889999998763 22222221         234577


Q ss_pred             EEEEcCCCCEEEEEcC-CCeEEEEcCCCCc-ceeE---eecccccEEEEEECCCCCEEEEeeCCC-cEEEEEccCC
Q psy9936         137 VMTQNPYNACICLGHR-NGTVTMWSPTVQK-PLAS---LLCHKAGIQSVAVNHTGTYMATSAGDS-QLRIWDVRNL  206 (315)
Q Consensus       137 ~~~~~p~~~~l~~~~~-d~~i~i~d~~~~~-~~~~---~~~~~~~i~~~~~sp~g~~l~~~~~d~-~i~iwd~~~~  206 (315)
                      .+..+|||++|+++.+ ...|.+|.+.... .+..   ...+........|+|.|++|+++..++ .|.+|.+...
T Consensus       248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            8999999999988764 3478888766432 1222   223444578899999999999887654 6888877643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.41  E-value=3.1e-09  Score=86.59  Aligned_cols=213  Identities=15%  Similarity=0.150  Sum_probs=144.3

Q ss_pred             EEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEe-ecCcEEEEEeCCeEEEEeCCCCEEEEeec--
Q psy9936          14 YRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWL-HLETMFAVAQKDWVYIYDNQGIELHCLKV--   89 (315)
Q Consensus        14 ~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~i~i~~~~~~~~~~~~~--   89 (315)
                      -++.|.+ ++.++++.-..+.|+.|+..++.... +.... ...+.+. +++.++++. .+.+.++|..+..+..+..  
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v~~-~~~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYVAD-SGGIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEEEE-TTCEEEEETTTTEEEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEEEE-cCceEEEecCCCcEEEEeecc
Confidence            3678888 67777777778999999998876543 33333 6777777 676665555 4555666986655544321  


Q ss_pred             -----CCceEEEEEcCCCceEEEEcCC--------CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcCCCe
Q psy9936          90 -----LNKVTRMEFLPYHFLLATASEE--------GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHRNGT  155 (315)
Q Consensus        90 -----~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~  155 (315)
                           ....+.+++.|+|++.++....        |.|..++.. ++...... .-...+.++|+|+++.|+ +-+..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence                 2457889999999977765433        567778876 55433333 345678999999999765 5567889


Q ss_pred             EEEEcCCCCcc-e------eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEEc-c
Q psy9936         156 VTMWSPTVQKP-L------ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFS-Q  226 (315)
Q Consensus       156 i~i~d~~~~~~-~------~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s-~  226 (315)
                      |..|++..... +      ..+....+..-.+++..+|++.++....+.|.+++.. + +.+..+... ..+++++|. +
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fgg~  235 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFGGP  235 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEEST
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEECC
Confidence            99999864322 1      1222222347889999999988888888899999988 5 788877766 468999994 4


Q ss_pred             CC--eEEEE
Q psy9936         227 RG--LLATS  233 (315)
Q Consensus       227 ~g--~~~~~  233 (315)
                      +.  +++++
T Consensus       236 ~~~~L~vTt  244 (246)
T PF08450_consen  236 DGKTLYVTT  244 (246)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            43  45554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2041|consensus

Probab=99.41  E-value=1.4e-11  Score=107.64  Aligned_cols=223  Identities=12%  Similarity=0.106  Sum_probs=158.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE---------------EEEec-CCCceeEEEEeecCcEEEEEe-CC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL---------------ACEMN-VMEEVYDIKWLHLETMFAVAQ-KD   72 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~---------------~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~   72 (315)
                      +....|++|+....+||+|+.||.++|..+.+...               -+++. |.+.|.-+.|+.+.+.|.++. +|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            56679999999999999999999999997764321               12334 788999999999888888775 89


Q ss_pred             eEEEEeC-CCC---EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q psy9936          73 WVYIYDN-QGI---ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        73 ~i~i~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  148 (315)
                      -|.+|-+ .+.   ++..-...+-|.+++|+.+|..++..-.||.|.+=.++ |..+..-.........+.|++|.+.++
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecccHHHHH
Confidence            9999987 332   11222234678999999999999999999998887765 333332222222345689999999888


Q ss_pred             EEcCCCeEEEEcCCCCc-------ceeEe----ecccccEEEEEEC--------CCCCEEEEeeCCCcEEEEEccCCCCC
Q psy9936         149 LGHRNGTVTMWSPTVQK-------PLASL----LCHKAGIQSVAVN--------HTGTYMATSAGDSQLRIWDVRNLEGP  209 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~-------~~~~~----~~~~~~i~~~~~s--------p~g~~l~~~~~d~~i~iwd~~~~~~~  209 (315)
                      .+-.+|.+.+||...+-       +....    ......|..+.|.        |+...|+++-.+|.+.|..-.+...|
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            88889999999976431       11111    1112235556654        57779999999999988776665233


Q ss_pred             eeEeccCCCceeEEEccCCeEEEEc
Q psy9936         210 LNTFRTRTPINNLAFSQRGLLATSR  234 (315)
Q Consensus       210 ~~~~~~~~~v~~~~~s~~g~~~~~~  234 (315)
                      + .+...-.+..+.|+|+|.+++.+
T Consensus       253 v-v~dtgm~~vgakWnh~G~vLAvc  276 (1189)
T KOG2041|consen  253 V-VVDTGMKIVGAKWNHNGAVLAVC  276 (1189)
T ss_pred             e-EEecccEeecceecCCCcEEEEc
Confidence            3 33334568899999999765544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=2.3e-09  Score=90.02  Aligned_cols=195  Identities=15%  Similarity=0.117  Sum_probs=130.3

Q ss_pred             EEEEcCCCCEEEEEc-C-CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeC--CCCEEE-Eee-
Q psy9936          15 RMNYTKNGRHLLLGG-K-RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN--QGIELH-CLK-   88 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~-~-dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~--~~~~~~-~~~-   88 (315)
                      .++++|||++|++.. . +..|.+.|+.+++.+..+...++..-+..+++. +++.+.||......+  +++... ... 
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~v  187 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEV  187 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeee
Confidence            789999999888765 3 689999999999999988865544444443333 334444554443332  222110 000 


Q ss_pred             -cC--Cce-EEEEEcC-CCceEEEEcCCCeEEEEEccCC-----eEEEEecc-------CCCCeEEEEEcCCCCEEEEEc
Q psy9936          89 -VL--NKV-TRMEFLP-YHFLLATASEEGYLSWLDTSIG-----KIVSDFSA-------KKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        89 -~~--~~v-~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~-------~~~~v~~~~~~p~~~~l~~~~  151 (315)
                       +.  .++ ..-.|.+ +|.++++... |+|.+.|+...     .....+..       ..+....++++|+++.+++..
T Consensus       188 f~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~  266 (352)
T TIGR02658       188 FHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA  266 (352)
T ss_pred             ecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence             01  111 0114455 7877777666 99999996432     23332221       233445599999999887742


Q ss_pred             ----------CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCC-EEEEee-CCCcEEEEEccCCCCCeeEe
Q psy9936         152 ----------RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT-YMATSA-GDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       152 ----------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~-~d~~i~iwd~~~~~~~~~~~  213 (315)
                                ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.+ .++.|.++|..++ +.+..+
T Consensus       267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~-k~i~~i  338 (352)
T TIGR02658       267 DQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG-KELSSV  338 (352)
T ss_pred             cCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence                      225899999999999988873 56889999999999 777665 6788999999998 888877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.40  E-value=2.1e-10  Score=96.63  Aligned_cols=230  Identities=12%  Similarity=0.089  Sum_probs=153.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---------------CeEEEEEccCceEEEEecCC-Cc--ee-EEEEeecCcEEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---------------GHVAAFDWVRKTLACEMNVM-EE--VY-DIKWLHLETMFAVAQ   70 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---------------g~i~v~~~~~~~~~~~~~~~-~~--v~-~~~~~~~~~~l~~~~   70 (315)
                      +..|.-+.|||+++||.+=+..               ..+.+||..++.++..+... .+  .+ -+.|+-+.+++|--.
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            5678899999999999975432               35999999999999888733 23  33 678999988888777


Q ss_pred             CCeEEEEeCCCCE-EEEee--cCCceEEEEEcCCC--ceEEE-----EcCCCeEEEEEccCCeEEEEeccCCCCeEEEEE
Q psy9936          71 KDWVYIYDNQGIE-LHCLK--VLNKVTRMEFLPYH--FLLAT-----ASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQ  140 (315)
Q Consensus        71 ~~~i~i~~~~~~~-~~~~~--~~~~v~~~~~~~~~--~~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  140 (315)
                      ...++++++.... ...+.  ....+....|+|.+  ..|+.     .+.++.+++|.+..+..+.+...-...-..+.|
T Consensus       151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence            7889999973221 11111  13678889999974  34444     355778999999876655543222222356889


Q ss_pred             cCCCCEEEEEc-----------CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee--CCCcEEEEEccCCC
Q psy9936         141 NPYNACICLGH-----------RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA--GDSQLRIWDVRNLE  207 (315)
Q Consensus       141 ~p~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~d~~i~iwd~~~~~  207 (315)
                      ++.|++|++--           ....+.++++.... +.......++|...+|.|.++.+++.+  .+..+.++|++.. 
T Consensus       231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-  308 (561)
T COG5354         231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-  308 (561)
T ss_pred             ecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence            99999765321           12468888887433 322224578999999999988776654  7778999999873 


Q ss_pred             CCeeEeccCCCceeEEEccCCeE--EEEc---CCEEEecCC
Q psy9936         208 GPLNTFRTRTPINNLAFSQRGLL--ATSR---GNIVEFLKP  243 (315)
Q Consensus       208 ~~~~~~~~~~~v~~~~~s~~g~~--~~~~---~~~i~~~~~  243 (315)
                        +..+-....=+.+.|+|.+++  +++-   .|.+.+|++
T Consensus       309 --l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         309 --LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             --eEEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence              332323334456677777742  3332   245555555

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.39  E-value=2.9e-10  Score=107.48  Aligned_cols=226  Identities=13%  Similarity=0.141  Sum_probs=153.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEE----EccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC--
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAF----DWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI--   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~--   82 (315)
                      .+.|.++.|-++...++.+..+|.|.+.    +..+......-.....|.+++||||+.+|+... ++++.+.+.+-.  
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i  154 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI  154 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence            4678999999999989989999999999    655555544444678899999999999988776 667766542110  


Q ss_pred             --------------EE--------EEee-------------------------cCCceEEEEEcCCCceEEEEcC---C-
Q psy9936          83 --------------EL--------HCLK-------------------------VLNKVTRMEFLPYHFLLATASE---E-  111 (315)
Q Consensus        83 --------------~~--------~~~~-------------------------~~~~v~~~~~~~~~~~l~~~~~---d-  111 (315)
                                    .+        ..+.                         ....-..++|-.||.++|+.+.   . 
T Consensus       155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~  234 (928)
T PF04762_consen  155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG  234 (928)
T ss_pred             EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence                          00        0000                         0113456889999999998864   2 


Q ss_pred             --CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC---CCeEEEEcCCCCcceeEee----cccccEEEEEE
Q psy9936         112 --GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR---NGTVTMWSPTVQKPLASLL----CHKAGIQSVAV  182 (315)
Q Consensus       112 --~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~  182 (315)
                        ..++||+-+ |....+-..-.+--.+++|.|.|++||+...   ...|.+|.-+ |-.-..|.    .....|..+.|
T Consensus       235 ~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~W  312 (928)
T PF04762_consen  235 SRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAW  312 (928)
T ss_pred             ceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEE
Confidence              469999954 7766655544455567899999999998754   3567777744 32222222    34568899999


Q ss_pred             CCCCCEEEEeeCCCcEEEEEccCCCC--CeeEeccC--CCceeEEEccCC---eEEEEcCCEEE
Q psy9936         183 NHTGTYMATSAGDSQLRIWDVRNLEG--PLNTFRTR--TPINNLAFSQRG---LLATSRGNIVE  239 (315)
Q Consensus       183 sp~g~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~--~~v~~~~~s~~g---~~~~~~~~~i~  239 (315)
                      ++|+..||....|. |.+|-..+. .  +-+.+...  ..+..+.|+|..   +.+.+.++.+.
T Consensus       313 n~ds~iLAv~~~~~-vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~  374 (928)
T PF04762_consen  313 NSDSEILAVWLEDR-VQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE  374 (928)
T ss_pred             CCCCCEEEEEecCC-ceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence            99999999987665 999998875 2  22233322  235558888754   33444434443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.39  E-value=5.5e-10  Score=107.47  Aligned_cols=194  Identities=11%  Similarity=0.124  Sum_probs=133.4

Q ss_pred             cEEEEEEcCCCCEEEEE-cCCCeEEEEEccCceEEEEecC-----------------CCceeEEEEeec-CcEEEEEe-C
Q psy9936          12 GIYRMNYTKNGRHLLLG-GKRGHVAAFDWVRKTLACEMNV-----------------MEEVYDIKWLHL-ETMFAVAQ-K   71 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~-~~~l~~~~-~   71 (315)
                      .+..+++++++..|+++ ..++.|+++|+.++........                 -.....++++|+ +.++++.. +
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            36789999988865554 4457899999877654322110                 113467899994 55555443 6


Q ss_pred             CeEEEEeCCCCEEEEeec----------------CCceEEEEEcCCCce-EEEEcCCCeEEEEEccCCeEEEEe------
Q psy9936          72 DWVYIYDNQGIELHCLKV----------------LNKVTRMEFLPYHFL-LATASEEGYLSWLDTSIGKIVSDF------  128 (315)
Q Consensus        72 ~~i~i~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~------  128 (315)
                      +.|++||..+..+..+..                ......++++|++.. +++-+.++.|++||+.++......      
T Consensus       705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~  784 (1057)
T PLN02919        705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF  784 (1057)
T ss_pred             CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence            789999986554433211                134567999999874 455566789999999876432111      


Q ss_pred             -------ccC--------CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec--------------ccccEEE
Q psy9936         129 -------SAK--------KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC--------------HKAGIQS  179 (315)
Q Consensus       129 -------~~~--------~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------~~~~i~~  179 (315)
                             ..+        -.....++++++|+++++-..++.|++||..++... .+.+              .-.....
T Consensus       785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceE
Confidence                   000        112468899999998888888999999999876543 2221              1125678


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         180 VAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      ++++++|+++++.+.++.|++||+.++
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            999999998888889999999999886

>KOG4547|consensus

Probab=99.39  E-value=7.1e-11  Score=100.98  Aligned_cols=164  Identities=16%  Similarity=0.233  Sum_probs=132.3

Q ss_pred             ecCcEEEEEe-CCeEEEEeCCCCEEEE-eec----CCceEEEEE------cC--------------CCceEEEEcCCCeE
Q psy9936          61 HLETMFAVAQ-KDWVYIYDNQGIELHC-LKV----LNKVTRMEF------LP--------------YHFLLATASEEGYL  114 (315)
Q Consensus        61 ~~~~~l~~~~-~~~i~i~~~~~~~~~~-~~~----~~~v~~~~~------~~--------------~~~~l~~~~~d~~i  114 (315)
                      |...++|... ||.+++|+.....++. +..    .+...+..|      +|              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3456677664 8999999985443332 221    133333333      22              22467788889999


Q ss_pred             EEEEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEe
Q psy9936         115 SWLDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       115 ~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~  192 (315)
                      .+|++..|+....+.  .|.+.|+++.++.+-.+|.+++.|+.+..|+......++.+.+....+.+++.+|||..|+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999998877765  688999999999999999999999999999999999999998888889999999999999988


Q ss_pred             eCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccC
Q psy9936         193 AGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQR  227 (315)
Q Consensus       193 ~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~  227 (315)
                      +.  +|++||+++. +.+..|.+|. +|+++.|.-+
T Consensus       163 s~--~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  163 SR--QIKVLDIETK-EVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             cc--eEEEEEccCc-eEEEEecCCCcceEEEEEEEe
Confidence            64  6999999999 9999999987 6899998876

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=1.7e-10  Score=97.18  Aligned_cols=248  Identities=13%  Similarity=0.125  Sum_probs=165.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe----------------CCe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ----------------KDW   73 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------~~~   73 (315)
                      ..++..++|||.|.+|++....| |.+|.......+..+.|. .|..+.|+|++++|++=.                ++.
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             CcchhheeecCcchheehhhccc-eEEccccchhheeeeecC-CceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence            56788999999999999877665 999998777655566554 489999999999998632                246


Q ss_pred             EEEEeCCCCEEE-EeecC-Cc--eE-EEEEcCCCceEEEEcCCCeEEEEEccCCeEE-EEecc-CCCCeEEEEEcCCCC-
Q psy9936          74 VYIYDNQGIELH-CLKVL-NK--VT-RMEFLPYHFLLATASEEGYLSWLDTSIGKIV-SDFSA-KKGKLSVMTQNPYNA-  145 (315)
Q Consensus        74 i~i~~~~~~~~~-~~~~~-~~--v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~v~~~~~~p~~~-  145 (315)
                      +.+||+.+..+. .+... .+  .+ -+.|+.+.+++|-. ....++++++ ++... ..+.. ....+....|+|.++ 
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~  187 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH  187 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCC
Confidence            999999655443 33322 22  33 68899888877665 3447999997 33211 11111 134578889999644 


Q ss_pred             -EEEE-----EcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee-----------CCCcEEEEEccCCCC
Q psy9936         146 -CICL-----GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA-----------GDSQLRIWDVRNLEG  208 (315)
Q Consensus       146 -~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-----------~d~~i~iwd~~~~~~  208 (315)
                       .|++     .+.++++++|.+..++.+.+-.-....-..+.|.+.|++|+.--           ....++|+++... .
T Consensus       188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~  266 (561)
T COG5354         188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-S  266 (561)
T ss_pred             ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-c
Confidence             4443     46788999999987766655443344445789999999876531           1235888888864 2


Q ss_pred             CeeEeccCCCceeEEEccCCe-E-EEEc-----------CCEEEecCC----CceeecccccccccCCcch
Q psy9936         209 PLNTFRTRTPINNLAFSQRGL-L-ATSR-----------GNIVEFLKP----PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       209 ~~~~~~~~~~v~~~~~s~~g~-~-~~~~-----------~~~i~~~~~----~~~~~~~~~~~~~~~~~~~  262 (315)
                      +--.....++|.+++|.|.+. + ++++           .+.|+..-|    ..+.|+|.++++..++-++
T Consensus       267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             cceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCc
Confidence            222224466899999999872 2 2221           334554444    6777888887777765554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.38  E-value=2.6e-10  Score=95.35  Aligned_cols=170  Identities=16%  Similarity=0.111  Sum_probs=133.0

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CC-eEEEEeCCCCEEEEee-cCCceEEEE
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KD-WVYIYDNQGIELHCLK-VLNKVTRME   97 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~-~i~i~~~~~~~~~~~~-~~~~v~~~~   97 (315)
                      +|.+++..+ .|...|.+...+ ....+.+.+.|.-..+..+++-++.+. || .+-++|..+.++..+. ..+.|.++.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~-~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~  408 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDG-YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK  408 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCC-eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE
Confidence            678888776 466777775444 344555777788888887777777665 66 8999999988876654 458999999


Q ss_pred             EcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC----eEEEEcCCCCcceeEeecc
Q psy9936          98 FLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG----TVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus        98 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~  173 (315)
                      .+|+|+.++.+.....+.++|+.+|.....-+...+-|+.+.|||+++++|.+-.+|    .|++||+.+++...... .
T Consensus       409 vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~  487 (668)
T COG4946         409 VSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P  487 (668)
T ss_pred             EcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C
Confidence            999999999999999999999999976655555667899999999999999987766    79999999887554332 3


Q ss_pred             cccEEEEEECCCCCEEEEee
Q psy9936         174 KAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~~  193 (315)
                      .+--.+.+|.|+|++|..-+
T Consensus       488 ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         488 TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cccccCcccCCCCcEEEEEe
Confidence            44446779999999877654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.37  E-value=1.4e-09  Score=85.78  Aligned_cols=201  Identities=16%  Similarity=0.288  Sum_probs=133.6

Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEccCc--eEE--EEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          15 RMNYTKNGRHLLLGGKRGHVAAFDWVRK--TLA--CEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~--~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      .++.++||+.||+. .|..|.|-.....  ..+  ....  ....-..++|+||+.+||.+. .|+|+++|+.+.++..+
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            36778999999876 4666777654321  111  1222  223457899999999999986 79999999988766654


Q ss_pred             ecC--------CceEEEEEcCCC------ceEEEEcCCCeEEEEEccC-----CeEEEEec--c-CCCCeEEEEEcCCCC
Q psy9936          88 KVL--------NKVTRMEFLPYH------FLLATASEEGYLSWLDTSI-----GKIVSDFS--A-KKGKLSVMTQNPYNA  145 (315)
Q Consensus        88 ~~~--------~~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~~-----~~~~~~~~--~-~~~~v~~~~~~p~~~  145 (315)
                      ...        ..|..+.|.+..      ..|++-..+|.++-|-+..     .+..+.+.  . +...|+++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            421        446666665432      2466666778777776532     23333333  2 466899999999989


Q ss_pred             EEEEEcCC-----------CeEEEEcCCCCcce-----------------------eE---ee---cccccEEEEEECCC
Q psy9936         146 CICLGHRN-----------GTVTMWSPTVQKPL-----------------------AS---LL---CHKAGIQSVAVNHT  185 (315)
Q Consensus       146 ~l~~~~~d-----------~~i~i~d~~~~~~~-----------------------~~---~~---~~~~~i~~~~~sp~  185 (315)
                      +|++||..           .-+..|.+-++.+.                       ..   +.   .....|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            88877532           13556654332210                       00   00   12457899999999


Q ss_pred             CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         186 GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       186 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                      |..||+...+|.|.+|++.+. .+...+..+.
T Consensus       241 g~~La~ih~sG~lsLW~iPsL-~~~~~W~~~e  271 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSL-RLQRSWKQDE  271 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcc-hhhcccchhh
Confidence            999999999999999999988 7777776543

>KOG2041|consensus

Probab=99.33  E-value=1.4e-10  Score=101.59  Aligned_cols=231  Identities=14%  Similarity=0.172  Sum_probs=168.5

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEEe-CCeEEEEeC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~   79 (315)
                      ..+++ +..|.-+.|+.+.+.|-++..+|.|.||-+-.+......-   ...-|.+++|+.+|..++... ||.|.+=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            34566 7889999999999999999999999999988776543322   445689999999998888775 899999888


Q ss_pred             CCCEEEEeecC-CceEEEEEcCCCceEEEEcCCCeEEEEEccCC-------eEEEE----eccCCCCeEEEEE-------
Q psy9936          80 QGIELHCLKVL-NKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-------KIVSD----FSAKKGKLSVMTQ-------  140 (315)
Q Consensus        80 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~----~~~~~~~v~~~~~-------  140 (315)
                      +|..+.-.... .....+.|++|...+..+-.+|.+++||....       .+...    +......+..+.|       
T Consensus       145 dGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~  224 (1189)
T KOG2041|consen  145 DGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP  224 (1189)
T ss_pred             ccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc
Confidence            87765432222 23457889999998888888999999997532       11111    1111223445555       


Q ss_pred             -cCCCCEEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEeeCCC---------cEEEEEccCCCCC
Q psy9936         141 -NPYNACICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAGDS---------QLRIWDVRNLEGP  209 (315)
Q Consensus       141 -~p~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---------~i~iwd~~~~~~~  209 (315)
                       -|+...|+++-.+|.+.+..-.+. .++ .+. -.-.+..+.|+|+|..||+++.+.         .|.+|..-.  ..
T Consensus       225 v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G--~i  300 (1189)
T KOG2041|consen  225 VPPDRPRLAVCYANGRMQIMRSENDPEPV-VVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG--HI  300 (1189)
T ss_pred             CCCCCCEEEEEEcCceehhhhhcCCCCCe-EEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch--hh
Confidence             357789999999999999876554 343 333 236788999999999999998653         466665443  67


Q ss_pred             eeEeccCC-CceeEEEccCCe-EEEEcCCEEE
Q psy9936         210 LNTFRTRT-PINNLAFSQRGL-LATSRGNIVE  239 (315)
Q Consensus       210 ~~~~~~~~-~v~~~~~s~~g~-~~~~~~~~i~  239 (315)
                      +.+++.++ .|++++|-..|+ ++...|+.|.
T Consensus       301 ~gtlkvpg~~It~lsWEg~gLriA~Avdsfiy  332 (1189)
T KOG2041|consen  301 VGTLKVPGSCITGLSWEGTGLRIAIAVDSFIY  332 (1189)
T ss_pred             eEEEecCCceeeeeEEcCCceEEEEEecceEE
Confidence            77777765 599999999995 6666788776

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.32  E-value=1.4e-09  Score=102.99  Aligned_cols=231  Identities=13%  Similarity=0.201  Sum_probs=149.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc---------------C--------ceEEEEec-----------------
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV---------------R--------KTLACEMN-----------------   49 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~---------------~--------~~~~~~~~-----------------   49 (315)
                      +.+|.+++||||+..|+..+.++++.+.+.+               .        |+...+|.                 
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            8899999999999999999888888776522               0        00001110                 


Q ss_pred             --------CCCceeEEEEeecCcEEEEEe----C---CeEEEEeCCCCEEEEeecC-CceEEEEEcCCCceEEEEcC---
Q psy9936          50 --------VMEEVYDIKWLHLETMFAVAQ----K---DWVYIYDNQGIELHCLKVL-NKVTRMEFLPYHFLLATASE---  110 (315)
Q Consensus        50 --------~~~~v~~~~~~~~~~~l~~~~----~---~~i~i~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---  110 (315)
                              ....-..++|-.||.++|++.    .   ..+++|+.+|.....-... +--.+++|-|.|+++|+...   
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~  279 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD  279 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence                    112345688999999999875    2   4799999986533322211 23357899999999998754   


Q ss_pred             CCeEEEEEccCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce--eEeec-ccccEEEEEEC
Q psy9936         111 EGYLSWLDTSIGKIVSDFS----AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL--ASLLC-HKAGIQSVAVN  183 (315)
Q Consensus       111 d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~-~~~~i~~~~~s  183 (315)
                      ...|.+|. ++|-.-..|.    .....|..+.|++|+..||....|. |.+|-..+....  +.+.. ....+..+.|+
T Consensus       280 ~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd  357 (928)
T PF04762_consen  280 RHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWD  357 (928)
T ss_pred             CcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEEC
Confidence            34577776 4454333333    2345799999999999999977665 999998876432  22221 22344558999


Q ss_pred             CCC-CEEEEeeCCCcEEEEEc----cCCC-------------------------------CCeeEeccCCCceeEEEccC
Q psy9936         184 HTG-TYMATSAGDSQLRIWDV----RNLE-------------------------------GPLNTFRTRTPINNLAFSQR  227 (315)
Q Consensus       184 p~g-~~l~~~~~d~~i~iwd~----~~~~-------------------------------~~~~~~~~~~~v~~~~~s~~  227 (315)
                      |.. ..|...+.+|.+..++.    ..+.                               .....+....+|.+++|+++
T Consensus       358 pe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~  437 (928)
T PF04762_consen  358 PEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS  437 (928)
T ss_pred             CCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC
Confidence            863 34555555455443332    1110                               11123334457899999998


Q ss_pred             C--eEEEEcCCEEEecC
Q psy9936         228 G--LLATSRGNIVEFLK  242 (315)
Q Consensus       228 g--~~~~~~~~~i~~~~  242 (315)
                      +  ..+...++.+.+|.
T Consensus       438 ~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  438 NSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CCeEEEEECCCCEEEEE
Confidence            8  56777899888766

>KOG0309|consensus

Probab=99.31  E-value=1.9e-11  Score=107.08  Aligned_cols=225  Identities=19%  Similarity=0.268  Sum_probs=166.2

Q ss_pred             cEEEeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc-CceEEEEecCCC--ceeEEEEeec---CcEEEEEeCCeEEE
Q psy9936           3 KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV-RKTLACEMNVME--EVYDIKWLHL---ETMFAVAQKDWVYI   76 (315)
Q Consensus         3 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~-~~~~~~~~~~~~--~v~~~~~~~~---~~~l~~~~~~~i~i   76 (315)
                      +...+....++..+..+|.|+-+|.++.-| +.+.|++ .+.+...+.|..  .|-.+.|+|.   ...++..+...-.+
T Consensus        17 kslsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaii   95 (1081)
T KOG0309|consen   17 KSLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAII   95 (1081)
T ss_pred             ceeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhh
Confidence            455666688999999999999999988877 6677765 345555555544  4778889885   23455555666778


Q ss_pred             EeC---CCCEEEE--eecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          77 YDN---QGIELHC--LKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        77 ~~~---~~~~~~~--~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      |++   ..+.+..  -+|...++.+.|+|.. ..+++++.|..++.||+++. .++..+..-......++|+.....+.+
T Consensus        96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla  175 (1081)
T KOG0309|consen   96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA  175 (1081)
T ss_pred             hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh
Confidence            887   2333333  3466889999999975 58899999999999999876 455555555556778999985554555


Q ss_pred             EcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCC-CCCeeEeccCCCceeEEEcc
Q psy9936         150 GHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNL-EGPLNTFRTRTPINNLAFSQ  226 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~  226 (315)
                      .+....|.+||++.+ .++..+++|...|+.+.|..- ...+.+++.|++|+.||.... ...-..+....+++...+-|
T Consensus       176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P  255 (1081)
T KOG0309|consen  176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP  255 (1081)
T ss_pred             hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence            566778999999975 678889999999999998764 346789999999999998754 13334445556788888888


Q ss_pred             CC
Q psy9936         227 RG  228 (315)
Q Consensus       227 ~g  228 (315)
                      -|
T Consensus       256 fg  257 (1081)
T KOG0309|consen  256 FG  257 (1081)
T ss_pred             cC
Confidence            65

>KOG4532|consensus

Probab=99.31  E-value=1.1e-09  Score=85.36  Aligned_cols=214  Identities=11%  Similarity=0.014  Sum_probs=143.7

Q ss_pred             EEEEEcC-----CCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeec--CcEEEEEeCCeEEEEeCCCCEE
Q psy9936          14 YRMNYTK-----NGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHL--ETMFAVAQKDWVYIYDNQGIEL   84 (315)
Q Consensus        14 ~~~~~s~-----~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~   84 (315)
                      ..+.|-|     ...+||.|+..|...+|...+.+....+-  +...|.-+.-..+  ..++.+..|.++++.++++...
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            3455555     23488999999999999988766433322  3332222211111  3455666688888888876555


Q ss_pred             EEeecCCc--eEEEEEcCCCceEEEEcCCCeEEEEEccCC-eE-EE-EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 HCLKVLNK--VTRMEFLPYHFLLATASEEGYLSWLDTSIG-KI-VS-DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~-~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ...-|...  +.+++++++++++++.+....|..|.+... +. +. ........-.+..|+.....+|++..||++.||
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence            55445433  789999999999999999999999988643 22 22 122223334667899999999999999999999


Q ss_pred             cCCCCc-ceeE----eecccccEEEEEECCCCC--EEEEeeCCCcEEEEEccCCCCCeeEeccCC---------CceeEE
Q psy9936         160 SPTVQK-PLAS----LLCHKAGIQSVAVNHTGT--YMATSAGDSQLRIWDVRNLEGPLNTFRTRT---------PINNLA  223 (315)
Q Consensus       160 d~~~~~-~~~~----~~~~~~~i~~~~~sp~g~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~v~~~~  223 (315)
                      |++... +...    -..|.+.+..+.|+|-|.  +|...-.-+.+.+-|++++ ...+.+....         .+..-.
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~-~~~q~I~i~~d~~~~~~tq~ifgt~  309 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY-VNHQVIVIPDDVERKHNTQHIFGTN  309 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC-ceeeEEecCcccccccccccccccc
Confidence            998743 2222    235889999999998765  5556656678999999998 5444443221         255555


Q ss_pred             EccCC
Q psy9936         224 FSQRG  228 (315)
Q Consensus       224 ~s~~g  228 (315)
                      |+.++
T Consensus       310 f~~~n  314 (344)
T KOG4532|consen  310 FNNEN  314 (344)
T ss_pred             ccCCC
Confidence            65555

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=5.2e-11  Score=94.48  Aligned_cols=205  Identities=14%  Similarity=0.228  Sum_probs=140.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-----EEEEec-------------CCCceeEEEEeec---CcEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-----LACEMN-------------VMEEVYDIKWLHL---ETMFAV   68 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~-------------~~~~v~~~~~~~~---~~~l~~   68 (315)
                      .+-|+++.|...|.||++|...|.|.+|.-....     ....++             ..+.|..+.|..+   ..+|++
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4678999999999999999988999999754322     111111             2245888999875   357888


Q ss_pred             EeCCeEEEEeCCCC--------------------E-----------------EEEe--------ecCCceEEEEEcCCCc
Q psy9936          69 AQKDWVYIYDNQGI--------------------E-----------------LHCL--------KVLNKVTRMEFLPYHF  103 (315)
Q Consensus        69 ~~~~~i~i~~~~~~--------------------~-----------------~~~~--------~~~~~v~~~~~~~~~~  103 (315)
                      +.|.+|++|.+-.+                    .                 +...        .|..-+.+++|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            88999999986211                    0                 0000        0223467788888877


Q ss_pred             eEEEEcCCCeEEEEEccCCe---EEEEeccCC-----CCeEEEEEcCCC-CEEEEEcCCCeEEEEcCCCCc------cee
Q psy9936         104 LLATASEEGYLSWLDTSIGK---IVSDFSAKK-----GKLSVMTQNPYN-ACICLGHRNGTVTMWSPTVQK------PLA  168 (315)
Q Consensus       104 ~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~-----~~v~~~~~~p~~-~~l~~~~~d~~i~i~d~~~~~------~~~  168 (315)
                      .++++ .|-.|.+|++.-..   .+..++.|.     .-|++..|+|.. +.+...+..|.|++-|+|...      .+.
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            77665 46689999986432   222333343     237888899954 467777889999999998431      111


Q ss_pred             E----------eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC
Q psy9936         169 S----------LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR  216 (315)
Q Consensus       169 ~----------~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  216 (315)
                      .          +.+-...|..+.|+|+|+|+++-+.- +++|||++....|+.+++.|
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechH
Confidence            1          11123578899999999999876554 79999999877899988765

>KOG3914|consensus

Probab=99.28  E-value=3.4e-10  Score=92.67  Aligned_cols=159  Identities=16%  Similarity=0.148  Sum_probs=118.3

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCce----EEEEecCCCceeEEEEeecCcEEEEE-eC---CeEEEEeCC-CC
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT----LACEMNVMEEVYDIKWLHLETMFAVA-QK---DWVYIYDNQ-GI   82 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~-~~---~~i~i~~~~-~~   82 (315)
                      .+..+.++|.++++|++..+....++++....    +..........+.+.|..+.....++ .-   ..+.+|... +.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            44556778999999999888887777765433    33333344555666666654444333 22   356666654 55


Q ss_pred             EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          83 ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      ....+.|...+..++|+||+++++++..|..|++-....-..+..+. +|..-|..++.-++ ..|++++.|+++++||+
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence            55667888999999999999999999999999998877655555554 59999999998664 45899999999999999


Q ss_pred             CCCcceeEee
Q psy9936         162 TVQKPLASLL  171 (315)
Q Consensus       162 ~~~~~~~~~~  171 (315)
                      .+++.+.++.
T Consensus       223 ~sgk~L~t~d  232 (390)
T KOG3914|consen  223 TSGKLLDTCD  232 (390)
T ss_pred             ccCCcccccc
Confidence            9999887665

>KOG2695|consensus

Probab=99.27  E-value=2e-11  Score=97.99  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=131.4

Q ss_pred             EEeec--CcEEEEEeCCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-----eEEEEecc
Q psy9936          58 KWLHL--ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-----KIVSDFSA  130 (315)
Q Consensus        58 ~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~  130 (315)
                      +|+-+  +-.+++|.+..+-+-|+++.....+...+.|.++.|...++++..|+.+|.|..+|++.+     .+.+.+. 
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-  296 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-  296 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-
Confidence            56543  334556667788888988777777777789999999998999999999999999999864     3444443 


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEcCCCeEEEEcCCCCcc---eeEeecccccEEEE--EECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         131 KKGKLSVMTQNP-YNACICLGHRNGTVTMWSPTVQKP---LASLLCHKAGIQSV--AVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       131 ~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~--~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      |.+.|+++..-. ++++|++.+.+|.|.+||++--++   +.++.+|-+.-.-+  ...+....+++++.|...+||.++
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            888899987666 788999999999999999997666   88888887543333  345566688889999999999999


Q ss_pred             CCCCCeeEeccCC-----CceeEEEcc
Q psy9936         205 NLEGPLNTFRTRT-----PINNLAFSQ  226 (315)
Q Consensus       205 ~~~~~~~~~~~~~-----~v~~~~~s~  226 (315)
                      .+ .++.+++...     .+.+++|+.
T Consensus       377 ~g-hLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  377 SG-HLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             cC-ceeeccCCCCccccccccceehhc
Confidence            99 8888887654     256666654

>KOG0280|consensus

Probab=99.25  E-value=2.3e-09  Score=84.57  Aligned_cols=195  Identities=14%  Similarity=0.144  Sum_probs=133.9

Q ss_pred             CCcEEEEEEcC---CCC-EEEEEcCCCeEEEEEccCceEEEEecCCC-------ceeEEEEeecCcEEEEEe-CCeEEEE
Q psy9936          10 QFGIYRMNYTK---NGR-HLLLGGKRGHVAAFDWVRKTLACEMNVME-------EVYDIKWLHLETMFAVAQ-KDWVYIY   77 (315)
Q Consensus        10 ~~~v~~~~~s~---~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~~~i~i~   77 (315)
                      ...+..|.|..   +|. .++-+...|.|.++..........++.-.       ...++.|++.+.-++++. +|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34455666653   444 45556678899999776555444443111       245678888877777664 7887755


Q ss_pred             eCCCCEEE---E-eecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccC-CeEEEE-eccCCCCeEEEEEcC-CCCEEEE
Q psy9936          78 DNQGIELH---C-LKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSI-GKIVSD-FSAKKGKLSVMTQNP-YNACICL  149 (315)
Q Consensus        78 ~~~~~~~~---~-~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~-~~~~~~-~~~~~~~v~~~~~~p-~~~~l~~  149 (315)
                      +.+...+.   . ..|.-+++...|+.. .+++++|+.|+.+..||++. ++.+.. .+.|...|.++.-+| .+.++++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            54332222   2 235567777888764 46899999999999999983 344433 556888899998877 5679999


Q ss_pred             EcCCCeEEEEcCCC-CcceeEeecccccEEEEEECCCC--CEEEEeeCCCcEEEEEccCC
Q psy9936         150 GHRNGTVTMWSPTV-QKPLASLLCHKAGIQSVAVNHTG--TYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       150 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~sp~g--~~l~~~~~d~~i~iwd~~~~  206 (315)
                      |+.|-.|++||.|+ ++++..-. -.+.|+.+.++|.-  .+|+++-.+| .+|-+....
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~  286 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK  286 (339)
T ss_pred             eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence            99999999999995 67776554 45899999999973  3455555554 777777654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.24  E-value=7.4e-08  Score=78.33  Aligned_cols=229  Identities=13%  Similarity=0.120  Sum_probs=157.1

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCC-eEEEEEccCceEEEEecCCCc---eeEEEEeecCcEEEEEe------CCeEEEEe
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRG-HVAAFDWVRKTLACEMNVMEE---VYDIKWLHLETMFAVAQ------KDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg-~i~v~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~------~~~i~i~~   78 (315)
                      ......++.+| .+..++.+-.-| ...+||..+++....+.....   --.-.|++||++|.+..      .|.|-|||
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            44566788999 555667776665 477899999998887764332   22468999999999874      37899999


Q ss_pred             CCCC--EEEEeecC-CceEEEEEcCCCceEEEEcC------------------CCeEEEEEccCCeEEEE--e--ccCCC
Q psy9936          79 NQGI--ELHCLKVL-NKVTRMEFLPYHFLLATASE------------------EGYLSWLDTSIGKIVSD--F--SAKKG  133 (315)
Q Consensus        79 ~~~~--~~~~~~~~-~~v~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~--~--~~~~~  133 (315)
                      ....  .+..+... -....+.+.|||..|+++..                  +.++.+.|..+|+.+..  +  ..|..
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            9732  22223322 34567889999988877631                  23466778888887776  4  23677


Q ss_pred             CeEEEEEcCCCCEEEEEcCCC-------eEEEEcCCCCcceeEee-------cccccEEEEEECCCCCEEEEee-CCCcE
Q psy9936         134 KLSVMTQNPYNACICLGHRNG-------TVTMWSPTVQKPLASLL-------CHKAGIQSVAVNHTGTYMATSA-GDSQL  198 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~~~~-~d~~i  198 (315)
                      .+..++++++|..++..-..|       .+-+++..  ..+..+.       ...+.+-+|+++++|.++++.+ .-+.+
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            899999999998666543332       24444433  2233222       2346788999999998886666 45679


Q ss_pred             EEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCEEEecC
Q psy9936         199 RIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLK  242 (315)
Q Consensus       199 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~i~~~~  242 (315)
                      .+||..++ ..+...... .+..++-.+++.+++++.|.+....
T Consensus       242 ~~~d~~tg-~~~~~~~l~-D~cGva~~~~~f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  242 AVWDAATG-RLLGSVPLP-DACGVAPTDDGFLVSSGQGQLIRLS  283 (305)
T ss_pred             EEEECCCC-CEeeccccC-ceeeeeecCCceEEeCCCccEEEcc
Confidence            99999998 666655444 4778888888877777777765444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.22  E-value=1.7e-08  Score=87.57  Aligned_cols=218  Identities=15%  Similarity=0.135  Sum_probs=122.5

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC-CCEEEEeecCCceEEEE--
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GIELHCLKVLNKVTRME--   97 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~~~~~~~~~~~v~~~~--   97 (315)
                      ++..+++++.+|.++.+|..+|+.+......+.+.+.....++.+++...++.++.||.+ ++.+.......+...+.  
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            355677777788888888888887766654444333222234555555568889999984 44333322221110000  


Q ss_pred             EcC--CCceEEEEcCCCeEEEEEccCCeEEEEeccC------------------------------CCCeEEEE------
Q psy9936          98 FLP--YHFLLATASEEGYLSWLDTSIGKIVSDFSAK------------------------------KGKLSVMT------  139 (315)
Q Consensus        98 ~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------------------------~~~v~~~~------  139 (315)
                      -+|  .+..++.+..++.+..+|+.+|+.+......                              .+.+.++.      
T Consensus       184 ~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       184 ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             CCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence            000  0124445555556666665555433221100                              00000000      


Q ss_pred             -----------EcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccc-cEEEEEECCCCCEEEEeeCCCcEEEEEccCCC
Q psy9936         140 -----------QNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKA-GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE  207 (315)
Q Consensus       140 -----------~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~  207 (315)
                                 ...++..+++++.+|.+..+|..+++.+........ ...+...  .+..|++++.+|.++++|..++ 
T Consensus       264 ~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG-  340 (377)
T TIGR03300       264 LWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG-  340 (377)
T ss_pred             EEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC-
Confidence                       011344566666777777777777766554421111 1112122  3668889999999999999998 


Q ss_pred             CCeeEeccCC-C-ceeEEEccCCeEEEEcCCEEEec
Q psy9936         208 GPLNTFRTRT-P-INNLAFSQRGLLATSRGNIVEFL  241 (315)
Q Consensus       208 ~~~~~~~~~~-~-v~~~~~s~~g~~~~~~~~~i~~~  241 (315)
                      +.+..+..+. + ..+..+..+.+++++.||.|..+
T Consensus       341 ~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       341 SFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence            8888887655 3 34556666667888899988654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914|consensus

Probab=99.22  E-value=2e-10  Score=93.97  Aligned_cols=158  Identities=16%  Similarity=0.174  Sum_probs=109.1

Q ss_pred             eeEEEEeecCcEEEEEe-CCeEEEEeC--CCCEEEE---eecCCceEEEEEcCCCceEEEE---cCCCeEEEEEccCCeE
Q psy9936          54 VYDIKWLHLETMFAVAQ-KDWVYIYDN--QGIELHC---LKVLNKVTRMEFLPYHFLLATA---SEEGYLSWLDTSIGKI  124 (315)
Q Consensus        54 v~~~~~~~~~~~l~~~~-~~~i~i~~~--~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~~d~~~~~~  124 (315)
                      ...+..+|.++++|++. +....+++.  +.+....   .......+++.|..+......+   +....+.+|....+..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44566778899999987 445556655  2221111   2222333444444444333333   4445555665554433


Q ss_pred             EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee-cccccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         125 VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL-CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       125 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                       ..+-+|-+.++.++|+||+++++++..|..|++-.......+..+- ||..-|..++.-++. .|+++|.|+++++||+
T Consensus       145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDI  222 (390)
T ss_pred             -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEec
Confidence             3445799999999999999999999999999998877665566554 799999999997654 5899999999999999


Q ss_pred             cCCCCCeeEec
Q psy9936         204 RNLEGPLNTFR  214 (315)
Q Consensus       204 ~~~~~~~~~~~  214 (315)
                      .++ +.+..+.
T Consensus       223 ~sg-k~L~t~d  232 (390)
T KOG3914|consen  223 TSG-KLLDTCD  232 (390)
T ss_pred             ccC-Ccccccc
Confidence            999 6666554

>KOG1334|consensus

Probab=99.21  E-value=1.8e-10  Score=96.38  Aligned_cols=232  Identities=9%  Similarity=0.152  Sum_probs=163.5

Q ss_pred             CcEEEEEEcC--CCCEEEEEcCCCeEEEEEccC-ceEE---EEecCCCceeEEEEeecC--cEEEEEeCCeEEEEeCCC-
Q psy9936          11 FGIYRMNYTK--NGRHLLLGGKRGHVAAFDWVR-KTLA---CEMNVMEEVYDIKWLHLE--TMFAVAQKDWVYIYDNQG-   81 (315)
Q Consensus        11 ~~v~~~~~s~--~~~~l~~~~~dg~i~v~~~~~-~~~~---~~~~~~~~v~~~~~~~~~--~~l~~~~~~~i~i~~~~~-   81 (315)
                      ..|....|-|  +.+.|++++.||.+++=.+.. +...   ....|.++|.-++.-|+.  .++.+|.|+.+.-+|+.. 
T Consensus       186 ~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~  265 (559)
T KOG1334|consen  186 NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD  265 (559)
T ss_pred             cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence            3444455666  335788999999999876543 3322   233488999999999863  456666799998888742 


Q ss_pred             ---CEEEEeecC-C---ceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCe------EEEEecc------CCCCeEEEEEc
Q psy9936          82 ---IELHCLKVL-N---KVTRMEFLPYH-FLLATASEEGYLSWLDTSIGK------IVSDFSA------KKGKLSVMTQN  141 (315)
Q Consensus        82 ---~~~~~~~~~-~---~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~------~~~~~~~------~~~~v~~~~~~  141 (315)
                         ..+.+.... .   ..+.++..|.. ..+++++.|--+++||.+.-.      .+..+..      ..-.|++++|+
T Consensus       266 ~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys  345 (559)
T KOG1334|consen  266 VPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS  345 (559)
T ss_pred             CccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence               222232222 2   56788999965 589999999999999986421      1222221      23358999999


Q ss_pred             CCCCEEEEEcCCCeEEEEcCCC--C----------cceeE-eecccc--cEEEEEE-CCCCCEEEEeeCCCcEEEEEccC
Q psy9936         142 PYNACICLGHRNGTVTMWSPTV--Q----------KPLAS-LLCHKA--GIQSVAV-NHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       142 p~~~~l~~~~~d~~i~i~d~~~--~----------~~~~~-~~~~~~--~i~~~~~-sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      .++.-|+++-.|-.|+++.-.-  +          ..+.. +++|..  .|.++.| -|...|+++|+.-|.|.||+-.+
T Consensus       346 h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  346 HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            8877677777788899995332  2          12222 667764  4666665 68889999999999999999999


Q ss_pred             CCCCeeEeccCC-CceeEEEccCCeEEEEc--CCEEEecCC
Q psy9936         206 LEGPLNTFRTRT-PINNLAFSQRGLLATSR--GNIVEFLKP  243 (315)
Q Consensus       206 ~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~--~~~i~~~~~  243 (315)
                      + +.+..+.+.. -|+|+.-+|---++|++  |..|++|.|
T Consensus       426 ~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  426 G-EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             h-HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence            8 8888877765 47899988887555543  889999998

>KOG4190|consensus

Probab=99.18  E-value=1e-10  Score=99.59  Aligned_cols=195  Identities=14%  Similarity=0.127  Sum_probs=142.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-------ceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeC-C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-------KTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDN-Q   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~   80 (315)
                      ...|..++--.+.+.+++++.|++|++|.+..       ..+..++. |..+|.++.|..+.+++++ .|+.|++||. -
T Consensus       735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S-cD~giHlWDPFi  813 (1034)
T KOG4190|consen  735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS-CDGGIHLWDPFI  813 (1034)
T ss_pred             HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-ccCcceeecccc
Confidence            45566665555677889999999999998752       22455555 8899999999988877654 5788999997 4


Q ss_pred             CCEEEE---eecCCceEEEEEcCC--CceEEEE-cCCCeEEEEEccCCeEEEEecc-----CCCCeEEEEEcCCCCEEEE
Q psy9936          81 GIELHC---LKVLNKVTRMEFLPY--HFLLATA-SEEGYLSWLDTSIGKIVSDFSA-----KKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        81 ~~~~~~---~~~~~~v~~~~~~~~--~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~  149 (315)
                      +..+..   ....+.+..+..-++  ...++.+ +...+|+++|.+.......++.     ....+.+++..|.|++++.
T Consensus       814 gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa  893 (1034)
T KOG4190|consen  814 GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA  893 (1034)
T ss_pred             cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence            433322   122334444444443  3444444 6788999999998876665543     3455889999999999999


Q ss_pred             EcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEE-EEccCC
Q psy9936         150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI-WDVRNL  206 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~i-wd~~~~  206 (315)
                      +-.+|.|.+.|.++|+.+..++...-....++ .|..+.|+....|.++.+ |....+
T Consensus       894 ~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  894 ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            99999999999999998888775555444444 366778888888888888 887665

>KOG1409|consensus

Probab=99.18  E-value=3e-09  Score=85.67  Aligned_cols=231  Identities=11%  Similarity=0.167  Sum_probs=161.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEE-EccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC----
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAF-DWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG----   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~----   81 (315)
                      .+.++....-|-..-+++.+.|.+++|| ..+.++.-..+.  .+.+++++.+.+....|.++. .|++.-+.+..    
T Consensus        24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk  103 (404)
T KOG1409|consen   24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK  103 (404)
T ss_pred             hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence            4556666677777788899999999999 456666555554  456789999999998898887 68888887621    


Q ss_pred             --CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          82 --IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        82 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                        .....+.|...+..+.|+-...++++.+.|..+..--.+.+..+..+.- ....+++.+.-.  +.+.|...|.|.+-
T Consensus       104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~l  180 (404)
T KOG1409|consen  104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITML  180 (404)
T ss_pred             cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEE
Confidence              1112245678999999999899999999987766555555543322110 001111111111  45566666766655


Q ss_pred             cCC--CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC--eEEEEc
Q psy9936         160 SPT--VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG--LLATSR  234 (315)
Q Consensus       160 d~~--~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g--~~~~~~  234 (315)
                      .+.  .-.++.++.+|.+.+.+++|.|....|.+|..|..+.+||+-.......+...|. .|..+..-+--  ++.+..
T Consensus       181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~e  260 (404)
T KOG1409|consen  181 KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGE  260 (404)
T ss_pred             EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccC
Confidence            433  3467888999999999999999999999999999999999976533444455554 47666665544  355567


Q ss_pred             CCEEEecCC
Q psy9936         235 GNIVEFLKP  243 (315)
Q Consensus       235 ~~~i~~~~~  243 (315)
                      ||.|..|+.
T Consensus       261 dg~i~~w~m  269 (404)
T KOG1409|consen  261 DGGIVVWNM  269 (404)
T ss_pred             CCeEEEEec
Confidence            999999987

>KOG1920|consensus

Probab=99.15  E-value=2e-08  Score=93.15  Aligned_cols=196  Identities=12%  Similarity=0.143  Sum_probs=136.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC-CeEEEEeC-----CCCE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK-DWVYIYDN-----QGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~i~i~~~-----~~~~   83 (315)
                      ++.|.++.|..++..++.+...|.|.+.|.++......-.....|.+++|+||+..++.... +++.+-+-     ..+.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            35789999999999999999999999999888776655557788999999999999987764 55555331     0010


Q ss_pred             E-------------------EEeec----------------------CCceEEEEEcCCCceEEEE-----cCCCeEEEE
Q psy9936          84 L-------------------HCLKV----------------------LNKVTRMEFLPYHFLLATA-----SEEGYLSWL  117 (315)
Q Consensus        84 ~-------------------~~~~~----------------------~~~v~~~~~~~~~~~l~~~-----~~d~~i~~~  117 (315)
                      +                   ..+..                      ...=.++.|--||.++|+.     .....|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0                   01110                      0112348899999999884     233789999


Q ss_pred             EccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE---cCCCeEEEEcCCC---CcceeEeecccccEEEEEECCCCCEEEE
Q psy9936         118 DTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG---HRNGTVTMWSPTV---QKPLASLLCHKAGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~---~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~sp~g~~l~~  191 (315)
                      |.+ |..-..-....+.-.+++|-|.|..+++-   ..|+.|.+|.-+.   ++....+......+..++|+.++..||+
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            976 54433333333445679999999998875   3456799988542   3333333333445899999999999987


Q ss_pred             ---eeCCCcEEEEEccCC
Q psy9936         192 ---SAGDSQLRIWDVRNL  206 (315)
Q Consensus       192 ---~~~d~~i~iwd~~~~  206 (315)
                         ......|++|-+.+.
T Consensus       307 ~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  307 VTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eecccccceEEEEEecCe
Confidence               444445999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.12  E-value=1e-07  Score=77.12  Aligned_cols=184  Identities=14%  Similarity=0.148  Sum_probs=122.1

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEe-ecC----CceE
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCL-KVL----NKVT   94 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~-~~~----~~v~   94 (315)
                      ++..+++++.++.|+.||..+|+.+..+.....+.......++.+++...++.++.+|. ++..+... ...    ....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            56677777889999999999999988877655544434445666666667889999996 56665553 221    1122


Q ss_pred             EEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC----------eEEEEEcCCCCEEEEEcCCCe-EEEEcCCC
Q psy9936          95 RMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK----------LSVMTQNPYNACICLGHRNGT-VTMWSPTV  163 (315)
Q Consensus        95 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----------v~~~~~~p~~~~l~~~~~d~~-i~i~d~~~  163 (315)
                      .......+..++++..++.|..+|+.+|+.+.........          +..-....++ .++.++.++. +.+ |+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t  192 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT  192 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT
T ss_pred             ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCC
Confidence            2333334778888888999999999999988777653322          1122222344 6666666774 555 9999


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCe
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL  210 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~  210 (315)
                      ++.+....  ...+.. ...+++..|+.++.++.+..||++++ +.+
T Consensus       193 g~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG-~~~  235 (238)
T PF13360_consen  193 GEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTG-KVV  235 (238)
T ss_dssp             TEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTT-EEE
T ss_pred             CCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCC-CEE
Confidence            98664332  222222 13466778888889999999999998 543

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.12  E-value=4.2e-08  Score=77.57  Aligned_cols=160  Identities=14%  Similarity=0.203  Sum_probs=109.6

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--------CCCceeEEEEeec-------CcEEEEEeCCeEEEE
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--------VMEEVYDIKWLHL-------ETMFAVAQKDWVYIY   77 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--------~~~~v~~~~~~~~-------~~~l~~~~~~~i~i~   77 (315)
                      -+.++||||+.+||.+...|+|+++|+....+. .+.        ....|-.+.|.+.       ..+|+...+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            378999999999999999999999998765433 332        1235666777653       256777778776666


Q ss_pred             eCC------CCEEEEee----cCCceEEEEEcCCCceEEEEcCC----C-------eEEEEEccCCeEEE----------
Q psy9936          78 DNQ------GIELHCLK----VLNKVTRMEFLPYHFLLATASEE----G-------YLSWLDTSIGKIVS----------  126 (315)
Q Consensus        78 ~~~------~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d----~-------~i~~~d~~~~~~~~----------  126 (315)
                      -+.      -.+.+.+.    ....|.++.++|..++|++|+..    +       -+..|.+-++.+-.          
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            541      12333332    23689999999999888877531    1       25556543321100          


Q ss_pred             -------------E---e---ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc
Q psy9936         127 -------------D---F---SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus       127 -------------~---~---~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  173 (315)
                                   .   +   ......|..|..||||..||+...+|.|.+|++.+-++...+.-+
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence                         0   0   112456889999999999999999999999999987777666533

>KOG1832|consensus

Probab=99.11  E-value=4.4e-11  Score=106.89  Aligned_cols=204  Identities=12%  Similarity=0.168  Sum_probs=148.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe---CCeEEEEeCCC--CE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ---KDWVYIYDNQG--IE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~~~i~i~~~~~--~~   83 (315)
                      +...+|++|+.+.++|++|+-.|.|++|++.+|......+ |..+++.+.-+.+|..+.+++   .--.-+|+...  ..
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence            5678999999999999999999999999999999888877 889999999888988776654   23577898843  22


Q ss_pred             EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe-cc---CCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          84 LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF-SA---KKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        84 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~---~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      .+.   ...-.++.|+.....-+.|+......+||+.++.++.++ .+   ....-+...|+|+..+++-   ||  .+|
T Consensus      1181 ~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLW 1252 (1516)
T KOG1832|consen 1181 RHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLW 1252 (1516)
T ss_pred             ccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eee
Confidence            222   245567888876555556666667999999998766652 21   1222366789998887653   44  479


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      |.+..+.++.|......+ .-.|+|.|.-++..+     .|||+++. +.++.++.- .-+.+.|+..|-
T Consensus      1253 DvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF-~lLh~VP~L-dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1253 DVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTF-KLLHSVPSL-DQCAVTFNSTGD 1314 (1516)
T ss_pred             eeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHH-HHHhcCccc-cceEEEeccCcc
Confidence            999888887776444222 346999999888765     48999998 766655432 235677888873

>KOG1064|consensus

Probab=99.11  E-value=6.7e-10  Score=106.07  Aligned_cols=181  Identities=17%  Similarity=0.291  Sum_probs=139.2

Q ss_pred             CCCceeEEEEeecCcEEEEE-eCCeEEEEeC-CCCEEEEeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEE
Q psy9936          50 VMEEVYDIKWLHLETMFAVA-QKDWVYIYDN-QGIELHCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV  125 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  125 (315)
                      +-..|.++.=+|...+.++| +||.+++|.- .+..+.+...  ...|+.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            55677788778866555555 5999999987 4555555543  2678899999999999999999999999986 6777


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEc---CCCeEEEEcCCC--CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         126 SDFSAKKGKLSVMTQNPYNACICLGH---RNGTVTMWSPTV--QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       126 ~~~~~~~~~v~~~~~~p~~~~l~~~~---~d~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                      ...+.|....+.+.|-.  ..+++++   .++.+.+||..-  ...+-. .+|.+.++++++.|..+.|++|+.+|.|++
T Consensus      2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            77888988888888865  5566654   467999999542  222222 689999999999999999999999999999


Q ss_pred             EEccCCCCCeeEeccCCCceeEEEccCC-eEEEEcCCEEEecCC
Q psy9936         201 WDVRNLEGPLNTFRTRTPINNLAFSQRG-LLATSRGNIVEFLKP  243 (315)
Q Consensus       201 wd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~~~~~~~~i~~~~~  243 (315)
                      ||++.. ++++.++.        +.... .+.++..|.+++|+.
T Consensus      2363 ~D~rqr-ql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2363 FDIRQR-QLRHTFQA--------LDTREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             eehHHH-HHHHHhhh--------hhhhheeeccCcccceEEEEc
Confidence            999987 66666554        33222 344556899999987

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.10  E-value=4.8e-07  Score=73.67  Aligned_cols=177  Identities=15%  Similarity=0.141  Sum_probs=121.3

Q ss_pred             EEEEEEc-CCCCEEEEEcCCCeEEEEEccCceEEEEecC------CCceeEEEEeecCcEEEEEeC---------CeEEE
Q psy9936          13 IYRMNYT-KNGRHLLLGGKRGHVAAFDWVRKTLACEMNV------MEEVYDIKWLHLETMFAVAQK---------DWVYI   76 (315)
Q Consensus        13 v~~~~~s-~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~---------~~i~i   76 (315)
                      ...+++. +++.++++ ... .+.++|..+++.......      ....+++++.|+|++.++...         +.|+.
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677777 67655554 444 466679988876544432      235889999999998777642         45777


Q ss_pred             EeCCCCEEEEeecCCceEEEEEcCCCceEE-EEcCCCeEEEEEccCC-e------EEEEeccCCCCeEEEEEcCCCCEEE
Q psy9936          77 YDNQGIELHCLKVLNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSIG-K------IVSDFSAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~-~------~~~~~~~~~~~v~~~~~~p~~~~l~  148 (315)
                      ++..+............+.++|+|+++.|+ +-+..+.|..|++... .      ....+....+....+++.++|++.+
T Consensus       120 ~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v  199 (246)
T PF08450_consen  120 IDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV  199 (246)
T ss_dssp             EETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred             ECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence            887744333444557789999999998765 5577888999998632 1      1222222233478899999999888


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecccccEEEEEE-CCCCCEEEEe
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV-NHTGTYMATS  192 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-sp~g~~l~~~  192 (315)
                      +....+.|.++|.+ ++.+..+......+++++| -|+.+.|+..
T Consensus       200 a~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  200 ADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            87788999999998 8888888765568999999 4676655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066|consensus

Probab=99.09  E-value=1e-08  Score=91.15  Aligned_cols=175  Identities=14%  Similarity=0.183  Sum_probs=130.3

Q ss_pred             eeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC
Q psy9936          54 VYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK  132 (315)
Q Consensus        54 v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  132 (315)
                      +.+++++  +++|+.|. +|.|++++..+.....+.|...      ..+|.++++|+.||+|.|..+.+.+...++.- .
T Consensus        42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~  112 (846)
T KOG2066|consen   42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-K  112 (846)
T ss_pred             HHHHHhh--cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-C
Confidence            4444443  56777776 8899999987765333333322      55799999999999999999988877776653 3


Q ss_pred             CCeEEEEEcCC-----CCEEEEEcCCCeEEEEcCCC---CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         133 GKLSVMTQNPY-----NACICLGHRNGTVTMWSPTV---QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       133 ~~v~~~~~~p~-----~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      .++.+++++|+     .+.+++||..| +.++.-+-   ...+ .+....++|.++.|.  |+++|-++.+| |+|||+.
T Consensus       113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~  187 (846)
T KOG2066|consen  113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTP  187 (846)
T ss_pred             CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEecc
Confidence            57899999998     45889999888 77776431   2222 344567899999995  78999998887 9999999


Q ss_pred             CCCCCeeEeccCC-------CceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         205 NLEGPLNTFRTRT-------PINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       205 ~~~~~~~~~~~~~-------~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +. +.+..++.+.       -...+.|.++..++.+.+.+|++...
T Consensus       188 ~~-~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I  232 (846)
T KOG2066|consen  188 TR-QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSI  232 (846)
T ss_pred             cc-ceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEE
Confidence            87 6666665433       14789999999999998888885543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.08  E-value=1.8e-07  Score=81.33  Aligned_cols=218  Identities=17%  Similarity=0.152  Sum_probs=133.7

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEeecCCceEEEEEc
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCLKVLNKVTRMEFL   99 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~~~~~~v~~~~~~   99 (315)
                      .+..+++++.+|.+..+|..+|+.+........+..--...++.+++.+.++.++.+|. +++.+........+.+.-..
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v  143 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV  143 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence            35678888889999999999999887766444332211122455555556899999998 45555444433333221111


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeE-----EEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc
Q psy9936         100 PYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLS-----VMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK  174 (315)
Q Consensus       100 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-----~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  174 (315)
                       .+..++.++.++.+..||..+|+.+..+........     ....  .+..++.+..++.+..+|+++++.+.+.....
T Consensus       144 -~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       144 -ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             -ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence             245677788899999999999988776653322111     1111  12467788888999999999998665433110


Q ss_pred             --c--c---EEEEEECC--CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         175 --A--G---IQSVAVNH--TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       175 --~--~---i~~~~~sp--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                        +  .   ...+.-+|  .+..+++++.+|.++.||..++ +.+...... ....+....+..++++.++.+..++.
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~-~~~~p~~~~~~vyv~~~~G~l~~~d~  296 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDAS-SYQGPAVDDNRLYVTDADGVVVALDR  296 (377)
T ss_pred             CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccC-CccCceEeCCEEEEECCCCeEEEEEC
Confidence              0  0   00011111  2457888888999999999988 665554422 22233333333466666777776655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.08  E-value=1.7e-07  Score=75.87  Aligned_cols=208  Identities=17%  Similarity=0.160  Sum_probs=128.6

Q ss_pred             CCeEEEEEccCceEEEEecCCCce---eEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEeecCCceEEEEEcCCCceEE
Q psy9936          31 RGHVAAFDWVRKTLACEMNVMEEV---YDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCLKVLNKVTRMEFLPYHFLLA  106 (315)
Q Consensus        31 dg~i~v~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~  106 (315)
                      +|+|..||..+|+.+.........   .+.....++.+++...++.|+.||. +++.+........+.... ...+..++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence            688999999999988887642222   2223334555555557899999998 566555555433322222 22344566


Q ss_pred             EEcCCCeEEEEEccCCeEEEEe-ccCC---CCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccccc------
Q psy9936         107 TASEEGYLSWLDTSIGKIVSDF-SAKK---GKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAG------  176 (315)
Q Consensus       107 ~~~~d~~i~~~d~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------  176 (315)
                      +++.++.+..+|..+|+.+... ....   .....+....++..++.+..++.|..+|+++|+.+.........      
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  160 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS  160 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence            6778889999999999988874 3221   11222233334778888888999999999999988777653321      


Q ss_pred             ----EEEEEECCCCCEEEEeeCCCc-EEEEEccCCCCCeeEeccCCCceeEEEccCC-eEEEEcCCEEEecCC
Q psy9936         177 ----IQSVAVNHTGTYMATSAGDSQ-LRIWDVRNLEGPLNTFRTRTPINNLAFSQRG-LLATSRGNIVEFLKP  243 (315)
Q Consensus       177 ----i~~~~~sp~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~~~~~~~~i~~~~~  243 (315)
                          +..-....++ .++.++.++. +.+ |+.++ +.+.... ...+..+....++ .++.+.++.+..+++
T Consensus       161 ~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg-~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  161 SFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATG-EKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             EETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTT-EEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred             eecccccceEEECC-EEEEEcCCCeEEEE-ECCCC-CEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence                1222223345 6767777775 555 99998 5444333 2233332223334 455556899988876

...

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.05  E-value=2.9e-08  Score=86.16  Aligned_cols=184  Identities=14%  Similarity=0.072  Sum_probs=127.3

Q ss_pred             CCcEEEEEEcCCCCEEEEE---cCC-CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CC--eEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLG---GKR-GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KD--WVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~---~~d-g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~~~~~   81 (315)
                      ...+..-+|+|+++.++..   ... ..++++++.+++........+.-...+|+|||+.|+.+.  +|  .|+++|+.+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            5667778899999876644   222 469999999998877777666677789999999988775  44  688889877


Q ss_pred             CEEEEeecC-CceEEEEEcCCCceEEEEcC-CC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC-Ce-
Q psy9936          82 IELHCLKVL-NKVTRMEFLPYHFLLATASE-EG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN-GT-  155 (315)
Q Consensus        82 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~~-  155 (315)
                      +....+.+. +.-..-.|+|+|+.++..+. .|  .|.++|+..+.. ..+....+.-..-.|+|||++|+..+.. |. 
T Consensus       272 ~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~  350 (425)
T COG0823         272 KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW  350 (425)
T ss_pred             CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCce
Confidence            766555554 33347889999998877754 33  377777775544 3333333333367899999988877643 43 


Q ss_pred             -EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCC
Q psy9936         156 -VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD  195 (315)
Q Consensus       156 -i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d  195 (315)
                       |.+.|+.++..++.+. +........|.|+|..+...+..
T Consensus       351 ~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         351 DIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             eeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence             7777777665444443 44445567889999877765543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.04  E-value=1.4e-07  Score=81.02  Aligned_cols=237  Identities=13%  Similarity=0.132  Sum_probs=135.9

Q ss_pred             cCCCCEEEEEc---------CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeec
Q psy9936          19 TKNGRHLLLGG---------KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKV   89 (315)
Q Consensus        19 s~~~~~l~~~~---------~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~   89 (315)
                      |||+++++...         ..+.+.|||+.+++..........+....|+|+|+.++...++.|++++..+.....+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~   80 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT   80 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence            68999888642         246799999999876655545677899999999999999999999999986555555443


Q ss_pred             C-------------------CceEEEEEcCCCceEEEEcCCC------------------------------------eE
Q psy9936          90 L-------------------NKVTRMEFLPYHFLLATASEEG------------------------------------YL  114 (315)
Q Consensus        90 ~-------------------~~v~~~~~~~~~~~l~~~~~d~------------------------------------~i  114 (315)
                      .                   ..-..+-||||+++|+....|.                                    .+
T Consensus        81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l  160 (353)
T PF00930_consen   81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSL  160 (353)
T ss_dssp             --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEE
T ss_pred             ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEE
Confidence            2                   2235688999999888653221                                    13


Q ss_pred             EEEEccCCeEEE--Ee---ccCCCCeEEEEEcCCCCEEEE--EcCC---CeEEEEcCCCCcceeEee-cccccE---EEE
Q psy9936         115 SWLDTSIGKIVS--DF---SAKKGKLSVMTQNPYNACICL--GHRN---GTVTMWSPTVQKPLASLL-CHKAGI---QSV  180 (315)
Q Consensus       115 ~~~d~~~~~~~~--~~---~~~~~~v~~~~~~p~~~~l~~--~~~d---~~i~i~d~~~~~~~~~~~-~~~~~i---~~~  180 (315)
                      .++|+.+++...  ..   ......+..+.|.++++.|+.  .+++   ..+.+.|..++.....+. ...++|   ..+
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~  240 (353)
T PF00930_consen  161 FVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPP  240 (353)
T ss_dssp             EEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEE
T ss_pred             EEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccc
Confidence            345555443221  11   112334778899999883433  2333   257777887765433332 122332   245


Q ss_pred             EEC-CCCC-EEEEeeCCCcEE--EEEccCCCCCeeEec-cCCCcee-EEEccCCe---EEEEc-------------C--C
Q psy9936         181 AVN-HTGT-YMATSAGDSQLR--IWDVRNLEGPLNTFR-TRTPINN-LAFSQRGL---LATSR-------------G--N  236 (315)
Q Consensus       181 ~~s-p~g~-~l~~~~~d~~i~--iwd~~~~~~~~~~~~-~~~~v~~-~~~s~~g~---~~~~~-------------~--~  236 (315)
                      .|. +++. +|.....+|.-+  +++..++ . ...+. +.-.|.. +.|++++.   +++..             +  +
T Consensus       241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~-~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  241 HFLGPDGNEFLWISERDGYRHLYLYDLDGG-K-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EE-TTTSSEEEEEEETTSSEEEEEEETTSS-E-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccCCCCEEEEEEEcCCCcEEEEEccccc-c-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            554 6655 555555777544  4455443 2 33333 2334644 56676651   23332             1  2


Q ss_pred             EEEecCC----C-ceeeccccccccc
Q psy9936         237 IVEFLKP----P-EINFEPRRKANKA  257 (315)
Q Consensus       237 ~i~~~~~----~-~~~~~~~~~~~~~  257 (315)
                      .++....    . .+.|||++++++.
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEE
Confidence            3332222    3 6888888887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1409|consensus

Probab=99.03  E-value=1.5e-08  Score=81.67  Aligned_cols=195  Identities=16%  Similarity=0.275  Sum_probs=138.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC----ceEEEE-ecCCCceeEEEEeecCcEEEEEeCCeEEEEeC--CCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR----KTLACE-MNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN--QGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~----~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~--~~~   82 (315)
                      ..+++++.++++...|++|-.+|++.-+.+..    ....+. +.|...+..+-|+-....+++.+.++-..|..  .+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            67889999999999999999999998886542    222222 33778899999988777777776444445543  122


Q ss_pred             EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc--CCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          83 ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS--IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      .+-.........++.+.-.  +...|...|.|....+.  .-.++.++.+|.+.+.+++|.|....|++|..|..+.+||
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             cccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence            1111111111111222111  45566666666655443  3467888999999999999999999999999999999999


Q ss_pred             CCCCc-ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         161 PTVQK-PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       161 ~~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +--.+ ....+.+|...|..+...+--+.|.+++.||.|.+|+++..
T Consensus       226 igg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  226 IGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            87543 34466789999988888888889999999999999998753

>PRK02888 nitrous-oxide reductase; Validated

Probab=99.00  E-value=1.2e-07  Score=84.15  Aligned_cols=214  Identities=11%  Similarity=0.030  Sum_probs=136.6

Q ss_pred             EEEcCCCCEEEE-EcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C----CeEEEEeCCCCE-EEEee
Q psy9936          16 MNYTKNGRHLLL-GGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K----DWVYIYDNQGIE-LHCLK   88 (315)
Q Consensus        16 ~~~s~~~~~l~~-~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~----~~i~i~~~~~~~-~~~~~   88 (315)
                      +-++|||+.+.. .-..+.+.+.|.++.+...++...+....+.++|+|+++.+++ +    .++...+..... +..+.
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            344566665432 2234677888988888877777666778889999999887774 1    234443332111 11111


Q ss_pred             cCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CCeEEEEcCC
Q psy9936          89 VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-----GKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NGTVTMWSPT  162 (315)
Q Consensus        89 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~i~d~~  162 (315)
                       ...+  -++.++|++...+  ++.|.++|..+     ...+..+.. ......+.++|||+++++++. +.++.|+|+.
T Consensus       278 -i~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        278 -IARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             -hHHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence             0000  1345577766653  56899999987     345555543 445788999999998877654 8899999998


Q ss_pred             CCcc------------eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC---------CCCeeEeccCCCcee
Q psy9936         163 VQKP------------LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL---------EGPLNTFRTRTPINN  221 (315)
Q Consensus       163 ~~~~------------~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~  221 (315)
                      +.+.            +.+..- .......+|.++|....+.-.|..|..|++...         ...+..+..|..+-.
T Consensus       352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh  430 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH  430 (635)
T ss_pred             hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccce
Confidence            7542            333332 233456789999988878889999999998761         134444555554433


Q ss_pred             EEE------ccCCeEEEEcCC
Q psy9936         222 LAF------SQRGLLATSRGN  236 (315)
Q Consensus       222 ~~~------s~~g~~~~~~~~  236 (315)
                      +.-      .|||.++++.+.
T Consensus       431 ~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        431 NHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             eeecCCCcCCCCCCEEEEccc
Confidence            333      678887776543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=99.00  E-value=1.3e-06  Score=76.27  Aligned_cols=221  Identities=14%  Similarity=0.136  Sum_probs=129.8

Q ss_pred             EEEEcCCCCEEEEEcCC----------C-eEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC
Q psy9936          15 RMNYTKNGRHLLLGGKR----------G-HVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI   82 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~d----------g-~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~   82 (315)
                      .++.+|.|-.||....+          . .|.||+. .|+++..+. ..+.+.++.|+.+..++++..+|.+++||+.|.
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            45667777777665333          1 4899985 455555555 348899999999999999999999999999766


Q ss_pred             EEEEeec---CCce-----EEEEEcCCCceEEEEcCCCeEEEEEccCCe-EEEEeccCCCC---------eE-EEEEcCC
Q psy9936          83 ELHCLKV---LNKV-----TRMEFLPYHFLLATASEEGYLSWLDTSIGK-IVSDFSAKKGK---------LS-VMTQNPY  143 (315)
Q Consensus        83 ~~~~~~~---~~~v-----~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~---------v~-~~~~~p~  143 (315)
                      ....+..   ...|     ....+..+|  ++.-..++.+.+..-.... ....+..-...         .. ...++.+
T Consensus       112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~  189 (410)
T PF04841_consen  112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD  189 (410)
T ss_pred             eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC
Confidence            5111111   1122     222333345  4444445555554322211 11111100000         00 0223344


Q ss_pred             CCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--CCcee
Q psy9936         144 NACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--TPINN  221 (315)
Q Consensus       144 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~  221 (315)
                      ....+....++.+.+.+-...+.   +. ..+++..+++||+|+++|.-..+|.+.+....-. +.+..+...  ..+..
T Consensus       190 ~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~  264 (410)
T PF04841_consen  190 RVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQ  264 (410)
T ss_pred             cceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcE
Confidence            44444444455555444332211   22 2468999999999999999999999999887655 666666655  46788


Q ss_pred             EEEccCCeEEEEcCCEEEecCC
Q psy9936         222 LAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       222 ~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +.|..+.-++......+....+
T Consensus       265 ~~WCG~dav~l~~~~~l~lvg~  286 (410)
T PF04841_consen  265 MAWCGNDAVVLSWEDELLLVGP  286 (410)
T ss_pred             EEEECCCcEEEEeCCEEEEECC
Confidence            8888876555444555554444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4532|consensus

Probab=98.99  E-value=8.7e-08  Score=74.92  Aligned_cols=171  Identities=8%  Similarity=-0.003  Sum_probs=115.8

Q ss_pred             EEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeC-CeEEEEeCCC--CEEEE---eecCCceEEEE
Q psy9936          25 LLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQK-DWVYIYDNQG--IELHC---LKVLNKVTRME   97 (315)
Q Consensus        25 l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-~~i~i~~~~~--~~~~~---~~~~~~v~~~~   97 (315)
                      +..++.|.++++.+++.+....... ..-.++++.+++|++++++.+| ..|..|.++.  ..+..   ......-.+..
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            3345677777877766544332222 1123889999999999998775 6899998843  22222   22335667889


Q ss_pred             EcCCCceEEEEcCCCeEEEEEccCCeEEE-----EeccCCCCeEEEEEcCCCC--EEEEEcCCCeEEEEcCCCCcceeEe
Q psy9936          98 FLPYHFLLATASEEGYLSWLDTSIGKIVS-----DFSAKKGKLSVMTQNPYNA--CICLGHRNGTVTMWSPTVQKPLASL  170 (315)
Q Consensus        98 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-----~~~~~~~~v~~~~~~p~~~--~l~~~~~d~~i~i~d~~~~~~~~~~  170 (315)
                      |+.....+|++..||++.|||++......     +-..|.+.+..+.|+|.|.  +|+..-.-+.+.+.|+++++..+.+
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            99999999999999999999998653322     2235888999999999775  5555555678999999998655444


Q ss_pred             ec-------cc-ccEEEEEECCCCCEEEEeeCC
Q psy9936         171 LC-------HK-AGIQSVAVNHTGTYMATSAGD  195 (315)
Q Consensus       171 ~~-------~~-~~i~~~~~sp~g~~l~~~~~d  195 (315)
                      ..       |. ..|..-.|+.++.-+.+.+.+
T Consensus       291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  291 VIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             ecCccccccccccccccccccCCCcccccccch
Confidence            32       22 236666666666555444433

>KOG2695|consensus

Probab=98.97  E-value=4e-09  Score=84.98  Aligned_cols=146  Identities=12%  Similarity=0.113  Sum_probs=113.8

Q ss_pred             EEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCC------CCEEEEeecCCceEEEEE
Q psy9936          26 LLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ------GIELHCLKVLNKVTRMEF   98 (315)
Q Consensus        26 ~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~------~~~~~~~~~~~~v~~~~~   98 (315)
                      ++.+.+-.|-+-|+++|-. +.+.....|.++.|...+.++..|. +|.|..+|+.      +...+.+-|...|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            3344556688888887753 3445777899999998888887776 8999999983      345677888899999887


Q ss_pred             cC-CCceEEEEcCCCeEEEEEccCCeE---EEEeccCCCCeE--EEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec
Q psy9936          99 LP-YHFLLATASEEGYLSWLDTSIGKI---VSDFSAKKGKLS--VMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC  172 (315)
Q Consensus        99 ~~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~v~--~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  172 (315)
                      .. ++.+|++.+.+|+|.+||++--+.   +.++.+|...-.  -+-.++....+++++.|...+||.++++..+.+++.
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            77 678899999999999999986555   888888865322  234456666888899999999999999998888763

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.97  E-value=1.9e-09  Score=60.51  Aligned_cols=38  Identities=29%  Similarity=0.643  Sum_probs=36.2

Q ss_pred             cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEE
Q psy9936         165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD  202 (315)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd  202 (315)
                      +++.++.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.95  E-value=1.2e-08  Score=81.27  Aligned_cols=194  Identities=14%  Similarity=0.184  Sum_probs=133.9

Q ss_pred             CCcEEEEEEcCCCC--EEEEEcCCCeEEEEEccCceE-------------------------------------EE----
Q psy9936          10 QFGIYRMNYTKNGR--HLLLGGKRGHVAAFDWVRKTL-------------------------------------AC----   46 (315)
Q Consensus        10 ~~~v~~~~~s~~~~--~l~~~~~dg~i~v~~~~~~~~-------------------------------------~~----   46 (315)
                      ...|..+.|-.++.  .++..+.|.+|++|.+....+                                     +.    
T Consensus        85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~  164 (460)
T COG5170          85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC  164 (460)
T ss_pred             HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence            45677888866543  556667899999998643210                                     00    


Q ss_pred             -Ee-c-CCCceeEEEEeecCcEEEEEeCCeEEEEeCC--C--CEEEEeecC------CceEEEEEcCC-CceEEEEcCCC
Q psy9936          47 -EM-N-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ--G--IELHCLKVL------NKVTRMEFLPY-HFLLATASEEG  112 (315)
Q Consensus        47 -~~-~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~--~--~~~~~~~~~------~~v~~~~~~~~-~~~l~~~~~d~  112 (315)
                       .+ . |.--+++++|+.|...+.++.+=.|.+|+++  .  ..+.-++.+      .-|++..|+|. .+.+...+..|
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence             01 1 3345788999999999999989999999973  2  223333322      45788999997 45677778899


Q ss_pred             eEEEEEccCCeE----EEE------------eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC-cceeEeeccc-
Q psy9936         113 YLSWLDTSIGKI----VSD------------FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ-KPLASLLCHK-  174 (315)
Q Consensus       113 ~i~~~d~~~~~~----~~~------------~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~-  174 (315)
                      .|++-|++....    ...            +..-...|..+.|+|+|+++++-+. -++.+||.+.. .++.++.-|. 
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence            999999984311    011            1122345888999999999987654 58999998864 5777775443 


Q ss_pred             -----------ccE---EEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         175 -----------AGI---QSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       175 -----------~~i---~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                                 ..|   ..+.||-|...+.+|+..+..-+|-..
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                       122   467899999999999988877777643

>KOG0309|consensus

Probab=98.95  E-value=5.4e-09  Score=92.12  Aligned_cols=199  Identities=14%  Similarity=0.209  Sum_probs=144.4

Q ss_pred             EEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC--CCEEEEeecC--CceEEEEEcCCC--ceEEEEcCCCeEEEEE
Q psy9936          45 ACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ--GIELHCLKVL--NKVTRMEFLPYH--FLLATASEEGYLSWLD  118 (315)
Q Consensus        45 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~--~~~~~~~~~~--~~v~~~~~~~~~--~~l~~~~~d~~i~~~d  118 (315)
                      ...+...+++..+..+|.|+-++.++.-.+++.|++  ......+.|.  -.|....|+|..  .+-++......-.+|+
T Consensus        18 slsl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   18 SLSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             eeEEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            334556678888999999998888887667777773  4555566665  346778888763  3344444455667888


Q ss_pred             ccCC---eEEEEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEee
Q psy9936         119 TSIG---KIVSDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       119 ~~~~---~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~  193 (315)
                      +...   .....+.+|...++.+.|+|... .+++++.|..+..||+++. .++..+..-......++|+--...+.+.+
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            7632   33445678999999999999655 8899999999999999985 45666655455667899987655555666


Q ss_pred             CCCcEEEEEccCCCCCeeEeccCC-CceeEEEccC--C-eEEEEcCCEEEecCC
Q psy9936         194 GDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQR--G-LLATSRGNIVEFLKP  243 (315)
Q Consensus       194 ~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~--g-~~~~~~~~~i~~~~~  243 (315)
                      ..+.|++||++.+..++..++.|- .++.+.|..-  + .+..+.|++++.|+-
T Consensus       178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence            777899999998878999998875 4677777653  2 355567888886654

>KOG1912|consensus

Probab=98.94  E-value=1.9e-07  Score=83.15  Aligned_cols=227  Identities=13%  Similarity=0.121  Sum_probs=156.0

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecC-----------c-EEEEEe-CCeEEEEe
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLE-----------T-MFAVAQ-KDWVYIYD   78 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~-----------~-~l~~~~-~~~i~i~~   78 (315)
                      -.++.|+|.| +||.|+. ..|.|.|..+.+.++.++ |...|+.+.|.|-.           . +||++. .|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            4678899987 7888764 478999999999999988 77889999998731           1 344444 68999999


Q ss_pred             CC-CCEEEEeecC-CceEEEEEcCC---C-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEc
Q psy9936          79 NQ-GIELHCLKVL-NKVTRMEFLPY---H-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGH  151 (315)
Q Consensus        79 ~~-~~~~~~~~~~-~~v~~~~~~~~---~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~  151 (315)
                      .. +..+..+.+. .++..++|-+.   . ..|++-.....+.+|+..+|+.+...........++.+.| |.+.+..-+
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            84 3333344444 78888988764   3 5677777788999999999999888776666778889988 566666666


Q ss_pred             CCCeEEEEcCCC-------CcceeEeecccc-------------------------cEEEEEECCCCCEEEEeeCCCcEE
Q psy9936         152 RNGTVTMWSPTV-------QKPLASLLCHKA-------------------------GIQSVAVNHTGTYMATSAGDSQLR  199 (315)
Q Consensus       152 ~d~~i~i~d~~~-------~~~~~~~~~~~~-------------------------~i~~~~~sp~g~~l~~~~~d~~i~  199 (315)
                      ..|.+.+-+.-.       ++..+.-..|..                         -...++|+|.-+-++.......+.
T Consensus       176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell  255 (1062)
T KOG1912|consen  176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL  255 (1062)
T ss_pred             cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence            667666655321       111111111211                         012356788766555556677899


Q ss_pred             EEEccCCCCCeeEeccCC-CceeEEEccCC----eEEEEcCCEEEecC
Q psy9936         200 IWDVRNLEGPLNTFRTRT-PINNLAFSQRG----LLATSRGNIVEFLK  242 (315)
Q Consensus       200 iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g----~~~~~~~~~i~~~~  242 (315)
                      ++|++-. .++..+..+. .+.-+.|-|++    +|..-.+|.+.+|-
T Consensus       256 v~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  256 VFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             EEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            9999877 7888877665 35556666665    45556788777663

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.89  E-value=2.1e-07  Score=80.84  Aligned_cols=196  Identities=13%  Similarity=0.110  Sum_probs=122.4

Q ss_pred             eEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe---C--CeEEEEeCCCCE-EEEeecCCceEEEEEcCCCceE
Q psy9936          33 HVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ---K--DWVYIYDNQGIE-LHCLKVLNKVTRMEFLPYHFLL  105 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~--~~i~i~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l  105 (315)
                      .+.+-|.+ +.....+. ....+..-.|+|+++.++...   .  ..++++++.... ...+...+.-...+|+|||+.|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence            44444544 33333333 445677789999988766543   2  369999995433 3334444556678999999876


Q ss_pred             EEE-cCCCe--EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCCcceeEeecccccEEE
Q psy9936         106 ATA-SEEGY--LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQKPLASLLCHKAGIQS  179 (315)
Q Consensus       106 ~~~-~~d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~i~~  179 (315)
                      +.+ ..||.  |+++|+..+. ...+....+.-..-.|+|||+.++..+. .|  .|.++|++.... ..+....+.-..
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~  330 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN  330 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence            655 44555  7777887665 3335444444446689999998876654 34  577777776544 344333333337


Q ss_pred             EEECCCCCEEEEeeCC-Cc--EEEEEccCCCCCeeEeccCCCceeEEEccCCeEEE
Q psy9936         180 VAVNHTGTYMATSAGD-SQ--LRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLAT  232 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~  232 (315)
                      ..|+|||++++..+.. |.  |.+.|+.++ ..+..+..........|.|+|..+.
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~-~~~~~lt~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASG-GKIRILTSTYLNESPSWAPNGRMIM  385 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCC-CcEEEccccccCCCCCcCCCCceEE
Confidence            8899999999887743 43  777777766 3344444444456778888885433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.89  E-value=1.5e-06  Score=77.30  Aligned_cols=217  Identities=11%  Similarity=0.057  Sum_probs=128.9

Q ss_pred             EEEEcCCCeEEEEEccCceEEEEecC--CC------------cee-----------------EEEEe---ecCcEEEEEe
Q psy9936          25 LLLGGKRGHVAAFDWVRKTLACEMNV--ME------------EVY-----------------DIKWL---HLETMFAVAQ   70 (315)
Q Consensus        25 l~~~~~dg~i~v~~~~~~~~~~~~~~--~~------------~v~-----------------~~~~~---~~~~~l~~~~   70 (315)
                      +.+|+..|.++|+-+.+++.+..+..  ..            .+.                 .+++.   .||++|.+-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            55788889999999998887655430  00            011                 11111   1466666654


Q ss_pred             --CCeEEEEeC---CCCEEEEeecCCceEEEE-------------------EcCCCceEEEE-cCCCeEEEEEccCCeEE
Q psy9936          71 --KDWVYIYDN---QGIELHCLKVLNKVTRME-------------------FLPYHFLLATA-SEEGYLSWLDTSIGKIV  125 (315)
Q Consensus        71 --~~~i~i~~~---~~~~~~~~~~~~~v~~~~-------------------~~~~~~~l~~~-~~d~~i~~~d~~~~~~~  125 (315)
                        +..|-..++   +...+..++....+..+.                   ++|||+.+... -..+.+.+.|..+.+..
T Consensus       149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~  228 (635)
T PRK02888        149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA  228 (635)
T ss_pred             CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence              233333333   233333333222233222                   34455444322 22455777888877766


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEc----------------------------------------CCCeEEEEcCCC--
Q psy9936         126 SDFSAKKGKLSVMTQNPYNACICLGH----------------------------------------RNGTVTMWSPTV--  163 (315)
Q Consensus       126 ~~~~~~~~~v~~~~~~p~~~~l~~~~----------------------------------------~d~~i~i~d~~~--  163 (315)
                      .++.... ....+.++|+|+++++.+                                        .++.|.+.|.++  
T Consensus       229 ~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~  307 (635)
T PRK02888        229 WQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA  307 (635)
T ss_pred             EEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence            6655432 345677888888777664                                        124577778776  


Q ss_pred             --C-cceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCC-----------CeeEeccCCCceeEEEccCC
Q psy9936         164 --Q-KPLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEG-----------PLNTFRTRTPINNLAFSQRG  228 (315)
Q Consensus       164 --~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~g  228 (315)
                        + +.+..+. -......+.++|||+++++++ .++++.|+|+.+...           .+.......+....+|+++|
T Consensus       308 ~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G  386 (635)
T PRK02888        308 NAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRG  386 (635)
T ss_pred             cCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCC
Confidence              2 3344444 445668999999999887665 588999999988621           23444444466788999998


Q ss_pred             eEEEE--cCCEEEecCC
Q psy9936         229 LLATS--RGNIVEFLKP  243 (315)
Q Consensus       229 ~~~~~--~~~~i~~~~~  243 (315)
                      ...++  .|+.|..|++
T Consensus       387 ~aytslf~dsqv~kwn~  403 (635)
T PRK02888        387 NAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             CEEEeEeecceeEEEeh
Confidence            53333  4778887764

>KOG1275|consensus

Probab=98.88  E-value=8.9e-08  Score=86.52  Aligned_cols=168  Identities=14%  Similarity=0.117  Sum_probs=121.7

Q ss_pred             CCeEEEEeCCCCEEEEeecCC--ceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q psy9936          71 KDWVYIYDNQGIELHCLKVLN--KVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        71 ~~~i~i~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  148 (315)
                      ...+..+|+.+.......+.+  .|.-+.  .+++++.+|...|+|.+-|+++-+.++++..|.+.+..+  +-.|+.|+
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLi  231 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLI  231 (1118)
T ss_pred             hhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEE
Confidence            345556666554444444332  344443  457899999999999999999999999999999988755  55788999


Q ss_pred             EEcC---------CCeEEEEcCCCCcceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCC-eeEe--c-
Q psy9936         149 LGHR---------NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGP-LNTF--R-  214 (315)
Q Consensus       149 ~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~-~~~~--~-  214 (315)
                      ++|.         |..|.|||+|..+.+..+.-+.++ .-+.|.|. ...+++++..|...+-|..+...+ ....  . 
T Consensus       232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p  310 (1118)
T KOG1275|consen  232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP  310 (1118)
T ss_pred             EeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc
Confidence            8864         457899999988877766655444 55788887 457889999999999995443233 2222  2 


Q ss_pred             cCCCceeEEEccCCeEEEE--cCCEEEecCC
Q psy9936         215 TRTPINNLAFSQRGLLATS--RGNIVEFLKP  243 (315)
Q Consensus       215 ~~~~v~~~~~s~~g~~~~~--~~~~i~~~~~  243 (315)
                      ....+..+.+|++|.+++-  .+|.|..|..
T Consensus       311 ~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  311 NGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            2235899999999975554  4788998866

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=9.2e-09  Score=57.63  Aligned_cols=39  Identities=23%  Similarity=0.568  Sum_probs=36.6

Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936         122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus       122 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      ++++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357888999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714|consensus

Probab=98.87  E-value=1.4e-08  Score=78.82  Aligned_cols=143  Identities=16%  Similarity=0.209  Sum_probs=96.9

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceE-EEEec-CCCceeEEEEeecCcEEEEEe------CCeEEEEeCCCCE--EEEeecC
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTL-ACEMN-VMEEVYDIKWLHLETMFAVAQ------KDWVYIYDNQGIE--LHCLKVL   90 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~------~~~i~i~~~~~~~--~~~~~~~   90 (315)
                      -+..++++..||.+.+++.+.-.. ...+. ....-.+.+....+.++.++.      -+..+.|+++...  +......
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            356788899999999998765111 11111 011122333444555555443      3456667664322  2222233


Q ss_pred             CceEEEEEcCC-CceEEEEcCCCeEEEEEccCCe-EEEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeEEEEcCCC
Q psy9936          91 NKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGK-IVSDFSAKKGKLSVMTQNP-YNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        91 ~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      ..|.+++-+|. .+.+++|+.||.+.+||.+... +...+..|...+..+-|+| ++..|+++++||.+.-||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            56899999986 5678888999999999998764 4445778999999999999 566999999999999999874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.85  E-value=7.8e-06  Score=66.75  Aligned_cols=189  Identities=15%  Similarity=0.150  Sum_probs=129.7

Q ss_pred             CceeEEEEee-cCcEEEEEe--CCeEEEEeCCC-CEEEEeecC-Cc--eEEEEEcCCCceEEEEc-----CCCeEEEEEc
Q psy9936          52 EEVYDIKWLH-LETMFAVAQ--KDWVYIYDNQG-IELHCLKVL-NK--VTRMEFLPYHFLLATAS-----EEGYLSWLDT  119 (315)
Q Consensus        52 ~~v~~~~~~~-~~~~l~~~~--~~~i~i~~~~~-~~~~~~~~~-~~--v~~~~~~~~~~~l~~~~-----~d~~i~~~d~  119 (315)
                      .....++.+| ....++.+.  .....+||..+ .....+... +.  --.-.||+||.+|++.-     ..|.|-|||.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            4456788888 456666665  34788899854 444343322 11  12467999999999873     3577999999


Q ss_pred             c-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEc------------------CCCeEEEEcCCCCcceeEee----ccccc
Q psy9936         120 S-IGKIVSDFSAKKGKLSVMTQNPYNACICLGH------------------RNGTVTMWSPTVQKPLASLL----CHKAG  176 (315)
Q Consensus       120 ~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~----~~~~~  176 (315)
                      . +.+.+..+..|.-....+.+.|||+.|+++.                  .+-.+...|..+++.+.+..    -|...
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            8 5677888887777778899999998877762                  22457777888888776633    37788


Q ss_pred             EEEEEECCCCCEEEEeeCCCc-------EEEEEccCCCCCeeEeccC--------CCceeEEEccCCe-EEEEc--CCEE
Q psy9936         177 IQSVAVNHTGTYMATSAGDSQ-------LRIWDVRNLEGPLNTFRTR--------TPINNLAFSQRGL-LATSR--GNIV  238 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~--------~~v~~~~~s~~g~-~~~~~--~~~i  238 (315)
                      |..+++.++|..++..-..|.       +-+++.  + ..+..+...        .-+-+++++++|. +++++  ++.+
T Consensus       165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--G-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--C-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            999999999987766654442       333333  2 334444332        2378999999984 55554  7888


Q ss_pred             EecCC
Q psy9936         239 EFLKP  243 (315)
Q Consensus       239 ~~~~~  243 (315)
                      .+|+.
T Consensus       242 ~~~d~  246 (305)
T PF07433_consen  242 AVWDA  246 (305)
T ss_pred             EEEEC
Confidence            89965

>KOG2066|consensus

Probab=98.84  E-value=1.2e-07  Score=84.66  Aligned_cols=180  Identities=13%  Similarity=0.145  Sum_probs=129.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeC-CCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-QGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-~~~~~~~~   87 (315)
                      .+.+.|++++  +++++.|+-+|.|++++....- ...+.|...      ..+|.++++++ ||.|.|..+ ++.+....
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            4566677776  5799999999999999965443 333444443      45799999887 889999887 56666667


Q ss_pred             ecCCceEEEEEcCC-----CceEEEEcCCCeEEEEEccC-Ce-EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          88 KVLNKVTRMEFLPY-----HFLLATASEEGYLSWLDTSI-GK-IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        88 ~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~-~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      ....++.+++++|+     .+.+++|+.-| +.++.-+- |. ....+....++|.++.|.  |+++|-++.+| |++||
T Consensus       110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd  185 (846)
T KOG2066|consen  110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD  185 (846)
T ss_pred             ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence            77889999999998     46899999888 77765321 11 111345567899999995  78999998776 99999


Q ss_pred             CCCCcceeEeecccc------cEEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         161 PTVQKPLASLLCHKA------GIQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~------~i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      +.+.+.+..++....      -...+.|.++.+ |+.|=.| +|+|..++
T Consensus       186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             ccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence            998887776653322      234677877654 5555444 68888887

>KOG4714|consensus

Probab=98.83  E-value=2.7e-08  Score=77.32  Aligned_cols=140  Identities=14%  Similarity=0.185  Sum_probs=88.4

Q ss_pred             cEEEEEe-CCeEEEEeCCCCEEEEeecCC-----ceEEEEEcCCCceEEEEc-----CCCeEEEEEccCCeEEEEeccCC
Q psy9936          64 TMFAVAQ-KDWVYIYDNQGIELHCLKVLN-----KVTRMEFLPYHFLLATAS-----EEGYLSWLDTSIGKIVSDFSAKK  132 (315)
Q Consensus        64 ~~l~~~~-~~~i~i~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~  132 (315)
                      .-++++. ||.+.+++.+.  ...+.+..     .-.+.+....++.+.++.     .-+..+.|+++..+....-....
T Consensus       102 t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             CceEecCCCceEEEEechH--HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            3455554 88888888643  11122111     111222222333333321     12245566665333222211122


Q ss_pred             CCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCCc-ceeEeecccccEEEEEECCC-CCEEEEeeCCCcEEEEEccC
Q psy9936         133 GKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQK-PLASLLCHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       133 ~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~  205 (315)
                      ..|.+++-+|..+ .+++|+.||.+.+||.++.. +...+..|..+++.+-|+|. +..|++++.||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3488899999655 67788899999999999863 44556789999999999996 67999999999999999875

>KOG4190|consensus

Probab=98.81  E-value=1.6e-08  Score=86.60  Aligned_cols=162  Identities=19%  Similarity=0.233  Sum_probs=115.0

Q ss_pred             CCCceeEEEEeecCcEEEE-EeCCeEEEEeCC--CCEE-------EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEc
Q psy9936          50 VMEEVYDIKWLHLETMFAV-AQKDWVYIYDNQ--GIEL-------HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDT  119 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~-~~~~~i~i~~~~--~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  119 (315)
                      |.+.|..+.-..+.+-+++ +.|.+|++|.+.  +..+       ....|..+|.++.|..+-++++++  ||.|++||.
T Consensus       734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP  811 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP  811 (1034)
T ss_pred             cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence            5666776655455444444 459999999983  3222       123467899999999887777654  788999998


Q ss_pred             cCCeEEEEecc--CCCCeEEEEEcC--CCCEEEE-EcCCCeEEEEcCCCCcceeEee-----cccccEEEEEECCCCCEE
Q psy9936         120 SIGKIVSDFSA--KKGKLSVMTQNP--YNACICL-GHRNGTVTMWSPTVQKPLASLL-----CHKAGIQSVAVNHTGTYM  189 (315)
Q Consensus       120 ~~~~~~~~~~~--~~~~v~~~~~~p--~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~sp~g~~l  189 (315)
                      --++++..+..  ..+.+..+..-|  +..++.. ++...+|+++|.+.+.....++     +..+-+.+++..|.|+++
T Consensus       812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l  891 (1034)
T KOG4190|consen  812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL  891 (1034)
T ss_pred             cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence            87776654321  122333344334  3444444 4778999999999988777765     334567899999999999


Q ss_pred             EEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         190 ATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       190 ~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      +.+-.+|+|.+.|.+++ +.+..+.
T Consensus       892 Aa~LSnGci~~LDaR~G-~vINswr  915 (1034)
T KOG4190|consen  892 AAALSNGCIAILDARNG-KVINSWR  915 (1034)
T ss_pred             hHHhcCCcEEEEecCCC-ceeccCC
Confidence            99999999999999998 7666554

>KOG0882|consensus

Probab=98.79  E-value=1.5e-07  Score=78.71  Aligned_cols=205  Identities=10%  Similarity=0.096  Sum_probs=142.9

Q ss_pred             CcEEEEEEcCCCCEEEEEcC-CCeEEEEEccCceEEEEecCCCceeEEEEeec-C---cEEEEEe--CCeEEEEeCCC--
Q psy9936          11 FGIYRMNYTKNGRHLLLGGK-RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL-E---TMFAVAQ--KDWVYIYDNQG--   81 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~-~---~~l~~~~--~~~i~i~~~~~--   81 (315)
                      ..|.+++.+-+|.++.+.+. |..++++|+++-..+.-+........+.|... |   ..++++.  ++.+.++|-.+  
T Consensus        54 ~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~  133 (558)
T KOG0882|consen   54 GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF  133 (558)
T ss_pred             HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc
Confidence            34567778889988888776 99999999987765544442222223333322 2   2455553  68999999732  


Q ss_pred             CEEEE--eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC------CeEEEE---------eccCCCCeEEEEEcCCC
Q psy9936          82 IELHC--LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI------GKIVSD---------FSAKKGKLSVMTQNPYN  144 (315)
Q Consensus        82 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~---------~~~~~~~v~~~~~~p~~  144 (315)
                      .+...  -.|..+|.++.+++.+..+++....|.|..|....      .+....         +........++.|+|+|
T Consensus       134 ~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g  213 (558)
T KOG0882|consen  134 CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG  213 (558)
T ss_pred             CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence            22222  23669999999999999999999999999998762      111111         11223457889999999


Q ss_pred             CEEEEEcCCCeEEEEcCCCCcceeEeec--------------------------------cc-ccEEEEEECCCCCEEEE
Q psy9936         145 ACICLGHRNGTVTMWSPTVQKPLASLLC--------------------------------HK-AGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       145 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------------~~-~~i~~~~~sp~g~~l~~  191 (315)
                      ..+.+-+.|..|++++..+++.++.+..                                |. ..-+.+.|...|++|+.
T Consensus       214 ~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly  293 (558)
T KOG0882|consen  214 AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY  293 (558)
T ss_pred             CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe
Confidence            9999999999999999998875444321                                11 12356778888999999


Q ss_pred             eeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         192 SAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                      |+.=| |++.++.++ .+.+.+.-..
T Consensus       294 ~t~~g-ikvin~~tn-~v~ri~gk~e  317 (558)
T KOG0882|consen  294 GTILG-IKVINLDTN-TVVRILGKDE  317 (558)
T ss_pred             eccee-EEEEEeecC-eEEEEeccch
Confidence            88776 999999998 7777665443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.79  E-value=2.1e-06  Score=75.07  Aligned_cols=217  Identities=11%  Similarity=0.101  Sum_probs=130.5

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEeecCCceEEE--EE
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCLKVLNKVTRM--EF   98 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~~~~~~v~~~--~~   98 (315)
                      +..++.++.+|.++.+|.++|+.+........+.+--...++.+++...++.++-+|. +++.+.......+...+  .-
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence            4466677888999999999999887776544443322223566666666889999998 45555444332111100  01


Q ss_pred             cC--CCceEEEEcCCCeEEEEEccCCeEEEEeccCCC-------CeEEEEEcC--CCCEEEEEcCCCeEEEEcCCCCcce
Q psy9936          99 LP--YHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG-------KLSVMTQNP--YNACICLGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus        99 ~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------~v~~~~~~p--~~~~l~~~~~d~~i~i~d~~~~~~~  167 (315)
                      +|  .+..++.++.+|.+..+|..+|+.+........       ....+..+|  .+..++.++.++.+..+|+.+++.+
T Consensus       200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~  279 (394)
T PRK11138        200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV  279 (394)
T ss_pred             CCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence            22  133567778899999999999876654431110       011111223  2456667778999999999999876


Q ss_pred             eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc--CCCceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         168 ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT--RTPINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       168 ~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      .....  .....+.  .++..++.++.+|.+..+|..++ +.+.....  +....+.....+-.++.+.+|.+...++
T Consensus       280 W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        280 WKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             EeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEEC
Confidence            55431  1111222  24667888889999999999988 55443321  1122333333222466667787776654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.79  E-value=1.3e-06  Score=75.88  Aligned_cols=114  Identities=16%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             CCceEEEEEcCC-CceEEEE----cCCCe----EEEEEccCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          90 LNKVTRMEFLPY-HFLLATA----SEEGY----LSWLDTSIGKIV----SDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        90 ~~~v~~~~~~~~-~~~l~~~----~~d~~----i~~~d~~~~~~~----~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      .....++.|+.. +..+.+.    +.+|.    -.+|++..++..    ..+ .....+.+++++|+...++.|+.||+|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeE
Confidence            345567777763 4445443    33443    345776544321    122 356779999999999999999999999


Q ss_pred             EEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      .+||...+.  ..+....-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       284 iLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            999987663  333334566789999999999999999999999998743

>KOG2114|consensus

Probab=98.76  E-value=6.9e-06  Score=74.30  Aligned_cols=195  Identities=11%  Similarity=0.108  Sum_probs=127.5

Q ss_pred             EEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCc-eeEEEEeecCcEEEEEe-C-C----eEEEEeCC---CCE-E
Q psy9936          17 NYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEE-VYDIKWLHLETMFAVAQ-K-D----WVYIYDNQ---GIE-L   84 (315)
Q Consensus        17 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~~~~-~-~----~i~i~~~~---~~~-~   84 (315)
                      +|++.+..++.|+.+|.|.+++- +-+....+. +... |..+....+..+|++-. | +    .+++|+++   +.. .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            47888999999999999988873 344434444 4444 33333333334555433 3 2    69999983   211 1


Q ss_pred             ------EEee-----cCCceEEEEEcCCCceEEEEcCCCeEEEEEcc----CCeEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          85 ------HCLK-----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTS----IGKIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        85 ------~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                            ...+     ...++.+++.+.+-+.+|+|-.+|.|..+.-+    .|....-......+|+++++..++..++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence                  1122     13678899999999999999999999998532    12222222234568999999999886333


Q ss_pred             EcCCCeEEEEcCCCCcc-eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         150 GHRNGTVTMWSPTVQKP-LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      +..-..|.+|.+....+ ...+..|..+++|.++++...-+++++.. .+.+|+.... .+-..+.
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~-~~cfaf~  252 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGR-GPCFAFE  252 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCc-ceeeeec
Confidence            33446799999884443 44466788899999998876545454433 5999998876 5555555

>KOG3617|consensus

Probab=98.75  E-value=6.3e-07  Score=80.70  Aligned_cols=107  Identities=10%  Similarity=0.087  Sum_probs=87.9

Q ss_pred             EEEEEEcCCCCEEEEEc----CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          13 IYRMNYTKNGRHLLLGG----KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~----~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      .+-..|+|...++|+++    ..|.|.||- ++|++......+-.+.+++|+|..-.|+.+. -|.+.+|.....+.++.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            35567999999998775    358899985 6777665555555577899999998888886 68999999977766664


Q ss_pred             --ecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc
Q psy9936          88 --KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS  120 (315)
Q Consensus        88 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  120 (315)
                        .|..++..+.|||+|..++++..-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence              577899999999999999999999999999876

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.73  E-value=5.5e-06  Score=72.40  Aligned_cols=213  Identities=12%  Similarity=0.065  Sum_probs=130.2

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCCCceeEE--EEee---cCcEEEEEeCCeEEEEeCC-CCEEEEeecCC-----
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDI--KWLH---LETMFAVAQKDWVYIYDNQ-GIELHCLKVLN-----   91 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~--~~~~---~~~~l~~~~~~~i~i~~~~-~~~~~~~~~~~-----   91 (315)
                      ..+++++.++.+.-+|..+|+.+..+....+...+  .-+|   ++..++...++.+..+|.. +..+.......     
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~  240 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT  240 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence            45666778899999999999988777633221100  0111   3555555668888888874 33332221110     


Q ss_pred             ---ceEEEEEcC--CCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          92 ---KVTRMEFLP--YHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        92 ---~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                         ....+.-+|  .+..++.++.+|.+..+|..+|+.+-.....  ....+.  ..+..++.++.+|.+..+|..+++.
T Consensus       241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EECCEEEEEcCCCeEEEEECCCCcE
Confidence               011111222  2456777778999999999999877654321  111122  2456777888899999999999976


Q ss_pred             eeEeecccc-cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCc-eeEEEccCCeEEEEcCCEEEecC
Q psy9936         167 LASLLCHKA-GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPI-NNLAFSQRGLLATSRGNIVEFLK  242 (315)
Q Consensus       167 ~~~~~~~~~-~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v-~~~~~s~~g~~~~~~~~~i~~~~  242 (315)
                      +........ ...+...  .+.+|+.++.+|.+.+.|..++ +.+...... ..+ .+..+..+.+++.+.+|.+..++
T Consensus       317 ~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        317 LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence            654331111 1122222  2557888999999999999998 777776543 233 23344434467778888887654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.72  E-value=1.5e-05  Score=65.90  Aligned_cols=200  Identities=14%  Similarity=0.095  Sum_probs=127.9

Q ss_pred             EEEEcCCCCEEEEE--cCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeC--CCCEEEEee--
Q psy9936          15 RMNYTKNGRHLLLG--GKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN--QGIELHCLK--   88 (315)
Q Consensus        15 ~~~~s~~~~~l~~~--~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~--~~~~~~~~~--   88 (315)
                      .+++|.||+++++.  +..-.|.|.|+..++.+..+..+++..-.-+ ++..+...|.||.+.-..+  +|++.....  
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~  177 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV  177 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccc
Confidence            45788999987764  4456899999999999988887775544433 3455777888998877776  455542211  


Q ss_pred             -c--CCce-EEEEEcCCCceEEEEcCCCeEEEEEccCCeEE--EEecc----------CCCCeEEEEEcCCCCEEEEEc-
Q psy9936          89 -V--LNKV-TRMEFLPYHFLLATASEEGYLSWLDTSIGKIV--SDFSA----------KKGKLSVMTQNPYNACICLGH-  151 (315)
Q Consensus        89 -~--~~~v-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~----------~~~~v~~~~~~p~~~~l~~~~-  151 (315)
                       +  ..++ ..-++...+..++..+.+|.|+-.|+......  ..+..          -.+.-.-+++++..+.|++-- 
T Consensus       178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh  257 (342)
T PF06433_consen  178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH  257 (342)
T ss_dssp             SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred             cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence             1  1222 24455555666767888999999998754322  22211          012234478887666555431 


Q ss_pred             --CC-------CeEEEEcCCCCcceeEeecccccEEEEEECCCCC-EEEEe-eCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         152 --RN-------GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT-YMATS-AGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       152 --~d-------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                        .+       ..|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++. ..++.+.+||..++ +.+..+..-.
T Consensus       258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k~~~~~~~lG  332 (342)
T PF06433_consen  258 QGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG-KLVRSIEQLG  332 (342)
T ss_dssp             E--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---S
T ss_pred             CCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-cEEeehhccC
Confidence              11       2689999999999998873 45677999998866 55544 46789999999999 8888876543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1912|consensus

Probab=98.72  E-value=4.3e-07  Score=80.92  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=79.4

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeC----------CeEEEEeCCCCEEEEee----
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQK----------DWVYIYDNQGIELHCLK----   88 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----------~~i~i~~~~~~~~~~~~----   88 (315)
                      ++|.|+..|+|.++|+.++.....+. |...|.++.|..+..++..+..          +.+.+-|+.++.-..+.    
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~  518 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK  518 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence            67889999999999999999888887 8899999999988887776531          35677777543333322    


Q ss_pred             -cCCceEEEEEcCCCceEEEEcCCCeEEEEEccC
Q psy9936          89 -VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        89 -~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  121 (315)
                       ...+|..+..+..+.+++..-.+..+.+||+++
T Consensus       519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt  552 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT  552 (1062)
T ss_pred             CCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence             337899999999999999999999999999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.71  E-value=8.1e-06  Score=71.41  Aligned_cols=164  Identities=8%  Similarity=0.038  Sum_probs=94.8

Q ss_pred             CceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC
Q psy9936          52 EEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK  131 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  131 (315)
                      -.+..+.++|+|++++++++|...++......-..   .+......|.+.+ .+|+-...++|.++.--+......+...
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~---~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~  108 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA---FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP  108 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE---EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc---cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC
Confidence            34788999999999999999999999854332222   2445668898855 4666666888999732222222233322


Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC-----
Q psy9936         132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL-----  206 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~-----  206 (315)
                       ..+..+-.   |.+|...+.+ .|.+||..+++.+..+..  .+|..+.|+++|.++|..+.+ .+.|++....     
T Consensus       109 -~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~  180 (443)
T PF04053_consen  109 -FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAI  180 (443)
T ss_dssp             -S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHB
T ss_pred             -cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccc
Confidence             22444432   8877777654 899999999999998873  248999999999999998866 5777664321     


Q ss_pred             -----CCCeeEecc-CCCceeEEEccC
Q psy9936         207 -----EGPLNTFRT-RTPINNLAFSQR  227 (315)
Q Consensus       207 -----~~~~~~~~~-~~~v~~~~~s~~  227 (315)
                           +..+..+.. ...|.+.+|..|
T Consensus       181 ~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  181 PEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             TTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             cccCchhceEEEEEecceeEEEEEEcC
Confidence                 013344433 456888888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.69  E-value=8.3e-05  Score=59.82  Aligned_cols=189  Identities=10%  Similarity=0.088  Sum_probs=112.4

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC--CCE
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ--GIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~--~~~   83 (315)
                      ...+..++|+|+.. ++++....+.|..++. +|+.+..+.  ..+..-.+++..++.++++.. ++.+.++++.  +..
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            55699999999766 5566667788888886 477777766  335678889988887777664 7888888872  211


Q ss_pred             -----EEEee------cCCceEEEEEcCCCceEEEEcCCCeEEEEEccC---CeEEEE--e------ccCCCCeEEEEEc
Q psy9936          84 -----LHCLK------VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI---GKIVSD--F------SAKKGKLSVMTQN  141 (315)
Q Consensus        84 -----~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~--~------~~~~~~v~~~~~~  141 (315)
                           ...+.      +...+..++|+|.++.|+.+-+.....+|.+..   ...+..  .      ......+.+++++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence                 11111      225689999999988777777766667776653   211111  1      1133457889999


Q ss_pred             CC-CCEEEEEcCCCeEEEEcCCCCcceeEeeccc---------ccEEEEEECCCCCEEEEeeCCCcEEEE
Q psy9936         142 PY-NACICLGHRNGTVTMWSPTVQKPLASLLCHK---------AGIQSVAVNHTGTYMATSAGDSQLRIW  201 (315)
Q Consensus       142 p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~sp~g~~l~~~~~d~~i~iw  201 (315)
                      |. |++++....+..|..+| .+|+++..+.-..         ...-.|+|.++|++.++ +..+..++|
T Consensus       180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            95 45777778888999999 5577666554211         25679999999975554 455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.69  E-value=5.6e-06  Score=72.38  Aligned_cols=215  Identities=12%  Similarity=0.145  Sum_probs=117.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEE-eCCCCEEEEee
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIY-DNQGIELHCLK   88 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~-~~~~~~~~~~~   88 (315)
                      ...+..+.++|+|++++++ .+|...|+.....+...    .+......|.+.+++.+.-..+.|.++ +.+......+.
T Consensus        32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT----
T ss_pred             CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc----cCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEc
Confidence            5567899999999999985 57788888854443322    244567889997776666667889996 44332222233


Q ss_pred             cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC----
Q psy9936          89 VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ----  164 (315)
Q Consensus        89 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~----  164 (315)
                      ....+..+-.   |.+|...+.+ .|.+||..+++.++.+...  +|..+.|+++|++++..+.+ .+.+++.+..    
T Consensus       107 ~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~  179 (443)
T PF04053_consen  107 LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA  179 (443)
T ss_dssp             -SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred             CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence            3333444432   7777776654 8999999999999998744  38899999999999988765 5666654322    


Q ss_pred             -------cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEcc--CCeEEEEcC
Q psy9936         165 -------KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQ--RGLLATSRG  235 (315)
Q Consensus       165 -------~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~~~~~~  235 (315)
                             ..+..+..-...|.+..|..+  .++..+.. .++.  +-++ ..........++.=+...|  +..++.-.+
T Consensus       180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G-e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~  253 (443)
T PF04053_consen  180 IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG-ETGIIAHLDKPLYLLGYLPKENRLYLIDRD  253 (443)
T ss_dssp             BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT-EEEEEEE-SS--EEEEEETTTTEEEEE-TT
T ss_pred             ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC-CcceEEEcCCceEEEEEEccCCEEEEEECC
Confidence                   133333322567888899766  44444444 6665  4444 2222222344666667777  335666677


Q ss_pred             CEEEecC
Q psy9936         236 NIVEFLK  242 (315)
Q Consensus       236 ~~i~~~~  242 (315)
                      +.+..+.
T Consensus       254 ~~v~~~~  260 (443)
T PF04053_consen  254 GNVISYE  260 (443)
T ss_dssp             --EEEEE
T ss_pred             CCEEEEE
Confidence            7776544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.69  E-value=1.7e-06  Score=75.24  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=82.5

Q ss_pred             EecCCCceeEEEEeec-C-cEEEEEe----CC----eEEEEeCCCCEEE-----EeecCCceEEEEEcCCCceEEEEcCC
Q psy9936          47 EMNVMEEVYDIKWLHL-E-TMFAVAQ----KD----WVYIYDNQGIELH-----CLKVLNKVTRMEFLPYHFLLATASEE  111 (315)
Q Consensus        47 ~~~~~~~v~~~~~~~~-~-~~l~~~~----~~----~i~i~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d  111 (315)
                      .+.......++.|+.. . .+..+..    +|    .-.+|++....++     .++....+.+++++|+...++.|+.|
T Consensus       201 yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D  280 (545)
T PF11768_consen  201 YIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED  280 (545)
T ss_pred             EEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC
Confidence            3344455677788763 2 3333321    33    3456666443333     34566899999999999999999999


Q ss_pred             CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936         112 GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus       112 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      |+|.+||...+....  ....-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus       281 gSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  281 GSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            999999987663332  23345578899999999999999999999999763

>KOG1275|consensus

Probab=98.68  E-value=1.1e-06  Score=79.73  Aligned_cols=178  Identities=13%  Similarity=0.223  Sum_probs=127.6

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCC-ceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEEee-cCCceEEEE
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHCLK-VLNKVTRME   97 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~~~-~~~~v~~~~   97 (315)
                      +..++.|+-...+..+|+.+.+..+...... .|.-++  .+++++.+|. .|+|.+-|.+. +.++.+. |.+.+..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            4456666666678889998888777766333 454444  4677777775 89999999954 4455554 556676654


Q ss_pred             EcCCCceEEEEcC---------CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEcCCCeEEEEc---CCCC
Q psy9936          98 FLPYHFLLATASE---------EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN-ACICLGHRNGTVTMWS---PTVQ  164 (315)
Q Consensus        98 ~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~i~d---~~~~  164 (315)
                      .  .|+.|++++.         |.-|+|||++..+.+..+.-+.++ .-+.|+|.- ..+++++..|...+-|   +.+.
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence            4  5888888875         445899999988777766655554 457788854 4788888899999999   3332


Q ss_pred             c-ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         165 K-PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       165 ~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      . -+..+....+.+..+.+|++|..+|.|..+|.|.+|.-+
T Consensus       302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            1 122233334568999999999999999999999999843

>KOG1920|consensus

Probab=98.67  E-value=2.2e-05  Score=73.69  Aligned_cols=191  Identities=13%  Similarity=0.198  Sum_probs=123.6

Q ss_pred             CceeEEEEeecCcEEEEE-eCCeEEEEeCCCCEEEEeecC-CceEEEEEcCCCceEEEEcCCCeEEEEEc----cC----
Q psy9936          52 EEVYDIKWLHLETMFAVA-QKDWVYIYDNQGIELHCLKVL-NKVTRMEFLPYHFLLATASEEGYLSWLDT----SI----  121 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~----~~----  121 (315)
                      ..|.++.|..+..-++.+ ..|.|.+-|.+...+...+.. ..|.+++|+||..+++..+..+++.+-+-    -.    
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            478999998876655555 588888889877777666544 78999999999999998888777766432    11    


Q ss_pred             ---------------CeEEEEeccCC---------------------CCeEEEEEcCCCCEEEEE-----cCCCeEEEEc
Q psy9936         122 ---------------GKIVSDFSAKK---------------------GKLSVMTQNPYNACICLG-----HRNGTVTMWS  160 (315)
Q Consensus       122 ---------------~~~~~~~~~~~---------------------~~v~~~~~~p~~~~l~~~-----~~d~~i~i~d  160 (315)
                                     |+....|.+..                     +.=+.+.|.-||.++|+.     ..-..|++||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                           11111222111                     112348999999999883     2237999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEee---CCCcEEEEEccCCC--CCeeEeccCC-CceeEEEccCCeEEEE-
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA---GDSQLRIWDVRNLE--GPLNTFRTRT-PINNLAFSQRGLLATS-  233 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~d~~i~iwd~~~~~--~~~~~~~~~~-~v~~~~~s~~g~~~~~-  233 (315)
                      .+ +..-..-....+--.+++|-|.|.++++-.   .|+.|.+|.-+...  ...-.++... ++..++|+.++.+++. 
T Consensus       229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~  307 (1265)
T KOG1920|consen  229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV  307 (1265)
T ss_pred             cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeee
Confidence            87 432222222233345899999999998864   45579999865431  1111122233 3899999999954443 


Q ss_pred             ---c-CCEEEecCC
Q psy9936         234 ---R-GNIVEFLKP  243 (315)
Q Consensus       234 ---~-~~~i~~~~~  243 (315)
                         . ...|+.|..
T Consensus       308 ~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  308 TSNLENSLVQLWTT  321 (1265)
T ss_pred             ecccccceEEEEEe
Confidence               2 334776654

>KOG1645|consensus

Probab=98.64  E-value=2.1e-06  Score=71.02  Aligned_cols=230  Identities=15%  Similarity=0.156  Sum_probs=135.6

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCc-EEEEEe-CCeEEEEeCCCCE--E
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLET-MFAVAQ-KDWVYIYDNQGIE--L   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~--~   84 (315)
                      ...|..++|||..+ ++..++.+..|.|.|+++......+.....+++++|.-|.. ++.+|. +|.|.+||+...+  +
T Consensus       193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             chhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence            45688999999877 77788889999999999999888888778999999998754 444443 7999999984221  1


Q ss_pred             EEee---cCCceEEEE------EcCCCceEEEEcCCCeEEEEEcc--CCeEEEEec-cCCCCeEEEEEcCCCCEEEEEcC
Q psy9936          85 HCLK---VLNKVTRME------FLPYHFLLATASEEGYLSWLDTS--IGKIVSDFS-AKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        85 ~~~~---~~~~v~~~~------~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      ..+.   ...+|..++      ..+.|.+++....+  +..|.+.  .+.....+. ...+.+.++...+..+.++....
T Consensus       273 ~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyR  350 (463)
T KOG1645|consen  273 MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYR  350 (463)
T ss_pred             hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEec
Confidence            1111   113333333      23345555555443  4455543  122222222 23455667777775554443322


Q ss_pred             CC-------eEE-EEcCCCCcceeEee-cc-cccE------EEEEECCCCCEEE-EeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         153 NG-------TVT-MWSPTVQKPLASLL-CH-KAGI------QSVAVNHTGTYMA-TSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       153 d~-------~i~-i~d~~~~~~~~~~~-~~-~~~i------~~~~~sp~g~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      ..       .+- --|-++|.++..-+ ++ .+.-      ..+.=.++.++++ ++...+.+.+||..+. ..++.+..
T Consensus       351 s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~-evvQ~l~~  429 (463)
T KOG1645|consen  351 SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF-EVVQTLAL  429 (463)
T ss_pred             CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh-heeeeccc
Confidence            20       111 12233344433222 12 1100      1111234455544 5556678999999999 99999998


Q ss_pred             CCCceeEEEccC-C--eEEEEcCCEEEecC
Q psy9936         216 RTPINNLAFSQR-G--LLATSRGNIVEFLK  242 (315)
Q Consensus       216 ~~~v~~~~~s~~-g--~~~~~~~~~i~~~~  242 (315)
                      ..+|.+++.... |  .+.+-.|..+++++
T Consensus       430 ~epv~Dicp~~~n~~syLa~LTd~~v~Iyk  459 (463)
T KOG1645|consen  430 SEPVLDICPNDTNGSSYLALLTDDRVHIYK  459 (463)
T ss_pred             CcceeecceeecCCcchhhheecceEEEEe
Confidence            888888876553 2  34444577776654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.64  E-value=6.1e-05  Score=60.58  Aligned_cols=186  Identities=12%  Similarity=0.130  Sum_probs=110.0

Q ss_pred             CCceeEEEEeecCcEEE-EEe-CCeEEEEeCCCCEEEEeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe---
Q psy9936          51 MEEVYDIKWLHLETMFA-VAQ-KDWVYIYDNQGIELHCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK---  123 (315)
Q Consensus        51 ~~~v~~~~~~~~~~~l~-~~~-~~~i~i~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---  123 (315)
                      ...+..++|.|+...|+ +.. .+.|..++.+++.+..+..  ......+++..++.++++.-.++.+.++++....   
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            34599999999855444 444 4688888988877766543  3678899998888777766668899999884321   


Q ss_pred             ---EEEEec-----cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC---CcceeEee--------cccccEEEEEECC
Q psy9936         124 ---IVSDFS-----AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV---QKPLASLL--------CHKAGIQSVAVNH  184 (315)
Q Consensus       124 ---~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~--------~~~~~i~~~~~sp  184 (315)
                         ....+.     .+...+-.++|+|.++.|+++-+..-..+|.++.   ...+....        ..-..+.+++++|
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p  180 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP  180 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence               112221     2345589999999988777777766666666553   22221111        1234578899998


Q ss_pred             C-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC----------CceeEEEccCC-eEEEEcCCEE
Q psy9936         185 T-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT----------PINNLAFSQRG-LLATSRGNIV  238 (315)
Q Consensus       185 ~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~s~~g-~~~~~~~~~i  238 (315)
                      . |.+++.+..+..+..+| ..+ +++..+....          ..-.++|+++| +|+++.-+..
T Consensus       181 ~t~~lliLS~es~~l~~~d-~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlf  244 (248)
T PF06977_consen  181 RTGHLLILSDESRLLLELD-RQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLF  244 (248)
T ss_dssp             TTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred             CCCeEEEEECCCCeEEEEC-CCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceE
Confidence            7 45666777778898999 444 6666554332          36789999999 5777765543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=6.9e-05  Score=65.03  Aligned_cols=215  Identities=15%  Similarity=0.063  Sum_probs=146.8

Q ss_pred             cEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe----CCeEEEEeCCCCE-EE
Q psy9936          12 GIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ----KDWVYIYDNQGIE-LH   85 (315)
Q Consensus        12 ~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~-~~   85 (315)
                      ....+++++.+..+ ++...+..|.+.|..+.+.............++++|+++.+.++.    ++.+.+.|..+.. ..
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            34677888888844 444456889999988887777766555778899999987776654    3678888875443 33


Q ss_pred             EeecCCceEEEEEcCCCceEEEEc-CCCeEEEEEccCCeEEE-E----eccCCCCeEEEEEcCCCCEEEEEcCC---CeE
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTSIGKIVS-D----FSAKKGKLSVMTQNPYNACICLGHRN---GTV  156 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-~----~~~~~~~v~~~~~~p~~~~l~~~~~d---~~i  156 (315)
                      ..........++++|+|..++... .++.|.++|........ .    .... .....+.++|+|..+++....   +.+
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceE
Confidence            333322338899999998666654 78899999977654442 1    2222 234668999999966655443   599


Q ss_pred             EEEcCCCCcceeEeecccc-cEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccCC----CceeEEEccCC
Q psy9936         157 TMWSPTVQKPLASLLCHKA-GIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTRT----PINNLAFSQRG  228 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~-~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~g  228 (315)
                      ...|..++.....-..-.. ....+..+|+|.++.+.. ..+.+.+.|..+. .....+....    .+..+++.+..
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeecccccccccceeccceeec
Confidence            9999998765554111112 456789999999888874 4478999999887 6666554433    25666666644

>KOG0882|consensus

Probab=98.59  E-value=6.3e-07  Score=75.05  Aligned_cols=201  Identities=12%  Similarity=0.076  Sum_probs=137.1

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce---EEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT---LACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIEL   84 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~   84 (315)
                      +.|+.+ +..-.+++.+++.||.++.|.-..-.   .+..+. |...+.+++.+-++.++++..  |..++++|++...+
T Consensus        10 d~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dm   88 (558)
T KOG0882|consen   10 DVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDM   88 (558)
T ss_pred             ceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccch
Confidence            344444 33346799999999999999754312   222233 667788888888998888854  68999999855433


Q ss_pred             E-EeecCCceEEEEE--cCCC--ceEE-EEcCCCeEEEEEccCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          85 H-CLKVLNKVTRMEF--LPYH--FLLA-TASEEGYLSWLDTSIGK--IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        85 ~-~~~~~~~v~~~~~--~~~~--~~l~-~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      . .++.......+.|  +|..  ..++ +.-.++.+.++|-....  ....-..|..+|..+.++|-+..+++....|.|
T Consensus        89 inmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmV  168 (558)
T KOG0882|consen   89 INMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMV  168 (558)
T ss_pred             hhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccccee
Confidence            2 2332222222333  3321  1333 33467889999976432  233344689999999999999999999999999


Q ss_pred             EEEcCCC------Ccce---------eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEe
Q psy9936         157 TMWSPTV------QKPL---------ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       157 ~i~d~~~------~~~~---------~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~  213 (315)
                      .-|....      .+..         ..+....+...++.|+|+|..+.+-+.|..|++++.+++ +.++.+
T Consensus       169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqei  239 (558)
T KOG0882|consen  169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEI  239 (558)
T ss_pred             EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhh
Confidence            9999772      1111         111123456789999999999999999999999999988 555444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.56  E-value=0.00015  Score=60.09  Aligned_cols=229  Identities=13%  Similarity=0.097  Sum_probs=142.0

Q ss_pred             EEEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEecCCC--c------eeEEEEeecCcEEEEEe---CC
Q psy9936          14 YRMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMNVME--E------VYDIKWLHLETMFAVAQ---KD   72 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~--~------v~~~~~~~~~~~l~~~~---~~   72 (315)
                      -.+..|||++.+++++          ..-.|.+||..+..+...+..+.  .      ...++++.|++++.+..   ..
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3467899999887643          23468999999998877655221  1      23467888898888775   46


Q ss_pred             eEEEEeCCCCEEE-EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc-CCeEEEE----eccCCCCe-EEEEEcCCCC
Q psy9936          73 WVYIYDNQGIELH-CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS-IGKIVSD----FSAKKGKL-SVMTQNPYNA  145 (315)
Q Consensus        73 ~i~i~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~----~~~~~~~v-~~~~~~p~~~  145 (315)
                      .|.|.|+..+... .+...+...-.-+.+  .-|.+-|.||++.-..+. .|+....    |.....++ ..-++...+.
T Consensus       119 SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~  196 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG  196 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred             eEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence            8999999665543 344444333222222  347788889999999887 4554432    21222222 2334445555


Q ss_pred             EEEEEcCCCeEEEEcCCCCcc--eeEeecc----------cccEEEEEECCCCCEEEEee---CCC-------cEEEEEc
Q psy9936         146 CICLGHRNGTVTMWSPTVQKP--LASLLCH----------KAGIQSVAVNHTGTYMATSA---GDS-------QLRIWDV  203 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~~--~~~~~~~----------~~~i~~~~~sp~g~~l~~~~---~d~-------~i~iwd~  203 (315)
                      .++..+.+|.|+-.|+.....  ...+...          .+.-.-+++++....|++.-   .++       .|.++|+
T Consensus       197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            566677889999988876532  1222110          12223467877665555432   122       4888899


Q ss_pred             cCCCCCeeEeccCCCceeEEEccCC--eE-EEE-cCCEEEecCCCc
Q psy9936         204 RNLEGPLNTFRTRTPINNLAFSQRG--LL-ATS-RGNIVEFLKPPE  245 (315)
Q Consensus       204 ~~~~~~~~~~~~~~~v~~~~~s~~g--~~-~~~-~~~~i~~~~~~~  245 (315)
                      .+. +.+..+....++.+|..+.+.  ++ .++ .++.+.++++..
T Consensus       277 ~t~-krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  277 KTH-KRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             TTT-EEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             CCC-eEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            998 888888887789999999988  33 334 478899988743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.54  E-value=4.8e-05  Score=64.56  Aligned_cols=204  Identities=11%  Similarity=0.085  Sum_probs=120.7

Q ss_pred             CeEEEEEccCceEEEEec--CCCceeEEEEee-------cCcEEEEEe----------C-CeEEEEeCCCC-----EEEE
Q psy9936          32 GHVAAFDWVRKTLACEMN--VMEEVYDIKWLH-------LETMFAVAQ----------K-DWVYIYDNQGI-----ELHC   86 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~-------~~~~l~~~~----------~-~~i~i~~~~~~-----~~~~   86 (315)
                      ..|++.|..+.+.+..+.  ..+.+.+++...       ...++++|.          . |.|.++++...     .+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            358888888877766655  445566655433       256777763          1 78999998552     3333


Q ss_pred             ---eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe-EEEEecc-CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          87 ---LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK-IVSDFSA-KKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        87 ---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                         ....++|++++-- ++. |+++. .+.|.+|++...+ ....-.. ....+.++...  ++++++|+....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence               2345889988766 444 44443 4789999998776 4333221 22345555543  669999988888887754


Q ss_pred             CC-CcceeEee--cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC------CC----CeeEeccCCCceeE---EEc
Q psy9936         162 TV-QKPLASLL--CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL------EG----PLNTFRTRTPINNL---AFS  225 (315)
Q Consensus       162 ~~-~~~~~~~~--~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~------~~----~~~~~~~~~~v~~~---~~s  225 (315)
                      +. +..+..+.  ....+++++.|-++++.++.+..+|.+.++.....      ..    ....+..+..|+++   ++.
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            43 22233332  23557888888877789999999999999988631      01    12333344556666   544


Q ss_pred             cC--C--------eEEEEcCCEEEe
Q psy9936         226 QR--G--------LLATSRGNIVEF  240 (315)
Q Consensus       226 ~~--g--------~~~~~~~~~i~~  240 (315)
                      |.  +        .+.++.+|.|-.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEE
Confidence            41  1        455666777653

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=0.00023  Score=61.77  Aligned_cols=216  Identities=13%  Similarity=0.104  Sum_probs=140.2

Q ss_pred             CcEEEEEEcCCCCEEEEEc-CCCeEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEe--CCeEEEEeCCCC-EEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGG-KRGHVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGI-ELH   85 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~-~~~   85 (315)
                      ..+..+.+.|++..+.... ....+.+.+............. .....+..++.+..+.+..  ++.|.+.|.... ...
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~  110 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG  110 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence            3556778888885443332 2224555555422222222222 3345677888776444443  689999996443 333


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcC---CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcC
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASE---EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVTMWSP  161 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~  161 (315)
                      ..........++++|+++.++++..   ++++.+.|..+++..........+ ..++++|+|+.++... .++.|.+.|.
T Consensus       111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            3444447788999999987777655   688999999988888775544444 8899999999666554 7889999997


Q ss_pred             CCCccee-E----eecccccEEEEEECCCCCEEEEeeCC---CcEEEEEccCCCCCeeE-eccCC-CceeEEEccCCe
Q psy9936         162 TVQKPLA-S----LLCHKAGIQSVAVNHTGTYMATSAGD---SQLRIWDVRNLEGPLNT-FRTRT-PINNLAFSQRGL  229 (315)
Q Consensus       162 ~~~~~~~-~----~~~~~~~i~~~~~sp~g~~l~~~~~d---~~i~iwd~~~~~~~~~~-~~~~~-~v~~~~~s~~g~  229 (315)
                      .+..... .    .. -......+.++|+|.++.+....   +.+...|..++ ..... ..... ....+..+|+|.
T Consensus       190 ~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~~~~v~~~p~g~  265 (381)
T COG3391         190 SGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGAPRGVAVDPAGK  265 (381)
T ss_pred             CCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCCCCceeECCCCC
Confidence            7654442 1    21 22344678999999976655443   58999998886 44433 22222 467789999994

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.51  E-value=5.6e-05  Score=64.98  Aligned_cols=218  Identities=13%  Similarity=0.110  Sum_probs=120.2

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-C-----------------CCceeEEEEeecCcEEEEEe--
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-V-----------------MEEVYDIKWLHLETMFAVAQ--   70 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~-----------------~~~v~~~~~~~~~~~l~~~~--   70 (315)
                      ..+....|||+|+.+|... ++.|++++..++...+... .                 -+.-..+-||||++.|+...  
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            4677889999999999875 5689999987775443222 1                 12345688999999888753  


Q ss_pred             CCe-----------------------------------EEEEeCCCCEEEEe--e-----cCCceEEEEEcCCCceEEEE
Q psy9936          71 KDW-----------------------------------VYIYDNQGIELHCL--K-----VLNKVTRMEFLPYHFLLATA  108 (315)
Q Consensus        71 ~~~-----------------------------------i~i~~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~l~~~  108 (315)
                      +..                                   +.++++.+.....+  .     ....+..+.|.+++..|+..
T Consensus       122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~  201 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ  201 (353)
T ss_dssp             -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred             CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence            222                                   22233322111111  1     11356778899988744433


Q ss_pred             cC--C---CeEEEEEccCCeEEEEecc-CCCC---eEEEEEc-CCCC-EEEEEcCCC--eEEEEcCCCCcceeEeecccc
Q psy9936         109 SE--E---GYLSWLDTSIGKIVSDFSA-KKGK---LSVMTQN-PYNA-CICLGHRNG--TVTMWSPTVQKPLASLLCHKA  175 (315)
Q Consensus       109 ~~--d---~~i~~~d~~~~~~~~~~~~-~~~~---v~~~~~~-p~~~-~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~  175 (315)
                      -.  +   ..+.++|..++........ ..+.   .....|. +++. ++.....+|  .|.+++...+. ...+....-
T Consensus       202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~  280 (353)
T PF00930_consen  202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW  280 (353)
T ss_dssp             EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS
T ss_pred             EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce
Confidence            22  2   2366778876643322221 2222   2244554 6665 444444666  56666776654 345554455


Q ss_pred             cEEE-EEECCCCCEEE-EeeCC--CcEEEE--EccCCCCCeeEeccCCCce-eEEEccCCeEE
Q psy9936         176 GIQS-VAVNHTGTYMA-TSAGD--SQLRIW--DVRNLEGPLNTFRTRTPIN-NLAFSQRGLLA  231 (315)
Q Consensus       176 ~i~~-~~~sp~g~~l~-~~~~d--~~i~iw--d~~~~~~~~~~~~~~~~v~-~~~~s~~g~~~  231 (315)
                      .|.. +.|+++++.|+ ++..+  ..-.||  ++..+ ..+..+....... .+.|||+|.++
T Consensus       281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-~~~~~LT~~~~~~~~~~~Spdg~y~  342 (353)
T PF00930_consen  281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-GEPKCLTCEDGDHYSASFSPDGKYY  342 (353)
T ss_dssp             -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-TEEEESSTTSSTTEEEEE-TTSSEE
T ss_pred             eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-CCeEeccCCCCCceEEEECCCCCEE
Confidence            6644 67888877554 44432  234444  45512 4555565555555 99999999543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617|consensus

Probab=98.51  E-value=6.1e-07  Score=80.78  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=90.0

Q ss_pred             eEEEEeecCcEEEEEe-----CCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec
Q psy9936          55 YDIKWLHLETMFAVAQ-----KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS  129 (315)
Q Consensus        55 ~~~~~~~~~~~l~~~~-----~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  129 (315)
                      +-.+|+|...++++++     .|.|.||--+|.+..-+..+-.+.+++|+|..-.|+.|-.-|.+.+|...+.+.-....
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            4457999999998875     57899987766654444445566789999999899999999999999988766655566


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936         130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus       130 ~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      .|+.++..+.|||+|..++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            799999999999999999999999999999876

>KOG1008|consensus

Probab=98.46  E-value=4.7e-08  Score=85.12  Aligned_cols=193  Identities=14%  Similarity=0.170  Sum_probs=127.6

Q ss_pred             CcEEEEEEcCCC--CEEEEEcCCCeEEEEEccCceE---EEEecCCCceeEEEEee-cCcEEEEEe-----CCeEEEEeC
Q psy9936          11 FGIYRMNYTKNG--RHLLLGGKRGHVAAFDWVRKTL---ACEMNVMEEVYDIKWLH-LETMFAVAQ-----KDWVYIYDN   79 (315)
Q Consensus        11 ~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~~~~---~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~~~i~i~~~   79 (315)
                      ..+.|++++-+.  ..+++|..+|.|.+-......-   ..+-.+...+++++|++ |...||.|-     |..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            345677665433  4778899999998887653322   22223556789999998 677888874     457999998


Q ss_pred             CCCE---E--EEee--cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEc
Q psy9936          80 QGIE---L--HCLK--VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGH  151 (315)
Q Consensus        80 ~~~~---~--~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~  151 (315)
                      ....   .  ..+.  ......+++|..+.+++.+|.....++++|++... ..........+..+...| .++++++-.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc
Confidence            5431   1  1111  22456688899888999999999999999998321 111112233466678888 777887665


Q ss_pred             CCCeEEEEc-CCC-CcceeEeeccc----ccEEEEEECCCCC-EEEEeeC-CCcEEEEEccC
Q psy9936         152 RNGTVTMWS-PTV-QKPLASLLCHK----AGIQSVAVNHTGT-YMATSAG-DSQLRIWDVRN  205 (315)
Q Consensus       152 ~d~~i~i~d-~~~-~~~~~~~~~~~----~~i~~~~~sp~g~-~l~~~~~-d~~i~iwd~~~  205 (315)
                       ||.|.+|| .++ ..++..+...+    ..+..++|+|... .+++.+. .++|+++|+..
T Consensus       216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence             99999999 443 23444433222    3488999999743 4555554 46799999863

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.44  E-value=0.00027  Score=58.91  Aligned_cols=213  Identities=12%  Similarity=0.035  Sum_probs=131.0

Q ss_pred             EEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEE-EEee------
Q psy9936          17 NYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIEL-HCLK------   88 (315)
Q Consensus        17 ~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~-~~~~------   88 (315)
                      .|.++...| .+--..+.|.-|+..+++. ..+...+.+.++.....+..|+++.. .+.+++.+.... ..+.      
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~-g~~~~~~~~~~~~t~~~~~~~~~  108 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH-GVRLLDPDTGGKITLLAEPEDGL  108 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc-ccEEEeccCCceeEEeccccCCC
Confidence            466766644 4445567888888776643 34444555555555444444444433 344555432222 2221      


Q ss_pred             cCCceEEEEEcCCCceEEEEcC-----------CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CCeE
Q psy9936          89 VLNKVTRMEFLPYHFLLATASE-----------EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NGTV  156 (315)
Q Consensus        89 ~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i  156 (315)
                      .....+.....|+|.+.+....           -|.++.+|. .+..+..+..+-...+.++||||++.|+.+.. .+.|
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence            1145677888999876655433           133555554 46666666665666788999999987777654 5788


Q ss_pred             EEEcCCC--C----cc-eeEeecccccEEEEEECCCCCEEEEeeCCC-cEEEEEccCCCCCeeEeccC-CCceeEEEccC
Q psy9936         157 TMWSPTV--Q----KP-LASLLCHKAGIQSVAVNHTGTYMATSAGDS-QLRIWDVRNLEGPLNTFRTR-TPINNLAFSQR  227 (315)
Q Consensus       157 ~i~d~~~--~----~~-~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~  227 (315)
                      .-|++..  +    +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. + +++..+..+ ..+++++|--.
T Consensus       188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~  265 (307)
T COG3386         188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGP  265 (307)
T ss_pred             EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCC
Confidence            8887752  1    11 112222345566778888888776555554 89999998 6 888888887 56899999763


Q ss_pred             -C--eEEEEc
Q psy9936         228 -G--LLATSR  234 (315)
Q Consensus       228 -g--~~~~~~  234 (315)
                       .  +++++.
T Consensus       266 ~~~~L~iTs~  275 (307)
T COG3386         266 DLNTLYITSA  275 (307)
T ss_pred             CcCEEEEEec
Confidence             2  455554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.41  E-value=0.00026  Score=60.06  Aligned_cols=192  Identities=14%  Similarity=0.134  Sum_probs=116.4

Q ss_pred             EEeeCCCcEEEEEEcC---C----CCEEEEEcC---------C-CeEEEEEccCc-----eE--EEEecCCCceeEEEEe
Q psy9936           5 FDLDLQFGIYRMNYTK---N----GRHLLLGGK---------R-GHVAAFDWVRK-----TL--ACEMNVMEEVYDIKWL   60 (315)
Q Consensus         5 ~~~~~~~~v~~~~~s~---~----~~~l~~~~~---------d-g~i~v~~~~~~-----~~--~~~~~~~~~v~~~~~~   60 (315)
                      +++.....+.+++.-.   +    ..+|++|+.         . |.|.++++...     ++  +......++|++++-.
T Consensus        18 ~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~   97 (321)
T PF03178_consen   18 FELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF   97 (321)
T ss_dssp             EEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE
T ss_pred             EECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh
Confidence            4444466666665432   2    468887753         2 88999999884     32  3334467889998765


Q ss_pred             ecCcEEEEEeCCeEEEEeCCCCE-EEEee---cCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-CeEEEEec--cCCC
Q psy9936          61 HLETMFAVAQKDWVYIYDNQGIE-LHCLK---VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-GKIVSDFS--AKKG  133 (315)
Q Consensus        61 ~~~~~l~~~~~~~i~i~~~~~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~--~~~~  133 (315)
                       ++. |+++.++.|.+|++.... +....   ....+.++...  ++++++|.....+.++..+. +..+..+.  ....
T Consensus        98 -~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~  173 (321)
T PF03178_consen   98 -NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR  173 (321)
T ss_dssp             -TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred             -CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence             444 888888999999985444 33322   22455555554  56899998888888875543 33233332  2344


Q ss_pred             CeEEEEEcCCCCEEEEEcCCCeEEEEcCCC-------Cc-ce---eEeecccccEEEE---EECC--CCC------EEEE
Q psy9936         134 KLSVMTQNPYNACICLGHRNGTVTMWSPTV-------QK-PL---ASLLCHKAGIQSV---AVNH--TGT------YMAT  191 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~-------~~-~~---~~~~~~~~~i~~~---~~sp--~g~------~l~~  191 (315)
                      .++++.+-++++.++.+..+|.+.++....       +. .+   ..+. ....|+++   ++.|  .+.      .++.
T Consensus       174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~  252 (321)
T PF03178_consen  174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILY  252 (321)
T ss_dssp             EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEE
T ss_pred             cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEE
Confidence            588888886777899999999999987652       11 12   2222 33567776   5555  222      4778


Q ss_pred             eeCCCcEEEE
Q psy9936         192 SAGDSQLRIW  201 (315)
Q Consensus       192 ~~~d~~i~iw  201 (315)
                      ++.+|.|.+.
T Consensus       253 ~T~~G~Ig~l  262 (321)
T PF03178_consen  253 GTVDGSIGVL  262 (321)
T ss_dssp             EETTS-EEEE
T ss_pred             EecCCEEEEE
Confidence            8889988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.38  E-value=0.0012  Score=57.23  Aligned_cols=226  Identities=12%  Similarity=0.158  Sum_probs=127.1

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEE-------------------------------------------EEe
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA-------------------------------------------CEM   48 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~-------------------------------------------~~~   48 (315)
                      .|+.+.|+++..-|++|...|.|.||.+...+..                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999889999999999999865422110                                           111


Q ss_pred             c-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEeec----------CCceEEEEEcC-----CC---ceEEEE
Q psy9936          49 N-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLKV----------LNKVTRMEFLP-----YH---FLLATA  108 (315)
Q Consensus        49 ~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~----------~~~v~~~~~~~-----~~---~~l~~~  108 (315)
                      . ..++|++++.+.-| ++|+|. +|.+.|.|+.+..+..-.+          ...++++.|+-     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            1 23567888876445 566665 8999999998876654321          14577888763     22   478899


Q ss_pred             cCCCeEEEEEcc--C-Ce----EEEEeccCCCCeEEEE-EcCC-C-------------------CEEEEEcCCCeEEEEc
Q psy9936         109 SEEGYLSWLDTS--I-GK----IVSDFSAKKGKLSVMT-QNPY-N-------------------ACICLGHRNGTVTMWS  160 (315)
Q Consensus       109 ~~d~~i~~~d~~--~-~~----~~~~~~~~~~~v~~~~-~~p~-~-------------------~~l~~~~~d~~i~i~d  160 (315)
                      +..|.+.+|.+.  . +.    .......+.+++..+. ++.+ |                   +-+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999874  1 21    1112223556665554 3222 1                   1233344467899999


Q ss_pred             CCCCcceeEeecccccEEEEEEC-----CCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-----CceeEEEccCCeE
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVN-----HTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-----PINNLAFSQRGLL  230 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~  230 (315)
                      .-+.+..+......-....+.+-     ..+..|++-..+|.|++|.+... +.+.....+.     .+...+++++|.+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDI  320 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCCCE
Confidence            88877665544222233334442     34667888889999999999988 7777776543     2567788888853


Q ss_pred             E-EEcCCEEE
Q psy9936         231 A-TSRGNIVE  239 (315)
Q Consensus       231 ~-~~~~~~i~  239 (315)
                      + -.+...+.
T Consensus       321 ~~~~gpsE~~  330 (395)
T PF08596_consen  321 FYWTGPSEIQ  330 (395)
T ss_dssp             EEE-SSSEEE
T ss_pred             EEEeCcccEE
Confidence            3 33444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114|consensus

Probab=98.37  E-value=6.5e-05  Score=68.22  Aligned_cols=185  Identities=14%  Similarity=0.106  Sum_probs=121.2

Q ss_pred             EEeecCcEEEEEe-CCeEEEEeCCCCEEEEeec-CCc-eEEEEEcCCCceEEEEcCCC-----eEEEEEccCC------e
Q psy9936          58 KWLHLETMFAVAQ-KDWVYIYDNQGIELHCLKV-LNK-VTRMEFLPYHFLLATASEEG-----YLSWLDTSIG------K  123 (315)
Q Consensus        58 ~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~------~  123 (315)
                      +|++.+..++.|+ +|.|.+++-.-+.+..+.. ... |..+-.....++|++.+.|+     .+++|++..-      .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            4667777777765 8999888865544344332 233 44443333446777776654     4899998632      2


Q ss_pred             EE--EEecc-----CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC---C-CcceeEeecccccEEEEEECCCCCEEEEe
Q psy9936         124 IV--SDFSA-----KKGKLSVMTQNPYNACICLGHRNGTVTMWSPT---V-QKPLASLLCHKAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       124 ~~--~~~~~-----~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~---~-~~~~~~~~~~~~~i~~~~~sp~g~~l~~~  192 (315)
                      ++  +.+..     .+.++.+++.+.+-+.+|+|-.+|.|..+.-+   . +....-......+|+.+++..++.-++..
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv  189 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV  189 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence            22  11111     35678899999999999999999999998632   1 11111112245799999999998864444


Q ss_pred             eCCCcEEEEEccCCCCCeeE-eccCC-CceeEEEccCC-eEEEEcCCEEEecCC
Q psy9936         193 AGDSQLRIWDVRNLEGPLNT-FRTRT-PINNLAFSQRG-LLATSRGNIVEFLKP  243 (315)
Q Consensus       193 ~~d~~i~iwd~~~~~~~~~~-~~~~~-~v~~~~~s~~g-~~~~~~~~~i~~~~~  243 (315)
                      ..-..|.+|.+.+. .|... +..++ ++.+.++++.. .++++++..+..+++
T Consensus       190 ~Tt~~V~~y~l~gr-~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~s  242 (933)
T KOG2114|consen  190 ATTEQVMLYSLSGR-TPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDS  242 (933)
T ss_pred             EecceeEEEEecCC-CcceeeeccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence            44557999999865 33333 44444 57888888765 488888888887776

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.35  E-value=0.00018  Score=65.58  Aligned_cols=182  Identities=11%  Similarity=0.071  Sum_probs=107.0

Q ss_pred             CceeEEEEeecCcEEEEEe-------CC--eEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCC-----------
Q psy9936          52 EEVYDIKWLHLETMFAVAQ-------KD--WVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEE-----------  111 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~-------~~--~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------  111 (315)
                      ..+.+.+.+|+|+.++...       +.  .|++++..+.. ..+..........|+|+|..+++....           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            3577889999998887654       32  56666764433 333333447889999998877776432           


Q ss_pred             -CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE---EcCCCCc-ce---eEee-cccccEEEEEE
Q psy9936         112 -GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM---WSPTVQK-PL---ASLL-CHKAGIQSVAV  182 (315)
Q Consensus       112 -~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i---~d~~~~~-~~---~~~~-~~~~~i~~~~~  182 (315)
                       +.+.+.++..+....   ...+.|..+.|||||..++... ++.|.+   -....|. .+   ..+. .....+.++.|
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence             233333443332222   2245699999999999887765 467776   4444443 11   1122 22334688999


Q ss_pred             CCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc---CCCceeEEEccCCeEEEEcCCEEE
Q psy9936         183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT---RTPINNLAFSQRGLLATSRGNIVE  239 (315)
Q Consensus       183 sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~g~~~~~~~~~i~  239 (315)
                      .+++.++ ++..++...+|.+.-.......+..   ..++..++=+++..|++..++.+.
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~  563 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQ  563 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEE
Confidence            9999855 5555554445554422122222232   235777877776567666666554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.32  E-value=0.00012  Score=67.81  Aligned_cols=130  Identities=12%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             CCCeEEEEEccCceEEEEecCCCceeEEEEeec--------CcEEEEEeCCeEEEEeCC--CCEEEE-----eecCCceE
Q psy9936          30 KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL--------ETMFAVAQKDWVYIYDNQ--GIELHC-----LKVLNKVT   94 (315)
Q Consensus        30 ~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~l~~~~~~~i~i~~~~--~~~~~~-----~~~~~~v~   94 (315)
                      ....|+-.|++.|+.+..+.....+.-..+.|+        ...+++-+++.+..||..  +..+..     ........
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            346789999999999999884443333344443        345666678899999973  333221     22335677


Q ss_pred             EEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          95 RMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        95 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      |++-+.+| +||+|+.+|.|++||--..+....+.+-..+|..|..+.||++++..+ +..+.+++.
T Consensus       582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            88777776 799999999999999432233334566678999999999999887655 456777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008|consensus

Probab=98.29  E-value=2.7e-07  Score=80.51  Aligned_cols=189  Identities=16%  Similarity=0.189  Sum_probs=124.8

Q ss_pred             CceeEEEEeec--CcEEEEEe-CCeEEEEeCCCC----EEEEeecCCceEEEEEcC-CCceEEEEc----CCCeEEEEEc
Q psy9936          52 EEVYDIKWLHL--ETMFAVAQ-KDWVYIYDNQGI----ELHCLKVLNKVTRMEFLP-YHFLLATAS----EEGYLSWLDT  119 (315)
Q Consensus        52 ~~v~~~~~~~~--~~~l~~~~-~~~i~i~~~~~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~d~~i~~~d~  119 (315)
                      ..+.|+++..+  ..++++|. +|.|-+-.....    .....++..+.++++|++ |.+.||+|-    .|..+.+||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            45777776654  34666665 788888776321    122334557889999998 456777773    3567999999


Q ss_pred             cCC--eEE--EEecc-CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECC-CCCEEEEe
Q psy9936         120 SIG--KIV--SDFSA-KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNH-TGTYMATS  192 (315)
Q Consensus       120 ~~~--~~~--~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~~~  192 (315)
                      .++  .+.  ..|.. ......+++|-.+.+++.+|.....+.++|++.. .....+  .+..+..+..+| .+.|+++.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            876  221  11222 3344668889888889999998889999999833 222222  234566778888 67788776


Q ss_pred             eCCCcEEEEE-ccCCCCCeeEeccCC-----CceeEEEccC--CeEEEE--cCCEEEecCC
Q psy9936         193 AGDSQLRIWD-VRNLEGPLNTFRTRT-----PINNLAFSQR--GLLATS--RGNIVEFLKP  243 (315)
Q Consensus       193 ~~d~~i~iwd-~~~~~~~~~~~~~~~-----~v~~~~~s~~--g~~~~~--~~~~i~~~~~  243 (315)
                      . ||.|.+|| .++-+.++..+....     .+..++|.|.  |++++.  ..++|+.+++
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            6 99999999 555445555544332     3889999996  443332  3667886665

>KOG4640|consensus

Probab=98.28  E-value=4.9e-06  Score=72.79  Aligned_cols=92  Identities=18%  Similarity=0.241  Sum_probs=78.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEE-EEEECCCCCEEEEeeCCCcEEEEEccCCCCCee
Q psy9936         133 GKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQ-SVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN  211 (315)
Q Consensus       133 ~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~  211 (315)
                      ..+.-+.|+|.-.++|++..+|.+.++.++ .+.+.++..|...++ +++|.|||+.||+|-.||+|++.|+.++ ..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~-~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG-GRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC-Ccee
Confidence            347778999999999999999999999998 777888887777777 9999999999999999999999999998 6666


Q ss_pred             E--eccCCCceeEEEcc
Q psy9936         212 T--FRTRTPINNLAFSQ  226 (315)
Q Consensus       212 ~--~~~~~~v~~~~~s~  226 (315)
                      .  +....+|..+.|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            5  33445688888864

>KOG3621|consensus

Probab=98.28  E-value=1.5e-05  Score=70.68  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=82.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC---E
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI---E   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~---~   83 (315)
                      +..|.--+++..+++++.|+..|.+++|+-.++.....-.  ..+.+..+..+++..++|.|+ .|.|.++-++..   .
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            4555556677889999999999999999977666543333  333455566777887777776 678888876321   1


Q ss_pred             EEEe-----ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC
Q psy9936          84 LHCL-----KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        84 ~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  121 (315)
                      ...+     .|...|++++|++++..+++|...|+|.+-.+.+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1222     2457899999999999999999999999888776

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.27  E-value=0.00064  Score=57.58  Aligned_cols=215  Identities=11%  Similarity=0.044  Sum_probs=104.8

Q ss_pred             EEcCCCCEEEEEcC-C--CeEEEEEccCceEEEEecCCC-ceeEEEEeecCcEEEE-EeCCeEEEEeCCCCEEEEeec-C
Q psy9936          17 NYTKNGRHLLLGGK-R--GHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAV-AQKDWVYIYDNQGIELHCLKV-L   90 (315)
Q Consensus        17 ~~s~~~~~l~~~~~-d--g~i~v~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~-~~~~~i~i~~~~~~~~~~~~~-~   90 (315)
                      +|.+||+.|+.++. +  ..+++.|+.+++..+.....+ ......++|+.+.++- .....|.-.|+.+.+...+-. .
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            56788987766554 3  468888999998877665432 2345667787777654 456688889997665544332 2


Q ss_pred             -CceEEEEEc--CCCceEEEEc----------------------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC-
Q psy9936          91 -NKVTRMEFL--PYHFLLATAS----------------------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN-  144 (315)
Q Consensus        91 -~~v~~~~~~--~~~~~l~~~~----------------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~-  144 (315)
                       ..+....|.  .++..++-.-                      ....|...|+.+|+....+. ....+.-+.|+|.. 
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence             333335553  3444433221                      12246667888887655554 34567889999954 


Q ss_pred             CEEEEEcC---CC-eEEEEcCCC-CcceeEeecc--cccEEEEEECCCCCEEEEee-----CCCcEEEEEccCCCCCeeE
Q psy9936         145 ACICLGHR---NG-TVTMWSPTV-QKPLASLLCH--KAGIQSVAVNHTGTYMATSA-----GDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       145 ~~l~~~~~---d~-~i~i~d~~~-~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~-----~d~~i~iwd~~~~~~~~~~  212 (315)
                      .+|+.|.+   +. .-+||-+++ +.....+..+  ...+..=-|.|||..|..-+     .+..|.-+|+.++ .....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~-~~~~~  279 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG-ERRRL  279 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT---EEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-CceEE
Confidence            45555532   22 124454432 3333333322  23455567999998665422     2445777788776 33322


Q ss_pred             eccCCCceeEEEccCCeEEEEc
Q psy9936         213 FRTRTPINNLAFSQRGLLATSR  234 (315)
Q Consensus       213 ~~~~~~v~~~~~s~~g~~~~~~  234 (315)
                      ...+ ....+.-++||.++++.
T Consensus       280 ~~~p-~~~H~~ss~Dg~L~vGD  300 (386)
T PF14583_consen  280 MEMP-WCSHFMSSPDGKLFVGD  300 (386)
T ss_dssp             EEE--SEEEEEE-TTSSEEEEE
T ss_pred             EeCC-ceeeeEEcCCCCEEEec
Confidence            2222 34566667888766653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=0.00065  Score=56.66  Aligned_cols=169  Identities=15%  Similarity=0.079  Sum_probs=109.9

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEec------CCCceeEEEEeecCcEEEEEeC------------CeEEEEeCCCCE
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMN------VMEEVYDIKWLHLETMFAVAQK------------DWVYIYDNQGIE   83 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~------------~~i~i~~~~~~~   83 (315)
                      +..|+++ .. .+.+++.+++.....+.      .....+.....|+|.+.++...            |.|+.++..+..
T Consensus        77 ~g~Lv~~-~~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~  154 (307)
T COG3386          77 GGRLIAC-EH-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV  154 (307)
T ss_pred             CCeEEEE-cc-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE
Confidence            3344443 23 36677766555532222      1235677888899988776433            456666765666


Q ss_pred             EEEeec-CCceEEEEEcCCCceEEEEcC-CCeEEEEEccC--C----eE-EEEeccCCCCeEEEEEcCCCCEEEEEcCCC
Q psy9936          84 LHCLKV-LNKVTRMEFLPYHFLLATASE-EGYLSWLDTSI--G----KI-VSDFSAKKGKLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        84 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~----~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      ...+.. ....+.++||||++.|+.+.. .+.|+-|++..  +    +. ...+....+..-.++...+|.+.+++..+|
T Consensus       155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g  234 (307)
T COG3386         155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG  234 (307)
T ss_pred             EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence            555554 566789999999987777754 47788887752  1    11 222333456677788888998776555554


Q ss_pred             -eEEEEcCCCCcceeEeecccccEEEEEEC-CCCCEEEEee
Q psy9936         155 -TVTMWSPTVQKPLASLLCHKAGIQSVAVN-HTGTYMATSA  193 (315)
Q Consensus       155 -~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~  193 (315)
                       .|.+|+.. ++.+..+.-+...+++++|- |+.+.|+..+
T Consensus       235 ~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         235 GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence             89999999 88898888665778888884 4555544443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.26  E-value=0.0017  Score=53.78  Aligned_cols=212  Identities=15%  Similarity=0.145  Sum_probs=125.7

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEE--------------
Q psy9936          20 KNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELH--------------   85 (315)
Q Consensus        20 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~--------------   85 (315)
                      ..++.|+.|+.+| +++++..............+|..+...|+-+.+++-+|+.++++++..-...              
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence            4578899999888 9999984333333333444599999999888888888899999997421111              


Q ss_pred             --EeecCCceEEEE--EcCCC-ceEEEEcCCCeEEEEEccCC-----eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936          86 --CLKVLNKVTRME--FLPYH-FLLATASEEGYLSWLDTSIG-----KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus        86 --~~~~~~~v~~~~--~~~~~-~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                        .+.....+...+  -.+.+ ..|+++ ...+|.+|.....     +....+.. ...+..++|.  ++.++.|..+ .
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~  158 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-G  158 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-c
Confidence              112223444444  11233 344444 4458888887643     34445543 4668889998  5567777644 5


Q ss_pred             EEEEcCCCCcceeEeecc------------cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCe--eEeccCCCcee
Q psy9936         156 VTMWSPTVQKPLASLLCH------------KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL--NTFRTRTPINN  221 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~------------~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~  221 (315)
                      ..+.|+.++.....+...            ..++..+.. +++.+|++-  |..-.+.|...  .+.  ..+.....+.+
T Consensus       159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G--~~~r~~~i~W~~~p~~  233 (275)
T PF00780_consen  159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG--EPSRKSTIQWSSAPQS  233 (275)
T ss_pred             eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC--CcCcccEEEcCCchhE
Confidence            888899876543332211            123333333 345666542  33344444433  333  34555556777


Q ss_pred             EEEccCCeEEEEcCCEEEecCC
Q psy9936         222 LAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       222 ~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +++... .+++-.++.|.+++.
T Consensus       234 ~~~~~p-yli~~~~~~iEV~~~  254 (275)
T PF00780_consen  234 VAYSSP-YLIAFSSNSIEVRSL  254 (275)
T ss_pred             EEEECC-EEEEECCCEEEEEEC
Confidence            777543 566666777888876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1645|consensus

Probab=98.26  E-value=3.2e-06  Score=70.02  Aligned_cols=101  Identities=14%  Similarity=0.182  Sum_probs=80.8

Q ss_pred             EEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCC-EEEE
Q psy9936         114 LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT-YMAT  191 (315)
Q Consensus       114 i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~  191 (315)
                      +++++..+.+...-+..+...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+++.+|.-|.. +++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            55555555555555566777899999999888 7888999999999999999888888876 8899999998754 7778


Q ss_pred             eeCCCcEEEEEccCCCCCeeEecc
Q psy9936         192 SAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      |..+|.|.|||++....++..+..
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVA  277 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhh
Confidence            888999999999987555555543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.21  E-value=0.0016  Score=58.69  Aligned_cols=215  Identities=16%  Similarity=0.157  Sum_probs=124.8

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCCCce---eEEEEee---cCcEEEEEe---------CCeEEEEeCC-CCEEEE
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVMEEV---YDIKWLH---LETMFAVAQ---------KDWVYIYDNQ-GIELHC   86 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v---~~~~~~~---~~~~l~~~~---------~~~i~i~~~~-~~~~~~   86 (315)
                      ..++.++.+|.|+-+|.++|+.+..+.....+   ..+.-+|   ++.+++.+.         ++.++-+|.. ++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57777888999999999999988877643321   1111112   344444322         4678888884 554444


Q ss_pred             eecC-C--------------------ce-EEEEEcCCCceEEEEcCCC------------------eEEEEEccCCeEEE
Q psy9936          87 LKVL-N--------------------KV-TRMEFLPYHFLLATASEEG------------------YLSWLDTSIGKIVS  126 (315)
Q Consensus        87 ~~~~-~--------------------~v-~~~~~~~~~~~l~~~~~d~------------------~i~~~d~~~~~~~~  126 (315)
                      .... .                    .+ ...++.+.+..++.++.++                  .+.-+|..+|+.+-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            3321 0                    01 1244455566777787665                  79999999999887


Q ss_pred             EeccCCCCe------EEEEEc----CCCC---EEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEe-
Q psy9936         127 DFSAKKGKL------SVMTQN----PYNA---CICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATS-  192 (315)
Q Consensus       127 ~~~~~~~~v------~~~~~~----p~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~-  192 (315)
                      .++......      ....+.    -+|.   .++.++.+|.+...|.++++.+......   ...++.+| + .++.+ 
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~  345 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGA  345 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEcc
Confidence            764211111      001111    1333   6778888999999999999988765421   11233444 2 22222 


Q ss_pred             -----------------eCCCcEEEEEccCCCCCeeEeccC---------CCc--eeEEEccCCeEEEEcCCEEEecCC
Q psy9936         193 -----------------AGDSQLRIWDVRNLEGPLNTFRTR---------TPI--NNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       193 -----------------~~d~~i~iwd~~~~~~~~~~~~~~---------~~v--~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                                       ..+|.+.-.|+.++ +.+-.....         .+.  ..+....+-.++++.++.+..++.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~  423 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA  423 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence                             23567888888888 665555433         111  123333333556667888885554

The alignment model contains an 8-bladed beta-propeller.

>KOG4640|consensus

Probab=98.21  E-value=1.1e-05  Score=70.73  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeE
Q psy9936          91 NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLS-VMTQNPYNACICLGHRNGTVTMWSPTVQKPLAS  169 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~  169 (315)
                      ..+.-+.|+|.-.++|.+..+|.+.++.+. .+.+.++..|...++ +++|.|||+.||+|-.||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            567789999999999999999999999988 777788876666676 999999999999999999999999999887776


Q ss_pred             ee-cccccEEEEEECC
Q psy9936         170 LL-CHKAGIQSVAVNH  184 (315)
Q Consensus       170 ~~-~~~~~i~~~~~sp  184 (315)
                      +. .....|.++-|+|
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            32 2456788888874

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.20  E-value=0.00031  Score=48.28  Aligned_cols=100  Identities=19%  Similarity=0.195  Sum_probs=71.5

Q ss_pred             EEEEEEcC---CC-CEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee
Q psy9936          13 IYRMNYTK---NG-RHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        13 v~~~~~s~---~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~   88 (315)
                      |++|++..   || +.|++|+.|..|++|+-  .+.+..+...+.|.++.-...+++...-.+|+|-+|+-.... ...+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl-WRiK   78 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL-WRIK   78 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCccee-eeec
Confidence            55666554   44 48899999999999983  467778888888999988888776666679999999874433 3344


Q ss_pred             cCCceEEEEEcC-C--C-ceEEEEcCCCeEE
Q psy9936          89 VLNKVTRMEFLP-Y--H-FLLATASEEGYLS  115 (315)
Q Consensus        89 ~~~~v~~~~~~~-~--~-~~l~~~~~d~~i~  115 (315)
                      ....+.++.+.. +  | .-|++|-.+|.|-
T Consensus        79 SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   79 SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            444566665544 2  2 3688888888764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.19  E-value=0.0014  Score=57.77  Aligned_cols=213  Identities=13%  Similarity=0.072  Sum_probs=114.6

Q ss_pred             EEEEEcCCCCEEEEE-cCC----CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C-----------CeEEE
Q psy9936          14 YRMNYTKNGRHLLLG-GKR----GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K-----------DWVYI   76 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~-~~d----g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-----------~~i~i   76 (315)
                      ....+||||+++|.+ +..    ..++++|+.+++.+...-.......+.|.++++.|.... +           ..|+.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            357899999999865 222    369999999998765321111122399999987766553 2           14788


Q ss_pred             EeCCCC--E-EEEeecC--Cc-eEEEEEcCCCceEEEEcC---C-CeEEEEEccCC-----eEEEEeccCCCCeEEEEEc
Q psy9936          77 YDNQGI--E-LHCLKVL--NK-VTRMEFLPYHFLLATASE---E-GYLSWLDTSIG-----KIVSDFSAKKGKLSVMTQN  141 (315)
Q Consensus        77 ~~~~~~--~-~~~~~~~--~~-v~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~~  141 (315)
                      |.+.+.  . ...+...  .. ...+..++++++++....   + ..+.+.|+..+     ..........+....+...
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~  286 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH  286 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence            887322  1 2233322  33 568889999998775432   2 45888888764     2333233223333334333


Q ss_pred             CCCCEEEEEc---CCCeEEEEcCCCCcc---eeEeecccccEEEEEECCCCCEEEEee-CCC--cEEEEEccCCCCCeeE
Q psy9936         142 PYNACICLGH---RNGTVTMWSPTVQKP---LASLLCHKAGIQSVAVNHTGTYMATSA-GDS--QLRIWDVRNLEGPLNT  212 (315)
Q Consensus       142 p~~~~l~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~--~i~iwd~~~~~~~~~~  212 (315)
                       .+.+++...   .++.|.-.++.+...   ...+..+...+.-..+...+.+|+... .++  .|+++++..+ .....
T Consensus       287 -~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~-~~~~~  364 (414)
T PF02897_consen  287 -GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG-KESRE  364 (414)
T ss_dssp             -TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T-EEEEE
T ss_pred             -CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC-cEEee
Confidence             444444332   346777788887653   224444554333233334555665554 343  5889999822 44444


Q ss_pred             eccCC--CceeEEEccCC
Q psy9936         213 FRTRT--PINNLAFSQRG  228 (315)
Q Consensus       213 ~~~~~--~v~~~~~s~~g  228 (315)
                      +....  .|..+...+++
T Consensus       365 ~~~p~~g~v~~~~~~~~~  382 (414)
T PF02897_consen  365 IPLPEAGSVSGVSGDFDS  382 (414)
T ss_dssp             EESSSSSEEEEEES-TT-
T ss_pred             ecCCcceEEeccCCCCCC
Confidence            44333  24555544444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=0.002  Score=51.77  Aligned_cols=233  Identities=13%  Similarity=0.076  Sum_probs=136.8

Q ss_pred             eeCCCcEEEEEEcCCCC-EEEEEcCCCe-EEEEEccCceEEEEecCCCc---eeEEEEeecCcEEEEEe------CCeEE
Q psy9936           7 LDLQFGIYRMNYTKNGR-HLLLGGKRGH-VAAFDWVRKTLACEMNVMEE---VYDIKWLHLETMFAVAQ------KDWVY   75 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~-i~v~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~------~~~i~   75 (315)
                      +.+...-..|+|+|... .++.+-.-|+ ..++|..+.+...++.....   --.=.|+|||.+|....      .|.|-
T Consensus        64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViG  143 (366)
T COG3490          64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEE
Confidence            33355556777888554 4555555554 56788887776655542221   22346899999998774      26899


Q ss_pred             EEeCCCCEEE--Eee-cCCceEEEEEcCCCceEEEEcC------------------CCeEEEEEccCCeEEEEe--c--c
Q psy9936          76 IYDNQGIELH--CLK-VLNKVTRMEFLPYHFLLATASE------------------EGYLSWLDTSIGKIVSDF--S--A  130 (315)
Q Consensus        76 i~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~--~--~  130 (315)
                      +||....-.+  .+. +.-....+.|.+||..++.+..                  .-++.+.|..+|..+...  .  .
T Consensus       144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l  223 (366)
T COG3490         144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL  223 (366)
T ss_pred             EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence            9998632211  222 2345677899999999887743                  112344454455444332  1  2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCCe-----EEEEcCCCCcceeEeec-------ccccEEEEEECCCCCEEEEeeC-CCc
Q psy9936         131 KKGKLSVMTQNPYNACICLGHRNGT-----VTMWSPTVQKPLASLLC-------HKAGIQSVAVNHTGTYMATSAG-DSQ  197 (315)
Q Consensus       131 ~~~~v~~~~~~p~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~-------~~~~i~~~~~sp~g~~l~~~~~-d~~  197 (315)
                      +.-.+..++..+||..++-+-..|.     .-+=-.+.++++.-+..       ....|-+|+.+.+..+++..+- .+.
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~  303 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR  303 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence            3345777888888876655432221     11111223344433321       2345677888766556655554 446


Q ss_pred             EEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCEEEec
Q psy9936         198 LRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFL  241 (315)
Q Consensus       198 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~i~~~  241 (315)
                      ..+||..++ ..+..-... .+..++-...|..+.+++|.+...
T Consensus       304 ~vi~da~tG-~vv~~a~l~-daaGva~~~~gf~vssg~G~~~~~  345 (366)
T COG3490         304 AVIWDAATG-AVVSEAALP-DAAGVAAAKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             EEEEEcCCC-cEEeccccc-ccccceeccCceEEecCCceEEec
Confidence            889999998 655543322 345566667788888888888754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.13  E-value=0.00047  Score=64.05  Aligned_cols=138  Identities=15%  Similarity=0.235  Sum_probs=90.2

Q ss_pred             cEEEEEe--CCeEEEEeCC-CCEEEEeecCCceEEEEEcCC-------CceEEEEcCCCeEEEEEccCCe--EEEE-e--
Q psy9936          64 TMFAVAQ--KDWVYIYDNQ-GIELHCLKVLNKVTRMEFLPY-------HFLLATASEEGYLSWLDTSIGK--IVSD-F--  128 (315)
Q Consensus        64 ~~l~~~~--~~~i~i~~~~-~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~~~d~~~~~--~~~~-~--  128 (315)
                      .+|....  .+.|+-.|++ |+.+........+.-..+.|+       ....+.|-.+..+..||++-..  .+.. .  
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            4444432  4678888885 555555554433323344443       2345667778889999998532  2321 1  


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         129 SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       129 ~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      .......+|++-+.+| +||+|+.+|.||+||--..+.-..+.+...+|.+|..+.||+|+++.+.. .+.|++.
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            1123457788877777 78999999999999954333344566778999999999999998766544 5667775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.12  E-value=0.00033  Score=63.85  Aligned_cols=178  Identities=9%  Similarity=0.012  Sum_probs=100.6

Q ss_pred             cEEEEEEcCCCCEEEEEc------CC--CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCC-----------
Q psy9936          12 GIYRMNYTKNGRHLLLGG------KR--GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD-----------   72 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~------~d--g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----------   72 (315)
                      .+...++||||+.++...      .+  ..|.+++.. +... .+........-.|+|+|..+.+..++           
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~-~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAV-QVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccce-eeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            467889999999887654      23  356666653 3222 22222347888999998877766543           


Q ss_pred             --eEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEE---EEccCCe-EE---EEecc-CCCCeEEEEEcC
Q psy9936          73 --WVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSW---LDTSIGK-IV---SDFSA-KKGKLSVMTQNP  142 (315)
Q Consensus        73 --~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~---~d~~~~~-~~---~~~~~-~~~~v~~~~~~p  142 (315)
                        .+++.++++.+... .....|..+.|||||..++... ++.|++   -....|. .+   ..+.. -...+..+.|.+
T Consensus       429 ~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~  506 (591)
T PRK13616        429 TGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT  506 (591)
T ss_pred             CceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence              23333333332222 2245799999999999887765 477777   4434443 11   11221 223357899999


Q ss_pred             CCCEEEEEcCCCe--EEEEcCCCCcceeEeec--ccccEEEEEECCCCCEEEEeeCCCc
Q psy9936         143 YNACICLGHRNGT--VTMWSPTVQKPLASLLC--HKAGIQSVAVNHTGTYMATSAGDSQ  197 (315)
Q Consensus       143 ~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~d~~  197 (315)
                      ++.++ ++..++.  +...++... ....+..  ...++..|+=+++  .++....++.
T Consensus       507 ~~~L~-V~~~~~~~~v~~v~vDG~-~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        507 GDSLV-VGRSDPEHPVWYVNLDGS-NSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             CCEEE-EEecCCCCceEEEecCCc-cccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            99855 4444443  444444422 2222222  2456677776663  3445555653

>KOG3621|consensus

Probab=98.12  E-value=4.4e-05  Score=67.86  Aligned_cols=115  Identities=13%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce--
Q psy9936          91 NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL--  167 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~--  167 (315)
                      ..+.--+++..+++++.|+.-|.+++|+-..++.... ..+..+.+.....|++..++|.|+..|.|.++-+....+-  
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            3444455667789999999999999999766543322 2234455667788999999999999999999998764321  


Q ss_pred             ---eEee-cccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         168 ---ASLL-CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       168 ---~~~~-~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                         .... .|...|++++|++++..+++|...|.|.+-.+..
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence               1111 3678999999999999999999999998887766

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.08  E-value=0.0025  Score=51.44  Aligned_cols=181  Identities=12%  Similarity=0.109  Sum_probs=118.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC--CEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG--IEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~--~~~   84 (315)
                      ...+.++.|+|+.+.|++......-.|+=..+|+.+..+.  .-...-.+.|..+|++.++-. ++.++++.++.  ..+
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            5568999999999999888877777777667889888876  334456678888888777765 67888876632  211


Q ss_pred             E------Eee---c-CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe-E--EEEeccC-------CCCeEEEEEcC-C
Q psy9936          85 H------CLK---V-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK-I--VSDFSAK-------KGKLSVMTQNP-Y  143 (315)
Q Consensus        85 ~------~~~---~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~--~~~~~~~-------~~~v~~~~~~p-~  143 (315)
                      .      .+.   + ......++|.|....|+.+-+..-+.+|....+. .  ++....+       -..+.++.|++ .
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence            1      111   1 3567889999999888888877777777665322 1  1111111       12367788887 4


Q ss_pred             CCEEEEEcCCCeEEEEcCCCCcceeEeeccc---------ccEEEEEECCCCCEEEE
Q psy9936         144 NACICLGHRNGTVTMWSPTVQKPLASLLCHK---------AGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       144 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~sp~g~~l~~  191 (315)
                      +.+|+.+.+++.+.-.|.. |.++..+.-+.         -....++..++|...++
T Consensus       245 ~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         245 NSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             CcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            5577777788888888876 44444433111         13346777777764443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.03  E-value=0.0053  Score=50.83  Aligned_cols=194  Identities=13%  Similarity=0.124  Sum_probs=118.3

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE---------------EecCCCceeEEE---EeecCcEEEEEeCC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC---------------EMNVMEEVYDIK---WLHLETMFAVAQKD   72 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~---------------~~~~~~~v~~~~---~~~~~~~l~~~~~~   72 (315)
                      ..|..+...|+-+.|++-+ |+.++++++.......               .+.....+..++   -......|+++...
T Consensus        36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence            4488888888877777654 5899999987554333               222233444444   12245677888888


Q ss_pred             eEEEEeCCC------CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC------------CCC
Q psy9936          73 WVYIYDNQG------IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK------------KGK  134 (315)
Q Consensus        73 ~i~i~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------~~~  134 (315)
                      .|.+|....      .....+.....+.+++|.  ++.++.|..+ ...+.|+.++.....+...            ..+
T Consensus       115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (275)
T PF00780_consen  115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP  191 (275)
T ss_pred             EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCc
Confidence            888887632      344556666889999999  4567777644 5888999877554433211            122


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                      +..+.. +++.+|++-  +..-.+.|.. |++.+  .+.. ...+..+++.  ..||+..+.+ .|.||++.++ ++++.
T Consensus       192 ~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~-~lvQ~  262 (275)
T PF00780_consen  192 LGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETG-ELVQT  262 (275)
T ss_pred             eEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEc-CCchhEEEEE--CCEEEEECCC-EEEEEECcCC-cEEEE
Confidence            333333 345555543  3344444543 44333  3332 2344566663  3477666554 5999999999 88888


Q ss_pred             eccCC
Q psy9936         213 FRTRT  217 (315)
Q Consensus       213 ~~~~~  217 (315)
                      +..+.
T Consensus       263 i~~~~  267 (275)
T PF00780_consen  263 IPLPN  267 (275)
T ss_pred             EECCC
Confidence            87553

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499|consensus

Probab=98.01  E-value=0.004  Score=48.61  Aligned_cols=132  Identities=14%  Similarity=0.029  Sum_probs=89.6

Q ss_pred             CceeEEEEeecCcEEEEEe-C---------CeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEE-EEcCCCeEEEEE--
Q psy9936          52 EEVYDIKWLHLETMFAVAQ-K---------DWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLA-TASEEGYLSWLD--  118 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~-~---------~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d--  118 (315)
                      ...++-..+|+|++++... +         |.++.|-..++.-.......--+.++|+.+.+.++ +-+.+-+|.-||  
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd  188 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD  188 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence            3566777889999976553 1         45666666544333333334456789998776554 456677787777  


Q ss_pred             ccCCe-----EEEEecc----CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEEC
Q psy9936         119 TSIGK-----IVSDFSA----KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVN  183 (315)
Q Consensus       119 ~~~~~-----~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  183 (315)
                      ..+|.     .+..++.    ..-..-.++...+|++.+++-..++|...|..+|+.+.++.-....|++++|-
T Consensus       189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            55553     2222222    11123446667788888888888999999999999999998888899999995

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.96  E-value=0.011  Score=51.90  Aligned_cols=185  Identities=14%  Similarity=0.139  Sum_probs=100.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---CCCc-----eeEEEEeecCcEEEEEeCCeEEEEeC-C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEE-----VYDIKWLHLETMFAVAQKDWVYIYDN-Q   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~-----v~~~~~~~~~~~l~~~~~~~i~i~~~-~   80 (315)
                      .+.+.++.|+.+..++ +...||.+++||+.... ...+.   ....     +....+..+|-.+ ...++.+++.+- +
T Consensus        80 ~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~Givv-Lt~~~~~~~v~n~~  156 (410)
T PF04841_consen   80 SGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVV-LTGNNRFYVVNNID  156 (410)
T ss_pred             CCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEE-ECCCCeEEEEeCcc
Confidence            4788899998865555 45689999999986443 21111   1112     2223344456333 334555555433 2


Q ss_pred             CC-EEEEeec-CC---------ceEE-EEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE
Q psy9936          81 GI-ELHCLKV-LN---------KVTR-MEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        81 ~~-~~~~~~~-~~---------~v~~-~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  148 (315)
                      .. ....+.. ..         .... ..++.+....+....++.+.+.+-...+.   +. ..+++..|++||+|+++|
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEE
Confidence            21 1111110 00         0000 22333444444444444555444222111   21 236799999999999999


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecc-cccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      .-..+|.+.+...+-.+.+..+... ...+..+.|+-+...++.-  ...+.+...
T Consensus       233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~  286 (410)
T PF04841_consen  233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP  286 (410)
T ss_pred             EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence            9999999999887666666666533 3466788887665433332  334555553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.95  E-value=2.8e-05  Score=42.33  Aligned_cols=38  Identities=32%  Similarity=0.664  Sum_probs=33.8

Q ss_pred             cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEE
Q psy9936         165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD  202 (315)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd  202 (315)
                      +++..+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45666778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649|consensus

Probab=97.94  E-value=0.006  Score=48.41  Aligned_cols=141  Identities=15%  Similarity=0.112  Sum_probs=93.3

Q ss_pred             CCC-CEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEEeecCCceE-E
Q psy9936          20 KNG-RHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHCLKVLNKVT-R   95 (315)
Q Consensus        20 ~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~~~~~~~v~-~   95 (315)
                      +|. .+++.|+-.+.+.-.|..+|+..........+-+-+.. -|.+++.|. .|.+++.+.++ .....+...+.|. .
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            444 46677888888888999999887665544555444433 344565554 88999999854 4555554444443 3


Q ss_pred             EEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeEEEEcCC
Q psy9936          96 MEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        96 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d~~  162 (315)
                      ....+++..+++++.|++.+..|.++...+...+...+...+-+..| ++. |+.+...|.+.--..+
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKN  165 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccC
Confidence            44577899999999999999999999888888765555444556666 444 3333344544444433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.93  E-value=0.0047  Score=53.60  Aligned_cols=195  Identities=13%  Similarity=0.114  Sum_probs=108.4

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC---------CCceeEEEEee-----cC---cEEEE
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV---------MEEVYDIKWLH-----LE---TMFAV   68 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~---------~~~v~~~~~~~-----~~---~~l~~   68 (315)
                      ++. .++|++++.|.-| ++|.|..+|.+.|.|+.....+..-..         ...++++.|.-     |+   -++.+
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            344 7999999998655 999999999999999988887765331         23578888874     22   34555


Q ss_pred             Ee-CCeEEEEeCC----C-CEEEE---e-ecCCceEEEE-EcCC-C-------------------ceEEEEcCCCeEEEE
Q psy9936          69 AQ-KDWVYIYDNQ----G-IELHC---L-KVLNKVTRME-FLPY-H-------------------FLLATASEEGYLSWL  117 (315)
Q Consensus        69 ~~-~~~i~i~~~~----~-~~~~~---~-~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~i~~~  117 (315)
                      |. .|.+.+|.+.    + .....   . .+.+++..+. ++.+ |                   +.+++...+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            54 6899999762    1 11111   1 2335554444 2222 0                   123334446689999


Q ss_pred             EccCCeEEEEeccCCCCeEEEEEc-----CCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc----ccEEEEEECCCCCE
Q psy9936         118 DTSIGKIVSDFSAKKGKLSVMTQN-----PYNACICLGHRNGTVTMWSPTVQKPLASLLCHK----AGIQSVAVNHTGTY  188 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~sp~g~~  188 (315)
                      .+.+.+..+......-....+.+-     ..+..|++-..+|.+++|.+-.-+.+..+..+.    ..+....++++|..
T Consensus       241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI  320 (395)
T ss_dssp             -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred             eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence            998877666544222223334442     345678888899999999999888887776432    23445677899997


Q ss_pred             EEEeeCCCcEEEEEc
Q psy9936         189 MATSAGDSQLRIWDV  203 (315)
Q Consensus       189 l~~~~~d~~i~iwd~  203 (315)
                      ++..+.. .+.++.+
T Consensus       321 ~~~~gps-E~~l~sv  334 (395)
T PF08596_consen  321 FYWTGPS-EIQLFSV  334 (395)
T ss_dssp             EEE-SSS-EEEEEEE
T ss_pred             EEEeCcc-cEEEEEE
Confidence            7766544 3444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.93  E-value=0.0045  Score=55.76  Aligned_cols=192  Identities=14%  Similarity=0.132  Sum_probs=114.2

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCCc-------e--eEEEEeecCcEEEEEeCCeEEEEeCC-CCEEEEeecCC
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEE-------V--YDIKWLHLETMFAVAQKDWVYIYDNQ-GIELHCLKVLN   91 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-------v--~~~~~~~~~~~l~~~~~~~i~i~~~~-~~~~~~~~~~~   91 (315)
                      +..+++++.++.++-+|..+++.+..+.....       +  ..+....++..++...++.|+-+|.+ ++.+.......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            34566677789999999999998777653221       0  01111112555555568999999984 55554443322


Q ss_pred             ce---EEEEEcC--CCceEEEEc---------CCCeEEEEEccCCeEEEEeccCCCC--------------------e-E
Q psy9936          92 KV---TRMEFLP--YHFLLATAS---------EEGYLSWLDTSIGKIVSDFSAKKGK--------------------L-S  136 (315)
Q Consensus        92 ~v---~~~~~~~--~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~--------------------v-~  136 (315)
                      .+   ..+.-+|  .+..++.++         .++.+..+|..+|+.+-.+......                    + .
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            21   1111122  123455543         3678999999999887766432110                    0 1


Q ss_pred             EEEEcCCCCEEEEEcCCC------------------eEEEEcCCCCcceeEeec--cccc----EEEEEEC----CCCC-
Q psy9936         137 VMTQNPYNACICLGHRNG------------------TVTMWSPTVQKPLASLLC--HKAG----IQSVAVN----HTGT-  187 (315)
Q Consensus       137 ~~~~~p~~~~l~~~~~d~------------------~i~i~d~~~~~~~~~~~~--~~~~----i~~~~~s----p~g~-  187 (315)
                      ..++.+.+..++.++.++                  .|.-+|+.+++.+..++.  |...    .....+.    -+|. 
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            234455566777776554                  799999999998877652  2110    0011111    1333 


Q ss_pred             --EEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         188 --YMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       188 --~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                        .++.++.+|.+...|.+++ +++....
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG-~~~W~~~  328 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTG-KLISARP  328 (488)
T ss_pred             eEEEEEECCCceEEEEECCCC-cEeeEeE
Confidence              6778888999999999999 7766544

The alignment model contains an 8-bladed beta-propeller.

>KOG1832|consensus

Probab=97.92  E-value=2.5e-05  Score=71.19  Aligned_cols=82  Identities=16%  Similarity=0.309  Sum_probs=69.1

Q ss_pred             EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC--cEEEE
Q psy9936         124 IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS--QLRIW  201 (315)
Q Consensus       124 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--~i~iw  201 (315)
                      ....|..|....++++|+.+.+.|++|+..|.|++|++.+|.......+|.++|+.+.=+.+|..+++.+.-.  -..+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            4456667888899999999999999999999999999999999999999999999999888998777765433  35677


Q ss_pred             EccC
Q psy9936         202 DVRN  205 (315)
Q Consensus       202 d~~~  205 (315)
                      ++..
T Consensus      1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred             cccc
Confidence            7654

>KOG2280|consensus

Probab=97.91  E-value=0.0031  Score=57.12  Aligned_cols=227  Identities=12%  Similarity=0.134  Sum_probs=128.4

Q ss_pred             CCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEE--eec---CCceEEEEEcCCCce
Q psy9936          31 RGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHC--LKV---LNKVTRMEFLPYHFL  104 (315)
Q Consensus        31 dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~--~~~---~~~v~~~~~~~~~~~  104 (315)
                      .-.|+||+. +|+++..+. ....+-.+.|+.+..+|++..+|++++|++.+..+..  ...   ...|..+.+..+|  
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--  139 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--  139 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence            345888885 566655544 3347889999999999999999999999997765544  211   1446556666566  


Q ss_pred             EEEEcCCCeEEEEEccCCeEEEEecc---CCCCeEEEEEcCCCC---EEEEEc-CCCeEEEEcCCCC-cceeEeeccccc
Q psy9936         105 LATASEEGYLSWLDTSIGKIVSDFSA---KKGKLSVMTQNPYNA---CICLGH-RNGTVTMWSPTVQ-KPLASLLCHKAG  176 (315)
Q Consensus       105 l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~p~~~---~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~  176 (315)
                      +++-..+|.+.+.+-........+..   .....++-...+++.   .++-.. ..+ ..++..... .....+....+.
T Consensus       140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~  218 (829)
T KOG2280|consen  140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS  218 (829)
T ss_pred             eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence            44444556655544221112222221   111112222222221   111111 011 111111111 112223323456


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec--cCCCceeEEEccCCeEEEEcCCEEEecCC----------C
Q psy9936         177 IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR--TRTPINNLAFSQRGLLATSRGNIVEFLKP----------P  244 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~i~~~~~----------~  244 (315)
                      +..+..||+.++|+.=...|.|.+-+.... +.+..+.  .+.+.-.++|..+.-++.+....+....|          .
T Consensus       219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~yd~  297 (829)
T KOG2280|consen  219 VVKISVSPNRRFLALYTETGKIWVVSIDLS-QILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYYDE  297 (829)
T ss_pred             EEEEEEcCCcceEEEEecCCcEEEEecchh-hhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCccccccCC
Confidence            778999999999999999999999988877 7777766  44556688888776555454444443333          1


Q ss_pred             --ceeecccccccccCCcch
Q psy9936         245 --EINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       245 --~~~~~~~~~~~~~~~~~~  262 (315)
                        .+.-.+||-.+.+.++-.
T Consensus       298 t~~l~~E~DGVRI~t~t~~E  317 (829)
T KOG2280|consen  298 TAILSAEVDGVRIITSTSHE  317 (829)
T ss_pred             CceeeeccCeeEEeccchHH
Confidence              233345676665555433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.89  E-value=0.01  Score=49.42  Aligned_cols=226  Identities=13%  Similarity=0.130  Sum_probs=107.7

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEE--EEecCC----CceeEEEEeecCcEEEEEeCCeEEEEeCC
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA--CEMNVM----EEVYDIKWLHLETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~~~----~~v~~~~~~~~~~~l~~~~~~~i~i~~~~   80 (315)
                      +..+.++..|.|..+..-+++|. .+.| +-..+.|+.=  ......    -...++.|.. ...++++..+.|..-.-.
T Consensus        13 l~t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG~~g~ll~T~Dg   89 (302)
T PF14870_consen   13 LPTDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVGEPGLLLHTTDG   89 (302)
T ss_dssp             -S-SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEEETTEEEEESST
T ss_pred             cCCCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecC-CceEEEcCCceEEEecCC
Confidence            33478899999996666666665 4543 2333333311  111111    2356677754 455666666654333333


Q ss_pred             CCEEEEeec----CCceEEEEEcCCCceEEEEcCCCeEEEEEccC-Ce-EEEEeccCCCCeEEEEEcCCCCEEEEEcCCC
Q psy9936          81 GIELHCLKV----LNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-GK-IVSDFSAKKGKLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        81 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      +.....+..    ......+....++..+++ +..|.|  |-... |+ -........+.+..+..+++|++++++..-.
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~  166 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN  166 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence            443333321    233344444444433333 334443  33322 32 2222333456788888999999999988777


Q ss_pred             eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc-CC---CCCeeEecc-CCCceeEEEccCC-
Q psy9936         155 TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR-NL---EGPLNTFRT-RTPINNLAFSQRG-  228 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~-~~---~~~~~~~~~-~~~v~~~~~s~~g-  228 (315)
                      ...-||.-...-...-......|..+.|+|++.+.+++ ..|.|++=+.. ..   .+++..+.. ...+.+++|.+++ 
T Consensus       167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~  245 (302)
T PF14870_consen  167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE  245 (302)
T ss_dssp             EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred             EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence            77788854322222222346789999999998876654 77778777621 11   111111111 1257899999887 


Q ss_pred             eEEEEcCCEEE
Q psy9936         229 LLATSRGNIVE  239 (315)
Q Consensus       229 ~~~~~~~~~i~  239 (315)
                      .+++++++++.
T Consensus       246 ~wa~gg~G~l~  256 (302)
T PF14870_consen  246 IWAVGGSGTLL  256 (302)
T ss_dssp             EEEEESTT-EE
T ss_pred             EEEEeCCccEE
Confidence            46777777666

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=0.0018  Score=51.95  Aligned_cols=158  Identities=13%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             EEeCCCCEEEEeecCCceEEEEEcCCC-ceEEEEcCCCe-EEEEEccCCeEEEEeccCCCC--eEEEEEcCCCCEEEEEc
Q psy9936          76 IYDNQGIELHCLKVLNKVTRMEFLPYH-FLLATASEEGY-LSWLDTSIGKIVSDFSAKKGK--LSVMTQNPYNACICLGH  151 (315)
Q Consensus        76 i~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~  151 (315)
                      .++..++.+....-......++++|.. .-++.+-.-|+ ..++|....+...++....+.  .-.=.|||||.+|+..-
T Consensus        53 ~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATE  132 (366)
T COG3490          53 TLSEAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATE  132 (366)
T ss_pred             EEccCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeec
Confidence            344455555555555566678888874 45666666665 667888877655554332221  11236899999988653


Q ss_pred             C-----CCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEEEeeC------C------------CcEEEEEccCCC
Q psy9936         152 R-----NGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMATSAG------D------------SQLRIWDVRNLE  207 (315)
Q Consensus       152 ~-----d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~------d------------~~i~iwd~~~~~  207 (315)
                      .     .|.|-|||.+.+ +.+.++..|.-....+.|.+||+.++.+..      |            -++.+.|..++ 
T Consensus       133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG-  211 (366)
T COG3490         133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATG-  211 (366)
T ss_pred             CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecccc-
Confidence            2     478999999854 556778888888889999999998887642      1            13555565555 


Q ss_pred             CCeeEeccC-----CCceeEEEccCCeEEEEc
Q psy9936         208 GPLNTFRTR-----TPINNLAFSQRGLLATSR  234 (315)
Q Consensus       208 ~~~~~~~~~-----~~v~~~~~s~~g~~~~~~  234 (315)
                      .++......     -.+..+...+||.+..++
T Consensus       212 ~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         212 NLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             chhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            555443332     257888888888655543

>smart00320 WD40 WD40 repeats

Probab=97.87  E-value=7.7e-05  Score=40.44  Aligned_cols=39  Identities=15%  Similarity=0.532  Sum_probs=33.9

Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936         122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus       122 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      +++...+..|...+.++.|+|++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345566777888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649|consensus

Probab=97.81  E-value=0.01  Score=47.12  Aligned_cols=133  Identities=11%  Similarity=0.061  Sum_probs=83.8

Q ss_pred             EEEEEe-CCeEEEEeCCCCEEE-EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC
Q psy9936          65 MFAVAQ-KDWVYIYDNQGIELH-CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        65 ~l~~~~-~~~i~i~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p  142 (315)
                      +++.++ .+.+.-.|.....+. ..--...+.+-+.- -|++++.|+..|.+++.+..+|.....+.....-=......+
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~  103 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF  103 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence            444444 455555565333222 22222333332222 467899999999999999999987777654332212345678


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcE
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQL  198 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i  198 (315)
                      ++..+..|+.|++....|.++..++...+...+.-.+.+..|-...|..+...|.+
T Consensus       104 ~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            99999999999999999999998888877544444455666632233344444433

>KOG2395|consensus

Probab=97.69  E-value=0.001  Score=57.67  Aligned_cols=139  Identities=13%  Similarity=0.145  Sum_probs=96.0

Q ss_pred             CCCEEE-EEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCc--------EEEEEeCCeEEEEeC--CCC-EEEEee
Q psy9936          21 NGRHLL-LGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLET--------MFAVAQKDWVYIYDN--QGI-ELHCLK   88 (315)
Q Consensus        21 ~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~~~i~i~~~--~~~-~~~~~~   88 (315)
                      +.++|+ .+.....++-.|++.|+.+........|+-+.+.|+.+        .|+.-+++.|.-||+  ++. .+....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            334444 34444568888999999999988666688888888643        345556889999997  343 222222


Q ss_pred             -----cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          89 -----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI-VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        89 -----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                           ......|.+-..+| ++++|+.+|.|++||- .+.. ...+.+-..+|..+..+.+|++++..+ +..+.+.++.
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence                 22445566655555 7999999999999996 4443 344677778899999999999876554 5567776643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.64  E-value=0.019  Score=48.93  Aligned_cols=190  Identities=11%  Similarity=0.010  Sum_probs=96.6

Q ss_pred             EccCceEEEEecCCCc-e-----eEEEEeecCcEEEEEe--C--CeEEEEeCCCCEEEEeecC--CceEEEEEcCCCceE
Q psy9936          38 DWVRKTLACEMNVMEE-V-----YDIKWLHLETMFAVAQ--K--DWVYIYDNQGIELHCLKVL--NKVTRMEFLPYHFLL  105 (315)
Q Consensus        38 ~~~~~~~~~~~~~~~~-v-----~~~~~~~~~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l  105 (315)
                      |..+|..+..+..... .     +.=+|.++|+.|+.++  +  ..+++.|+.+.++.++...  .......++|+++.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            5667766666653322 2     2236677887666554  3  4788889998888887654  223346677888877


Q ss_pred             EEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEE--cCCCCEEEEEc----------------------CCCeEEEEcC
Q psy9936         106 ATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQ--NPYNACICLGH----------------------RNGTVTMWSP  161 (315)
Q Consensus       106 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~----------------------~d~~i~i~d~  161 (315)
                      +.......+.-.|+.+.+....+......+-...|  +.++..++-.-                      ....|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            66655678999999998766556555665544555  44565554221                      1145666788


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCCCCCeeEeccCC---CceeEEEccCC
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRG  228 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g  228 (315)
                      .+++.-..+. -..++..+.|||....+++=+..|     .-|||-+++.......+..+.   .+..=-|.|||
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG  249 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG  249 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS
T ss_pred             CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC
Confidence            8876544443 567888999999865554443333     236777664423344333332   24555677777

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.64  E-value=0.027  Score=46.89  Aligned_cols=222  Identities=10%  Similarity=0.100  Sum_probs=112.9

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec----CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN----VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~   88 (315)
                      ..++.|..+ ..+++| ..+ +.+...+.|+.=..+.    .+.....+....++..++.+..|.|+.=.-.+.....+.
T Consensus        64 l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~  140 (302)
T PF14870_consen   64 LNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVV  140 (302)
T ss_dssp             EEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE
T ss_pred             EEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcc
Confidence            567777643 344444 344 4445545554322221    234455566556666666666666655443444433332


Q ss_pred             --cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC-CCCc
Q psy9936          89 --VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP-TVQK  165 (315)
Q Consensus        89 --~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~-~~~~  165 (315)
                        ....+..+.-+++|.+++++..-....-||.-...-...-.....++..|.|+|++.+.+++ ..|.|++=+. ...+
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence              23678888889999988888765556677754322222223346789999999998876655 7888888772 2221


Q ss_pred             c----eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc----CCCceeEEEccCC-eEEEEcCC
Q psy9936         166 P----LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT----RTPINNLAFSQRG-LLATSRGN  236 (315)
Q Consensus       166 ~----~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~g-~~~~~~~~  236 (315)
                      .    +..+....-.+..++|.+++...|+|+.. .+ +.....+ +.-+..+.    +..++.+.|.++. -++.+.+|
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTT-SS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCC-ccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            1    11111122357899999998877766544 33 3444455 54444433    3357889987665 47888888


Q ss_pred             EEEec
Q psy9936         237 IVEFL  241 (315)
Q Consensus       237 ~i~~~  241 (315)
                      .|-.|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77544

>PHA02713 hypothetical protein; Provisional

Probab=97.63  E-value=0.0051  Score=56.23  Aligned_cols=184  Identities=8%  Similarity=0.024  Sum_probs=96.6

Q ss_pred             CCCEEEEEcCC------CeEEEEEccCceEEEEecCCCc-eeEEEEeecCcEEEEEe-C-----CeEEEEeCCCCEEEEe
Q psy9936          21 NGRHLLLGGKR------GHVAAFDWVRKTLACEMNVMEE-VYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGIELHCL   87 (315)
Q Consensus        21 ~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~~~   87 (315)
                      ++..+++|+.+      ..+..||..++.....-....+ .....-.-+|++.+.|+ +     ..+..||........+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            55666677643      3467788777654322221111 11122233677777665 3     3588899876655543


Q ss_pred             ecC-CceE-EEEEcCCCceEEEEcCCC-----------------------eEEEEEccCCeEEEEeccCCCCeEEEEEcC
Q psy9936          88 KVL-NKVT-RMEFLPYHFLLATASEEG-----------------------YLSWLDTSIGKIVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        88 ~~~-~~v~-~~~~~~~~~~l~~~~~d~-----------------------~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p  142 (315)
                      ... .+.. .....-++...+.|+.++                       .+..||..+.+-...-.-.......-...-
T Consensus       383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~  462 (557)
T PHA02713        383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH  462 (557)
T ss_pred             CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE
Confidence            321 1111 111123577777777542                       477788877643321111111111111223


Q ss_pred             CCCEEEEEcCC------CeEEEEcCCC-Cc--ceeEeecccccEEEEEECCCCCEEEEeeCCC--cEEEEEccCC
Q psy9936         143 YNACICLGHRN------GTVTMWSPTV-QK--PLASLLCHKAGIQSVAVNHTGTYMATSAGDS--QLRIWDVRNL  206 (315)
Q Consensus       143 ~~~~l~~~~~d------~~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--~i~iwd~~~~  206 (315)
                      +|++.+.|+.+      ..+..||..+ ++  .+..+.........+.+  +|...++|+.++  ++..||..+.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence            56777777654      2467899887 43  33333322222222232  678888999888  6777777664

>PHA02713 hypothetical protein; Provisional

Probab=97.63  E-value=0.018  Score=52.70  Aligned_cols=212  Identities=8%  Similarity=0.054  Sum_probs=105.0

Q ss_pred             eEEEEEccCceEEEEecCCCce--eEEEEeecCcEEEEEe-C------CeEEEEeCCCCEEEEeecC--CceEEEEEcCC
Q psy9936          33 HVAAFDWVRKTLACEMNVMEEV--YDIKWLHLETMFAVAQ-K------DWVYIYDNQGIELHCLKVL--NKVTRMEFLPY  101 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-~------~~i~i~~~~~~~~~~~~~~--~~v~~~~~~~~  101 (315)
                      .+..||..+++....-..+.+.  .+++ .-++.++++|+ +      ..+..||+.......+...  ..-......-+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            4677888777654322211111  2222 23566666664 2      3578889866654443321  11111222335


Q ss_pred             CceEEEEcCCC-----eEEEEEccCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEcCC---------------------
Q psy9936         102 HFLLATASEEG-----YLSWLDTSIGKIVS--DFSAKKGKLSVMTQNPYNACICLGHRN---------------------  153 (315)
Q Consensus       102 ~~~l~~~~~d~-----~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~~~~~d---------------------  153 (315)
                      |+..+.|+.++     ++..||..+.+-..  .+.........+.  -+|.+.+.||.+                     
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence            77778887654     48889988764332  1211111122222  367777777754                     


Q ss_pred             --CeEEEEcCCCCcc--eeEeecccccEEEEEECCCCCEEEEeeCCC------cEEEEEccC-C-CCCeeEeccCCCcee
Q psy9936         154 --GTVTMWSPTVQKP--LASLLCHKAGIQSVAVNHTGTYMATSAGDS------QLRIWDVRN-L-EGPLNTFRTRTPINN  221 (315)
Q Consensus       154 --~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~------~i~iwd~~~-~-~~~~~~~~~~~~v~~  221 (315)
                        ..+..||..+++.  +..+....... ++ ..-+|+..+.|+.++      .+..||..+ . -..+..++......+
T Consensus       430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence              2577888877643  22222111111 12 223567667776542      467888876 2 122333332222233


Q ss_pred             EEEccCCeEEEEc-CC--EEEecCCCceeec
Q psy9936         222 LAFSQRGLLATSR-GN--IVEFLKPPEINFE  249 (315)
Q Consensus       222 ~~~s~~g~~~~~~-~~--~i~~~~~~~~~~~  249 (315)
                      ++...+-.+++++ ++  ++..++|..-.|+
T Consensus       508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        508 TILHDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             eEEECCEEEEEeeecceeehhhcCccccccc
Confidence            3333333555554 55  5666777555554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.57  E-value=0.042  Score=47.40  Aligned_cols=189  Identities=12%  Similarity=0.082  Sum_probs=91.9

Q ss_pred             CCCEEEEEc-CCCeEEEEEccC----ceEEEEecCC--------CceeEEEEeecCcEEEEEe-------CCeEEEEeCC
Q psy9936          21 NGRHLLLGG-KRGHVAAFDWVR----KTLACEMNVM--------EEVYDIKWLHLETMFAVAQ-------KDWVYIYDNQ   80 (315)
Q Consensus        21 ~~~~l~~~~-~dg~i~v~~~~~----~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~-------~~~i~i~~~~   80 (315)
                      +.++|+..+ ..+.|+|.|+.+    .++...++..        .....+--.|+|.+++++-       .|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777665 667899999873    3444444421        1123333456887777652       2568888887


Q ss_pred             CCEEEE-eec----CCceEEEEEcCCCceEEEEcC--------------------CCeEEEEEccCCeEEEEeccCCC--
Q psy9936          81 GIELHC-LKV----LNKVTRMEFLPYHFLLATASE--------------------EGYLSWLDTSIGKIVSDFSAKKG--  133 (315)
Q Consensus        81 ~~~~~~-~~~----~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~~~d~~~~~~~~~~~~~~~--  133 (315)
                      +.++.. ...    ...-+.+-|.|..+.+++...                    ..++++||+.+.+.++++.....  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            655433 221    134567888898888887642                    34799999999999999875543  


Q ss_pred             CeEEEEEc--CCCCEEEE-EcCCCeEEEEcC-CCCc----ceeEeec-----------------ccccEEEEEECCCCCE
Q psy9936         134 KLSVMTQN--PYNACICL-GHRNGTVTMWSP-TVQK----PLASLLC-----------------HKAGIQSVAVNHTGTY  188 (315)
Q Consensus       134 ~v~~~~~~--p~~~~l~~-~~~d~~i~i~d~-~~~~----~~~~~~~-----------------~~~~i~~~~~sp~g~~  188 (315)
                      .+..+.|.  |+..+=++ +.-.++|..|-- +.++    .+..+..                 -..-|+.|..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            24456654  44443333 333445554433 3332    1222211                 1245789999999999


Q ss_pred             EEEee-CCCcEEEEEccCCCCC
Q psy9936         189 MATSA-GDSQLRIWDVRNLEGP  209 (315)
Q Consensus       189 l~~~~-~d~~i~iwd~~~~~~~  209 (315)
                      |..++ ..|.|+.||+.....+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-
T ss_pred             EEEEcccCCcEEEEecCCCCCC
Confidence            88776 5889999999875333

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395|consensus

Probab=97.52  E-value=0.0025  Score=55.45  Aligned_cols=139  Identities=19%  Similarity=0.285  Sum_probs=95.1

Q ss_pred             CCce-EEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC--E-----EEEEcCCCeEEEEcCCCC-c-ceeEe
Q psy9936         101 YHFL-LATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA--C-----ICLGHRNGTVTMWSPTVQ-K-PLASL  170 (315)
Q Consensus       101 ~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~--~-----l~~~~~d~~i~i~d~~~~-~-~~~~~  170 (315)
                      +.++ |.++.....++-.|+..|+.+.....+.. |+-+.+.|+++  .     =+.|-.+..|.-||.|-. . .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3443 44555566799999999999999887766 77788888764  1     234667888999998843 2 12222


Q ss_pred             eccc----ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-CCCceeEEEccCCe-EEEEcCCEEEecC
Q psy9936         171 LCHK----AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-RTPINNLAFSQRGL-LATSRGNIVEFLK  242 (315)
Q Consensus       171 ~~~~----~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~-~~~~~~~~i~~~~  242 (315)
                      ++|.    ..-.|.+-..+| ++|+||.+|.|++||--.. +.-..+++ ..+|..+..+.||. ++++++..+.+.+
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~-~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~  498 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR-RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID  498 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh-hhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence            2232    234555555555 8999999999999997332 32333443 34799999999995 7888888877554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.47  E-value=0.039  Score=44.58  Aligned_cols=179  Identities=10%  Similarity=0.092  Sum_probs=110.5

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCC--eEEEEEccCceEEEEecCCCcee--EEEEeecCcEEEEE-eCCeEEEEeCCC-CEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRG--HVAAFDWVRKTLACEMNVMEEVY--DIKWLHLETMFAVA-QKDWVYIYDNQG-IEL   84 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~-~~~~i~i~~~~~-~~~   84 (315)
                      .-...+.|..+|.++-+.+..|  .|+.+|+.+++............  .++.. ++++.... .++...+||.++ +.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence            3346777877787777776665  68999999999877665443332  23333 33444444 378999999965 445


Q ss_pred             EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-----CCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-----GKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ..+.....-+.++  .++..|+.+.....++++|..+.+....+....     ..++.+-|- +|.+.|=.=....|...
T Consensus       124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            5565556667776  456677777777789999998877666654322     236667664 66666655566778888


Q ss_pred             cCCCCcceeEeec---------------ccccEEEEEECCCCCEEEEee
Q psy9936         160 SPTVQKPLASLLC---------------HKAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       160 d~~~~~~~~~~~~---------------~~~~i~~~~~sp~g~~l~~~~  193 (315)
                      |..+|+.+..+..               ...-.+.|++.|....|...+
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            9998877665531               023578999998866544443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441|consensus

Probab=97.46  E-value=0.037  Score=50.75  Aligned_cols=226  Identities=15%  Similarity=0.152  Sum_probs=120.0

Q ss_pred             CCCEEEEEcCCC------eEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-C------CeEEEEeCCCCEEE
Q psy9936          21 NGRHLLLGGKRG------HVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-K------DWVYIYDNQGIELH   85 (315)
Q Consensus        21 ~~~~l~~~~~dg------~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~------~~i~i~~~~~~~~~   85 (315)
                      .+..+++|+.++      .+..||..++.......  ....-.+++... +.++++|+ +      .++..||.......
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCcee
Confidence            455777777763      57788888876544433  233344455544 45555554 5      36888888665544


Q ss_pred             EeecC--CceEEEEEcCCCceEEEEcCCCe-----EEEEEccCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEcCCC--
Q psy9936          86 CLKVL--NKVTRMEFLPYHFLLATASEEGY-----LSWLDTSIGKIV--SDFSAKKGKLSVMTQNPYNACICLGHRNG--  154 (315)
Q Consensus        86 ~~~~~--~~v~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--  154 (315)
                      .+..-  .....-...-+|.+.|+|+.||.     +-.||..+.+-.  ..+.........+  .-+|.+.++||.++  
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSS  440 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCc
Confidence            43221  11111111235788888988864     777887765422  2111111112222  23677788887554  


Q ss_pred             ----eEEEEcCCCCcc--eeEeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCCCCCeeEec---cCCCce
Q psy9936         155 ----TVTMWSPTVQKP--LASLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNLEGPLNTFR---TRTPIN  220 (315)
Q Consensus       155 ----~i~i~d~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~---~~~~v~  220 (315)
                          ++..||..+++.  +..+..-..... ++ .-++...+.|+.|+     +|..||..+. + ...+.   ......
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~-~-W~~v~~m~~~rs~~  516 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETN-Q-WTMVAPMTSPRSAV  516 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCC-c-eeEcccCccccccc
Confidence                678899887643  222221111211 22 23577888888776     3777887764 2 22221   111222


Q ss_pred             eEEEccCCeEEEEc-C-----CEEEecCCCceeeccccc
Q psy9936         221 NLAFSQRGLLATSR-G-----NIVEFLKPPEINFEPRRK  253 (315)
Q Consensus       221 ~~~~s~~g~~~~~~-~-----~~i~~~~~~~~~~~~~~~  253 (315)
                      .++...+..+++++ +     +++..|+|..-.|.....
T Consensus       517 g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  517 GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             cEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            23333333566554 3     256678886666765544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.45  E-value=0.11  Score=49.23  Aligned_cols=191  Identities=15%  Similarity=0.141  Sum_probs=113.1

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCCce---------eEEEEee-----------------cCcEEEEEeCCeEE
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEV---------YDIKWLH-----------------LETMFAVAQKDWVY   75 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v---------~~~~~~~-----------------~~~~l~~~~~~~i~   75 (315)
                      +..|++++.++.|.-.|..+|+.+..+.....+         ..+.+..                 ++++++.+.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777788889999999999988877633221         2233321                 23455555688888


Q ss_pred             EEeCC-CCEEEEeecCCce-------------EEEEEcC--CCceEEEEcC----------CCeEEEEEccCCeEEEEec
Q psy9936          76 IYDNQ-GIELHCLKVLNKV-------------TRMEFLP--YHFLLATASE----------EGYLSWLDTSIGKIVSDFS  129 (315)
Q Consensus        76 i~~~~-~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~  129 (315)
                      -.|.. ++....+...+.+             ..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+-.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            88874 5555443322211             0111122  1345666632          6889999999999887654


Q ss_pred             cC---------CCC--------e-EEEEEcCCCCEEEEEc------------------CCCeEEEEcCCCCcceeEeec-
Q psy9936         130 AK---------KGK--------L-SVMTQNPYNACICLGH------------------RNGTVTMWSPTVQKPLASLLC-  172 (315)
Q Consensus       130 ~~---------~~~--------v-~~~~~~p~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~-  172 (315)
                      ..         .+.        + ..++++|...+++.+.                  ..+.|.-.|+++++..-.++. 
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            21         000        1 2345555555444321                  124677778889988777763 


Q ss_pred             -ccc-------cEEEEEECC-CCC---EEEEeeCCCcEEEEEccCCCCCeeEe
Q psy9936         173 -HKA-------GIQSVAVNH-TGT---YMATSAGDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       173 -~~~-------~i~~~~~sp-~g~---~l~~~~~d~~i~iwd~~~~~~~~~~~  213 (315)
                       |..       ...-+.+.. +|+   .++.++.+|.+.++|.+++ +++...
T Consensus       434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~~  485 (764)
T TIGR03074       434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG-EPIVPV  485 (764)
T ss_pred             CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC-CEEeec
Confidence             211       111122322 563   7889999999999999998 766544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.44  E-value=0.0006  Score=39.23  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             EEeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce
Q psy9936           5 FDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT   43 (315)
Q Consensus         5 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~   43 (315)
                      .+-.+...|.+++|+|...+||.++.+|.|.+|.+ +++
T Consensus         6 ~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen    6 GEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            33444778999999999999999999999999998 443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.38  E-value=0.1  Score=47.46  Aligned_cols=186  Identities=16%  Similarity=0.125  Sum_probs=112.1

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCC--ceeE----------EEEeecCcEEEEEeCCeEEEEeCC-CCEEEEee
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVME--EVYD----------IKWLHLETMFAVAQKDWVYIYDNQ-GIELHCLK   88 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~v~~----------~~~~~~~~~l~~~~~~~i~i~~~~-~~~~~~~~   88 (315)
                      +..|++++.++.|+-+|..+|+.+..+....  .+..          +++ .++++++...++.+.-+|.. ++.+....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            3466677778889999999999887765322  1111          111 13555655568999999984 55544432


Q ss_pred             cC--CceEEEEEcC---CCceEEEEc------CCCeEEEEEccCCeEEEEeccCCC------------------------
Q psy9936          89 VL--NKVTRMEFLP---YHFLLATAS------EEGYLSWLDTSIGKIVSDFSAKKG------------------------  133 (315)
Q Consensus        89 ~~--~~v~~~~~~~---~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~------------------------  133 (315)
                      ..  ..-..+.-+|   ++ .++++.      .+|.|..+|..+|+.+-.+..-..                        
T Consensus       148 ~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             cccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            21  1001111122   33 444443      268899999999987766432110                        


Q ss_pred             -------Ce-EEEEEcCCCCEEEEEcCC-----C-----------eEEEEcCCCCcceeEeec--ccc-------cEEEE
Q psy9936         134 -------KL-SVMTQNPYNACICLGHRN-----G-----------TVTMWSPTVQKPLASLLC--HKA-------GIQSV  180 (315)
Q Consensus       134 -------~v-~~~~~~p~~~~l~~~~~d-----~-----------~i~i~d~~~~~~~~~~~~--~~~-------~i~~~  180 (315)
                             .+ ..+++.|...+++.+..+     +           .|.-.|+++|+..-.++.  |..       ...-+
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                   01 124666666666655421     1           677788999988777763  221       11222


Q ss_pred             EECCCCC---EEEEeeCCCcEEEEEccCCCCCe
Q psy9936         181 AVNHTGT---YMATSAGDSQLRIWDVRNLEGPL  210 (315)
Q Consensus       181 ~~sp~g~---~l~~~~~d~~i~iwd~~~~~~~~  210 (315)
                      .+..+|+   .++.+..+|.+++.|..++ +++
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~i  338 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNG-KLL  338 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCC-cee
Confidence            3334666   7889999999999999998 765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.38  E-value=0.042  Score=47.64  Aligned_cols=140  Identities=11%  Similarity=0.032  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCceEEEEc-----------CCC-eEEEEEccC--Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEcCCC
Q psy9936          91 NKVTRMEFLPYHFLLATAS-----------EEG-YLSWLDTSI--GK--IVSDFSAKKGKLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~~d~~~--~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....+.........+++.++| ++ ++....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCe
Confidence            4567788888888766642           223 677776432  32  223343334456889999998 44 444444


Q ss_pred             eEEEEcCCCC-----cc--e-eEeec----ccccEEEEEECCCCCEEEEeeCC-------------------CcEEEEEc
Q psy9936         155 TVTMWSPTVQ-----KP--L-ASLLC----HKAGIQSVAVNHTGTYMATSAGD-------------------SQLRIWDV  203 (315)
Q Consensus       155 ~i~i~d~~~~-----~~--~-~~~~~----~~~~i~~~~~sp~g~~l~~~~~d-------------------~~i~iwd~  203 (315)
                      ..++.|....     +.  + ..+..    +......+.|.|||.+.++-+..                   +.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            4445465421     11  1 11221    12446789999999866544421                   33444444


Q ss_pred             cCCCCCeeEec-cCCCceeEEEccCCeEEEEc
Q psy9936         204 RNLEGPLNTFR-TRTPINNLAFSQRGLLATSR  234 (315)
Q Consensus       204 ~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~  234 (315)
                      .+.  .+..+. .......++|+|+|.+.++.
T Consensus       172 dg~--~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       172 DGG--KLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             CCC--eEEEEecCcCCCccceECCCCCEEEEc
Confidence            443  222322 23346789999998655543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=97.38  E-value=0.023  Score=52.02  Aligned_cols=181  Identities=8%  Similarity=0.041  Sum_probs=90.6

Q ss_pred             CCCEEEEEcCCC------eEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEe-C-----CeEEEEeCCCCEEEEe
Q psy9936          21 NGRHLLLGGKRG------HVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGIELHCL   87 (315)
Q Consensus        21 ~~~~l~~~~~dg------~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~~~   87 (315)
                      ++..++.|+.++      .+..||..+.+....-... .........-++.+++.|+ +     ..+..||.........
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            455666666532      5778888777664332211 1111112233667776665 2     3578888866554443


Q ss_pred             ec---CCceEEEEEcCCCceEEEEcCC------CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC---
Q psy9936          88 KV---LNKVTRMEFLPYHFLLATASEE------GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN---  153 (315)
Q Consensus        88 ~~---~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d---  153 (315)
                      ..   ...-.++ ..-++..++.|+.+      ..+..||+.+.+-...  +....... ++ ...++.+++.||.+   
T Consensus       374 ~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        374 PPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYID  450 (534)
T ss_pred             CCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCC
Confidence            21   1111122 22356677777632      3588899887643322  11111111 12 22356666777643   


Q ss_pred             -----CeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCC-----CcEEEEEccCC
Q psy9936         154 -----GTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGD-----SQLRIWDVRNL  206 (315)
Q Consensus       154 -----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d-----~~i~iwd~~~~  206 (315)
                           ..+.+||..+++...  .+.........+.  .++..++.|+.+     +.+.+||..+.
T Consensus       451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                 238899988764322  1111111111222  266777777654     35778887653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.35  E-value=0.059  Score=43.86  Aligned_cols=188  Identities=10%  Similarity=0.145  Sum_probs=120.7

Q ss_pred             CCceeEEEEeecCcEEEEEeC-C-eEEEEeCCCCEEEEeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE
Q psy9936          51 MEEVYDIKWLHLETMFAVAQK-D-WVYIYDNQGIELHCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS  126 (315)
Q Consensus        51 ~~~v~~~~~~~~~~~l~~~~~-~-~i~i~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  126 (315)
                      ...+.++.|+|+.+.|.+..+ . .|.-.+.+|+.+..++-  ......+.+.-++.+.++--.++.+.++.+.....+.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            345899999999877766654 3 45445668888777653  3566778888888777777778888888776542222


Q ss_pred             E-------ec--cC-CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc-c--eeEeecc-------cccEEEEEECCC-
Q psy9936         127 D-------FS--AK-KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK-P--LASLLCH-------KAGIQSVAVNHT-  185 (315)
Q Consensus       127 ~-------~~--~~-~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~-~--~~~~~~~-------~~~i~~~~~sp~-  185 (315)
                      .       +.  .+ ....-.++|.|....|+.+-+..-+.||...... .  +.....+       -..|.++.|++. 
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence            1       11  12 4457889999999988888777777777655322 1  1111111       135677888875 


Q ss_pred             CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC----------CceeEEEccCC-eEEEEcCCEEEe
Q psy9936         186 GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT----------PINNLAFSQRG-LLATSRGNIVEF  240 (315)
Q Consensus       186 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~s~~g-~~~~~~~~~i~~  240 (315)
                      +.+|+-+..++.+.-.|...  .++..+....          ..-.++..++| +|++|.-+-...
T Consensus       245 ~~LLVLS~ESr~l~Evd~~G--~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlfy~  308 (316)
T COG3204         245 NSLLVLSDESRRLLEVDLSG--EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLFYR  308 (316)
T ss_pred             CcEEEEecCCceEEEEecCC--CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCccee
Confidence            55666677777777777665  3444433211          24678888888 588887655443

>KOG2079|consensus

Probab=97.35  E-value=0.00092  Score=62.63  Aligned_cols=97  Identities=16%  Similarity=0.189  Sum_probs=72.7

Q ss_pred             CCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEE
Q psy9936         101 YHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQS  179 (315)
Q Consensus       101 ~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  179 (315)
                      .+..++.|+..|.+...|+... .+...-....++|++++|+.+|..++.|-.+|.|.+||+..+++++.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3557888998999998887642 112222234578999999999999999999999999999999999888766665544


Q ss_pred             E---EECCCCCEEEEeeCCCc
Q psy9936         180 V---AVNHTGTYMATSAGDSQ  197 (315)
Q Consensus       180 ~---~~sp~g~~l~~~~~d~~  197 (315)
                      +   .+..++..+.++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            4   34455567777777775

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.35  E-value=0.12  Score=47.17  Aligned_cols=74  Identities=18%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc--eeEEEccCCe
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI--NNLAFSQRGL  229 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~g~  229 (315)
                      |.|.-+|+.+++.+...........+. ..-.+.+++.++.+|.++.+|.+++ +++..++....+  .-+.|.-+|+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TG-e~lw~~~~g~~~~a~P~ty~~~G~  516 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTG-EELWKFKTGSGIVGPPVTYEQDGK  516 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCC-CEeEEEeCCCCceecCEEEEeCCE
Confidence            457778888887766554211111111 1124456777888999999999999 888888776643  2344445773

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.34  E-value=0.024  Score=39.14  Aligned_cols=99  Identities=16%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             eeEEEEee---c--CcEEEEEeCCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe
Q psy9936          54 VYDIKWLH---L--ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF  128 (315)
Q Consensus        54 v~~~~~~~---~--~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  128 (315)
                      |+++++..   +  ..+|+.+.|..|++|+-+ ..+..+.....|.++.-... ..|+.+..+|+|-+|+-.  ..+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee
Confidence            56666655   3  245555568999999865 44556677788888887766 568899999999999853  344444


Q ss_pred             ccCCCCeEEEEEc-CCC--C-EEEEEcCCCeEE
Q psy9936         129 SAKKGKLSVMTQN-PYN--A-CICLGHRNGTVT  157 (315)
Q Consensus       129 ~~~~~~v~~~~~~-p~~--~-~l~~~~~d~~i~  157 (315)
                      +... .+.++.+. .++  . -|++|=.+|.|-
T Consensus        78 KSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 KSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4333 35555543 333  2 677887788764

>KOG4441|consensus

Probab=97.29  E-value=0.019  Score=52.63  Aligned_cols=181  Identities=13%  Similarity=0.155  Sum_probs=99.8

Q ss_pred             CCCEEEEEcCC------CeEEEEEccCceEEEEecCCCceeEEEE-eecCcEEEEEe-CC-----eEEEEeCCCCEEEEe
Q psy9936          21 NGRHLLLGGKR------GHVAAFDWVRKTLACEMNVMEEVYDIKW-LHLETMFAVAQ-KD-----WVYIYDNQGIELHCL   87 (315)
Q Consensus        21 ~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~-~~-----~i~i~~~~~~~~~~~   87 (315)
                      ++...++|+.+      .++..||..+++....-.-..+-..+.. .-+|.+.|+|+ +|     ++-.||..+......
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            45677788888      3577888887775543222222122222 22677777765 53     588899877665554


Q ss_pred             ecC-CceEEEE-EcCCCceEEEEcCCC------eEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCCC---
Q psy9936          88 KVL-NKVTRME-FLPYHFLLATASEEG------YLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRNG---  154 (315)
Q Consensus        88 ~~~-~~v~~~~-~~~~~~~l~~~~~d~------~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d~---  154 (315)
                      ... ......+ ..-+|.+.++|+.++      ++..||..+++....  +..-..... ++ .-++.+.+.||.|+   
T Consensus       412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~  489 (571)
T KOG4441|consen  412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSA  489 (571)
T ss_pred             CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCc
Confidence            322 2222222 233577778887554      477888887653322  221111122 22 23567788888776   


Q ss_pred             --eEEEEcCCCCcceeE--eecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccC
Q psy9936         155 --TVTMWSPTVQKPLAS--LLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRN  205 (315)
Q Consensus       155 --~i~i~d~~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~  205 (315)
                        +|..||..+.+....  +......+....  -++...++|+.||     +|..||..+
T Consensus       490 ~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  490 LSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             cceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCC
Confidence              478899887654322  222222222222  2566778888776     466666654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.21  E-value=0.083  Score=42.73  Aligned_cols=186  Identities=12%  Similarity=0.083  Sum_probs=114.6

Q ss_pred             eEEEEecCCCc--eeEEEEeecCcEEEEEe-C--CeEEEEeCCCC-EEEEeecCCc--eEEEEEcCCCceEEEEcCCCeE
Q psy9936          43 TLACEMNVMEE--VYDIKWLHLETMFAVAQ-K--DWVYIYDNQGI-ELHCLKVLNK--VTRMEFLPYHFLLATASEEGYL  114 (315)
Q Consensus        43 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-~--~~i~i~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i  114 (315)
                      +.+..+.|...  ...+.|.+++.++-+++ -  ..|+.+|+.+. ......-...  -..+.... ++...-.-.++..
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~  112 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeE
Confidence            45666776544  56788888888777665 3  47999999654 3333333322  23444443 3344445568899


Q ss_pred             EEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc--c---ccEEEEEECCCCCEE
Q psy9936         115 SWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH--K---AGIQSVAVNHTGTYM  189 (315)
Q Consensus       115 ~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~sp~g~~l  189 (315)
                      .+||..+.+.+.++.-. +.=..++  .|++.|+.......+.++|..+.+....+...  .   ..++-+.|. +|...
T Consensus       113 f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy  188 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY  188 (264)
T ss_dssp             EEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred             EEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence            99999998888887643 3345666  46777777777789999999888777666532  1   245667775 67666


Q ss_pred             EEeeCCCcEEEEEccCCCCCeeEecc------------C---CC-ceeEEEccCC-eEEEEc
Q psy9936         190 ATSAGDSQLRIWDVRNLEGPLNTFRT------------R---TP-INNLAFSQRG-LLATSR  234 (315)
Q Consensus       190 ~~~~~d~~i~iwd~~~~~~~~~~~~~------------~---~~-v~~~~~s~~g-~~~~~~  234 (315)
                      |-.=....|...|..++ .....+..            .   .. .+.|+|+|.+ .+.+++
T Consensus       189 ANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  189 ANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66656667888888888 66655421            1   12 5899998876 566655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.20  E-value=0.089  Score=46.96  Aligned_cols=150  Identities=11%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             CCCceeEEEEeecCcEEE-EE---eCCeEEEEeCCCCEEEEeecCCceEEEEEcCCC----ceEEEEcCCCeEEEEEccC
Q psy9936          50 VMEEVYDIKWLHLETMFA-VA---QKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYH----FLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~-~~---~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~  121 (315)
                      ...++..++|. ||+.++ +.   .+|.+++-|.     ..++....|..+.|.|-+    ..+.+.--...|.+|.+.-
T Consensus        18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-----~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-----KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             hhccccceEec-CCCEEEEEeeeeeCCccccCCc-----cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            34678899997 444433 32   1344433322     345666788999999953    2344444566899998752


Q ss_pred             -----CeEEEEeccC-----CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC-cceeEeecccccEEEEEECCCCCEEE
Q psy9936         122 -----GKIVSDFSAK-----KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ-KPLASLLCHKAGIQSVAVNHTGTYMA  190 (315)
Q Consensus       122 -----~~~~~~~~~~-----~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~  190 (315)
                           ++.+..-..+     .--...+.|+|....|++-.....-.+++++.. ..++.--...+-|.|.+|.+||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                 2222221111     112345789999988876655544455665543 22322223568899999999999887


Q ss_pred             EeeCC-CcEEEEEccC
Q psy9936         191 TSAGD-SQLRIWDVRN  205 (315)
Q Consensus       191 ~~~~d-~~i~iwd~~~  205 (315)
                      ++-.. =.-++||-..
T Consensus       172 VAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEeCCeEEEEEecCch
Confidence            76443 2467888543

>KOG2444|consensus

Probab=97.19  E-value=0.00085  Score=52.01  Aligned_cols=103  Identities=13%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             CceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeE-EEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc-ccEE
Q psy9936         102 HFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLS-VMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK-AGIQ  178 (315)
Q Consensus       102 ~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~  178 (315)
                      +..+++|+.+|.|.+|+.... .....+......+. .+.--.++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            456899999999999987521 11111111122222 22223355678889999999999999887776665565 3444


Q ss_pred             EEEECCCCCEEEEe--eCCCcEEEEEcc
Q psy9936         179 SVAVNHTGTYMATS--AGDSQLRIWDVR  204 (315)
Q Consensus       179 ~~~~sp~g~~l~~~--~~d~~i~iwd~~  204 (315)
                      ....+..+++++.+  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            44444444444444  455555555544

>KOG2079|consensus

Probab=97.14  E-value=0.022  Score=53.90  Aligned_cols=97  Identities=14%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceE--EEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEEeecC----Cc
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTL--ACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHCLKVL----NK   92 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~~~~~----~~   92 (315)
                      .+..++.|+..|.+-..|..+.-.  .+-....++|++++|+.+|.+++.|- +|.|.+||... ..++.+...    ..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            345788888889888888655311  22223567899999999999998885 89999999954 555555432    34


Q ss_pred             eEEEEEcCCCceEEEEcCCCeEEEEEc
Q psy9936          93 VTRMEFLPYHFLLATASEEGYLSWLDT  119 (315)
Q Consensus        93 v~~~~~~~~~~~l~~~~~d~~i~~~d~  119 (315)
                      +..+.+..++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            555566666667888877776  4543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.12  E-value=0.078  Score=45.97  Aligned_cols=139  Identities=10%  Similarity=0.084  Sum_probs=79.4

Q ss_pred             CcEEEEEEcCCCCEEEEEc-----------CCC-eEEEEEccC--ceE--EEEec-CCCceeEEEEeecCcEEEEEeCCe
Q psy9936          11 FGIYRMNYTKNGRHLLLGG-----------KRG-HVAAFDWVR--KTL--ACEMN-VMEEVYDIKWLHLETMFAVAQKDW   73 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~v~~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~   73 (315)
                      ..+..|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+. .......+++.+++ ++++ ....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence            3467899999999877642           123 677775432  332  12222 33456889999998 5554 4444


Q ss_pred             EEEE-eCCC------CEEEEee---c-----CCceEEEEEcCCCceEEEEcCC-------------------CeEEEEEc
Q psy9936          74 VYIY-DNQG------IELHCLK---V-----LNKVTRMEFLPYHFLLATASEE-------------------GYLSWLDT  119 (315)
Q Consensus        74 i~i~-~~~~------~~~~~~~---~-----~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~~~d~  119 (315)
                      |..+ +.++      .....+.   .     ......+.|.|+|.+.++-+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            5544 5432      1111111   1     2346789999999766654421                   44666666


Q ss_pred             cCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC
Q psy9936         120 SIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus       120 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      ..++.. .+...-.-...++|+|+|+++++-..
T Consensus       172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence            544432 22222223568999999998776543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.08  E-value=0.18  Score=44.44  Aligned_cols=187  Identities=7%  Similarity=-0.003  Sum_probs=99.3

Q ss_pred             eEEEEeecCcEEEEEe--CC----eEEEEeCCCCEEEEeecC-CceEEEEEcCCCceEEEEcCC-----------CeEEE
Q psy9936          55 YDIKWLHLETMFAVAQ--KD----WVYIYDNQGIELHCLKVL-NKVTRMEFLPYHFLLATASEE-----------GYLSW  116 (315)
Q Consensus        55 ~~~~~~~~~~~l~~~~--~~----~i~i~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----------~~i~~  116 (315)
                      ....++|+|++++.+-  .|    .++++|+.++....-... .....+.|.+++..|+....+           ..|+.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            3578899999998773  33    699999966544332211 122339999998776655432           23778


Q ss_pred             EEccCCeE--EEEeccCCCC--eEEEEEcCCCCEEEEEc---CC-CeEEEEcCCCC----cceeEeecccccEE-EEEEC
Q psy9936         117 LDTSIGKI--VSDFSAKKGK--LSVMTQNPYNACICLGH---RN-GTVTMWSPTVQ----KPLASLLCHKAGIQ-SVAVN  183 (315)
Q Consensus       117 ~d~~~~~~--~~~~~~~~~~--v~~~~~~p~~~~l~~~~---~d-~~i~i~d~~~~----~~~~~~~~~~~~i~-~~~~s  183 (315)
                      |.+.+...  ...+......  ...+..++|+++|+...   .+ ..+.+.|+..+    .....+......+. .+...
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~  286 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH  286 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence            88776532  2334433332  56788999999876542   23 46888888864    23334433333333 33333


Q ss_pred             CCCCEEEEee---CCCcEEEEEccCCCCC--ee-EeccCC---CceeEEEccCCeEEEEc-CC--EEEecCC
Q psy9936         184 HTGTYMATSA---GDSQLRIWDVRNLEGP--LN-TFRTRT---PINNLAFSQRGLLATSR-GN--IVEFLKP  243 (315)
Q Consensus       184 p~g~~l~~~~---~d~~i~iwd~~~~~~~--~~-~~~~~~---~v~~~~~s~~g~~~~~~-~~--~i~~~~~  243 (315)
                       .+.+++...   ..+.|.-.++... ..  .. .+..+.   .+..+....+.+++... ++  .|+++++
T Consensus       287 -~~~~yi~Tn~~a~~~~l~~~~l~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  287 -GDRLYILTNDDAPNGRLVAVDLADP-SPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             -TTEEEEEE-TT-TT-EEEEEETTST-SGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             -CCEEEEeeCCCCCCcEEEEeccccc-ccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence             444444332   2345666677765 32  12 333333   25555555444444332 22  3445554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02790 Kelch-like protein; Provisional

Probab=97.06  E-value=0.11  Score=46.90  Aligned_cols=177  Identities=6%  Similarity=-0.020  Sum_probs=89.6

Q ss_pred             CCCEEEEEcCCC-----eEEEEEccCceEEEEecCCCc--eeEEEEeecCcEEEEEe-C--CeEEEEeCCCCEEEEeecC
Q psy9936          21 NGRHLLLGGKRG-----HVAAFDWVRKTLACEMNVMEE--VYDIKWLHLETMFAVAQ-K--DWVYIYDNQGIELHCLKVL   90 (315)
Q Consensus        21 ~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-~--~~i~i~~~~~~~~~~~~~~   90 (315)
                      ++..+++|+.++     .+..||..+++....-....+  -.+++ .-++.+.++|+ +  ..+..||............
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            445566776542     466788777665433221111  11222 34677777765 2  4678888765544443322


Q ss_pred             -Cce-EEEEEcCCCceEEEEcCCC---eEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          91 -NKV-TRMEFLPYHFLLATASEEG---YLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        91 -~~v-~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                       .+. ......-+|+..+.|+.++   .+..||..+.+-...  +.........+  .-+|.+.+.|+   .+.+||.++
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCC
Confidence             111 1122233577777777543   477889876654332  11111111122  23566666664   577899887


Q ss_pred             Ccce--eEeecccccEEEEEECCCCCEEEEeeCC-----CcEEEEEccC
Q psy9936         164 QKPL--ASLLCHKAGIQSVAVNHTGTYMATSAGD-----SQLRIWDVRN  205 (315)
Q Consensus       164 ~~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----~~i~iwd~~~  205 (315)
                      ++..  ..+....... +++ .-+|+..+.|+.+     .++..||..+
T Consensus       425 ~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        425 NTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence            6432  2222111222 222 2367777777754     2466666655

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.03  E-value=0.13  Score=41.95  Aligned_cols=143  Identities=13%  Similarity=0.101  Sum_probs=89.3

Q ss_pred             ceeEEEEeecCcEEEEEe--CC--eEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEE-ccCCeEEE-
Q psy9936          53 EVYDIKWLHLETMFAVAQ--KD--WVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLD-TSIGKIVS-  126 (315)
Q Consensus        53 ~v~~~~~~~~~~~l~~~~--~~--~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~-  126 (315)
                      .+.+.++++++..++...  ++  .++++...+.....+ ....+....|++++...+....+....++. ..++.... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            588899999998777655  33  566666544333222 334778889999987766666566666663 33332221 


Q ss_pred             EeccC--CCCeEEEEEcCCCCEEEEEc---CCCeEEEEcCC---CC------cceeEeecccccEEEEEECCCCCEEEEe
Q psy9936         127 DFSAK--KGKLSVMTQNPYNACICLGH---RNGTVTMWSPT---VQ------KPLASLLCHKAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       127 ~~~~~--~~~v~~~~~~p~~~~l~~~~---~d~~i~i~d~~---~~------~~~~~~~~~~~~i~~~~~sp~g~~l~~~  192 (315)
                      .+...  .+.|..+.+||||..++...   .++.|.+--+.   .+      .++.........+..++|.+++.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence            12211  12799999999999776654   35677766432   22      1122222234688999999999877776


Q ss_pred             eCCC
Q psy9936         193 AGDS  196 (315)
Q Consensus       193 ~~d~  196 (315)
                      ...+
T Consensus       184 ~~~~  187 (253)
T PF10647_consen  184 RSAG  187 (253)
T ss_pred             CCCC
Confidence            5544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.03  E-value=0.0029  Score=36.42  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936         132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                      ...|..++|+|...+||.+..+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456899999999999999999999999999 4543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.02  E-value=0.047  Score=49.92  Aligned_cols=110  Identities=12%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee-cccccEEEEEEC--CCCCEEEEeeCCCcEEEEEcc-----C
Q psy9936         134 KLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL-CHKAGIQSVAVN--HTGTYMATSAGDSQLRIWDVR-----N  205 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s--p~g~~l~~~~~d~~i~iwd~~-----~  205 (315)
                      .+.-+.-+.-++..++.+....+.|||.+.+....+-. ...+.|.++.|.  |+|+.+++.+..+.|.+|.-.     +
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444455555555555556689999999876333222 346789999985  788888888889899888542     1


Q ss_pred             C---CCCeeEecc----CCCceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         206 L---EGPLNTFRT----RTPINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       206 ~---~~~~~~~~~----~~~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      .   ..++..+..    ..+|.+..|.++|.++++.++.+.+.+.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence            1   134444432    2369999999999999888888887655

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.98  E-value=0.19  Score=42.84  Aligned_cols=222  Identities=12%  Similarity=0.134  Sum_probs=109.1

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE---EEEec-----CCCceeEEEEeec----CcEEEEEe-C-------
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL---ACEMN-----VMEEVYDIKWLHL----ETMFAVAQ-K-------   71 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~---~~~~~-----~~~~v~~~~~~~~----~~~l~~~~-~-------   71 (315)
                      .++.|+|.|||+++++ ...|.|++++ ..+..   +..+.     .......++++|+    +.+.+... .       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4689999999988776 4599999999 44433   22221     2345789999994    44444333 1       


Q ss_pred             -CeEEEEeCCCC--E------E-EEeec----CCceEEEEEcCCCceEEEEcCCC-------------eEEEEEccCCeE
Q psy9936          72 -DWVYIYDNQGI--E------L-HCLKV----LNKVTRMEFLPYHFLLATASEEG-------------YLSWLDTSIGKI  124 (315)
Q Consensus        72 -~~i~i~~~~~~--~------~-~~~~~----~~~v~~~~~~~~~~~l~~~~~d~-------------~i~~~d~~~~~~  124 (315)
                       ..|.-|..+..  .      + .....    ......|.|.|+|.++++.+..+             .|.-.+.. ++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             23444444221  1      1 11122    24456799999997666655432             23333322 210


Q ss_pred             E-------------EEe-ccCCCCeEEEEEcCC-CCEEEEE-cCCCeEEEEcCCCC------------------------
Q psy9936         125 V-------------SDF-SAKKGKLSVMTQNPY-NACICLG-HRNGTVTMWSPTVQ------------------------  164 (315)
Q Consensus       125 ~-------------~~~-~~~~~~v~~~~~~p~-~~~l~~~-~~d~~i~i~d~~~~------------------------  164 (315)
                      .             ..+ .++. -...++|+|. |+++++- +.+..=.|.-+..+                        
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence            0             000 1111 1467899998 7655442 22322122111111                        


Q ss_pred             -----cceeEeecccccEEEEEECCC-------CCEEEEeeCCCcEEEEEccCCCCCee--Eec-cCC-CceeEEEccCC
Q psy9936         165 -----KPLASLLCHKAGIQSVAVNHT-------GTYMATSAGDSQLRIWDVRNLEGPLN--TFR-TRT-PINNLAFSQRG  228 (315)
Q Consensus       165 -----~~~~~~~~~~~~i~~~~~sp~-------g~~l~~~~~d~~i~iwd~~~~~~~~~--~~~-~~~-~v~~~~~s~~g  228 (315)
                           .++..+. +...+..+.|-+.       |.++++.-..+.|....+........  .+. ... .+.++++.|||
T Consensus       239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG  317 (331)
T PF07995_consen  239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG  317 (331)
T ss_dssp             -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred             CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence                 1233333 3345666776533       44566555566788777764412111  111 122 58999999999


Q ss_pred             e-EEEEc-CCEE
Q psy9936         229 L-LATSR-GNIV  238 (315)
Q Consensus       229 ~-~~~~~-~~~i  238 (315)
                      . ++++. +|.|
T Consensus       318 ~Lyv~~d~~G~i  329 (331)
T PF07995_consen  318 ALYVSDDSDGKI  329 (331)
T ss_dssp             EEEEEE-TTTTE
T ss_pred             eEEEEECCCCeE
Confidence            5 44433 4544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499|consensus

Probab=96.87  E-value=0.16  Score=40.09  Aligned_cols=202  Identities=11%  Similarity=0.021  Sum_probs=108.8

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecC--cEEEEEeC--CeEEEEeCCCCEEEEe---------ecC
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLE--TMFAVAQK--DWVYIYDNQGIELHCL---------KVL   90 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~--~~i~i~~~~~~~~~~~---------~~~   90 (315)
                      ++.+--..|.|.-||..+.+....--...++.++.+--.+  +.++++..  -.|--||-........         ...
T Consensus        29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kk  108 (310)
T KOG4499|consen   29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKK  108 (310)
T ss_pred             EEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHh
Confidence            4444444566767887765543322111122333332111  33444332  2344466322211111         112


Q ss_pred             CceEEEEEcCCCceEEEEcCC---------CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EcCCCeEEEEc
Q psy9936          91 NKVTRMEFLPYHFLLATASEE---------GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL-GHRNGTVTMWS  160 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~~i~i~d  160 (315)
                      ...+.-..+|+|++++-...|         |.++.|-..  -.+..+...-+--+.++|+.+.+.++. -+.+-+|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            456667789999885432222         334444332  112222222233467889888776654 45567787777


Q ss_pred             --CCCCc-----ceeEeec---cc-ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC
Q psy9936         161 --PTVQK-----PLASLLC---HK-AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       161 --~~~~~-----~~~~~~~---~~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                        ..+|.     .+..++.   .. -..-.++..-+|++.+++-..++|...|..++ +.+.++..+. .+++++|-.-.
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGkn  265 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGKN  265 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCCC
Confidence              44442     2222221   01 11234555667888888888889999999999 9999988877 59999997653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.86  E-value=0.054  Score=48.22  Aligned_cols=145  Identities=14%  Similarity=0.157  Sum_probs=87.4

Q ss_pred             CceEEEEEcCCCceE-EEEc--CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC----CEEEEEcCCCeEEEEcCC-
Q psy9936          91 NKVTRMEFLPYHFLL-ATAS--EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN----ACICLGHRNGTVTMWSPT-  162 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l-~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~d~~i~i~d~~-  162 (315)
                      .++..++|. ||+.+ .+.-  .+|.+++=|   .+.+..|    ..|..+.|.|-+    ..|+..-....|.||.+- 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            577888887 44443 3321  233333322   2234333    348899999853    245555667899999865 


Q ss_pred             ----CCcceeEeeccc-----ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC-CeeEeccCCCceeEEEccCC-eEE
Q psy9936         163 ----VQKPLASLLCHK-----AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG-PLNTFRTRTPINNLAFSQRG-LLA  231 (315)
Q Consensus       163 ----~~~~~~~~~~~~-----~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g-~~~  231 (315)
                          .++.+..-..+-     --.....|+|....|++-.....-.+++++.... ....+...+-|.+.+|.+|| +++
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence                233333222111     1124568999999888776655555677764422 33345566679999999999 566


Q ss_pred             EEcCCEEE--ecCC
Q psy9936         232 TSRGNIVE--FLKP  243 (315)
Q Consensus       232 ~~~~~~i~--~~~~  243 (315)
                      ++-++.++  +|+-
T Consensus       172 VAvGSsLHSyiWd~  185 (671)
T PF15390_consen  172 VAVGSSLHSYIWDS  185 (671)
T ss_pred             EEeCCeEEEEEecC
Confidence            66666766  7765

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.84  E-value=0.15  Score=48.00  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCceEEEEcCCCeEEEEEc
Q psy9936          91 NKVTRMEFLPYHFLLATASEEGYLSWLDT  119 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  119 (315)
                      -.|..+.++|+|.+++..|..| |.|..+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            3578888999999888888755 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13684 Ycf48-like protein; Provisional

Probab=96.74  E-value=0.31  Score=41.67  Aligned_cols=221  Identities=14%  Similarity=0.121  Sum_probs=107.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe--c---CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM--N---VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~   84 (315)
                      ...++++.|..+..-+++|. +|.|.. ..+.|+.=...  .   ....+.++.|.++ ..++++..+.|..-+-.+...
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G~~g~i~~S~DgG~tW  121 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIVGQPSLLLHTTDGGKNW  121 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEeCCCceEEEECCCCCCC
Confidence            56789999986666677665 453322 22333211111  1   1234677777644 345555555544432223222


Q ss_pred             EEee----cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEEcCCCeEEE-
Q psy9936          85 HCLK----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF-SAKKGKLSVMTQNPYNACICLGHRNGTVTM-  158 (315)
Q Consensus        85 ~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i-  158 (315)
                      ..+.    .......+.....+..++ ++..|.|..= .+.|+.=..+ ....+.+..+.+.|++.+++++. .|.+.. 
T Consensus       122 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s  198 (334)
T PRK13684        122 TRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFYST  198 (334)
T ss_pred             eEccCCcCCCCCceEEEEECCCccee-eeccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEEEE
Confidence            2221    111112222222222233 3334433221 1223222221 12245688899999987776654 454443 


Q ss_pred             EcCCCCcceeEe-ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-----CCceeEEEccCCe-EE
Q psy9936         159 WSPTVQKPLASL-LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-----TPINNLAFSQRGL-LA  231 (315)
Q Consensus       159 ~d~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~g~-~~  231 (315)
                      +|-. ++.-... ..-...++++.+.|+++.++++ ..|.+.+=....+ ........+     ..+.++.+.|++. ++
T Consensus       199 ~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~  275 (334)
T PRK13684        199 WEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEIWA  275 (334)
T ss_pred             cCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC-CccccccCCccccccceeeEEEcCCCCEEE
Confidence            2322 2212222 2234678899999999877665 4566543223333 222222211     2478889998874 66


Q ss_pred             EEcCCEEE
Q psy9936         232 TSRGNIVE  239 (315)
Q Consensus       232 ~~~~~~i~  239 (315)
                      ++.+|.+.
T Consensus       276 ~G~~G~v~  283 (334)
T PRK13684        276 GGGNGTLL  283 (334)
T ss_pred             EcCCCeEE
Confidence            66677655

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.72  E-value=0.071  Score=46.71  Aligned_cols=141  Identities=14%  Similarity=0.182  Sum_probs=93.0

Q ss_pred             CCCCEEEE-EcCCCeEEEEEccCceEEEEecCCCceeEEEEeec--------CcEEEEEeCCeEEEEeC--CCCEEEEee
Q psy9936          20 KNGRHLLL-GGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL--------ETMFAVAQKDWVYIYDN--QGIELHCLK   88 (315)
Q Consensus        20 ~~~~~l~~-~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~l~~~~~~~i~i~~~--~~~~~~~~~   88 (315)
                      .|..+|.. |+....++-.|++.|+.+..+.....+ -+.|.|.        .+.|+.-++..|.-.|.  .+..+....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            34444443 444456777888999988888755555 6778774        34566667777777776  565555444


Q ss_pred             cCCceEEEEEcC----CCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          89 VLNKVTRMEFLP----YHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        89 ~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      ....++.-.|+.    .+.++|+++..|-|++||--.-.....+.+-...|..+..+.+|+++++.+. ..+.+.|++
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            444444333433    2458999999999999995533333445666677888999999997766553 467777764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.70  E-value=0.14  Score=46.87  Aligned_cols=111  Identities=16%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEEEc--CCCCEEEEEcCCCeEEEEcCC-----
Q psy9936          91 NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMTQN--PYNACICLGHRNGTVTMWSPT-----  162 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~l~~~~~d~~i~i~d~~-----  162 (315)
                      ..+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|.  |+|+.+++.|-.+.|.+|--.     
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344445555555555555556679999999886544322 345678889875  688888888888889888531     


Q ss_pred             ----CCcceeEee--ccc-ccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         163 ----VQKPLASLL--CHK-AGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       163 ----~~~~~~~~~--~~~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                          +..++..+.  .|+ .+|.+..|.++|.+++.++  +.+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                123344432  344 5788999999997655443  35778764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.61  E-value=0.19  Score=42.87  Aligned_cols=103  Identities=11%  Similarity=0.110  Sum_probs=57.2

Q ss_pred             ceeEEEEeecCcEEEEEeCCeEEEEeCCCCE---EEEee-----cCCceEEEEEcCC---CceEEEEcC-C--------C
Q psy9936          53 EVYDIKWLHLETMFAVAQKDWVYIYDNQGIE---LHCLK-----VLNKVTRMEFLPY---HFLLATASE-E--------G  112 (315)
Q Consensus        53 ~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~---~~~~~-----~~~~v~~~~~~~~---~~~l~~~~~-d--------~  112 (315)
                      ....|+|.|||+++++-..|.|++++.++..   +..+.     .......++++|+   ..+|++... .        .
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            3578999999999998889999999955443   11221     1256789999995   233333322 1        2


Q ss_pred             eEEEEEccCC-------eEE-EEecc---CCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936         113 YLSWLDTSIG-------KIV-SDFSA---KKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus       113 ~i~~~d~~~~-------~~~-~~~~~---~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                      .|.-|.+..+       +.+ ..+..   ....-..|.|.|||.++++.+..+.
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence            3444444333       111 11121   2233566899999976666655443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3630|consensus

Probab=96.61  E-value=0.039  Score=52.69  Aligned_cols=141  Identities=6%  Similarity=-0.095  Sum_probs=89.5

Q ss_pred             CceEEEEEcCCCceEEEE--cCCCeEEEEEccCCeE-----EEEeccC------CCCeEEEEEcCCCC-EEEEEcCCCeE
Q psy9936          91 NKVTRMEFLPYHFLLATA--SEEGYLSWLDTSIGKI-----VSDFSAK------KGKLSVMTQNPYNA-CICLGHRNGTV  156 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~~-----~~~~~~~------~~~v~~~~~~p~~~-~l~~~~~d~~i  156 (315)
                      .++..+...+|+...++.  +.+-.|..||+++-..     ...+..|      ..-..++.|+|.-. ..+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456667777776544443  3444689999875321     1112211      22356778988654 45566778899


Q ss_pred             EEEcCCCCcc-eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-----CCCceeEEEccCCeE
Q psy9936         157 TMWSPTVQKP-LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-----RTPINNLAFSQRGLL  230 (315)
Q Consensus       157 ~i~d~~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~  230 (315)
                      ++..+.-... +..+. .....++++|+|.|+.++.|-..|++.-|...-  +....+..     ...|.+++|-.+..+
T Consensus       181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l--eik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL--EIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc--ceeecccCCCcCCCcceeEEEEecceeE
Confidence            8887764322 23333 456789999999999999999999998886543  22222221     235899999887755


Q ss_pred             EEEc
Q psy9936         231 ATSR  234 (315)
Q Consensus       231 ~~~~  234 (315)
                      ++..
T Consensus       258 lvvy  261 (1405)
T KOG3630|consen  258 LVVY  261 (1405)
T ss_pred             EEEe
Confidence            5543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.58  E-value=0.31  Score=39.77  Aligned_cols=141  Identities=10%  Similarity=0.010  Sum_probs=86.0

Q ss_pred             cEEEEEEcCCCCEEEEEc---CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEe--CCCCE-E
Q psy9936          12 GIYRMNYTKNGRHLLLGG---KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYD--NQGIE-L   84 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~---~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~--~~~~~-~   84 (315)
                      .+.+.++|++|+.+|...   ....++++.....  .........+....|.+++.+.+... +....++.  ..+.. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            678999999999877655   3345666654322  22222334678889999988777665 44445552  22221 1


Q ss_pred             EEeec--CC-ceEEEEEcCCCceEEEEc---CCCeEEEEEcc---CC------eEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          85 HCLKV--LN-KVTRMEFLPYHFLLATAS---EEGYLSWLDTS---IG------KIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        85 ~~~~~--~~-~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~---~~------~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      ..+..  .. .|..+.+||||..++...   .++.|.+--+.   .+      ............+..+.|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            11221  12 899999999998777655   35677776543   22      111222223457899999999987776


Q ss_pred             EcCCC
Q psy9936         150 GHRNG  154 (315)
Q Consensus       150 ~~~d~  154 (315)
                      +...+
T Consensus       183 ~~~~~  187 (253)
T PF10647_consen  183 GRSAG  187 (253)
T ss_pred             eCCCC
Confidence            65433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916|consensus

Probab=96.57  E-value=0.0033  Score=58.09  Aligned_cols=137  Identities=15%  Similarity=0.201  Sum_probs=82.7

Q ss_pred             CeEEEEeC---CCCEEEE-----ee-cCCceEEEEEcC---CCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEE
Q psy9936          72 DWVYIYDN---QGIELHC-----LK-VLNKVTRMEFLP---YHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMT  139 (315)
Q Consensus        72 ~~i~i~~~---~~~~~~~-----~~-~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~  139 (315)
                      |.+.+|++   +|+....     .. ...++.-+.|.|   +..++.++-.++.+++.+...... ..+.+|..++..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            67888886   3432111     11 124455666665   455677777788888877654322 33455666554433


Q ss_pred             -----------EcCCCCEEEEEcCCCeEEEEcCC-----CCcceeEeecccc-cEEEEEECCC-------CC--EEEEee
Q psy9936         140 -----------QNPYNACICLGHRNGTVTMWSPT-----VQKPLASLLCHKA-GIQSVAVNHT-------GT--YMATSA  193 (315)
Q Consensus       140 -----------~~p~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~-~i~~~~~sp~-------g~--~l~~~~  193 (315)
                                 .+|||..|+.+..||.+++|.+.     ...++..++.|.+ +-.|.-++..       +.  ++++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt  311 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT  311 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence                       69999999999999998888753     3456667777763 3333333322       22  344554


Q ss_pred             C-CCcEEEEEccCCCCCe
Q psy9936         194 G-DSQLRIWDVRNLEGPL  210 (315)
Q Consensus       194 ~-d~~i~iwd~~~~~~~~  210 (315)
                      . +..+++|..... +|+
T Consensus       312 d~nre~k~w~~a~w-~Cl  328 (1283)
T KOG1916|consen  312 DVNREEKFWAEAPW-QCL  328 (1283)
T ss_pred             cCCcceeEeeccch-hhh
Confidence            4 445899987776 555

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.52  E-value=0.18  Score=36.15  Aligned_cols=109  Identities=11%  Similarity=0.039  Sum_probs=72.0

Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEccCc--------eEEEEecCCCceeEEEEee-----cCcEEEEEeCCeEEEEeCCC
Q psy9936          15 RMNYTKNGRHLLLGGKRGHVAAFDWVRK--------TLACEMNVMEEVYDIKWLH-----LETMFAVAQKDWVYIYDNQG   81 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~i~~~~~   81 (315)
                      .-.|......|++++..|.|.|++....        ..+..++....|++++-.+     +...|+.|+...+..||+..
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~   82 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN   82 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence            3456666778888889999999986532        3456677777888886544     35789999999999999954


Q ss_pred             -CEEEEeecCCceEEEEEcCC---CceEEEEcCCCeEEEEEccCCe
Q psy9936          82 -IELHCLKVLNKVTRMEFLPY---HFLLATASEEGYLSWLDTSIGK  123 (315)
Q Consensus        82 -~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~  123 (315)
                       ..+....-...|.++.+-.-   ..-++..+.+..|.-||..-.+
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence             33333334467777766331   2234444445567777755333

>PRK13684 Ycf48-like protein; Provisional

Probab=96.51  E-value=0.45  Score=40.68  Aligned_cols=175  Identities=13%  Similarity=0.084  Sum_probs=96.1

Q ss_pred             CcEEEEEeCCeEEEEeCCCCEEEEeec--CCceEEEEEcCCCceEEEEcCCCeEEEE-EccCCeEEEE-eccCCCCeEEE
Q psy9936          63 ETMFAVAQKDWVYIYDNQGIELHCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWL-DTSIGKIVSD-FSAKKGKLSVM  138 (315)
Q Consensus        63 ~~~l~~~~~~~i~i~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~~~-~~~~~~~v~~~  138 (315)
                      +..++++..|.|..-+-.++....+..  ...+..+.+.|++.+++++ ..|.+..- | ..++.-.. .......++++
T Consensus       143 ~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i  220 (334)
T PRK13684        143 GTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSM  220 (334)
T ss_pred             CcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceee
Confidence            344555555655444333444333322  3568889999988666554 45554432 2 22222222 22334568899


Q ss_pred             EEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec----ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         139 TQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC----HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       139 ~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      .+.|+++.++++ ..|.+.+=..+.+..-.....    ....+..+.+.|++..+++ +.+|.+. .....+ +......
T Consensus       221 ~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G-~tW~~~~  296 (334)
T PRK13684        221 GFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGG-KTWEKDP  296 (334)
T ss_pred             eEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCC-CCCeECC
Confidence            999999877665 457665433343432221111    1235778999998876554 4566554 344443 3333332


Q ss_pred             c----CCCceeEEEccCC-eEEEEcCCEEEecCC
Q psy9936         215 T----RTPINNLAFSQRG-LLATSRGNIVEFLKP  243 (315)
Q Consensus       215 ~----~~~v~~~~~s~~g-~~~~~~~~~i~~~~~  243 (315)
                      .    ....+.+.|..++ .++++..|.|-.+++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        297 VGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             cCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence            1    1246777777655 567777788877653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.40  E-value=0.42  Score=45.07  Aligned_cols=93  Identities=19%  Similarity=0.243  Sum_probs=55.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc-eEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK-TLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~   87 (315)
                      ...|..+.++|+|.++|..|..| |.|..+... -....+. ....+.|-.+.-+..++.                   -
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-------------------~  143 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-------------------S  143 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc-------------------C
Confidence            56789999999999999888766 555555321 0011121 122233322221222111                   1


Q ss_pred             ecCCceEEEEEcCC---CceEEEEcCCCeEEEEEccCC
Q psy9936          88 KVLNKVTRMEFLPY---HFLLATASEEGYLSWLDTSIG  122 (315)
Q Consensus        88 ~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~  122 (315)
                      .....|..+.|+|.   +..|++-..|+++++||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            12245778889886   478888888999999998653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.36  E-value=0.42  Score=38.72  Aligned_cols=234  Identities=13%  Similarity=0.105  Sum_probs=149.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-cCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-NVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~   88 (315)
                      ......++-+|||..-.++...|.|--.|..+|+....- ........+..-|||..-++-....|.-.|.++.+...+.
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~  140 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEee
Confidence            456678888999988888888888888888888865543 3444566777788877666554445666666554444433


Q ss_pred             c-----CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          89 V-----LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK-KGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        89 ~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      .     ........|.+.|++-+++.. |.---.|..+ ..+..+... ....+.|+..|+|..-++.-.+..|-..|..
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence            2     256778889999987777652 2111122211 122333322 2346778999999988887777788888877


Q ss_pred             CCcceeEee---cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCeEEE--Ec
Q psy9936         163 VQKPLASLL---CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGLLAT--SR  234 (315)
Q Consensus       163 ~~~~~~~~~---~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~--~~  234 (315)
                      ++.. ..+.   ........+--+|.|..-++....+.+..+|-.+.  .-.+++...   ...++..+..|++-.  ..
T Consensus       219 ~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~--sW~eypLPgs~arpys~rVD~~grVW~sea~  295 (353)
T COG4257         219 AGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT--SWIEYPLPGSKARPYSMRVDRHGRVWLSEAD  295 (353)
T ss_pred             cCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc--cceeeeCCCCCCCcceeeeccCCcEEeeccc
Confidence            6632 2222   21233445556788888888888888999988774  355555433   356777777776433  34


Q ss_pred             CCEEEecCCCceee
Q psy9936         235 GNIVEFLKPPEINF  248 (315)
Q Consensus       235 ~~~i~~~~~~~~~~  248 (315)
                      .+.|..++|....|
T Consensus       296 agai~rfdpeta~f  309 (353)
T COG4257         296 AGAIGRFDPETARF  309 (353)
T ss_pred             cCceeecCcccceE
Confidence            67777778755555

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.34  E-value=0.65  Score=40.71  Aligned_cols=139  Identities=13%  Similarity=0.157  Sum_probs=92.1

Q ss_pred             CCEEEEEcCCCeEEEEEccCce-----EEEEecCCCceeEEEEee-----cCcEEEEEeCCeEEEEeC---CCC------
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKT-----LACEMNVMEEVYDIKWLH-----LETMFAVAQKDWVYIYDN---QGI------   82 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~i~~~---~~~------   82 (315)
                      ...|++|+..|.++||+...+.     ++...+...+|..+..-.     +...||+-.-..+.+|.+   .+.      
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            3589999999999999875433     344455667888886542     345777777888888886   221      


Q ss_pred             -EEEE-eecC--CceEEEEEcCC-----CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          83 -ELHC-LKVL--NKVTRMEFLPY-----HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        83 -~~~~-~~~~--~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                       .+.. ..|.  .....+.+-|-     ..++.+-+.||.+.+|+-+.-...+.+.. .--...+++.|.-+.|++++.+
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence             1111 2233  34444555442     35788889999999999664333333332 2223447788888899999999


Q ss_pred             CeEEEEcC
Q psy9936         154 GTVTMWSP  161 (315)
Q Consensus       154 ~~i~i~d~  161 (315)
                      ..+.-|..
T Consensus       196 ~~l~~Yky  203 (418)
T PF14727_consen  196 WTLECYKY  203 (418)
T ss_pred             eeEEEecH
Confidence            89998874

>PRK10115 protease 2; Provisional

Probab=96.32  E-value=1  Score=42.66  Aligned_cols=107  Identities=6%  Similarity=0.004  Sum_probs=65.6

Q ss_pred             ceeEEEEeecCcEEEEEeC--C----eEEEEeCCCCEE--EEeecCCceEEEEEcCCCceEEEEcCC------CeEEEEE
Q psy9936          53 EVYDIKWLHLETMFAVAQK--D----WVYIYDNQGIEL--HCLKVLNKVTRMEFLPYHFLLATASEE------GYLSWLD  118 (315)
Q Consensus        53 ~v~~~~~~~~~~~l~~~~~--~----~i~i~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d  118 (315)
                      .+..+.|+||+++|+.+.|  |    .|++.|+.+...  ..+....  ..++|++|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            3667889999999998863  2    688888854431  1122111  569999998766655432      3578888


Q ss_pred             ccCC--eEEEEeccCCCCeE-EEEEcCCCCEEEEEc---CCCeEEEEcC
Q psy9936         119 TSIG--KIVSDFSAKKGKLS-VMTQNPYNACICLGH---RNGTVTMWSP  161 (315)
Q Consensus       119 ~~~~--~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~---~d~~i~i~d~  161 (315)
                      +.++  +....+........ .+..+.++++++..+   .++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8877  33333443333333 233344788665443   3457888885

>KOG2444|consensus

Probab=96.25  E-value=0.019  Score=44.79  Aligned_cols=100  Identities=6%  Similarity=0.046  Sum_probs=57.8

Q ss_pred             CcEEEEEeCCeEEEEeCCCCEE--EEee-cCCceEE-EEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-CCeEE
Q psy9936          63 ETMFAVAQKDWVYIYDNQGIEL--HCLK-VLNKVTR-MEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-GKLSV  137 (315)
Q Consensus        63 ~~~l~~~~~~~i~i~~~~~~~~--~~~~-~~~~v~~-~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~  137 (315)
                      ..+++.+++|.|++|+....-.  .... ....+.+ +.-..++.+..+++.+|.|+.|++.-++.+.....|. .++..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~  150 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE  150 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence            3445555699999998752211  1111 1123322 2223345688899999999999998777776665565 33444


Q ss_pred             EEEcCCCCEEEEE--cCCCeEEEEcCC
Q psy9936         138 MTQNPYNACICLG--HRNGTVTMWSPT  162 (315)
Q Consensus       138 ~~~~p~~~~l~~~--~~d~~i~i~d~~  162 (315)
                      ...+..++.++++  +.|..++.|++.
T Consensus       151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  151 LIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eEEecCCceEEeeccccchhhhhcchh
Confidence            4444444445444  555555555554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.20  E-value=0.57  Score=38.66  Aligned_cols=211  Identities=12%  Similarity=0.105  Sum_probs=122.6

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEcc-------CceEEEEec------CCCceeEEEEeecC-------------cEE
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWV-------RKTLACEMN------VMEEVYDIKWLHLE-------------TMF   66 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~-------~~~~~~~~~------~~~~v~~~~~~~~~-------------~~l   66 (315)
                      ...|+++|.+.+-++....+...+||..       ...++..+.      .....+.+.|+...             .+|
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3689999999888887778899999986       112233333      12356777777432             245


Q ss_pred             EEEeCCeEEEEeCCC------CEEEEeec--CCceE-EEEEcC--CCceEEEEc-CCCeEEEEEccCCeEEEE---eccC
Q psy9936          67 AVAQKDWVYIYDNQG------IELHCLKV--LNKVT-RMEFLP--YHFLLATAS-EEGYLSWLDTSIGKIVSD---FSAK  131 (315)
Q Consensus        67 ~~~~~~~i~i~~~~~------~~~~~~~~--~~~v~-~~~~~~--~~~~l~~~~-~d~~i~~~d~~~~~~~~~---~~~~  131 (315)
                      .++.+|+|.-|...-      .....+..  ...|+ .+++..  .+.+|+.+. ..++|.+||-. -.++..   +...
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~DP  183 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFIDP  183 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccCC
Confidence            566689999998521      11122221  13332 345443  345565553 57889999843 222211   1100


Q ss_pred             -----CCC-----------eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee--cccccEEEEEECCC------CC
Q psy9936         132 -----KGK-----------LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL--CHKAGIQSVAVNHT------GT  187 (315)
Q Consensus       132 -----~~~-----------v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~sp~------g~  187 (315)
                           -.+           |+-..-.++++.=+.|..-|.|-+||+. ++.++.+.  +.-...+.|+..|.      |.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence                 011           1111112222222233345789999987 66777774  23345678888763      56


Q ss_pred             EEEEeeCCCcEEEEEccCCCCCeeEeccCC-------CceeEEEcc
Q psy9936         188 YMATSAGDSQLRIWDVRNLEGPLNTFRTRT-------PINNLAFSQ  226 (315)
Q Consensus       188 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~  226 (315)
                      +|+-.-.||+|..||..++ ..+..+....       +++.|+|-.
T Consensus       263 lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eEEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence            7776667999999999888 6666655432       357888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.15  E-value=0.82  Score=40.04  Aligned_cols=42  Identities=12%  Similarity=0.119  Sum_probs=35.0

Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         175 AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       175 ~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                      ..+.+++.+|++++.|+...=|.|.++|+.++ ..++.+++-.
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYR  349 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYR  349 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCc
Confidence            45788999999999999878889999999998 7777776543

>KOG3630|consensus

Probab=96.15  E-value=0.04  Score=52.64  Aligned_cols=142  Identities=11%  Similarity=0.045  Sum_probs=91.1

Q ss_pred             eeCCCcEEEEEEcCCCCEEEE--EcCCCeEEEEEccCceEEE--------E----ecCCCceeEEEEeec--CcEEEEEe
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLL--GGKRGHVAAFDWVRKTLAC--------E----MNVMEEVYDIKWLHL--ETMFAVAQ   70 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~v~~~~~~~~~~--------~----~~~~~~v~~~~~~~~--~~~l~~~~   70 (315)
                      +....++..+...+|+...++  .+.+-.|..||+.+-....        .    +....-..++.|+|.  -..+++..
T Consensus        97 v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~  176 (1405)
T KOG3630|consen   97 VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS  176 (1405)
T ss_pred             eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc
Confidence            333667777888888765443  3344478889986433211        1    111233567889885  34455566


Q ss_pred             CCeEEEEeCCC--CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc----CCCCeEEEEEcCCC
Q psy9936          71 KDWVYIYDNQG--IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA----KKGKLSVMTQNPYN  144 (315)
Q Consensus        71 ~~~i~i~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~~p~~  144 (315)
                      |+.|.+..+.-  .....+......++++|+|.|+.+++|-..|++.-|-.. ++....+..    ....|.+++|-...
T Consensus       177 dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             ccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence            88888887632  222334455778999999999999999999999888754 333333322    13678999997666


Q ss_pred             CEEEE
Q psy9936         145 ACICL  149 (315)
Q Consensus       145 ~~l~~  149 (315)
                      .++++
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            55543

>KOG2247|consensus

Probab=96.15  E-value=0.00053  Score=58.94  Aligned_cols=145  Identities=12%  Similarity=0.151  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEeecC-
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCLKVL-   90 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~-   90 (315)
                      ....|-|.+.-++.++.+..+..|| +.++.......++...+++|.-++..+++..  .+.+++|++.......+... 
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            4556888887788888888888898 5566666666777788889988877666543  68999999965433333221 


Q ss_pred             -CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          91 -NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        91 -~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                       ..-.-+.|++.+..++.+...|.+.+++..+.+.+...-.|..+++++++.+.+. .+.++.|..+.+-.
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTT  186 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhh
Confidence             2222378999999999999999999999887766655555888999999998764 45555565554433

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.01  E-value=1.1  Score=40.36  Aligned_cols=141  Identities=16%  Similarity=0.096  Sum_probs=74.1

Q ss_pred             CCCeEEEEEccCceEEEEecCCC-ceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecCCc----eEEEEEcCCCce
Q psy9936          30 KRGHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNK----VTRMEFLPYHFL  104 (315)
Q Consensus        30 ~dg~i~v~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~----v~~~~~~~~~~~  104 (315)
                      ..+...++|. .|..+..+.... ....+...++|.+++... ..+..+|..|+.+........    -..+...|+|++
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~  203 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNL  203 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-E
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCE
Confidence            3456777773 455555554222 111266778998887655 888999998887666544332    356778889988


Q ss_pred             EEEEcC-------------CCeEEEEEccCCeEEEEec--cCC-------------------------CCeEEEEEcC-C
Q psy9936         105 LATASE-------------EGYLSWLDTSIGKIVSDFS--AKK-------------------------GKLSVMTQNP-Y  143 (315)
Q Consensus       105 l~~~~~-------------d~~i~~~d~~~~~~~~~~~--~~~-------------------------~~v~~~~~~p-~  143 (315)
                      |+.+..             .-.|..+| .+|+.+..+.  .|-                         -.++++.+.| +
T Consensus       204 L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d  282 (477)
T PF05935_consen  204 LILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD  282 (477)
T ss_dssp             EEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT
T ss_pred             EEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC
Confidence            887761             11355566 6666555431  110                         1278899998 5


Q ss_pred             CCEEEEEcCCCeEEEEcCCCCcceeEeecc
Q psy9936         144 NACICLGHRNGTVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus       144 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  173 (315)
                      +.+++++-.-..|...|.++++....+-.+
T Consensus       283 d~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  283 DSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            555655555558999998888766555433

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.98  E-value=0.11  Score=41.42  Aligned_cols=74  Identities=11%  Similarity=-0.006  Sum_probs=46.4

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe---------------cCCCceeEEEEeecCcEEEEEeC
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM---------------NVMEEVYDIKWLHLETMFAVAQK   71 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~   71 (315)
                      +.+..++..  +..++.+|++.+.+|.+++||+.+++.....               .....|..+..+.+|.-+++-++
T Consensus         9 i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn   86 (219)
T PF07569_consen    9 IVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN   86 (219)
T ss_pred             EecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence            344555544  4456888999999999999999988764322               12234555555555655555555


Q ss_pred             CeEEEEeCCCC
Q psy9936          72 DWVYIYDNQGI   82 (315)
Q Consensus        72 ~~i~i~~~~~~   82 (315)
                      |..+.|+.+-.
T Consensus        87 g~~y~y~~~L~   97 (219)
T PF07569_consen   87 GDSYSYSPDLG   97 (219)
T ss_pred             CCEEEeccccc
Confidence            66666655433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03098 kelch-like protein; Provisional

Probab=95.87  E-value=0.45  Score=43.59  Aligned_cols=143  Identities=9%  Similarity=0.019  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCceEEEEecCCCce-eEEEEeecCcEEEEEe--C-----CeEEEEeCCCCEEEEe
Q psy9936          21 NGRHLLLGGKR-----GHVAAFDWVRKTLACEMNVMEEV-YDIKWLHLETMFAVAQ--K-----DWVYIYDNQGIELHCL   87 (315)
Q Consensus        21 ~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~--~-----~~i~i~~~~~~~~~~~   87 (315)
                      ++..++.|+.+     ..+..||..+++....-....+. ......-++++++.|+  .     +.+..||+.+......
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            56666777654     34677887776654322211111 1111223566666654  1     4688899876655443


Q ss_pred             ecC--CceEEEEEcCCCceEEEEcCC--------CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC--
Q psy9936          88 KVL--NKVTRMEFLPYHFLLATASEE--------GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN--  153 (315)
Q Consensus        88 ~~~--~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d--  153 (315)
                      ...  ......+...++..++.|+.+        ..+.+||..+++-...  +.........+.+  ++.+++.|+.+  
T Consensus       422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~  499 (534)
T PHA03098        422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE  499 (534)
T ss_pred             CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence            321  111111222356666776643        2388899887653322  1111111122222  66777777654  


Q ss_pred             ---CeEEEEcCCCCc
Q psy9936         154 ---GTVTMWSPTVQK  165 (315)
Q Consensus       154 ---~~i~i~d~~~~~  165 (315)
                         ..+.+||..+.+
T Consensus       500 ~~~~~v~~yd~~~~~  514 (534)
T PHA03098        500 YYINEIEVYDDKTNT  514 (534)
T ss_pred             cccceeEEEeCCCCE
Confidence               468888877653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.80  E-value=0.69  Score=36.20  Aligned_cols=98  Identities=13%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             CEEEEEcCCCeEEEEEcc--CceEEEEecCCCceeEEEEeecCcEEEEEe----CC---eEEEE---eCC---CCE----
Q psy9936          23 RHLLLGGKRGHVAAFDWV--RKTLACEMNVMEEVYDIKWLHLETMFAVAQ----KD---WVYIY---DNQ---GIE----   83 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~---~i~i~---~~~---~~~----   83 (315)
                      +.|..+.....|.+|++.  ..+....+..-+.|..+.++..|.+|++--    ..   .+++|   ...   ...    
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            344444566789999987  456777888889999999999999999863    12   55665   221   111    


Q ss_pred             -------------------EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC
Q psy9936          84 -------------------LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        84 -------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  121 (315)
                                         +..++...++.+++..|...-|++|+. +.+.+|.+..
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~  164 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY  164 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence                               111222356777888886445556654 4788887753

>KOG2280|consensus

Probab=95.77  E-value=1.2  Score=41.16  Aligned_cols=175  Identities=11%  Similarity=0.148  Sum_probs=92.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE-e--c-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE-M--N-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~--~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~   85 (315)
                      +..+..+.|+.+..+|+ ...+|+++||++-....... .  . ....|..+.|..+|-.+.+.++..+.+-+.....+.
T Consensus        83 ~~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~  161 (829)
T KOG2280|consen   83 HGELIGMGWSDDEELIC-VQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLR  161 (829)
T ss_pred             CCCeeeecccCCceEEE-EeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhh
Confidence            44778899998765554 57899999999754332221 1  1 223466666666775554444444444333332222


Q ss_pred             Eeec-C---CceEEEEEcCCCc---eEEEEc-CCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          86 CLKV-L---NKVTRMEFLPYHF---LLATAS-EEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        86 ~~~~-~---~~v~~~~~~~~~~---~l~~~~-~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      ..+. +   -+-.|....+++.   .++-.. ..+ ..++....+ .....+....+.+..+..||+.++|+.=...|.|
T Consensus       162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i  240 (829)
T KOG2280|consen  162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKI  240 (829)
T ss_pred             hCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcE
Confidence            2221 1   1112222222221   111111 010 111211111 1122222223567889999999999998899999


Q ss_pred             EEEcCCCCcceeEeecc-cccEEEEEECCCC
Q psy9936         157 TMWSPTVQKPLASLLCH-KAGIQSVAVNHTG  186 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~-~~~i~~~~~sp~g  186 (315)
                      .+-+.+..+.+..+... ..+...++|+-+.
T Consensus       241 ~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  241 WVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             EEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            99998877777776621 2233366776544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.77  E-value=1.2  Score=38.92  Aligned_cols=104  Identities=12%  Similarity=0.091  Sum_probs=59.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC-----C
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG-----P  209 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~-----~  209 (315)
                      ...+..+++|.+++.+..-..++-||--...-...-......++.+.|.+++.+++++ .+|.+. +....+ .     .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G-~~~~~~~  317 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTG-LTEEDFD  317 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCC-Ccccccc
Confidence            4456677888877777654444445532111011112234678899999999877665 555543 333333 2     2


Q ss_pred             eeEeccC---CCceeEEEccCCe-EEEEcCCEEEec
Q psy9936         210 LNTFRTR---TPINNLAFSQRGL-LATSRGNIVEFL  241 (315)
Q Consensus       210 ~~~~~~~---~~v~~~~~s~~g~-~~~~~~~~i~~~  241 (315)
                      +......   ..+.++.|.+++. ++++..|.+...
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s  353 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS  353 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe
Confidence            2333222   2488899998874 666667766643

>PRK10115 protease 2; Provisional

Probab=95.72  E-value=1.9  Score=40.83  Aligned_cols=189  Identities=7%  Similarity=-0.050  Sum_probs=96.9

Q ss_pred             cEEEEEEcCCCCEEEEEcCC-----CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C------CeEEEEeC
Q psy9936          12 GIYRMNYTKNGRHLLLGGKR-----GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K------DWVYIYDN   79 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~------~~i~i~~~   79 (315)
                      .+..+.+||||++|+.+...     -.|++.|+.++..+...- ...-..++|.+|++.|+.+. +      ..|+.+++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            36778899999998876432     368899998886332211 11125699999987665543 2      36788888


Q ss_pred             CCC--E-EEEeecC-CceE-EEEEcCCCceEEEEcC---CCeEEEEEcc--CCeEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          80 QGI--E-LHCLKVL-NKVT-RMEFLPYHFLLATASE---EGYLSWLDTS--IGKIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        80 ~~~--~-~~~~~~~-~~v~-~~~~~~~~~~l~~~~~---d~~i~~~d~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      .+.  . ...+... .... ....+.++++++..+.   ++.+.+++..  ++.....+....+....+. +..+.+++.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~  285 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLR  285 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEE
Confidence            433  2 2222222 2222 3333447776655433   4568888843  3432222222222222222 333333333


Q ss_pred             EcC---CCeEEEEcCCCCcceeEeecc-c-ccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         150 GHR---NGTVTMWSPTVQKPLASLLCH-K-AGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       150 ~~~---d~~i~i~d~~~~~~~~~~~~~-~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      ...   ...|...++.+......+-.+ . ..+..+.++ .+.++++...++.-+++-+
T Consensus       286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            222   234555555522222333334 2 367778876 2344555556665444433

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.62  E-value=0.54  Score=33.74  Aligned_cols=103  Identities=14%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEcCCCC--------cceeEeecccccEEEEEECC---C--CCEEEEeeCCCcEEEEEcc
Q psy9936         138 MTQNPYNACICLGHRNGTVTMWSPTVQ--------KPLASLLCHKAGIQSVAVNH---T--GTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       138 ~~~~p~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~sp---~--g~~l~~~~~d~~i~iwd~~  204 (315)
                      -.|......|+.++.-|.|.|++....        ..+..+. -...|++++-.|   +  ...|+.|+.. .+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence            355555667888888899999986632        2344444 455677765433   2  3467666655 69999999


Q ss_pred             CCCCCeeEeccCCCceeEEEcc-----CCeEEEEcCCEEEecCC
Q psy9936         205 NLEGPLNTFRTRTPINNLAFSQ-----RGLLATSRGNIVEFLKP  243 (315)
Q Consensus       205 ~~~~~~~~~~~~~~v~~~~~s~-----~g~~~~~~~~~i~~~~~  243 (315)
                      .. .-+..-..+.+++++.+-.     ..+++++++..|..++-
T Consensus        82 ~N-~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~  124 (136)
T PF14781_consen   82 NN-SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY  124 (136)
T ss_pred             cC-chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence            87 5555455566787777743     33677777888886653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.30  E-value=2.8  Score=40.05  Aligned_cols=150  Identities=13%  Similarity=0.066  Sum_probs=89.9

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCCcee-------------EEEEee---cCcEEEEEe----------CCeEE
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVY-------------DIKWLH---LETMFAVAQ----------KDWVY   75 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~l~~~~----------~~~i~   75 (315)
                      +..++.++.|+.+.-.|.++|+....+...+.+.             .+.-.|   ++.+++.+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            3478888899999999999999887765433221             111112   344444432          47799


Q ss_pred             EEeCC-CCEEEEeecC------------------Cce-EEEEEcCCCceEEEEc------------------CCCeEEEE
Q psy9936          76 IYDNQ-GIELHCLKVL------------------NKV-TRMEFLPYHFLLATAS------------------EEGYLSWL  117 (315)
Q Consensus        76 i~~~~-~~~~~~~~~~------------------~~v-~~~~~~~~~~~l~~~~------------------~d~~i~~~  117 (315)
                      -+|.. ++.+......                  ..+ ..+++.+...+++.+.                  ..++|.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            99984 4443332210                  011 2344555544444422                  13457778


Q ss_pred             EccCCeEEEEeccCCCC---------eEEEEEcC-CCC---EEEEEcCCCeEEEEcCCCCcceeEee
Q psy9936         118 DTSIGKIVSDFSAKKGK---------LSVMTQNP-YNA---CICLGHRNGTVTMWSPTVQKPLASLL  171 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~---------v~~~~~~p-~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~  171 (315)
                      |.++|+..-.++.....         ..-+.+.. +|+   .++.++.+|.+.++|.++++++...+
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            88899887776542111         11122322 563   78889999999999999999876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.28  E-value=1.5  Score=40.97  Aligned_cols=140  Identities=11%  Similarity=0.113  Sum_probs=87.8

Q ss_pred             CcEEEEEeCCeEEEEeCCCCEE-------EEee-----------------cCCceEEEEEcC--CCceEEEEcCCCeEEE
Q psy9936          63 ETMFAVAQKDWVYIYDNQGIEL-------HCLK-----------------VLNKVTRMEFLP--YHFLLATASEEGYLSW  116 (315)
Q Consensus        63 ~~~l~~~~~~~i~i~~~~~~~~-------~~~~-----------------~~~~v~~~~~~~--~~~~l~~~~~d~~i~~  116 (315)
                      +.++.++..+.|.||+.++-..       ..+.                 ....|+.|....  ....|+.+.+||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            6777788888999998743111       0000                 012244443332  2357888999999999


Q ss_pred             EEccC-------C-------------eEEEEeccCCCCeEEEEEc--CCCCEEEEEcCCCeEEEEcCCCC--cc-eeEee
Q psy9936         117 LDTSI-------G-------------KIVSDFSAKKGKLSVMTQN--PYNACICLGHRNGTVTMWSPTVQ--KP-LASLL  171 (315)
Q Consensus       117 ~d~~~-------~-------------~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~~d~~i~i~d~~~~--~~-~~~~~  171 (315)
                      |.+++       .             ++...+. -...+++++++  ...++||+++....|.||-....  +. ...-.
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            97632       0             0111222 23468899998  77889999988888888764431  11 11111


Q ss_pred             cccccEEEEEECCCC-----C-EEEEeeCCCcEEEEEc
Q psy9936         172 CHKAGIQSVAVNHTG-----T-YMATSAGDSQLRIWDV  203 (315)
Q Consensus       172 ~~~~~i~~~~~sp~g-----~-~l~~~~~d~~i~iwd~  203 (315)
                      .|...|.+|+|-++.     . ++++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            255678899997753     2 7888899999998888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=95.27  E-value=2  Score=38.76  Aligned_cols=149  Identities=16%  Similarity=0.168  Sum_probs=76.7

Q ss_pred             CcEEEEE----eCCeEEEEeCCCCEEEEeecCCce-EEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC---
Q psy9936          63 ETMFAVA----QKDWVYIYDNQGIELHCLKVLNKV-TRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK---  134 (315)
Q Consensus        63 ~~~l~~~----~~~~i~i~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---  134 (315)
                      +-+++..    ......++|.+|.....+...... ..+...++|.+++...  ..+..+|+. |+.+.......+.   
T Consensus       115 gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~  191 (477)
T PF05935_consen  115 GLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDF  191 (477)
T ss_dssp             -EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B
T ss_pred             cEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccccc
Confidence            3455555    246788888888766555433211 1166788998877665  778888875 6665554432211   


Q ss_pred             eEEEEEcCCCCEEEEEcC-------------CCeEEEEcCCCCcceeEeec--c-----------------------c--
Q psy9936         135 LSVMTQNPYNACICLGHR-------------NGTVTMWSPTVQKPLASLLC--H-----------------------K--  174 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~-------------d~~i~i~d~~~~~~~~~~~~--~-----------------------~--  174 (315)
                      -..+..-|+|++|+.+..             ...|..+| .+|+.+..+..  |                       .  
T Consensus       192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW  270 (477)
T PF05935_consen  192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW  270 (477)
T ss_dssp             -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred             ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence            245677899998887761             12355555 55554444321  1                       0  


Q ss_pred             ccEEEEEECC-CCCEEEEeeCCCcEEEEEccCCCCCeeEeccC
Q psy9936         175 AGIQSVAVNH-TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR  216 (315)
Q Consensus       175 ~~i~~~~~sp-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  216 (315)
                      --++++.+.| ++.+++++-.-..|...|.+++ +....+..+
T Consensus       271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~-~i~Wilg~~  312 (477)
T PF05935_consen  271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG-KIKWILGPP  312 (477)
T ss_dssp             --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS--EEEEES-S
T ss_pred             cccCccEEeCCCCeEEEEcCcceEEEEEECCCC-cEEEEeCCC
Confidence            1368899988 5555555555557888887776 555555443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.23  E-value=0.085  Score=29.46  Aligned_cols=31  Identities=13%  Similarity=0.236  Sum_probs=26.3

Q ss_pred             ccEEEEEECCCC---CEEEEeeCCCcEEEEEccC
Q psy9936         175 AGIQSVAVNHTG---TYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       175 ~~i~~~~~sp~g---~~l~~~~~d~~i~iwd~~~  205 (315)
                      +.+.++.|||..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            467899999864   4899888889999999995

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=95.14  E-value=1.4  Score=39.91  Aligned_cols=140  Identities=6%  Similarity=-0.057  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCC--CeEEEEEccCceEEEEecCCCce-eEEEEeecCcEEEEEe-C---CeEEEEeCCCCEEEEeecCC-c
Q psy9936          21 NGRHLLLGGKR--GHVAAFDWVRKTLACEMNVMEEV-YDIKWLHLETMFAVAQ-K---DWVYIYDNQGIELHCLKVLN-K   92 (315)
Q Consensus        21 ~~~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~~-~   92 (315)
                      ++...++|+.+  ..+..||..+++....-....+. ....-.-+|++.+.|+ +   ..+..||............. +
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            55666667653  35777887666544332222222 1122234677777665 2   35778888766555433221 1


Q ss_pred             -eEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC-----CeEEEEcCCCC
Q psy9936          93 -VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN-----GTVTMWSPTVQ  164 (315)
Q Consensus        93 -v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~i~i~d~~~~  164 (315)
                       ....+..-++...+.|   |.+.+||..+.+-...  +........ ++ --+|++.+.||.+     ..+..||..++
T Consensus       398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        398 HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence             1111223356666665   3577899877654322  221111222 22 2366777777754     34666666654


Q ss_pred             c
Q psy9936         165 K  165 (315)
Q Consensus       165 ~  165 (315)
                      +
T Consensus       473 ~  473 (480)
T PHA02790        473 S  473 (480)
T ss_pred             e
Confidence            3

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.12  E-value=2.2  Score=37.92  Aligned_cols=140  Identities=16%  Similarity=0.222  Sum_probs=82.7

Q ss_pred             cCcEEEEEe--CCeEEEEeCC-CCEEEEeecCCceEEEEEcCCCc-------eEEEEcCCCeEEEEEccC-CeEEEEec-
Q psy9936          62 LETMFAVAQ--KDWVYIYDNQ-GIELHCLKVLNKVTRMEFLPYHF-------LLATASEEGYLSWLDTSI-GKIVSDFS-  129 (315)
Q Consensus        62 ~~~~l~~~~--~~~i~i~~~~-~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~~~d~~~-~~~~~~~~-  129 (315)
                      +..+|....  ...++-.|++ |+.+........+ -+.|.|..+       .-++|-.+..|.-.|.+- |..+.... 
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            444554443  3456666774 5555555555555 567777532       223444555666667653 32222211 


Q ss_pred             -c--CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         130 -A--KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       130 -~--~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                       .  ......+..- ..+-++|.++..|.|++||--.-..-..+++....|..+..+.+|.++++.+.. .+.+-|++
T Consensus       557 KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         557 KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             hhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence             1  1111222222 234489999999999999965444445566777899999999999987766544 57777765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.09  E-value=0.15  Score=28.45  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCC---CEEEEEcCCCeEEEEcCCCC
Q psy9936         133 GKLSVMTQNPYN---ACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus       133 ~~v~~~~~~p~~---~~l~~~~~d~~i~i~d~~~~  164 (315)
                      +.+.++.|+|.+   .+|+.+-.-+.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            358899999844   48888888899999999953

It contains a characteristic DLL sequence motif.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.06  E-value=2.2  Score=37.35  Aligned_cols=179  Identities=12%  Similarity=0.102  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCEEEEE--cC----CCeEEEEEccCceEEEEecCC----CceeEEEEeecCcEEEEEe-------------
Q psy9936          14 YRMNYTKNGRHLLLG--GK----RGHVAAFDWVRKTLACEMNVM----EEVYDIKWLHLETMFAVAQ-------------   70 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~--~~----dg~i~v~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------------   70 (315)
                      ..+-.-|+|+.++++  ..    -|.+.++|-++.+........    .--+++-|.|..+.++++.             
T Consensus       133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred             ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence            334445788888764  22    256888998888777666532    2346677788777777652             


Q ss_pred             --------CCeEEEEeCCCCEEEE-eecC---CceEEEEEcCC--Cce-EEEEcCCCeEEEEEc-cCCe----EEEEecc
Q psy9936          71 --------KDWVYIYDNQGIELHC-LKVL---NKVTRMEFLPY--HFL-LATASEEGYLSWLDT-SIGK----IVSDFSA  130 (315)
Q Consensus        71 --------~~~i~i~~~~~~~~~~-~~~~---~~v~~~~~~~~--~~~-l~~~~~d~~i~~~d~-~~~~----~~~~~~~  130 (315)
                              ..++.+||....++.. +...   ..+..+.|..+  ..+ ++.+...++|..|-- ..++    .+..+..
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence                    1479999997655443 3332   24567777654  333 333334555655543 3342    2222211


Q ss_pred             C-----------------CCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCCCc---ceeEee-c---------------c
Q psy9936         131 K-----------------KGKLSVMTQNPYNACICLGH-RNGTVTMWSPTVQK---PLASLL-C---------------H  173 (315)
Q Consensus       131 ~-----------------~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~~~---~~~~~~-~---------------~  173 (315)
                      .                 ..-++.+..|.|.++|+.++ ..|.|+.||+....   .+.++. +               -
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l  372 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL  372 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence            0                 24578999999999887765 48999999988642   222221 1               1


Q ss_pred             cccEEEEEECCCCCEEEEe
Q psy9936         174 KAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~  192 (315)
                      .+...-+..|.||+.|+..
T Consensus       373 ~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  373 RGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -S----EEE-TTSSEEEEE
T ss_pred             CCCCCeEEEccCCeEEEEE
Confidence            1234667888888877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=1.4  Score=34.39  Aligned_cols=169  Identities=11%  Similarity=0.046  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCC--CeEEEEEccCceEEEEecCC-CceeEEEE--eecCcEEEEEeCCeEEEEeCCC-CEEEEeecCCceE
Q psy9936          21 NGRHLLLGGKR--GHVAAFDWVRKTLACEMNVM-EEVYDIKW--LHLETMFAVAQKDWVYIYDNQG-IELHCLKVLNKVT   94 (315)
Q Consensus        21 ~~~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~l~~~~~~~i~i~~~~~-~~~~~~~~~~~v~   94 (315)
                      +|.++.+.+.-  ..|++||+.+++.+...... ..+..=-.  ..|.-+..+=.++.-..+|.++ +++-.+...+.-+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            34455544432  46999999999887665422 12221111  1122233333477777787743 2333333334445


Q ss_pred             EEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe----ccC-CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeE
Q psy9936          95 RMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF----SAK-KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLAS  169 (315)
Q Consensus        95 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~-~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~  169 (315)
                      .+.  .++..|+.+....++..-|.++-....++    .+. -..++.+.| -+|...|-.=.+..|...|..+|+.+..
T Consensus       135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~w  211 (262)
T COG3823         135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAW  211 (262)
T ss_pred             eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEE
Confidence            554  34555666655667777776653322222    111 111233333 2444443333333444555555554433


Q ss_pred             ee------------cccccEEEEEECCCC-CEEEEe
Q psy9936         170 LL------------CHKAGIQSVAVNHTG-TYMATS  192 (315)
Q Consensus       170 ~~------------~~~~~i~~~~~sp~g-~~l~~~  192 (315)
                      +.            .|..-.+.+++.|++ ++++||
T Consensus       212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            32            234567889999987 455555

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=94.76  E-value=0.86  Score=42.48  Aligned_cols=140  Identities=11%  Similarity=0.048  Sum_probs=72.4

Q ss_pred             EEEcCCCceEEEEcC----CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC-----eEEEEcCC---C
Q psy9936          96 MEFLPYHFLLATASE----EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG-----TVTMWSPT---V  163 (315)
Q Consensus        96 ~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-----~i~i~d~~---~  163 (315)
                      +.|--|..+.+++..    ...+++|.- .|+.-..-..-.+.-..++|-|.|..+++-+.||     .|.++..+   .
T Consensus       207 i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH  285 (1243)
T COG5290         207 IFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH  285 (1243)
T ss_pred             EEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCccc
Confidence            556556566655543    233666652 2322221111222334578999999999876554     46666532   2


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-CCCceeEEEccCC--eEEEEcCCEEE
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-RTPINNLAFSQRG--LLATSRGNIVE  239 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g--~~~~~~~~~i~  239 (315)
                      |+.-... +-...+..++|+.....++.+ ..+.+++|-..+. .=...... -.++.-+.|+|..  .++.+..+.|.
T Consensus       286 Gef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy-hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~  361 (1243)
T COG5290         286 GEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY-HWYLKVERQIPGISYVKWHPEEKNTLLFRDGERIL  361 (1243)
T ss_pred             CCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce-EEEEEEeecCCCcceeeeccccCcEEEEecCCeEE
Confidence            3321111 223445667787666655544 4457999987664 21111111 1246667788764  34444444443

>KOG2377|consensus

Probab=94.76  E-value=2.6  Score=36.87  Aligned_cols=116  Identities=14%  Similarity=0.166  Sum_probs=72.5

Q ss_pred             EeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-----CCCceeEEEEeecCcEEEEEeCCeEEEEeC-
Q psy9936           6 DLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-----VMEEVYDIKWLHLETMFAVAQKDWVYIYDN-   79 (315)
Q Consensus         6 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-   79 (315)
                      +..-.++|.++.||+|.+.||+--.+..|.+++....+....+.     ....|....|+.+. -+|.-.+.-+-+|.. 
T Consensus        62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G~e~y~v~  140 (657)
T KOG2377|consen   62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQGIEFYQVL  140 (657)
T ss_pred             eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCCeEEEEEc
Confidence            33347899999999999999999999999999986555433332     23458899998774 444444444555544 


Q ss_pred             -CCCEEEEee-cCCceEEEEEcCCCceEEEEc--CCCeEEEEEccCC
Q psy9936          80 -QGIELHCLK-VLNKVTRMEFLPYHFLLATAS--EEGYLSWLDTSIG  122 (315)
Q Consensus        80 -~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~  122 (315)
                       ....++..+ +...|.=..|.++.+.+.-++  ...++.=+.++++
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence             333333333 335676677888766433332  3444444444443

>KOG2247|consensus

Probab=94.74  E-value=0.0037  Score=53.99  Aligned_cols=134  Identities=16%  Similarity=0.177  Sum_probs=93.3

Q ss_pred             eeEEEEeecCcEEEEE-eCCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEE-EEcCCCeEEEEEccCCeEEEEecc-
Q psy9936          54 VYDIKWLHLETMFAVA-QKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSIGKIVSDFSA-  130 (315)
Q Consensus        54 v~~~~~~~~~~~l~~~-~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~-  130 (315)
                      .....|-|.+.-++.+ .+..+..||-.++.+.....+.....++|..++..++ .+-..+.+.+||+.+... +.+.. 
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~g  115 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESG  115 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhcc
Confidence            3445677765445544 4778888998777766666667778889988876544 455678899999975422 22221 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCE
Q psy9936         131 KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTY  188 (315)
Q Consensus       131 ~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~  188 (315)
                      ....-.-+.|++.+..++.+...|.+.+++..+.+.+-..-.|...+++++|.+.+..
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v  173 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV  173 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee
Confidence            1111122679999999999989999999998877655444448889999999987653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.69  E-value=0.22  Score=43.12  Aligned_cols=158  Identities=18%  Similarity=0.162  Sum_probs=94.9

Q ss_pred             CceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee--c--CC----ceE-EEEEcCCCceEEEEcCCCeEEEE-EccC
Q psy9936          52 EEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK--V--LN----KVT-RMEFLPYHFLLATASEEGYLSWL-DTSI  121 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~--~--~~----~v~-~~~~~~~~~~l~~~~~d~~i~~~-d~~~  121 (315)
                      +.+..+-..|||+.+.+-+...+.++++..+.+..-+  .  .+    .|+ .+..-..|.-+.+++.||-|.-| |.+.
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~  300 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR  300 (733)
T ss_pred             cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence            3466677889999998888888889888554332211  1  11    121 12222345567788888887655 5543


Q ss_pred             C-e----EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC
Q psy9936         122 G-K----IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS  196 (315)
Q Consensus       122 ~-~----~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~  196 (315)
                      + .    .++.+.-....+..+.-..+.+-+++-+..|++.++.....+.+-.-. --..+.-+++||.+.+|++- ..|
T Consensus       301 ~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e-~~g  378 (733)
T COG4590         301 DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSE-DQG  378 (733)
T ss_pred             CCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheee-cCC
Confidence            2 1    222233233344434333344567778888988888766554443222 22356678999999998764 445


Q ss_pred             cEEEEEccCCCCCeeE
Q psy9936         197 QLRIWDVRNLEGPLNT  212 (315)
Q Consensus       197 ~i~iwd~~~~~~~~~~  212 (315)
                      .|+++.+.+. .+--+
T Consensus       379 ki~~~~l~Nr-~Peis  393 (733)
T COG4590         379 KIRLAQLENR-NPEIS  393 (733)
T ss_pred             ceEEEEecCC-CCCcc
Confidence            7999999886 44433

>KOG2377|consensus

Probab=94.60  E-value=2.9  Score=36.63  Aligned_cols=96  Identities=13%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEe----ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         131 KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASL----LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       131 ~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      ..++|.++.||+|.+.+|+--.+.+|.+++....++...+    +.....|.+..|+.+ .-+|..+..| +-+|.....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            4568999999999999999999999999997543332222    223446889999876 4566655554 667766544


Q ss_pred             CCCeeEeccCC-CceeEEEccCC
Q psy9936         207 EGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       207 ~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                      ...++..+.+. +|.-..|.|+.
T Consensus       143 krslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             hhhhhhhhhcccCccEEEEcccc
Confidence            34455555554 67777888876

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.58  E-value=2.9  Score=36.60  Aligned_cols=141  Identities=12%  Similarity=0.051  Sum_probs=78.5

Q ss_pred             EEEEEcCCCceEEEEcCCCeEEEEEccCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc-----c
Q psy9936          94 TRMEFLPYHFLLATASEEGYLSWLDTSIGKI--VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK-----P  166 (315)
Q Consensus        94 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~-----~  166 (315)
                      ..+..++++.+++.+..-.-++-||-  |..  ...-......++.+.+.+++.+++++ ..|.+.. ....++     .
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence            34556677766666543322233432  222  11112234568899999999877766 4555443 333332     2


Q ss_pred             eeEeec--ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec----cCCCceeEEEccCC-eEEEEcCCEEE
Q psy9936         167 LASLLC--HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR----TRTPINNLAFSQRG-LLATSRGNIVE  239 (315)
Q Consensus       167 ~~~~~~--~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~g-~~~~~~~~~i~  239 (315)
                      ......  ....+..+.|.+++..+++ +..|.+.... ..+ +.-....    ...+.+.+.|.+++ .++++.+|.|-
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il  394 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGG-KSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL  394 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCC-cceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence            232221  1235889999988876555 4667555543 333 4433332    12357899997766 47777788775


Q ss_pred             ec
Q psy9936         240 FL  241 (315)
Q Consensus       240 ~~  241 (315)
                      .+
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            54

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.46  E-value=2.8  Score=35.76  Aligned_cols=97  Identities=15%  Similarity=0.223  Sum_probs=58.8

Q ss_pred             eEEEEEcCCCCEEEEEcCC------CeEEEEcCCCCcceeEee---------------cccccEEEEEECCCCCEEEEee
Q psy9936         135 LSVMTQNPYNACICLGHRN------GTVTMWSPTVQKPLASLL---------------CHKAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---------------~~~~~i~~~~~sp~g~~l~~~~  193 (315)
                      .-+|++.++|.++++.-.+      ..|..++.. ++.+..+.               .......+++++|+|+.|+++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            4467777788777776556      788888876 65544431               1234678999999999666653


Q ss_pred             C-----CC--c-------EEEE--EccCCCCCeeEe--cc--------CCCceeEEEccCCeEEE
Q psy9936         194 G-----DS--Q-------LRIW--DVRNLEGPLNTF--RT--------RTPINNLAFSQRGLLAT  232 (315)
Q Consensus       194 ~-----d~--~-------i~iw--d~~~~~~~~~~~--~~--------~~~v~~~~~s~~g~~~~  232 (315)
                      .     |+  .       ++++  |..+...+...+  ..        ...+..+.+-+++.+++
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence            2     22  1       4454  444311233322  21        23578888888885544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.38  E-value=3.5  Score=36.69  Aligned_cols=55  Identities=22%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe--EEEEec-----cCCCCeEEEEEcCCC
Q psy9936          90 LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK--IVSDFS-----AKKGKLSVMTQNPYN  144 (315)
Q Consensus        90 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~-----~~~~~v~~~~~~p~~  144 (315)
                      ....+.|+|.|+|.+|++--..|.|++++..++.  .+..+.     ...+....|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3566778888888766655445778777754432  111111     124557788888874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.29  E-value=2.7  Score=34.91  Aligned_cols=173  Identities=12%  Similarity=0.082  Sum_probs=98.8

Q ss_pred             CcEEEEEEcCCCCE------------EEEEcCCCeEEEEEccCceE-----EEEec--CCCce-eEEEEeec--CcEEEE
Q psy9936          11 FGIYRMNYTKNGRH------------LLLGGKRGHVAAFDWVRKTL-----ACEMN--VMEEV-YDIKWLHL--ETMFAV   68 (315)
Q Consensus        11 ~~v~~~~~s~~~~~------------l~~~~~dg~i~v~~~~~~~~-----~~~~~--~~~~v-~~~~~~~~--~~~l~~   68 (315)
                      ..++.+.|+....+            ++.++.+|+|.-|...-+..     ...+.  ....| ..+++...  +.+|..
T Consensus        77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa  156 (336)
T TIGR03118        77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA  156 (336)
T ss_pred             CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence            45677777653333            56677899999997532211     12222  12233 34555543  566666


Q ss_pred             Ee--CCeEEEEeCCCCEEEEee--------c------------CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE
Q psy9936          69 AQ--KDWVYIYDNQGIELHCLK--------V------------LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS  126 (315)
Q Consensus        69 ~~--~~~i~i~~~~~~~~~~~~--------~------------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  126 (315)
                      +.  .++|.++|-.-..+....        .            .-.|+...-.++.+.=+.+..-|.|-+||+. |..++
T Consensus       157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~  235 (336)
T TIGR03118       157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLR  235 (336)
T ss_pred             eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEE
Confidence            64  789999986443322110        0            0011111112222222333445789999976 88888


Q ss_pred             Eecc--CCCCeEEEEEcC------CCCEEEEEcCCCeEEEEcCCCCcceeEeeccc------ccEEEEEECC
Q psy9936         127 DFSA--KKGKLSVMTQNP------YNACICLGHRNGTVTMWSPTVQKPLASLLCHK------AGIQSVAVNH  184 (315)
Q Consensus       127 ~~~~--~~~~v~~~~~~p------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~sp  184 (315)
                      ++..  .-...+.|+..|      .|.+|+---.||+|..||..+++.+..+....      ..++.++|-.
T Consensus       236 r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       236 RVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            7742  223456677655      45667666679999999999998887776433      2456777754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4460|consensus

Probab=94.27  E-value=1.4  Score=39.13  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEc---------CCCCcceeEee-----------cccccEEEEEECCCC---CEEEE
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWS---------PTVQKPLASLL-----------CHKAGIQSVAVNHTG---TYMAT  191 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d---------~~~~~~~~~~~-----------~~~~~i~~~~~sp~g---~~l~~  191 (315)
                      |..+..++.|..++..|.+|.+.++=         +..|++....+           ...-.+..++|+|+.   .+|..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            66778899999999998898665543         12333321111           011245678999985   58888


Q ss_pred             eeCCCcEEEEEccCC
Q psy9936         192 SAGDSQLRIWDVRNL  206 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~  206 (315)
                      -+.|+.||+||+...
T Consensus       186 L~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSEP  200 (741)
T ss_pred             EecCcEEEEEecCCc
Confidence            899999999999765

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=94.23  E-value=2.9  Score=35.11  Aligned_cols=70  Identities=11%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccccc-----EEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAG-----IQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      +++|...++|++|++.-.-..|.+.|.++++.+..+.+....     -...+|-.+-+++-.+..++.|.|+|-.
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            788888899999999988889999999999988888655221     1124455555566566778888888874

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=94.23  E-value=4.7  Score=37.48  Aligned_cols=226  Identities=11%  Similarity=0.066  Sum_probs=121.5

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEc-cCceEEEEec--CCCceeEEEEeec---CcEEEEE-eC-CeEEEEeC--C---
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDW-VRKTLACEMN--VMEEVYDIKWLHL---ETMFAVA-QK-DWVYIYDN--Q---   80 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~-~~~~~~~~~~--~~~~v~~~~~~~~---~~~l~~~-~~-~~i~i~~~--~---   80 (315)
                      .+..++|+...+-.|=....|.-|=+ .+.+++..+.  ....|.|+.....   .++.++| .+ +.-++..+  .   
T Consensus        31 vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~  110 (670)
T PF10395_consen   31 VSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGS  110 (670)
T ss_pred             eecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcc
Confidence            33467777777665544444544433 3566666655  4456777765432   2344444 33 33333322  2   


Q ss_pred             ---------CCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE--Eecc-CCCC-eEEEEEcC-----
Q psy9936          81 ---------GIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS--DFSA-KKGK-LSVMTQNP-----  142 (315)
Q Consensus        81 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~-~~~~-v~~~~~~p-----  142 (315)
                               ......++-...|..+.+.++++.+++...+|.|.+||...+....  .+.. +... +.. +|-+     
T Consensus       111 ~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~  189 (670)
T PF10395_consen  111 TEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELE  189 (670)
T ss_pred             ccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccc
Confidence                     1122234456889999999999999999999999999993322111  2211 1111 111 2222     


Q ss_pred             C-CCEEEEEcC-C---CeEEEEcCC-CCcceeEee---cccccEEEEEECC-CCCEEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         143 Y-NACICLGHR-N---GTVTMWSPT-VQKPLASLL---CHKAGIQSVAVNH-TGTYMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       143 ~-~~~l~~~~~-d---~~i~i~d~~-~~~~~~~~~---~~~~~i~~~~~sp-~g~~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                      + ..++++.+. +   -..+++.+. ....+..+.   .+........|+- +|.+...  .++.|.+|++... +...+
T Consensus       190 ~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f-~~~~t  266 (670)
T PF10395_consen  190 NGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNF-QIQKT  266 (670)
T ss_pred             cCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCc-eEEEE
Confidence            1 234444333 2   256777772 223333332   1222222223332 4554433  6778999999887 77776


Q ss_pred             eccCC-------CceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         213 FRTRT-------PINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       213 ~~~~~-------~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +....       .+.++.--...+++.+.+++|...+.
T Consensus       267 I~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~  304 (670)
T PF10395_consen  267 ISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDL  304 (670)
T ss_pred             EEechhhccccccceEeecCCCCeEEEEcCCEEEEEee
Confidence            65542       23333322234788888999986655

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.13  E-value=0.66  Score=40.62  Aligned_cols=80  Identities=16%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             ceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEE-EEE-cCCC---------------C--EEEEEcC
Q psy9936          92 KVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSV-MTQ-NPYN---------------A--CICLGHR  152 (315)
Q Consensus        92 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~-~p~~---------------~--~l~~~~~  152 (315)
                      .+.++..+|++.+.|+...-|.|.++|+.++..++.+++..+.-.. +.. .+..               .  +++.+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            4678999999999988888899999999999888887765442111 111 1110               1  2344667


Q ss_pred             CCeEEEEcCCCCcceeEee
Q psy9936         153 NGTVTMWSPTVQKPLASLL  171 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~~~~  171 (315)
                      .|.|.||.++++..+..+.
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCeEEEEecCCCCEEEEEE
Confidence            8999999999988777665

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.02  E-value=0.29  Score=27.01  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=29.9

Q ss_pred             CCCCEEEEee-CCCcEEEEEccCCCCCeeEeccCCCceeEEEc
Q psy9936         184 HTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS  225 (315)
Q Consensus       184 p~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  225 (315)
                      |++++|+++. .+++|.++|..++ ..+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~-~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN-KVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC-eEEEEEECCCCCceEEeC
Confidence            6777666654 5778999999887 777777765556666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02153 epithiospecifier protein

Probab=93.86  E-value=3.8  Score=35.12  Aligned_cols=145  Identities=11%  Similarity=0.040  Sum_probs=71.5

Q ss_pred             CCCEEEEEcCC-------CeEEEEEccCceEEEEecCC--Cce--eEE-EEeecCcEEEEEe-C-----CeEEEEeCCCC
Q psy9936          21 NGRHLLLGGKR-------GHVAAFDWVRKTLACEMNVM--EEV--YDI-KWLHLETMFAVAQ-K-----DWVYIYDNQGI   82 (315)
Q Consensus        21 ~~~~l~~~~~d-------g~i~v~~~~~~~~~~~~~~~--~~v--~~~-~~~~~~~~l~~~~-~-----~~i~i~~~~~~   82 (315)
                      ++..++.|+.+       ..+.+||+.+.+........  ...  ... .-.-++++++.|+ +     ..+.+||+...
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence            45566666653       25788888876654322111  111  111 1122556666654 2     36888998766


Q ss_pred             EEEEeec------C-CceEEEEEcCCCceEEEEcCC-----------CeEEEEEccCCeEEEEecc---CCCC-eEEEEE
Q psy9936          83 ELHCLKV------L-NKVTRMEFLPYHFLLATASEE-----------GYLSWLDTSIGKIVSDFSA---KKGK-LSVMTQ  140 (315)
Q Consensus        83 ~~~~~~~------~-~~v~~~~~~~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~---~~~~-v~~~~~  140 (315)
                      ....+..      . ......+...++++++.|+.+           ..+.+||+.+.+-...-..   ...+ -.+++.
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~  191 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV  191 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE
Confidence            5554332      1 111212223346666776643           2477889887643321110   0111 111222


Q ss_pred             cCCCCEEEEEcCC-------------CeEEEEcCCCCcc
Q psy9936         141 NPYNACICLGHRN-------------GTVTMWSPTVQKP  166 (315)
Q Consensus       141 ~p~~~~l~~~~~d-------------~~i~i~d~~~~~~  166 (315)
                       -++++++.++.+             ..+.+||+.+.+-
T Consensus       192 -~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W  229 (341)
T PLN02153        192 -VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW  229 (341)
T ss_pred             -ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence             355665655432             4588899887643

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.85  E-value=0.63  Score=35.53  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=25.7

Q ss_pred             ccEEEEEECCCCC------EEEEeeCCCcEEEEEccC
Q psy9936         175 AGIQSVAVNHTGT------YMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       175 ~~i~~~~~sp~g~------~l~~~~~d~~i~iwd~~~  205 (315)
                      ..+..++|||.|-      +||+.+.++.+.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            4788999999642      788999999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.79  E-value=4.1  Score=35.26  Aligned_cols=191  Identities=15%  Similarity=0.199  Sum_probs=109.2

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEee----cCcE--EEEEe---C--CeEEEEeCC--CCEEEE
Q psy9936          20 KNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH----LETM--FAVAQ---K--DWVYIYDNQ--GIELHC   86 (315)
Q Consensus        20 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~~~~---~--~~i~i~~~~--~~~~~~   86 (315)
                      |...+|+....++-+.+||++...+ ..+. .+.++.+..-.    +|+.  |++++   +  +.|.+|.++  ...+..
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~l-q~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKEL-QSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EE-EEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEE-Eeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            3445777777788899999876544 4443 23444443321    3432  44443   2  469999773  344544


Q ss_pred             eec--------CCceEEEEE--cC-CCc-eEEEEcCCCeEEEEEcc---CC----eEEEEeccCCCCeEEEEEcCCCCEE
Q psy9936          87 LKV--------LNKVTRMEF--LP-YHF-LLATASEEGYLSWLDTS---IG----KIVSDFSAKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        87 ~~~--------~~~v~~~~~--~~-~~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~v~~~~~~p~~~~l  147 (315)
                      +..        ...++.+++  +| +|. +++....+|.+.-|-+.   .+    +.++.|... +.+..|........|
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETGRL  222 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTTEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccCCE
Confidence            332        134566665  44 344 55667788988877764   23    467777653 468888888888899


Q ss_pred             EEEcCCCeEEEEcCCCC-----cceeEeec--ccccEEEEEEC--CCCC-EEE-EeeCCCcEEEEEccCCCCCeeEe
Q psy9936         148 CLGHRNGTVTMWSPTVQ-----KPLASLLC--HKAGIQSVAVN--HTGT-YMA-TSAGDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~-----~~~~~~~~--~~~~i~~~~~s--p~g~-~l~-~~~~d~~i~iwd~~~~~~~~~~~  213 (315)
                      +.+-++.-|+-|+.+..     +.+....+  ....|..|++-  +++. ||+ +.-.+++..||+.......+..|
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            99999999999987632     22222222  34577777774  3443 444 44567789999988642434444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.74  E-value=3.8  Score=34.78  Aligned_cols=104  Identities=9%  Similarity=0.006  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCceEE---EEec-CCCce-eEEEEeecCcEEEEEeC------CeEEEEeCCCCEE
Q psy9936          21 NGRHLLLGGKR-----GHVAAFDWVRKTLA---CEMN-VMEEV-YDIKWLHLETMFAVAQK------DWVYIYDNQGIEL   84 (315)
Q Consensus        21 ~~~~l~~~~~d-----g~i~v~~~~~~~~~---~~~~-~~~~v-~~~~~~~~~~~l~~~~~------~~i~i~~~~~~~~   84 (315)
                      ++..++.|+.+     ..+..+|+.+.+..   ..+. ...+. ...+..-++++++.++.      ..+..||+.....
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            44555666653     35666777665531   1221 11111 11122235666666541      4688899876655


Q ss_pred             EEeecC---CceEEEEEcCCCceEEEEcCCC----eEEEEEccCCeE
Q psy9936          85 HCLKVL---NKVTRMEFLPYHFLLATASEEG----YLSWLDTSIGKI  124 (315)
Q Consensus        85 ~~~~~~---~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~  124 (315)
                      ..+...   ..........++++++.|+.++    .+.+||+.+.+-
T Consensus       152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            544321   1222233344577777777653    356889887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.67  E-value=0.61  Score=37.11  Aligned_cols=65  Identities=11%  Similarity=0.123  Sum_probs=47.7

Q ss_pred             EcCCCCEEEEEcCCCeEEEEcCCCCcceeEe-------e-------cccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         140 QNPYNACICLGHRNGTVTMWSPTVQKPLASL-------L-------CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       140 ~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~-------~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      +..++++|++...+|.+++||+.+.+.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457888999999999999999987643221       1       2345778888888888776654 46788888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.66  E-value=4  Score=34.78  Aligned_cols=140  Identities=13%  Similarity=0.119  Sum_probs=80.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCe------EEEEEccC--c---eE--EE--Eec-CCC--------ceeEEEEeecCcE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGH------VAAFDWVR--K---TL--AC--EMN-VME--------EVYDIKWLHLETM   65 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~------i~v~~~~~--~---~~--~~--~~~-~~~--------~v~~~~~~~~~~~   65 (315)
                      -+++..+.+.|++..+++.+.+|.      +..+.+..  +   ..  ..  .+. ..+        ..-++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            367789999965555555566666      55555433  1   11  11  111 111        2236788778887


Q ss_pred             EEEEe-C------CeEEEEeCCCCEEEEe----------------ecCCceEEEEEcCCCceEEEEcC-----CC-----
Q psy9936          66 FAVAQ-K------DWVYIYDNQGIELHCL----------------KVLNKVTRMEFLPYHFLLATASE-----EG-----  112 (315)
Q Consensus        66 l~~~~-~------~~i~i~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~-----d~-----  112 (315)
                      +++.. +      ..|..++.++.....+                .......+++++|+|+.|+++.+     |+     
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            77764 5      5788888775443322                12256789999999996666533     22     


Q ss_pred             ------eEEEEEccC-CeE----EEEecc-----CCCCeEEEEEcCCCCEEEE
Q psy9936         113 ------YLSWLDTSI-GKI----VSDFSA-----KKGKLSVMTQNPYNACICL  149 (315)
Q Consensus       113 ------~i~~~d~~~-~~~----~~~~~~-----~~~~v~~~~~~p~~~~l~~  149 (315)
                            .|..||..+ +..    ...+..     ....+..+.+-+++++|+.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  234455544 222    222222     3456788888888886654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.43  E-value=5.4  Score=35.55  Aligned_cols=105  Identities=15%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc--ceeEee-----cccccEEEEEECCCC------CEEEEee-----
Q psy9936         132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK--PLASLL-----CHKAGIQSVAVNHTG------TYMATSA-----  193 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~-----~~~~~i~~~~~sp~g------~~l~~~~-----  193 (315)
                      -.....|+|.|||++|++--..|.|++++..++.  .+..+.     ...+....|+++|+-      .+|+...     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            3456889999999877766546999999865542  221111     124678899999985      2444332     


Q ss_pred             -----CCCcEEEEEccCC----CCCeeEecc---C--CCceeEEEccCC-eEEEEcCC
Q psy9936         194 -----GDSQLRIWDVRNL----EGPLNTFRT---R--TPINNLAFSQRG-LLATSRGN  236 (315)
Q Consensus       194 -----~d~~i~iwd~~~~----~~~~~~~~~---~--~~v~~~~~s~~g-~~~~~~~~  236 (315)
                           ....|.-|.+...    ......+..   .  ..-..|.|.||| +|++.+|+
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1223444544321    011111211   1  124678899999 56666665

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=93.43  E-value=6.9  Score=36.74  Aligned_cols=193  Identities=16%  Similarity=0.075  Sum_probs=96.4

Q ss_pred             EEEEEEcCCCCEEEEEcCC---------CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CC----eEEEEe
Q psy9936          13 IYRMNYTKNGRHLLLGGKR---------GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KD----WVYIYD   78 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~d---------g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~----~i~i~~   78 (315)
                      +....++|.+..++.....         ..+.+.|...   +....+...+..+.|+|++..++... ++    .+++.+
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~   91 (620)
T COG1506          15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVD   91 (620)
T ss_pred             ccCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEe
Confidence            3344566666655543322         2333333222   22333566788899999999998876 32    455555


Q ss_pred             CCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          79 NQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      ..+   ........+....|+|.+..++....++....    .+. -..+.    .-..+-|...+      +....+.+
T Consensus        92 ~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~----~~~-~~~~~----~~~~~~~~~~g------~~~~~l~~  153 (620)
T COG1506          92 VGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKR----DGG-DHLFV----DRLPVWFDGRG------GERSDLYV  153 (620)
T ss_pred             cCC---ceeeeecccccceeCCCCCeEEEEeccccccc----CCc-eeeee----cccceeecCCC------CcccceEE
Confidence            552   23334467788899999988877222210000    000 00000    00011222222      23445555


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCc-------EEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ-------LRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      .|..+  ...........+....+++++..++....+..       ..++...++ ...........+..+.|.++|.
T Consensus       154 ~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gk  228 (620)
T COG1506         154 VDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELESLTPGEGSISKLAFDADGK  228 (620)
T ss_pred             EccCc--ccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceEEEcCCCceeeeeeeCCCCC
Confidence            56554  22333334556667777776776665543331       223333233 3333333334577777777774

>KOG1897|consensus

Probab=93.30  E-value=8.2  Score=37.27  Aligned_cols=216  Identities=13%  Similarity=0.098  Sum_probs=109.9

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeec--C----cEEEEEe-CCe-EEEEeCC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHL--E----TMFAVAQ-KDW-VYIYDNQ   80 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~--~----~~l~~~~-~~~-i~i~~~~   80 (315)
                      +.++....+.+...++.++.++.+...+...+.+.....  ....|.|+.++|-  +    +++++|. +.. +.+.-..
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p  567 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP  567 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence            444555555555667777666666666666555333222  4467899999973  2    3677774 433 3333222


Q ss_pred             CCEEEE---eec---CCceEEEEEcCCCceEEEEcCCCeEEEEEcc--CCeEEEEe--ccCCCCeEEEEEcCCCCEEEEE
Q psy9936          81 GIELHC---LKV---LNKVTRMEFLPYHFLLATASEEGYLSWLDTS--IGKIVSDF--SAKKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        81 ~~~~~~---~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~  150 (315)
                      ...+.+   +..   +..|....+-.+..+|.++..||.+..|.+.  ++..-..-  .....++.--.|+..++.-+.+
T Consensus       568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa  647 (1096)
T KOG1897|consen  568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA  647 (1096)
T ss_pred             CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence            222222   111   1345555666668899999999998776554  44322211  1223445545666655544444


Q ss_pred             cCCCeEEEEcCCCCcceeEeecccccEEE-EEECCC--CCEEEEeeCCCcEEEEEccCCC-CCeeEeccCCCceeEEEcc
Q psy9936         151 HRNGTVTMWSPTVQKPLASLLCHKAGIQS-VAVNHT--GTYMATSAGDSQLRIWDVRNLE-GPLNTFRTRTPINNLAFSQ  226 (315)
Q Consensus       151 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~sp~--g~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~  226 (315)
                      ..|.-..+|..+..-....+..  ..+.. ..|+.+  ...|+.+..+ .+++.-+..-. -.++++..+.+++.+++.+
T Consensus       648 ~sdrP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~~~-~l~i~tid~iqkl~irtvpl~~~prrI~~q~  724 (1096)
T KOG1897|consen  648 LSDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASANGG-ALTIGTIDEIQKLHIRTVPLGESPRRICYQE  724 (1096)
T ss_pred             eCCCCEEEEecCCcEEEeccch--HHhhhhcccccccCCceEEEecCC-ceEEEEecchhhcceeeecCCCChhheEecc
Confidence            4455555555442211111110  01111 122222  2235544433 46666555431 2344466666778888887


Q ss_pred             CCe
Q psy9936         227 RGL  229 (315)
Q Consensus       227 ~g~  229 (315)
                      ..+
T Consensus       725 ~sl  727 (1096)
T KOG1897|consen  725 SSL  727 (1096)
T ss_pred             cce
Confidence            543

>KOG1983|consensus

Probab=93.30  E-value=5.6  Score=39.36  Aligned_cols=35  Identities=9%  Similarity=0.151  Sum_probs=28.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL   44 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~   44 (315)
                      ......++|+|...++|.++..|.|++|....-+.
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccceEE
Confidence            44567889999999999999999999998654443

>KOG1897|consensus

Probab=93.29  E-value=8.3  Score=37.26  Aligned_cols=170  Identities=10%  Similarity=-0.020  Sum_probs=91.1

Q ss_pred             EEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEeecC---CceEEEEEcCCC------c
Q psy9936          34 VAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLKVL---NKVTRMEFLPYH------F  103 (315)
Q Consensus        34 i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~---~~v~~~~~~~~~------~  103 (315)
                      |++++-.  .....+..++.++...-+.+...++.+. ++.+....+....+....+.   ..|.|+.++|-|      .
T Consensus       472 iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~  549 (1096)
T KOG1897|consen  472 IRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSR  549 (1096)
T ss_pred             EEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcce
Confidence            4555433  1233334444555544445554555554 46666666644444444433   789999999852      3


Q ss_pred             eEEEEcCCCeEEEEE-ccCCeEEEEe--cc--CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC--CCcce--eEeeccc
Q psy9936         104 LLATASEEGYLSWLD-TSIGKIVSDF--SA--KKGKLSVMTQNPYNACICLGHRNGTVTMWSPT--VQKPL--ASLLCHK  174 (315)
Q Consensus       104 ~l~~~~~d~~i~~~d-~~~~~~~~~~--~~--~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~--~~~~~--~~~~~~~  174 (315)
                      ++++|.++..+.+.- +.+...+...  .+  -+..|.-..+-.|+.+|.++..||.+.-|-+.  ++..-  +...-..
T Consensus       550 ~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt  629 (1096)
T KOG1897|consen  550 LLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT  629 (1096)
T ss_pred             EEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCC
Confidence            788888776654433 2333333222  11  12234445566678899999999988766554  43211  1111123


Q ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         175 AGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       175 ~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      .|+.=-.|+..++.-+.+..|.-.-+|--+.
T Consensus       630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~  660 (1096)
T KOG1897|consen  630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNG  660 (1096)
T ss_pred             CCcEEEEEeeCCceEEEEeCCCCEEEEecCC
Confidence            4555556666655444455555555565443

>KOG4460|consensus

Probab=93.25  E-value=1.8  Score=38.52  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             ceEEEEEcCCCceEEEEcCCCeEEEEEc---------cCCeEEE---Eec-------c-CCCCeEEEEEcCCC---CEEE
Q psy9936          92 KVTRMEFLPYHFLLATASEEGYLSWLDT---------SIGKIVS---DFS-------A-KKGKLSVMTQNPYN---ACIC  148 (315)
Q Consensus        92 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~---------~~~~~~~---~~~-------~-~~~~v~~~~~~p~~---~~l~  148 (315)
                      .|..+..++.|..++-.+.+|-+.++=.         +.|+.+.   ++.       . ..-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4667788899999888888886554421         2232211   111       0 11125567899976   4777


Q ss_pred             EEcCCCeEEEEcCCCCcce
Q psy9936         149 LGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~  167 (315)
                      .-..|..|++||+...+.+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7778999999998765443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.23  E-value=3.9  Score=33.39  Aligned_cols=204  Identities=10%  Similarity=0.029  Sum_probs=122.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE-ec---CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE-MN---VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~   85 (315)
                      ......+..-|||..-++-+.. .|.-.|-++.+.... +.   .........|.+.|++-.+++.|.---.|.....+.
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~  181 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS  181 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence            4556677778888766654433 455566555543221 21   334677888999999888887543333343333333


Q ss_pred             Eeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          86 CLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS---AKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        86 ~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      .+..  ....+.|+..|+|..-++.-.+..|-..|..++... .+.   ........+--+|.|+.-++....+.+..||
T Consensus       182 vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfd  260 (353)
T COG4257         182 VFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFD  260 (353)
T ss_pred             eeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeC
Confidence            3332  245678889999988777767777888887766221 221   1112234455577888777877778888888


Q ss_pred             CCCCcce-eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         161 PTVQKPL-ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       161 ~~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                      ..+.... ..+.+......++.....++.-.+--..|.|.-+|-++  ..+..+....
T Consensus       261 Ps~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet--a~ftv~p~pr  316 (353)
T COG4257         261 PSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET--ARFTVLPIPR  316 (353)
T ss_pred             cccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc--ceEEEecCCC
Confidence            7654322 22334444556666666666555555556777777776  3445554443

>PLN02193 nitrile-specifier protein

Probab=93.22  E-value=6.2  Score=35.61  Aligned_cols=183  Identities=11%  Similarity=0.005  Sum_probs=89.3

Q ss_pred             CCCEEEEEcCC-------CeEEEEEccCceEEEEecC---CC--ceeEEEEeecCcEEEEEe-C-----CeEEEEeCCCC
Q psy9936          21 NGRHLLLGGKR-------GHVAAFDWVRKTLACEMNV---ME--EVYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGI   82 (315)
Q Consensus        21 ~~~~l~~~~~d-------g~i~v~~~~~~~~~~~~~~---~~--~v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~   82 (315)
                      ++..++.|+.+       ..+.+||+.+.+.......   +.  ........-++.+++.+. +     +.+..||+...
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            34455566642       2477888877665432111   11  111112223556666554 2     46888998776


Q ss_pred             EEEEeecC----Cce-EEEEEcCCCceEEEEcCCC-----eEEEEEccCCeEEEEec-----cCCCCeEEEEEcCCCCEE
Q psy9936          83 ELHCLKVL----NKV-TRMEFLPYHFLLATASEEG-----YLSWLDTSIGKIVSDFS-----AKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        83 ~~~~~~~~----~~v-~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l  147 (315)
                      ....+...    .+. ...+..-++++++.|+.++     .+..||+.+.+-...-.     ........+.  -+++++
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiy  332 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVW  332 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEE
Confidence            65554321    111 1111223456666776543     46788887665332110     0111111122  256777


Q ss_pred             EEEcCC----CeEEEEcCCCCcceeEeec---c-cccEEEEEECCCCCEEEEeeCC--------------CcEEEEEccC
Q psy9936         148 CLGHRN----GTVTMWSPTVQKPLASLLC---H-KAGIQSVAVNHTGTYMATSAGD--------------SQLRIWDVRN  205 (315)
Q Consensus       148 ~~~~~d----~~i~i~d~~~~~~~~~~~~---~-~~~i~~~~~sp~g~~l~~~~~d--------------~~i~iwd~~~  205 (315)
                      +.++.+    ..+.+||+.+.+....-..   . .....++ ..-++++++.|+.+              +.+.+||+.+
T Consensus       333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t  411 (470)
T PLN02193        333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET  411 (470)
T ss_pred             EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence            777655    4688999887653221110   1 1111122 22356677777743              2477888776


Q ss_pred             C
Q psy9936         206 L  206 (315)
Q Consensus       206 ~  206 (315)
                      .
T Consensus       412 ~  412 (470)
T PLN02193        412 L  412 (470)
T ss_pred             C
Confidence            4

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.13  E-value=4.5  Score=33.76  Aligned_cols=180  Identities=13%  Similarity=0.099  Sum_probs=99.0

Q ss_pred             cEEEEEEcCCCCEEEE--EcC----------CCeEEEEEccCceEEEEecCC-------CceeEEEEeec-C----cEEE
Q psy9936          12 GIYRMNYTKNGRHLLL--GGK----------RGHVAAFDWVRKTLACEMNVM-------EEVYDIKWLHL-E----TMFA   67 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~--~~~----------dg~i~v~~~~~~~~~~~~~~~-------~~v~~~~~~~~-~----~~l~   67 (315)
                      .|..+...+++++-+.  |..          .-.|.+||+.+++.++.+..+       .....+.+... +    .++.
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            4677778777765543  210          127899999999988877632       24566766652 1    3444


Q ss_pred             EEe--CCeEEEEeCCCCEEEEeec---------------------CCceEEEEEcC---CCceEEEEcCCCeEEEEEccC
Q psy9936          68 VAQ--KDWVYIYDNQGIELHCLKV---------------------LNKVTRMEFLP---YHFLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        68 ~~~--~~~i~i~~~~~~~~~~~~~---------------------~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~  121 (315)
                      .+.  .+.|.++|+.......+.+                     ...+..++.+|   ++++|+.....+ -++|.+.+
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence            443  4589999986544433321                     13355566655   455565554332 12232221


Q ss_pred             -----C---------eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc---ceeEee-c-c-cccEEEEE
Q psy9936         122 -----G---------KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK---PLASLL-C-H-KAGIQSVA  181 (315)
Q Consensus       122 -----~---------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~-~-~-~~~i~~~~  181 (315)
                           .         ..+..+-...+....++++++|.++++--..+.|..|+..+.-   .+..+. . . -.++.++.
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~  240 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK  240 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence                 1         0112221112345678899999999888899999999988621   222222 1 1 35778999


Q ss_pred             ECC--CCCEEEEe
Q psy9936         182 VNH--TGTYMATS  192 (315)
Q Consensus       182 ~sp--~g~~l~~~  192 (315)
                      +.+  +|.+.+.+
T Consensus       241 i~~~~~g~L~v~s  253 (287)
T PF03022_consen  241 IDPEGDGYLWVLS  253 (287)
T ss_dssp             E-T--TS-EEEEE
T ss_pred             eccccCceEEEEE
Confidence            998  77655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=93.03  E-value=4.9  Score=33.86  Aligned_cols=218  Identities=12%  Similarity=0.053  Sum_probs=106.1

Q ss_pred             CCCEEEEEcCCCeEEEEEccCc-eEEEEecCCCceeEEEEeecCcEEEEEeCCe--EEEEeCCCCE--------------
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRK-TLACEMNVMEEVYDIKWLHLETMFAVAQKDW--VYIYDNQGIE--------------   83 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--i~i~~~~~~~--------------   83 (315)
                      ++++|+.|+.+| +++.+.... .....+-...+|+++...+..++|++-+++.  ++++++..-.              
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            346899999998 666666542 2233333556899999999888777776655  9999972111              


Q ss_pred             ---EEEeecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCC----eEEEEe---c-cCCCCeEEEEEcCC--CCEEEE
Q psy9936          84 ---LHCLKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIG----KIVSDF---S-AKKGKLSVMTQNPY--NACICL  149 (315)
Q Consensus        84 ---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~----~~~~~~---~-~~~~~v~~~~~~p~--~~~l~~  149 (315)
                         ...+.+............ ...++++....+|.+|.....    .....+   . ....++..+..+++  ...+..
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv  170 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI  170 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence               112222232222222222 123344445567777643322    111110   0 11223444443443  446666


Q ss_pred             EcCCCeEEEEcCCC--Ccc----eeE-eeccc-ccEEEEEECCCCCEEEEeeCCCcEEEEEccC-CCCCeeEeccCCCce
Q psy9936         150 GHRNGTVTMWSPTV--QKP----LAS-LLCHK-AGIQSVAVNHTGTYMATSAGDSQLRIWDVRN-LEGPLNTFRTRTPIN  220 (315)
Q Consensus       150 ~~~d~~i~i~d~~~--~~~----~~~-~~~~~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~  220 (315)
                      |+..+...++++..  ...    +.. ..... .++..... +++.+|++ - |....+-|... .......+.....+.
T Consensus       171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w~~~p~  247 (302)
T smart00036      171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHWEFMPE  247 (302)
T ss_pred             EEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-E-CcEEEEEeCCCCccccceEEEcCCccc
Confidence            66542334444432  110    000 01111 33333333 44544443 2 23344555554 212223444555667


Q ss_pred             eEEEccCCeEEEEcCCEEEecCC
Q psy9936         221 NLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       221 ~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      ++++.. ..+++-..+.|.++++
T Consensus       248 ~~~~~~-pyll~~~~~~ievr~l  269 (302)
T smart00036      248 SFAYHS-PYLLAFHDNGIEIRSI  269 (302)
T ss_pred             EEEEEC-CEEEEEcCCcEEEEEC
Confidence            777774 5666666777777766

Unpublished observations.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.85  E-value=1.1  Score=34.12  Aligned_cols=31  Identities=13%  Similarity=0.327  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCC------CEEEEEcCCCeEEEEcCCC
Q psy9936         133 GKLSVMTQNPYN------ACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus       133 ~~v~~~~~~p~~------~~l~~~~~d~~i~i~d~~~  163 (315)
                      ..+..++|||.|      -+|++...++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368899999955      2788889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.84  E-value=0.79  Score=25.19  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=27.5

Q ss_pred             CCCCEEEEEc-CCCeEEEEEccCceEEEEecCCCceeEEEE
Q psy9936          20 KNGRHLLLGG-KRGHVAAFDWVRKTLACEMNVMEEVYDIKW   59 (315)
Q Consensus        20 ~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~   59 (315)
                      |++++|+++. .++.|.++|..+++.+..+........+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            5777666544 578999999988888777765444444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.84  E-value=6  Score=34.38  Aligned_cols=192  Identities=10%  Similarity=0.081  Sum_probs=107.2

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCC---CceeEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEeecCC--ceE
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVM---EEVYDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCLKVLN--KVT   94 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~~~~~--~v~   94 (315)
                      +| .+.++..+|.|.-.|.+++..+......   ..+..-.+..+|++++...++.++.+|. ++..........  .+.
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            44 4444567888888888888866544432   2333444445888888888898999999 666665555444  111


Q ss_pred             EEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEcC--CCeEEEEcCCCCcceeE
Q psy9936          95 RMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG---KLSVMTQNPYNACICLGHR--NGTVTMWSPTVQKPLAS  169 (315)
Q Consensus        95 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~~p~~~~l~~~~~--d~~i~i~d~~~~~~~~~  169 (315)
                      ....-.++ .++.++.++.+...|..+|+..-.......   .+..--...++ .++.+..  ++.+.-.|..++.....
T Consensus       147 ~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         147 SPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence            11222223 444455788899999888877665433211   11110011223 4444544  56777778878876655


Q ss_pred             eeccc----ccEEEEEECCC-----CCEEEEeeCCCcEEEEEccCCCCCeeEeccC
Q psy9936         170 LLCHK----AGIQSVAVNHT-----GTYMATSAGDSQLRIWDVRNLEGPLNTFRTR  216 (315)
Q Consensus       170 ~~~~~----~~i~~~~~sp~-----g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  216 (315)
                      ...+.    ..+........     +.-++.++.++.+...|..++ +.+..+...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G-~~~W~~~~~  279 (370)
T COG1520         225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG-ELIWSFPAG  279 (370)
T ss_pred             eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC-ceEEEEecc
Confidence            32111    11100111111     112356667777888888888 777666653

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.76  E-value=8.4  Score=35.90  Aligned_cols=165  Identities=13%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             cEEEeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE--Eec--CCCc-eeEEEEeec------Cc-EEEEEe
Q psy9936           3 KQFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC--EMN--VMEE-VYDIKWLHL------ET-MFAVAQ   70 (315)
Q Consensus         3 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--~~~--~~~~-v~~~~~~~~------~~-~l~~~~   70 (315)
                      +.+++.+++.|..+.|.++++.+++.-.+|.|.+||...+....  .+.  +... +++ .|.++      .. +++.+.
T Consensus       122 ~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~  200 (670)
T PF10395_consen  122 NEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQ  200 (670)
T ss_pred             ceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEE
Confidence            45677778999999999999999999999999999984333221  222  1111 122 33332      22 333333


Q ss_pred             -C---CeEEEEeC--CCCEEEEee----cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC-----C-CC
Q psy9936          71 -K---DWVYIYDN--QGIELHCLK----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK-----K-GK  134 (315)
Q Consensus        71 -~---~~i~i~~~--~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~-~~  134 (315)
                       .   -..+++.+  ++..+..+.    +........|..+...|+.- .+++|.+|++.+-+..+++...     . ..
T Consensus       201 ~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~  279 (670)
T PF10395_consen  201 LSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDD  279 (670)
T ss_pred             cCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccccc
Confidence             2   25777777  443333332    12223333333332233333 6779999999877666655422     1 22


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL  171 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  171 (315)
                      +.++. .|..+.++.+ .++.|.+.|+.-...+.++.
T Consensus       280 ~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  280 LVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             ceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence            33443 2344444433 35789999987655554444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.64  E-value=10  Score=36.61  Aligned_cols=154  Identities=13%  Similarity=0.048  Sum_probs=95.3

Q ss_pred             cCCCceeEEEEe---e----cCcEEEEEeCCeEEEEeCC----------------CCEEEEeec----CCceEEEEEcCC
Q psy9936          49 NVMEEVYDIKWL---H----LETMFAVAQKDWVYIYDNQ----------------GIELHCLKV----LNKVTRMEFLPY  101 (315)
Q Consensus        49 ~~~~~v~~~~~~---~----~~~~l~~~~~~~i~i~~~~----------------~~~~~~~~~----~~~v~~~~~~~~  101 (315)
                      ....+|..|+|.   .    ..++|++-....+.|+...                ...+..+.+    ..+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            355689999998   2    2357877777888888721                112223332    246788999985


Q ss_pred             -CceEEEEcCCCeEEEEEccCC-----eEEEEeccCCC----------CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936         102 -HFLLATASEEGYLSWLDTSIG-----KIVSDFSAKKG----------KLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus       102 -~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~----------~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                       ...||+....|...||++...     ........+.+          .-..+.|.++.+.|++++. ..+.++|+++..
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~  235 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW  235 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence             468999999999999999211     11111111112          2336789888888887765 568999999775


Q ss_pred             ceeEe--ecccccEEEEEECCC--CCEEEEeeCCCcEEEEEccC
Q psy9936         166 PLASL--LCHKAGIQSVAVNHT--GTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       166 ~~~~~--~~~~~~i~~~~~sp~--g~~l~~~~~d~~i~iwd~~~  205 (315)
                      ....+  ......|..+.-+|.  +..++..+  ..|...++..
T Consensus       236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             ccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            53212  224467888888887  33222222  3466666655

These proteins are found in fungi.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.62  E-value=0.65  Score=25.20  Aligned_cols=29  Identities=17%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             ccccEEEEEECCCCCEEEEeeC-C--CcEEEE
Q psy9936         173 HKAGIQSVAVNHTGTYMATSAG-D--SQLRIW  201 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~~-d--~~i~iw  201 (315)
                      .........|||||++|+.++. +  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4456678999999998876654 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.62  E-value=5.2  Score=33.21  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             CeEEEEeCCCCEEEEeecC--CceEEEEEcCCCceEEEEc------CCCeEEEEEccCCeEEEEecc-----CCCCeEEE
Q psy9936          72 DWVYIYDNQGIELHCLKVL--NKVTRMEFLPYHFLLATAS------EEGYLSWLDTSIGKIVSDFSA-----KKGKLSVM  138 (315)
Q Consensus        72 ~~i~i~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~-----~~~~v~~~  138 (315)
                      ..|++||..+.....+...  +.|..+.|..+..+++.|.      ....+..||+.+.... .+..     -++++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence            3688899887776665543  7789999986666666663      3456888998765432 2322     23677777


Q ss_pred             EEcC-CCC-EEEEEc---CCCeEEEEcCCCCcceeE-eecccccEEEEEEC
Q psy9936         139 TQNP-YNA-CICLGH---RNGTVTMWSPTVQKPLAS-LLCHKAGIQSVAVN  183 (315)
Q Consensus       139 ~~~p-~~~-~l~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s  183 (315)
                      .+.. |+. +.+.|.   .+..|..||=.+...+.. .......|..+.+-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence            7643 333 443332   234677777555444433 22223455555443

>KOG3616|consensus

Probab=92.25  E-value=1.8  Score=40.36  Aligned_cols=71  Identities=7%  Similarity=0.159  Sum_probs=46.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~   81 (315)
                      ..-++++.-+|.|+.++.+..||.|++|++...+.........+-..+.|...|- +...+|..+.-|.-+|
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl-~~~tsdrr~la~~~dg   84 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGL-VTATSDRRALAWKEDG   84 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccce-EEEeccchhheeeccC
Confidence            4567888889999999999999999999987655432222233444555655443 3333455555665544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.05  E-value=6.1  Score=32.67  Aligned_cols=147  Identities=13%  Similarity=0.060  Sum_probs=91.8

Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      +....-+..+.++  +++.+.+..+.-++++|+.+......+.  ...+...+  |.-.|++..++..|.-+-++|+.+.
T Consensus        83 i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdp  158 (370)
T COG5276          83 INARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDP  158 (370)
T ss_pred             EehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCC
Confidence            3334555666666  4567777788889999998764322221  11233344  4446889988886777778888764


Q ss_pred             c---ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee--EeccCCCceeEEEccCCeEEEEcCCEEE
Q psy9936         165 K---PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN--TFRTRTPINNLAFSQRGLLATSRGNIVE  239 (315)
Q Consensus       165 ~---~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~~~~~~~~i~  239 (315)
                      +   ....+......-..++.|  |++-..+..|+-+.+-|+.+...|..  .......+.++..+++-.+++-.+.-+-
T Consensus       159 ssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvl  236 (370)
T COG5276         159 SSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVL  236 (370)
T ss_pred             CCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceE
Confidence            3   222333333334566665  67777888899999999987634433  2333336888888888766665554443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.04  E-value=1.4  Score=40.56  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             CCCceEEEEcCCCeEEEEEccC----CeEEEEe--cc--------------------CCCCeEEEEEcC----CCCEEEE
Q psy9936         100 PYHFLLATASEEGYLSWLDTSI----GKIVSDF--SA--------------------KKGKLSVMTQNP----YNACICL  149 (315)
Q Consensus       100 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~--~~--------------------~~~~v~~~~~~p----~~~~l~~  149 (315)
                      ++...++.+..||.+.......    +......  ..                    ..+.+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888999988887664    2111111  00                    112355566666    6679999


Q ss_pred             EcCCCeEEEEcCCCCcceeEee
Q psy9936         150 GHRNGTVTMWSPTVQKPLASLL  171 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~~~~~~  171 (315)
                      .+.|+.+++||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999998866553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1916|consensus

Probab=90.98  E-value=0.32  Score=45.76  Aligned_cols=105  Identities=17%  Similarity=0.288  Sum_probs=59.4

Q ss_pred             EcCCCceEEEEcCCCeEEEEEcc-CC----eEEEEeccCCCC--eEEEEEcCCC---------CEEEEEc-CCCeEEEEc
Q psy9936          98 FLPYHFLLATASEEGYLSWLDTS-IG----KIVSDFSAKKGK--LSVMTQNPYN---------ACICLGH-RNGTVTMWS  160 (315)
Q Consensus        98 ~~~~~~~l~~~~~d~~i~~~d~~-~~----~~~~~~~~~~~~--v~~~~~~p~~---------~~l~~~~-~d~~i~i~d  160 (315)
                      .+|||..|+.++.||.+.+|.+. +|    .+++..+.|.+.  ++.+ ++.+.         .++++++ .+..+++|.
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWA  321 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEee
Confidence            78999999999999988877653 22    344445555532  3333 33221         1334443 456788998


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCE------------EEEeeCCCcEEEEEccCC
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTY------------MATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~------------l~~~~~d~~i~iwd~~~~  206 (315)
                      ....+++  +......|..+. -++|..            ++.-+-++.|.+|.-+..
T Consensus       322 ~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a  376 (1283)
T KOG1916|consen  322 EAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKA  376 (1283)
T ss_pred             ccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchh
Confidence            7777666  222233444444 333331            334456778888865543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.75  E-value=11  Score=33.24  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=49.3

Q ss_pred             ccEEEeeCCCcEEEEEEcCCC-----CEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEE
Q psy9936           2 TKQFDLDLQFGIYRMNYTKNG-----RHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVY   75 (315)
Q Consensus         2 ~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~   75 (315)
                      +.+|+..++.....++.-|=|     .+|++-+.||.+.+|+-+.......+...--.-.+.|.+....|++++ +..+.
T Consensus       120 ~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~  199 (418)
T PF14727_consen  120 ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLE  199 (418)
T ss_pred             EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEE
Confidence            456666676666666665522     478888999999999976655444444322233467777655555554 56777


Q ss_pred             EEe
Q psy9936          76 IYD   78 (315)
Q Consensus        76 i~~   78 (315)
                      -|.
T Consensus       200 ~Yk  202 (418)
T PF14727_consen  200 CYK  202 (418)
T ss_pred             Eec
Confidence            775

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.74  E-value=6.3  Score=37.08  Aligned_cols=107  Identities=13%  Similarity=0.083  Sum_probs=69.1

Q ss_pred             EEEEEEcC--CCCEEEEEcCCCeEEEEEccC-------c-------------eEEEEecCCCceeEEEEe--ecCcEEEE
Q psy9936          13 IYRMNYTK--NGRHLLLGGKRGHVAAFDWVR-------K-------------TLACEMNVMEEVYDIKWL--HLETMFAV   68 (315)
Q Consensus        13 v~~~~~s~--~~~~l~~~~~dg~i~v~~~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~~   68 (315)
                      |+.|....  +...|+.+..||.|.+|..++       .             ++...+.....+++++++  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444433  345788889999999996531       1             012333455678999998  67888888


Q ss_pred             EeCC-eEEEE--eCC-CCEE--EEeecCCceEEEEEcCCC---c---eEEEEcCCCeEEEEEc
Q psy9936          69 AQKD-WVYIY--DNQ-GIEL--HCLKVLNKVTRMEFLPYH---F---LLATASEEGYLSWLDT  119 (315)
Q Consensus        69 ~~~~-~i~i~--~~~-~~~~--~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~~~d~  119 (315)
                      ++++ .|.||  ... .+..  ....+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8754 55555  442 1111  122345678888887753   2   7888889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.52  E-value=3.7  Score=27.34  Aligned_cols=65  Identities=12%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             EEEEEcCC-CCEEEEEcCC-----------------CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEe--eCC
Q psy9936         136 SVMTQNPY-NACICLGHRN-----------------GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATS--AGD  195 (315)
Q Consensus       136 ~~~~~~p~-~~~l~~~~~d-----------------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~--~~d  195 (315)
                      +.+++.++ |...++-+..                 |.+.-||..+++....+.+-.-+ +.|+++||+.+++.+  ..-
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fp-NGVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFP-NGVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSE-EEEEE-TTSSEEEEEEGGGT
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCcc-CeEEEcCCCCEEEEEeccCc


Q ss_pred             CcEEEE
Q psy9936         196 SQLRIW  201 (315)
Q Consensus       196 ~~i~iw  201 (315)
                      ...+.|
T Consensus        80 Ri~ryw   85 (89)
T PF03088_consen   80 RILRYW   85 (89)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.38  E-value=6.2  Score=31.94  Aligned_cols=137  Identities=9%  Similarity=-0.001  Sum_probs=76.3

Q ss_pred             EEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeC----CeEEEEeCCC----CEEEE----eecCCceEEEEEcC
Q psy9936          34 VAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQK----DWVYIYDNQG----IELHC----LKVLNKVTRMEFLP  100 (315)
Q Consensus        34 i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----~~i~i~~~~~----~~~~~----~~~~~~v~~~~~~~  100 (315)
                      -.+||+.+++.....- ..--+.+-.+.+||++|.+|++    ..+++++...    .....    +.....=-+..-.|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            4588988876543211 2222333467889999998863    3688888633    11111    11111122344567


Q ss_pred             CCceEEEEcCCCe-EEEEEccC--CeEEEE--ecc-----CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEe
Q psy9936         101 YHFLLATASEEGY-LSWLDTSI--GKIVSD--FSA-----KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASL  170 (315)
Q Consensus       101 ~~~~l~~~~~d~~-i~~~d~~~--~~~~~~--~~~-----~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~  170 (315)
                      ||+.|+.|+.... ..+|.-..  ......  +..     ....--.+...|+|++|+.+..+  -.|||..+++.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence            8999998887643 44454321  111111  110     11112235668999999888765  456788877666666


Q ss_pred             ec
Q psy9936         171 LC  172 (315)
Q Consensus       171 ~~  172 (315)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            53

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02193 nitrile-specifier protein

Probab=90.18  E-value=14  Score=33.40  Aligned_cols=143  Identities=8%  Similarity=0.015  Sum_probs=73.6

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCceEEEEecC---CCc-eeEEEEeecCcEEEEEe-C-----CeEEEEeCCCCEEE
Q psy9936          21 NGRHLLLGGKR-----GHVAAFDWVRKTLACEMNV---MEE-VYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGIELH   85 (315)
Q Consensus        21 ~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~---~~~-v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~   85 (315)
                      ++.+++.|+.+     ..+.+||+.+.+.......   ..+ ....+..-++++++.+. +     ..+..||+......
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            44555666654     3578888887765442221   111 11122223556666554 2     35778888766555


Q ss_pred             EeecCC-----c-eEEEEEcCCCceEEEEcCC----CeEEEEEccCCeEEEEecc---CCCC-eEEEEEcCCCCEEEEEc
Q psy9936          86 CLKVLN-----K-VTRMEFLPYHFLLATASEE----GYLSWLDTSIGKIVSDFSA---KKGK-LSVMTQNPYNACICLGH  151 (315)
Q Consensus        86 ~~~~~~-----~-v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~---~~~~-v~~~~~~p~~~~l~~~~  151 (315)
                      .+....     . -..+. .-++++++.++.+    ..+.+||+.+.+-...-..   .... ..++ ..-++++++.|+
T Consensus       308 ~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG  385 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGG  385 (470)
T ss_pred             eCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECC
Confidence            443211     1 11122 2256677777655    3589999987754332111   1111 1122 223566777777


Q ss_pred             CC--------------CeEEEEcCCCCc
Q psy9936         152 RN--------------GTVTMWSPTVQK  165 (315)
Q Consensus       152 ~d--------------~~i~i~d~~~~~  165 (315)
                      ..              ..+.+||+.+.+
T Consensus       386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        386 EIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             ccCCccccccCccceeccEEEEEcCcCE
Confidence            53              247788877654

>KOG1900|consensus

Probab=90.16  E-value=6.7  Score=39.06  Aligned_cols=133  Identities=11%  Similarity=0.109  Sum_probs=80.1

Q ss_pred             CCCeEEEEEccCceEEEEec-CCCceeEEEEe--------ec-CcEEEEEeCCeEEEEeCC-----CCEE-----EEee-
Q psy9936          30 KRGHVAAFDWVRKTLACEMN-VMEEVYDIKWL--------HL-ETMFAVAQKDWVYIYDNQ-----GIEL-----HCLK-   88 (315)
Q Consensus        30 ~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~--------~~-~~~l~~~~~~~i~i~~~~-----~~~~-----~~~~-   88 (315)
                      .|..+.+|+.+++.....+. ....|..+..-        |. ..+|+.+.--.|.++-+.     +..-     ..+. 
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            47789999999866555554 33344444322        21 345666666666666441     1110     1111 


Q ss_pred             cCCceEEEEEcCCCceEEEEcCCCeEEE--EEccCC---e-E----------------EEEec-cCCCCeEEEEEcCCCC
Q psy9936          89 VLNKVTRMEFLPYHFLLATASEEGYLSW--LDTSIG---K-I----------------VSDFS-AKKGKLSVMTQNPYNA  145 (315)
Q Consensus        89 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~--~d~~~~---~-~----------------~~~~~-~~~~~v~~~~~~p~~~  145 (315)
                      ....|.++....+|+.|++|- ||.++=  |....+   + +                +-.+. .+..+|..++.....+
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            235688999888888776654 454331  222221   1 0                11122 4566899999988888


Q ss_pred             EEEEEcCCCeEEEEcCCC
Q psy9936         146 CICLGHRNGTVTMWSPTV  163 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~  163 (315)
                      .+++-+..|+|++||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            999999999999999875

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.72  E-value=2.1  Score=37.48  Aligned_cols=149  Identities=12%  Similarity=0.080  Sum_probs=82.0

Q ss_pred             CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE-Ee-ccCCCC----eE-EEEEcCCCCEEEEEcCCCeEEEE-cCC
Q psy9936          91 NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS-DF-SAKKGK----LS-VMTQNPYNACICLGHRNGTVTMW-SPT  162 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~-~~~~~~----v~-~~~~~p~~~~l~~~~~d~~i~i~-d~~  162 (315)
                      ..+..+-..|+|+.++.-+. ..+.++++.+..... .+ ....+.    |+ .+..-..|.-+++++.||.|.-| |.+
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr  299 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR  299 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence            56677888999998887765 678899887543211 11 111111    11 11112345567788888888766 554


Q ss_pred             CC-cc----eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEE-cCC
Q psy9936         163 VQ-KP----LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATS-RGN  236 (315)
Q Consensus       163 ~~-~~----~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~-~~~  236 (315)
                      .+ .+    ++.++-...++.-+.-..+.+-+++-+..|++.++..... +++-.-..-..+.-+++||++-++.+ ..|
T Consensus       300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~-~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~g  378 (733)
T COG4590         300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE-KLLLFERAYQAPQLVAMSPNQAYLLSEDQG  378 (733)
T ss_pred             cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC-cceehhhhhcCcceeeeCcccchheeecCC
Confidence            32 21    1112211233332222222345677778888887765543 33332233336778899999865554 456


Q ss_pred             EEEec
Q psy9936         237 IVEFL  241 (315)
Q Consensus       237 ~i~~~  241 (315)
                      .|+..
T Consensus       379 ki~~~  383 (733)
T COG4590         379 KIRLA  383 (733)
T ss_pred             ceEEE
Confidence            77743

>PLN02153 epithiospecifier protein

Probab=89.71  E-value=12  Score=32.04  Aligned_cols=143  Identities=8%  Similarity=0.043  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCceEEEEecC-----C-CceeEEEEeecCcEEEEEe-C-----------CeEEEE
Q psy9936          21 NGRHLLLGGKR-----GHVAAFDWVRKTLACEMNV-----M-EEVYDIKWLHLETMFAVAQ-K-----------DWVYIY   77 (315)
Q Consensus        21 ~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~-----~-~~v~~~~~~~~~~~l~~~~-~-----------~~i~i~   77 (315)
                      ++++++.|+.+     ..+.+||..+.+....-..     . ......+...++++++.|+ +           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45566666643     3577888877665432111     1 1112222233566666554 2           247788


Q ss_pred             eCCCCEEEEeecCC-----c-eEEEEEcCCCceEEEEcCC-------------CeEEEEEccCCeEEEEecc---CCCC-
Q psy9936          78 DNQGIELHCLKVLN-----K-VTRMEFLPYHFLLATASEE-------------GYLSWLDTSIGKIVSDFSA---KKGK-  134 (315)
Q Consensus        78 ~~~~~~~~~~~~~~-----~-v~~~~~~~~~~~l~~~~~d-------------~~i~~~d~~~~~~~~~~~~---~~~~-  134 (315)
                      |........+....     . -.+++ ..++++++.++.+             ..+.+||+.+.+-...-..   .... 
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~  243 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS  243 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence            88766555443221     0 11222 2345665655432             3588899887654332110   1111 


Q ss_pred             eEEEEEcCCCCEEEEEcCC--------------CeEEEEcCCCCc
Q psy9936         135 LSVMTQNPYNACICLGHRN--------------GTVTMWSPTVQK  165 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d--------------~~i~i~d~~~~~  165 (315)
                      ..++ ...++.+++.|+..              ..+..||+.+.+
T Consensus       244 ~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        244 VFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             eeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence            1122 22356777777742              257788877653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.55  E-value=13  Score=31.98  Aligned_cols=39  Identities=18%  Similarity=-0.006  Sum_probs=20.3

Q ss_pred             CeEEEEeCCCCEEEEeecCC--c-eEEEEEcCCCceEEEEcC
Q psy9936          72 DWVYIYDNQGIELHCLKVLN--K-VTRMEFLPYHFLLATASE  110 (315)
Q Consensus        72 ~~i~i~~~~~~~~~~~~~~~--~-v~~~~~~~~~~~l~~~~~  110 (315)
                      +.+..||........+....  + ........++++++.|+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  209 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE  209 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence            46788888666555443211  1 111222335677777764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.23  E-value=2.4  Score=39.03  Aligned_cols=36  Identities=33%  Similarity=0.438  Sum_probs=27.1

Q ss_pred             cEEEEEECC----CCCEEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         176 GIQSVAVNH----TGTYMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       176 ~i~~~~~sp----~g~~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                      .+..+++++    +..+|++.+.|+.+|+||+.++ .++..
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~-~~~~~  255 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG-QCLAT  255 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT-CEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC-eEEEE
Confidence            455666666    6779999999999999999998 66443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.13  E-value=9.5  Score=30.03  Aligned_cols=50  Identities=18%  Similarity=0.151  Sum_probs=36.6

Q ss_pred             eecCcEEEEEeCCeEEEEeCCC---CEEEEeecCCceEEEEEcCCCceEEEEc
Q psy9936          60 LHLETMFAVAQKDWVYIYDNQG---IELHCLKVLNKVTRMEFLPYHFLLATAS  109 (315)
Q Consensus        60 ~~~~~~l~~~~~~~i~i~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~  109 (315)
                      .+.+.+++++....|.+|++..   .....+...+.|..+.++..|+++++--
T Consensus        26 ~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   26 GGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             cCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence            3434455556678899999862   3344466669999999999999999874

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.91  E-value=15  Score=32.02  Aligned_cols=37  Identities=14%  Similarity=-0.056  Sum_probs=19.1

Q ss_pred             eEEEEeCCCCEEEEeecCC--c--eEEEEEcCCCceEEEEcC
Q psy9936          73 WVYIYDNQGIELHCLKVLN--K--VTRMEFLPYHFLLATASE  110 (315)
Q Consensus        73 ~i~i~~~~~~~~~~~~~~~--~--v~~~~~~~~~~~l~~~~~  110 (315)
                      .+.+||........+....  +  -.++.. .++++++.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCEEEEEeee
Confidence            5888898766555443221  1  122322 24566666653

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.87  E-value=5.5  Score=32.22  Aligned_cols=89  Identities=8%  Similarity=0.044  Sum_probs=52.4

Q ss_pred             EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-C--CeEEEEcCCC----Ccce---eEeecccccEEEEEEC
Q psy9936         114 LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-N--GTVTMWSPTV----QKPL---ASLLCHKAGIQSVAVN  183 (315)
Q Consensus       114 i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d--~~i~i~d~~~----~~~~---~~~~~~~~~i~~~~~s  183 (315)
                      -.+||+.+++....-......+.+-++-|||++|.+|+. +  ..+++++..+    ....   ..+. ...+-.++..-
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence            457998877543222122222334467799999999875 2  3588888654    1111   1111 23344456667


Q ss_pred             CCCCEEEEeeCCC-cEEEEEc
Q psy9936         184 HTGTYMATSAGDS-QLRIWDV  203 (315)
Q Consensus       184 p~g~~l~~~~~d~-~i~iwd~  203 (315)
                      |||+.|+.|+... +..+|.-
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~  147 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPP  147 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCC
Confidence            8999999988775 3555554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.61  E-value=5.8  Score=31.07  Aligned_cols=100  Identities=12%  Similarity=0.108  Sum_probs=60.9

Q ss_pred             CCCEEEEEcC--CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEE-EEeeCCCcEEEEEccCCCCCeeEeccCCCc
Q psy9936         143 YNACICLGHR--NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM-ATSAGDSQLRIWDVRNLEGPLNTFRTRTPI  219 (315)
Q Consensus       143 ~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  219 (315)
                      +|.++.+.+.  ...|++||+++++.+.+-.-....+..=-...-|.++ +..-.+|....+|.++. +++..+.....-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~-~~lg~~~y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL-EELGRFSYEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh-hhhcccccCCcc
Confidence            4556666554  4479999999998766544221111111111113322 23346788899999988 888887766666


Q ss_pred             eeEEEccCCeEEEEcCCEEEecCC
Q psy9936         220 NNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       220 ~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +.++-....+++..+..+++.-+|
T Consensus       134 WgLt~d~~~LimsdGsatL~frdP  157 (262)
T COG3823         134 WGLTSDDKNLIMSDGSATLQFRDP  157 (262)
T ss_pred             eeeecCCcceEeeCCceEEEecCH
Confidence            666665555566666677776665

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=88.50  E-value=4.3  Score=38.96  Aligned_cols=76  Identities=11%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCCcceeE-eecccccEEEEEECCCCCEEEE-eeCCC-----cEEEEEccCCCCCeeEeccCC-CceeEE
Q psy9936         152 RNGTVTMWSPTVQKPLAS-LLCHKAGIQSVAVNHTGTYMAT-SAGDS-----QLRIWDVRNLEGPLNTFRTRT-PINNLA  223 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~~-~~~d~-----~i~iwd~~~~~~~~~~~~~~~-~v~~~~  223 (315)
                      ..+.|.+-|.....+... +. +..+|.+.+|||||++||. .+..+     .|++-++.+...-+-.+.... .|..-.
T Consensus       327 ~~~~L~~~D~dG~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwr  405 (912)
T TIGR02171       327 VTGNLAYIDYTKGASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWR  405 (912)
T ss_pred             CCCeEEEEecCCCCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceE
Confidence            345888888886655443 44 6889999999999999988 44443     488889987534444444443 466666


Q ss_pred             EccCC
Q psy9936         224 FSQRG  228 (315)
Q Consensus       224 ~s~~g  228 (315)
                      ..++|
T Consensus       406 v~e~g  410 (912)
T TIGR02171       406 VLENG  410 (912)
T ss_pred             ecCCC
Confidence            66766

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.44  E-value=16  Score=31.76  Aligned_cols=178  Identities=17%  Similarity=0.222  Sum_probs=97.7

Q ss_pred             CcEEEEEe-CCeEEEEeCCCCEEEEeecCCceEEEEEc----CCCce--EEEEcC-C---CeEEEEEcc--CCeEEEEec
Q psy9936          63 ETMFAVAQ-KDWVYIYDNQGIELHCLKVLNKVTRMEFL----PYHFL--LATASE-E---GYLSWLDTS--IGKIVSDFS  129 (315)
Q Consensus        63 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---~~i~~~d~~--~~~~~~~~~  129 (315)
                      ..+++... ++-+.+||++++.+..+.. +.++.+..-    -+|+.  |+.++. +   .+|++|.+.  ++. +..+.
T Consensus        68 kSlIigTdK~~GL~VYdL~Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~  145 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLDGKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVT  145 (381)
T ss_dssp             G-EEEEEETTTEEEEEETTS-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-C
T ss_pred             cceEEEEeCCCCEEEEcCCCcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcC
Confidence            33444444 6789999999999877652 333333321    13432  444442 2   468999775  343 33332


Q ss_pred             c-------CCCCeEEEEE--cC-CCC-EEEEEcCCCeEEEEcCC---CC----cceeEeecccccEEEEEECCCCCEEEE
Q psy9936         130 A-------KKGKLSVMTQ--NP-YNA-CICLGHRNGTVTMWSPT---VQ----KPLASLLCHKAGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       130 ~-------~~~~v~~~~~--~p-~~~-~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~sp~g~~l~~  191 (315)
                      .       ....++.+|+  +| +|. +.++...+|.+..|-+.   .+    +.+++|.. .+.+..+.......+|+.
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYv  224 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYV  224 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEE
Confidence            1       1123667776  44 455 55667788988887764   22    35667763 457888888888889999


Q ss_pred             eeCCCcEEEEEccCCC--C--CeeEeccC---CCceeEEEc--cCC--eEEEEc--CCEEEecCC
Q psy9936         192 SAGDSQLRIWDVRNLE--G--PLNTFRTR---TPINNLAFS--QRG--LLATSR--GNIVEFLKP  243 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~~--~--~~~~~~~~---~~v~~~~~s--~~g--~~~~~~--~~~i~~~~~  243 (315)
                      +-++--|.-|+.....  .  .+......   ..+-.++.-  ++|  .+++|.  +++..+|+.
T Consensus       225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  225 GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            9999778777776321  1  12122221   246666664  333  566653  666776653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-05
2h9l_A	329	Wdr5delta23 Length = 329		4e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-04

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 142 PYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW 201
           PY A +     +G + +W+   Q    +   H++ +  ++++  G Y+AT   D +L IW
Sbjct: 185 PYFASVGW---DGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 202 DVRNLEGPLNTFRTRTPINNLAFS---QRGLLATSRG----NIVEFLKPP--EINFEPRR 252
           D+ NL  P   F   + IN +AF+   Q   + T +G    N++   K P   I  EP  
Sbjct: 241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPIT 300
Query: 253 KANKAGG 259
           KA    G
Sbjct: 301 KAEGQKG 307

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 203
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 204 VKFSPNGKYILAATLDNTLKL 224

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 193
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 194 VKFSPNGKYILAATLDNTLKL 214

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 219
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 220 VKFSPNGKYILAATLDNTLKL 240

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 197
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 198 VKFSPNGKYILAATLDNTLKL 218

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 197
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 198 VKFSPNGKYILAATLDNTLKL 218

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 221
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 222 VKFSPNGKYILAATLDNTLKL 242

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 214
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 215 VKFSPNGKYILAATLDNTLKL 235

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 198
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 199 VKFSPNGKYILAATLDNTLKL 219

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 196
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 197 VKFSPNGKYILAATLDNTLKL 217

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 202
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 203 VKFSPNGKYILAATLDNTLKL 223

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 203
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 204 VKFSPNGKYILAATLDNTLKL 224

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
            K L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 203
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 204 VKFSPNGKYILAATLDNTLKL 224

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
              L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
           + FS  G  +LA +  N ++ 
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
           LL +AS++  L   D S GK +         +     NP +  I  G  + +V +W    
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
              L +L  H   + +V  N  G+ + +S+ D   RIWD  + +  L T       P++ 
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGN 236
           + FS  G  +LA +  N
Sbjct: 201 VKFSPNGKYILAATLDN 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.78
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.75
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.66
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.58
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.52
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.51
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.5
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.44
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.38
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.32
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.28
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.27
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.24
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.24
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.13
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.07
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.03
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.99
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.99
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.98
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.97
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.96
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.92
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.92
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.91
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.9
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.89
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.89
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.89
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.85
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.85
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.84
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.83
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.8
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.78
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.73
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.69
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.66
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.66
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.63
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.61
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.54
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.43
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.4
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.36
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.32
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.29
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.2
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.15
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.11
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.93
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.88
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.8
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.79
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.78
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.72
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.72
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.69
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.61
3ott_A	758	Two-component system sensor histidine kinase; beta	97.61
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.57
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.56
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.55
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.55
3ott_A	758	Two-component system sensor histidine kinase; beta	97.49
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.45
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.44
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.44
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.43
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.39
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.23
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.2
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.83
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.79
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.75
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.38
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.11
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.23
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.54
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.39
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.36
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.16
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.5
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.35
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.8
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	88.51
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	83.18
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	83.03
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.69
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	82.66
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.53

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6e-44  Score=303.98  Aligned_cols=262  Identities=16%  Similarity=0.198  Sum_probs=231.2

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      ...+.. ..+|.+++|+|++++|++++.||.|++||+.+++....+. |...|.+++|+|++++|++++ |+.|++|++.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~  127 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence            345666 7899999999999999999999999999999998888777 788899999999999999887 8999999985


Q ss_pred             CC-----EEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC
Q psy9936          81 GI-----ELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        81 ~~-----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      ..     .... ..|...|.++.|++++. +++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|+
T Consensus       128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~  206 (340)
T 1got_B          128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence            42     2222 34668999999998875 88999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCeEE
Q psy9936         155 TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGLLA  231 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~  231 (315)
                      .|++||++++.++..+.+|...|++++|+|++++|++|+.|++|++||+++. ..+..+..+.   +|.+++|+|+|.++
T Consensus       207 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEE
Confidence            9999999999999999999999999999999999999999999999999987 6666665433   68999999999543


Q ss_pred             --EEcCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         232 --TSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       232 --~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                        ++.|+.|++|+.                .+++|+|++.++++|+.++.++.+
T Consensus       286 ~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence              445899999986                578999999999999999877643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-44  Score=314.41  Aligned_cols=262  Identities=16%  Similarity=0.246  Sum_probs=237.1

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      .+.. ..+|++++|+|++.+|++|+.||.|+|||+.+++....+. |...|.+++|+|++++|++++ |+.|++||+.+.
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4455 7899999999999999999999999999999999888887 889999999999999998887 899999999654


Q ss_pred             -EEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          83 -ELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        83 -~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                       .+..+ .|...|.+++|+|++.+|++++.|++|++||+.++..+..+.+|...+.++.++|++.+|++|+.|+.|++||
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence             44444 4568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCC--------------------CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-Cc
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHT--------------------GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PI  219 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~--------------------g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v  219 (315)
                      ++++++...+.+|...|.+++|+|+                    |.+|++|+.|+.|++||++++ .++..+..|. .|
T Consensus       263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v  341 (410)
T 1vyh_C          263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWV  341 (410)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCE
T ss_pred             CCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcE
Confidence            9999999999999999999999996                    679999999999999999998 8888888776 59


Q ss_pred             eeEEEccCCe--EEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhhh
Q psy9936         220 NNLAFSQRGL--LATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       220 ~~~~~s~~g~--~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      ++++|+|+|.  +.++.|+.|++|+.                ++++|+|++.++++|+.++.++.+.
T Consensus       342 ~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            9999999994  34456899999987                6789999999999999998877653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.3e-43  Score=292.37  Aligned_cols=258  Identities=13%  Similarity=0.178  Sum_probs=222.4

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      ...+.. .+.|.+++|+|++++|++++.||.|++||+.++..+..+. |..+|.+++|+|++++|++++ |+.|++||+.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            344555 7899999999999999999999999999999999888887 788999999999999999887 8999999995


Q ss_pred             -CCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeE
Q psy9936          81 -GIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNP-YNACICLGHRNGTV  156 (315)
Q Consensus        81 -~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i  156 (315)
                       +..+..+. |...|.+++|+|++.+|++++.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|+.|
T Consensus        86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v  165 (304)
T 2ynn_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (304)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence             55555554 6689999999999999999999999999999887 55667889999999999999 67899999999999


Q ss_pred             EEEcCCCCcceeEee-cccccEEEEEECC--CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--E
Q psy9936         157 TMWSPTVQKPLASLL-CHKAGIQSVAVNH--TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--L  230 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~-~~~~~i~~~~~sp--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~  230 (315)
                      ++||++++.+...+. +|...+..+.|+|  ++.+|++|+.|++|++||++++ .++..+..|. .|..++|+|++.  +
T Consensus       166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEE
Confidence            999999887766665 4668899999987  6789999999999999999998 8899998886 699999999995  3


Q ss_pred             EEEcCCEEEecCC----------------Cceeeccccc--ccccCCcch
Q psy9936         231 ATSRGNIVEFLKP----------------PEINFEPRRK--ANKAGGSVQ  262 (315)
Q Consensus       231 ~~~~~~~i~~~~~----------------~~~~~~~~~~--~~~~~~~~~  262 (315)
                      .++.|++|++|+.                .+++|+|++.  ++++|..++
T Consensus       245 s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g  294 (304)
T 2ynn_A          245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG  294 (304)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred             EEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc
Confidence            4456999999987                4677788765  466665554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.6e-43  Score=300.10  Aligned_cols=263  Identities=15%  Similarity=0.205  Sum_probs=231.4

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      ...+.. ...|++++|+|++++|++|+.||+|++||..+++....+. +...|.+++|+|++.++++++ |+.+++|++.
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~  136 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT  136 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence            445666 7899999999999999999999999999999888777766 778899999999999999987 8999999974


Q ss_pred             CC--------EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC--CCCEEEEE
Q psy9936          81 GI--------ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP--YNACICLG  150 (315)
Q Consensus        81 ~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~  150 (315)
                      ..        ......|...|.+++|+|++..|++++.|++|++||+.+++.+..+.+|...|.+++|+|  +|++|++|
T Consensus       137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg  216 (354)
T 2pbi_B          137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG  216 (354)
T ss_dssp             CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred             ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence            21        223345778999999999999999999999999999999999999999999999999988  56899999


Q ss_pred             cCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC---CceeEEEccC
Q psy9936         151 HRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQR  227 (315)
Q Consensus       151 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~  227 (315)
                      +.|+.|++||+++++++..+.+|...|++++|+|++.+|++|+.|++|++||++.. ..+..+..+.   ++.+++|+|+
T Consensus       217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~  295 (354)
T 2pbi_B          217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLS  295 (354)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTT
T ss_pred             eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999987 6666665433   5889999999


Q ss_pred             CeEE--EEcCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         228 GLLA--TSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       228 g~~~--~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      |.++  ++.|+.|++|+.                .+++|+|+++++++++.++.++.+
T Consensus       296 g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          296 GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             CCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            9544  345899999976                578999999999999999876543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-43  Score=297.43  Aligned_cols=257  Identities=16%  Similarity=0.239  Sum_probs=227.3

Q ss_pred             CCcEEEEEEcCC----CCEEEEEcCCCeEEEEEccCceEE--EEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKN----GRHLLLGGKRGHVAAFDWVRKTLA--CEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~----~~~l~~~~~dg~i~v~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      .++|.+++|+|+    +.+|++|+.|++|+||++.+++..  ..+. |...|.+++|+|++.++++++ |+.|++||+..
T Consensus        32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~  111 (321)
T 3ow8_A           32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN  111 (321)
T ss_dssp             SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            789999999985    569999999999999999877643  3444 888999999999999998887 89999999954


Q ss_pred             -CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          82 -IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        82 -~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                       ..+..+. +...+.+++|+|++++|++++.++.|++||+.+++....+..|...+.+++|+|+|++|++|+.|+.|++|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iw  191 (321)
T 3ow8_A          112 GKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF  191 (321)
T ss_dssp             TEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEE
Confidence             4444444 44778999999999999999999999999999999998898899999999999999999999999999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EEEEcCC
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LATSRGN  236 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~~  236 (315)
                      |+++++.+..+.+|..+|.+++|+|++++|++|+.|+.|++||++++ .++..+..|. .|.+++|+|++.  +.++.|+
T Consensus       192 d~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~  270 (321)
T 3ow8_A          192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK  270 (321)
T ss_dssp             ETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence            99999999999999999999999999999999999999999999998 8888888776 599999999995  3445699


Q ss_pred             EEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         237 IVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       237 ~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      +|++|++                ..++|+|++..+++++.++.++.+
T Consensus       271 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          271 SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            9999987                578999999999999998877654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-42  Score=291.81  Aligned_cols=262  Identities=13%  Similarity=0.154  Sum_probs=227.6

Q ss_pred             EEeeC-CCcEEEEEEcCCC-CEEEEEcCCCeEEEEEccC-----ceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEE
Q psy9936           5 FDLDL-QFGIYRMNYTKNG-RHLLLGGKRGHVAAFDWVR-----KTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVY   75 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~   75 (315)
                      ..+.. .++|.+++|+|++ ++|++++.|++|++|++.+     +..+..+. |...|.+++|+|++.+|++++ |++|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            34556 7899999999965 7999999999999999864     23445555 889999999999999998887 89999


Q ss_pred             EEeCCC-CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCC------CCEE
Q psy9936          76 IYDNQG-IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPY------NACI  147 (315)
Q Consensus        76 i~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~------~~~l  147 (315)
                      +||+.. ..+..+ .|...|.+++|+|++.+|++++.|++|++||++ +..+..+.+|...+.++.|+|.      +..|
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l  169 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI  169 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEE
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence            999954 444444 466899999999999999999999999999997 5677788899999999999995      4489


Q ss_pred             EEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccC
Q psy9936         148 CLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQR  227 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  227 (315)
                      ++++.|+.|++||+++.+....+.+|...|++++|+|+|++|++|+.|+.|++||+.++ +++..+..+.++.+++|+|+
T Consensus       170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~  248 (319)
T 3frx_A          170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQDEVFSLAFSPN  248 (319)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCSCEEEEEECSS
T ss_pred             EEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCcEEEEEEcCC
Confidence            99999999999999999888899999999999999999999999999999999999998 88888888889999999999


Q ss_pred             Ce-EEEEcCCEEEecCC------------------------CceeecccccccccCCcchhhhhhh
Q psy9936         228 GL-LATSRGNIVEFLKP------------------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       228 g~-~~~~~~~~i~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      +. ++++.++.+++|+.                        .+++|+|+|+++++|+.++.++.+.
T Consensus       249 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             SSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            96 44556777877643                        3689999999999999999877654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.6e-43  Score=299.39  Aligned_cols=263  Identities=14%  Similarity=0.197  Sum_probs=220.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC------CCeEEEEEccCceEE-----EEecCCCceeEEEEeecCcEEEEEeCCeEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK------RGHVAAFDWVRKTLA-----CEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~------dg~i~v~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~   78 (315)
                      +..|++++|||||++||+++.      |+.|++|+..++...     ....|...|.+++|+|++.+++++.|+.|++||
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd  121 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWE  121 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC-
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEee
Confidence            567999999999999999987      788999998776532     334578889999999999999888899999999


Q ss_pred             CCCCE------EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEc
Q psy9936          79 NQGIE------LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGH  151 (315)
Q Consensus        79 ~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~  151 (315)
                      +....      .....|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|++++|+|++. ++++++
T Consensus       122 ~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             -------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE
T ss_pred             ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec
Confidence            85432      12234678999999999999999999999999999999999999999999999999999885 789999


Q ss_pred             CCCeEEEEcCCCCcceeEee--cccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccC
Q psy9936         152 RNGTVTMWSPTVQKPLASLL--CHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQR  227 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~  227 (315)
                      .|+.|++||+++++++..+.  .|...+.+++|+|+ +.+|++|+.|+.|++||++++ +++..+..+. +|++++|+|+
T Consensus       202 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYH  280 (357)
T ss_dssp             TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSS
T ss_pred             cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCC
Confidence            99999999999988776554  46778999999998 568999999999999999998 8888888776 6999999999


Q ss_pred             C-eEE--EEcCCEEEecCC---------------Cceeecc-cccccccCCcchhhhhhhhhHHH
Q psy9936         228 G-LLA--TSRGNIVEFLKP---------------PEINFEP-RRKANKAGGSVQRAKVKKIVRET  273 (315)
Q Consensus       228 g-~~~--~~~~~~i~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  273 (315)
                      + .++  ++.|++|++|+.               ++++|+| ++.++++++.|+.++.+....+.
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            7 333  446899999987               5789998 78999999999998888755443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.4e-42  Score=288.34  Aligned_cols=237  Identities=14%  Similarity=0.227  Sum_probs=215.0

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-C
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-G   81 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~   81 (315)
                      .+.. ..+|.+++|+|++.++++++.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++ ++.|++|++. +
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~  154 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG  154 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence            4555 7889999999999999999999999999999999888876 677899999999999999987 8999999995 4


Q ss_pred             CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          82 IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        82 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      .....+. +...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus       155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd  234 (321)
T 3ow8_A          155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD  234 (321)
T ss_dssp             SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            4444443 457899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EEEEcCCE
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LATSRGNI  237 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~~~  237 (315)
                      +++++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++ .++..+..|. .|.+++|+|+|.  +.++.|+.
T Consensus       235 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             CCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence            9999999999999999999999999999999999999999999998 8888887776 699999999994  34456899


Q ss_pred             EEecCC
Q psy9936         238 VEFLKP  243 (315)
Q Consensus       238 i~~~~~  243 (315)
                      |++|+.
T Consensus       314 i~vwd~  319 (321)
T 3ow8_A          314 IHIYDC  319 (321)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-42  Score=300.52  Aligned_cols=262  Identities=15%  Similarity=0.194  Sum_probs=227.1

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      .+.. .+.|++++|+|++++|++|+.||+|+|||+.+++....+. |...|.+++|+|++++|++++ |+.+++|++...
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~  140 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ  140 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence            4555 7899999999999999999999999999999999888877 888999999999999999887 899999998431


Q ss_pred             E--------E-EEeecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEe-----ccCCCCeEEEEEcC-CCCE
Q psy9936          83 E--------L-HCLKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDF-----SAKKGKLSVMTQNP-YNAC  146 (315)
Q Consensus        83 ~--------~-~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~p-~~~~  146 (315)
                      .        . ....|...+.++.|+|+ +..|++++.|++|++||+.+++.+..+     .+|...|.+++|+| ++++
T Consensus       141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred             ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence            1        1 12346678999999997 457999999999999999999988777     57888999999987 8899


Q ss_pred             EEEEcCCCeEEEEcCC-CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC--------
Q psy9936         147 ICLGHRNGTVTMWSPT-VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT--------  217 (315)
Q Consensus       147 l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------  217 (315)
                      |++|+.|+.|++||++ ..+.+..+.+|...|++++|+|+|.+|++|+.|++|++||++++ .++..+..+.        
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~  299 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELP  299 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSC
T ss_pred             EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccC
Confidence            9999999999999998 45788889999999999999999999999999999999999998 7777665432        


Q ss_pred             CceeEEEccCCeEEE--EcCCEEEecCC--------------------CceeecccccccccCCcchhhhhhh
Q psy9936         218 PINNLAFSQRGLLAT--SRGNIVEFLKP--------------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       218 ~v~~~~~s~~g~~~~--~~~~~i~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      .+++++|+|+|.+++  +.|+.|++|+.                    .+++|+|++.++++|+.++.++.+.
T Consensus       300 ~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             SCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            378999999996443  35899999974                    5789999999999999999887764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=293.04  Aligned_cols=258  Identities=11%  Similarity=0.144  Sum_probs=213.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC------------ceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR------------KTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIY   77 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~   77 (315)
                      +..|.+++|+|||++|++++ |+++++||...            +.....+.+...|.+++|+|++.+++++.||.|++|
T Consensus        30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lW  108 (344)
T 4gqb_B           30 ERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELW  108 (344)
T ss_dssp             CSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred             cCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEE
Confidence            45689999999999999877 66777776321            112333446678999999999887777779999999


Q ss_pred             eCCC-CEEEE-----eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEE
Q psy9936          78 DNQG-IELHC-----LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLG  150 (315)
Q Consensus        78 ~~~~-~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~  150 (315)
                      |+.. +.+..     ..|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++. +|+++
T Consensus       109 d~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~  188 (344)
T 4gqb_B          109 ELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSC  188 (344)
T ss_dssp             EECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             eccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeee
Confidence            9853 32221     24678999999999999999999999999999999999999999999999999999985 78999


Q ss_pred             cCCCeEEEEcCCCCcceeEee--cccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEcc
Q psy9936         151 HRNGTVTMWSPTVQKPLASLL--CHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQ  226 (315)
Q Consensus       151 ~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~  226 (315)
                      +.|++|++||+++++++..+.  .|...+.+++|+|+ +++|++|+.|+.|++||++++ +++..+..|. .|++++|+|
T Consensus       189 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp  267 (344)
T 4gqb_B          189 SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSP  267 (344)
T ss_dssp             ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECS
T ss_pred             ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEcc
Confidence            999999999999999888774  45567999999995 678999999999999999998 8999998876 699999999


Q ss_pred             CC-eEE--EEcCCEEEecCC---------------Cceeecccccc-cccCCcchhhhhhhh
Q psy9936         227 RG-LLA--TSRGNIVEFLKP---------------PEINFEPRRKA-NKAGGSVQRAKVKKI  269 (315)
Q Consensus       227 ~g-~~~--~~~~~~i~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~  269 (315)
                      +| .++  ++.|++|++|+.               .+++|+|++.. +++++.|+.++.+..
T Consensus       268 ~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          268 HSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             SSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence            98 333  456999999987               67899999875 668888988877654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-42  Score=291.29  Aligned_cols=266  Identities=15%  Similarity=0.195  Sum_probs=220.0

Q ss_pred             EEeeC-CC-cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE--Ee--cCCCceeEEEEeecCcEEEEEe-CCeEEEE
Q psy9936           5 FDLDL-QF-GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC--EM--NVMEEVYDIKWLHLETMFAVAQ-KDWVYIY   77 (315)
Q Consensus         5 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~   77 (315)
                      ..+.. .. .|.+++|+|+|++||+|+.|+.|+|||+.++....  .+  .|...|.+++|+|++++|++++ |+.+++|
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw   88 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW   88 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence            34444 34 89999999999999999999999999998876432  22  3888999999999999999887 8999999


Q ss_pred             eCCCCE---EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC---eEEEEeccCCCCeEEEEEcCCCCEEEEE
Q psy9936          78 DNQGIE---LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG---KIVSDFSAKKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        78 ~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~  150 (315)
                      +.....   +..+ .|...|.+++|+|++++|++++.|++|++||+.++   ..+..+..|...|.+++|+|++++|+++
T Consensus        89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  168 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA  168 (345)
T ss_dssp             EECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE
T ss_pred             EccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE
Confidence            986543   2333 46689999999999999999999999999999876   3456778899999999999999999999


Q ss_pred             cCCCeEEEEcCCCCc--ceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC--------------CeeEec
Q psy9936         151 HRNGTVTMWSPTVQK--PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG--------------PLNTFR  214 (315)
Q Consensus       151 ~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~  214 (315)
                      +.|+.|++||+++++  +...+.+|...|++++|+|+|++|++++.|++|++||......              ++..+.
T Consensus       169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T 3fm0_A          169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS  248 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred             eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence            999999999998774  4567889999999999999999999999999999999754311              122233


Q ss_pred             c-CC-CceeEEEccCCe--EEEEcCCEEEecCC-------------------------Cceeecccc-cccccCCcchhh
Q psy9936         215 T-RT-PINNLAFSQRGL--LATSRGNIVEFLKP-------------------------PEINFEPRR-KANKAGGSVQRA  264 (315)
Q Consensus       215 ~-~~-~v~~~~~s~~g~--~~~~~~~~i~~~~~-------------------------~~~~~~~~~-~~~~~~~~~~~~  264 (315)
                      . |. .|.+++|+|++.  +.++.|+.|++|+.                         .+++|+|++ .++++++.|+.+
T Consensus       249 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v  328 (345)
T 3fm0_A          249 GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV  328 (345)
T ss_dssp             SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence            2 33 699999999984  45567999998842                         468899998 489999999988


Q ss_pred             hhhhhh
Q psy9936         265 KVKKIV  270 (315)
Q Consensus       265 ~~~~~~  270 (315)
                      +.++..
T Consensus       329 ~~W~~~  334 (345)
T 3fm0_A          329 AFWKYQ  334 (345)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            887654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-40  Score=290.25  Aligned_cols=237  Identities=15%  Similarity=0.227  Sum_probs=214.8

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-C
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-G   81 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~   81 (315)
                      .+.. ...|.+++|+|++++|++|+.|++|++||+.+++.+..+. |...|.+++|+|++.+|++++ |+.|++||+. +
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~  224 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG  224 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            3455 6789999999999999999999999999999999888877 888999999999999888876 8999999994 5


Q ss_pred             CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCC-----------------
Q psy9936          82 IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPY-----------------  143 (315)
Q Consensus        82 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~-----------------  143 (315)
                      ..+..+. |...|.++.|+|++.+|++++.|+.|++||+.+++....+..|...|.+++|+|+                 
T Consensus       225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  304 (410)
T 1vyh_C          225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS  304 (410)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred             cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccccc
Confidence            5555554 5688999999999999999999999999999999999999999999999999996                 


Q ss_pred             ---CCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-Cc
Q psy9936         144 ---NACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PI  219 (315)
Q Consensus       144 ---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v  219 (315)
                         |.+|++|+.|+.|++||+++++++..+.+|...|++++|+|+|++|++|+.|+.|++||+.++ +++..+..|. .|
T Consensus       305 ~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v  383 (410)
T 1vyh_C          305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFV  383 (410)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcE
Confidence               678999999999999999999999999999999999999999999999999999999999998 8888888876 69


Q ss_pred             eeEEEccCCe--EEEEcCCEEEecCC
Q psy9936         220 NNLAFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       220 ~~~~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                      ++++|+|++.  +.++.|++|++|+.
T Consensus       384 ~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          384 TSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            9999999994  44556999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3e-40  Score=281.48  Aligned_cols=263  Identities=15%  Similarity=0.181  Sum_probs=219.8

Q ss_pred             EEEeeC-CCcEEEEEE-----cC-CCCEEEEEcCCCeEEEEEccCc-------eEEEEec-CCCceeEEEEeecCcEEEE
Q psy9936           4 QFDLDL-QFGIYRMNY-----TK-NGRHLLLGGKRGHVAAFDWVRK-------TLACEMN-VMEEVYDIKWLHLETMFAV   68 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~-----s~-~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~~   68 (315)
                      ...+.. ...|++++|     ++ ++++|++|+.|++|++||+.+.       .....+. |...|.+++|+|++.++++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            344566 789999999     77 9999999999999999998643       3445555 8899999999999999988


Q ss_pred             Ee-CCeEEEEeCC-CCEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec---cCCCCeEEEEEcC
Q psy9936          69 AQ-KDWVYIYDNQ-GIELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS---AKKGKLSVMTQNP  142 (315)
Q Consensus        69 ~~-~~~i~i~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~p  142 (315)
                      ++ |+.|++||+. +..+..+ .|...|.+++|+|++.+|++++.|+.|++||+... ......   .|...+.+++|+|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECC
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecc
Confidence            87 8999999995 4555554 46689999999999999999999999999999843 333333   6888999999999


Q ss_pred             CC----------CEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         143 YN----------ACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       143 ~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                      ++          .+|++++.|+.|++||. ..+....+.+|...|.+++|+|+|++|++|+.|+.|++||+.....+...
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~  251 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE  251 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee
Confidence            87          78999999999999994 45667788899999999999999999999999999999999554256666


Q ss_pred             eccCCCceeEEEccCCeE-EEEcCCEEEecCC-----------------------------CceeecccccccccCCcch
Q psy9936         213 FRTRTPINNLAFSQRGLL-ATSRGNIVEFLKP-----------------------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       213 ~~~~~~v~~~~~s~~g~~-~~~~~~~i~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      +.....|.+++|+|++.+ +++.|+.+++|+.                             .+++|+|+++++++|+.++
T Consensus       252 ~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg  331 (343)
T 2xzm_R          252 FDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG  331 (343)
T ss_dssp             EECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred             ecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence            655667999999999964 4556888998864                             2478999999999999998


Q ss_pred             hhhhhh
Q psy9936         263 RAKVKK  268 (315)
Q Consensus       263 ~~~~~~  268 (315)
                      .++.+.
T Consensus       332 ~v~~w~  337 (343)
T 2xzm_R          332 VIRTFS  337 (343)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            776654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.8e-40  Score=274.51  Aligned_cols=263  Identities=18%  Similarity=0.246  Sum_probs=224.9

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      .+.+.. ..+|.+++|+|++++|++++.||.|++|++.+++....+. |...|.+++|+|++++|++++ |+.|++||+.
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            345555 7899999999999999999999999999999998888777 888999999999999998886 8999999995


Q ss_pred             -CCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          81 -GIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        81 -~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                       +..+..+. |...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...+.+++|+|++++|++++.|+.|++
T Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  175 (312)
T 4ery_A           96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  175 (312)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence             44555554 5688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCcceeEee-cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC---ceeEEEc-cCCeEEE-
Q psy9936         159 WSPTVQKPLASLL-CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP---INNLAFS-QRGLLAT-  232 (315)
Q Consensus       159 ~d~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s-~~g~~~~-  232 (315)
                      ||+++++.+..+. .+..++..++|+|++++|++++.|+.|++||++++ +++..+..|..   .....++ +++.+++ 
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  254 (312)
T 4ery_A          176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVS  254 (312)
T ss_dssp             EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred             EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence            9999998877764 45678999999999999999999999999999998 88888876652   2333444 4564433 


Q ss_pred             -EcCCEEEecCC----------------CceeecccccccccCC--cchhhhhh
Q psy9936         233 -SRGNIVEFLKP----------------PEINFEPRRKANKAGG--SVQRAKVK  267 (315)
Q Consensus       233 -~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~~  267 (315)
                       +.|+.|++|+.                ..++|+|++..+++++  .++.++.+
T Consensus       255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence             45899999987                5688999999998876  45555544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-40  Score=281.97  Aligned_cols=231  Identities=15%  Similarity=0.161  Sum_probs=194.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-----cCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-----NVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-I   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~   82 (315)
                      +.+|.+++|+|++ .|++++.||.|+|||+.+++....+     .|...|++++|+|++++|++++ |+.|++||+.. .
T Consensus        82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            5689999999985 7889999999999999988654322     3889999999999999999887 89999999954 4


Q ss_pred             EEEEee-cCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEcCCCeEE
Q psy9936          83 ELHCLK-VLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPY-NACICLGHRNGTVT  157 (315)
Q Consensus        83 ~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~-~~~l~~~~~d~~i~  157 (315)
                      .+..+. |...|.+++|+|++. +|++++.|++|++||+++++....+.  .+...+.+++|+|+ +++|++|+.|+.|+
T Consensus       161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            444544 668999999999974 78999999999999999998887764  35567899999995 56889999999999


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCC-CEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-EE--E
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTG-TYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-LA--T  232 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~--~  232 (315)
                      +||+++++++..+.+|...|++++|+|++ ++|++|+.|++|+|||+.++ +++ .+..|. .|++++|+|++. ++  +
T Consensus       241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~~~-~~~~H~~~V~~v~~sp~~~~llas~  318 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-ELF-RSQAHRDFVRDATWSPLNHSLLTTV  318 (344)
T ss_dssp             EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-EEE-EECCCSSCEEEEEECSSSTTEEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-cEE-EEcCCCCCEEEEEEeCCCCeEEEEE
Confidence            99999999999999999999999999998 58999999999999999987 554 455565 699999999983 44  3


Q ss_pred             EcCCEEEecCC
Q psy9936         233 SRGNIVEFLKP  243 (315)
Q Consensus       233 ~~~~~i~~~~~  243 (315)
                      +.|++|++|+.
T Consensus       319 s~D~~v~~w~v  329 (344)
T 4gqb_B          319 GWDHQVVHHVV  329 (344)
T ss_dssp             ETTSCEEEEEC
T ss_pred             cCCCeEEEEEC
Confidence            46999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-40  Score=278.41  Aligned_cols=264  Identities=15%  Similarity=0.208  Sum_probs=212.3

Q ss_pred             cEEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc--eEEEEe--c-CCCceeEEEEeecCcEEEEEe-CCeEE
Q psy9936           3 KQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK--TLACEM--N-VMEEVYDIKWLHLETMFAVAQ-KDWVY   75 (315)
Q Consensus         3 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~-~~~i~   75 (315)
                      .+..+.. ..+|.+++|+|+  +|++++.|+.|++|++.++  .....+  . |...|.+++|+|++.+|++++ |+.|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            3455666 789999999997  9999999999999999875  444444  3 788999999999999999887 89999


Q ss_pred             EEeCCC--------CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC----CeEEEEeccCCCCeEEEEEcC
Q psy9936          76 IYDNQG--------IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI----GKIVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        76 i~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~p  142 (315)
                      +|++..        ..+..+ .|...|.+++|+|++++|++++.|++|++||+..    .+.+..+.+|...|.+++|+|
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence            999842        122333 4668999999999999999999999999999943    256777889999999999999


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCC--cceeEeecccccEEEEEECCC--CCEEEEeeCCCcEEEEEccCCC-------CCee
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQ--KPLASLLCHKAGIQSVAVNHT--GTYMATSAGDSQLRIWDVRNLE-------GPLN  211 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~sp~--g~~l~~~~~d~~i~iwd~~~~~-------~~~~  211 (315)
                      ++.+|++++.|++|++||.+++  +++..+.+|...|.+++|+|+  +.+|++|+.|++|++||+....       .+..
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~  243 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA  243 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence            9999999999999999998766  678888999999999999999  7799999999999999997641       1222


Q ss_pred             Eecc-CC-CceeEEEccCCeE-EEEcCCEEEecCC--------------------Cceeecc--cccccccCCcchhhhh
Q psy9936         212 TFRT-RT-PINNLAFSQRGLL-ATSRGNIVEFLKP--------------------PEINFEP--RRKANKAGGSVQRAKV  266 (315)
Q Consensus       212 ~~~~-~~-~v~~~~~s~~g~~-~~~~~~~i~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~  266 (315)
                      .+.. |. .|.+++|++++.+ .++.|+.|++|+.                    ..++|+|  ++.++++++.++.++.
T Consensus       244 ~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~  323 (330)
T 2hes_X          244 ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF  323 (330)
T ss_dssp             ECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred             ecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence            3332 43 6999999988854 4556999998853                    3467888  6889999999988776


Q ss_pred             hh
Q psy9936         267 KK  268 (315)
Q Consensus       267 ~~  268 (315)
                      +.
T Consensus       324 W~  325 (330)
T 2hes_X          324 WS  325 (330)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-39  Score=278.42  Aligned_cols=270  Identities=16%  Similarity=0.228  Sum_probs=235.5

Q ss_pred             cEEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC
Q psy9936           3 KQFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus         3 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~   79 (315)
                      +.+.+.. ...|++++|+|++++|++++.||.|++||+.+++....+. |...|.+++|+|++++|++++ |+.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            4556777 8899999999999999999999999999999999988887 889999999999999988876 899999999


Q ss_pred             C-CCEEEEeecCCceEEEEEcCCCceEEEEcCC-----CeEEEEEccCCe-----------EEEEeccCCC--CeEEEEE
Q psy9936          80 Q-GIELHCLKVLNKVTRMEFLPYHFLLATASEE-----GYLSWLDTSIGK-----------IVSDFSAKKG--KLSVMTQ  140 (315)
Q Consensus        80 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~-----------~~~~~~~~~~--~v~~~~~  140 (315)
                      . +..+..+.+...+.+++|+|++.++++++.+     +.|.+||+..+.           ....+..|..  .+.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            4 5666667788999999999999999999998     999999997653           3344455655  8999999


Q ss_pred             cCCCCEEEEEcCCCeEEEEcCCC-CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc
Q psy9936         141 NPYNACICLGHRNGTVTMWSPTV-QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI  219 (315)
Q Consensus       141 ~p~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  219 (315)
                      +|++++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++.+|++++.|+.|++||++++ .++..+....++
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~  262 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-QVLKKYETDCPL  262 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSCE
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-ceeeeecCCCCc
Confidence            99999999999999999999998 7888888899999999999999999999999999999999998 888888877789


Q ss_pred             eeEEEccCCeEE--EEcCC--------------EEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         220 NNLAFSQRGLLA--TSRGN--------------IVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       220 ~~~~~s~~g~~~--~~~~~--------------~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      ..++|+|++.++  ++.++              .+++|+.                .+++|+|+++++++++.++.++.+
T Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence            999999999543  33455              6777765                568999999999999999988877


Q ss_pred             hhhHHH
Q psy9936         268 KIVRET  273 (315)
Q Consensus       268 ~~~~~~  273 (315)
                      ......
T Consensus       343 ~~~~~~  348 (369)
T 3zwl_B          343 HFEKSY  348 (369)
T ss_dssp             EECHHH
T ss_pred             ECcccc
Confidence            655443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-39  Score=274.08  Aligned_cols=237  Identities=12%  Similarity=0.224  Sum_probs=206.3

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce----EEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEe
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT----LACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYD   78 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~   78 (315)
                      ..+.. ...|.+++|+|++++|++++.|+.|++|++.++.    ....+. |...|.++.|++++.+++++.|+.|++||
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd  170 (340)
T 1got_B           91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD  170 (340)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEE
Confidence            34455 6789999999999999999999999999997653    344444 88899999999999877777799999999


Q ss_pred             CCC-CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          79 NQG-IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        79 ~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      +.. ..+..+. |...|.+++|+|++.++++++.|+.|++||++++..+..+.+|...|.+++|+|++++|++|+.|+.|
T Consensus       171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v  250 (340)
T 1got_B          171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC  250 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence            954 4444443 66899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCcceeEeec--ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EE
Q psy9936         157 TMWSPTVQKPLASLLC--HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LA  231 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~  231 (315)
                      ++||+++++.+..+..  +...|++++|+|+|++|++|+.|+.|++||+.++ ..+..+..|. +|.+++|+|+|.  +.
T Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s  329 (340)
T 1got_B          251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence            9999999887776652  3357999999999999999999999999999998 8888888876 699999999995  34


Q ss_pred             EEcCCEEEecC
Q psy9936         232 TSRGNIVEFLK  242 (315)
Q Consensus       232 ~~~~~~i~~~~  242 (315)
                      ++.|++|++|+
T Consensus       330 ~s~D~~i~iWd  340 (340)
T 1got_B          330 GSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEC
T ss_pred             EcCCccEEecC
Confidence            45699999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.1e-39  Score=272.72  Aligned_cols=263  Identities=14%  Similarity=0.130  Sum_probs=227.0

Q ss_pred             EeeC-CCcEEEEEEcCC-CCEEEEEcCCCeEEEEEccCce-----EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEE
Q psy9936           6 DLDL-QFGIYRMNYTKN-GRHLLLGGKRGHVAAFDWVRKT-----LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYI   76 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i   76 (315)
                      .|++ .+.|++++|+|+ +++|++|+.||+|+|||+.+.+     +...+. |...|.+++|+|++++|++++ |+.|++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            4556 789999999997 6899999999999999987543     344555 889999999999999999887 899999


Q ss_pred             EeCCCCEEEE--eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEE-EEeccCCCCeEEEEEcCCC--CEEEEEc
Q psy9936          77 YDNQGIELHC--LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV-SDFSAKKGKLSVMTQNPYN--ACICLGH  151 (315)
Q Consensus        77 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~p~~--~~l~~~~  151 (315)
                      |+........  ..+...+..+.+++++.+|++++.|+.+++||+...... .....|...+..++|++++  .++++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            9996554433  234477889999999999999999999999999766443 3456788999999999875  4788999


Q ss_pred             CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe-E
Q psy9936         152 RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL-L  230 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~  230 (315)
                      .|+.|++||+++++.+..+.+|..+|++++|+|++++|++|+.|+.|++||+++. .++..+..+..+..++|+|++. +
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~  271 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLDGGDIINALCFSPNRYWL  271 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECSSCEEEEEECSSSSEE
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeecCCceEEeeecCCCCcee
Confidence            9999999999999999999999999999999999999999999999999999998 8888888888999999999996 4


Q ss_pred             EEEcCCEEEecCC-------------------------CceeecccccccccCCcchhhhhhhh
Q psy9936         231 ATSRGNIVEFLKP-------------------------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       231 ~~~~~~~i~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                      +++.|+.|++|+.                         ++++|+|+++++++|+.++.++.+..
T Consensus       272 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            5567999998865                         46889999999999999998877653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.7e-39  Score=290.73  Aligned_cols=254  Identities=17%  Similarity=0.297  Sum_probs=226.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEee
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~   88 (315)
                      ...|.+++|+|++++|++++.|+.|++||..+........|...+.+++|+|++++|+++. ++.|++|+.++..+..+.
T Consensus       303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~  382 (577)
T 2ymu_A          303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  382 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec
Confidence            6789999999999999999999999999987766555455888999999999999999887 789999999887776655


Q ss_pred             -cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce
Q psy9936          89 -VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus        89 -~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~  167 (315)
                       |...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||. +++.+
T Consensus       383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~  460 (577)
T 2ymu_A          383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLL  460 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEE
Confidence             5688999999999999999999999999995 57888889999999999999999999999999999999996 46778


Q ss_pred             eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEE--EEcCCEEEecCC-
Q psy9936         168 ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLA--TSRGNIVEFLKP-  243 (315)
Q Consensus       168 ~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~--~~~~~~i~~~~~-  243 (315)
                      ..+.+|...|++++|+|++++|++++.|+.|++||. ++ +++..+..|. +|++++|+|+|.++  ++.|+.|++|+. 
T Consensus       461 ~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            889999999999999999999999999999999996 44 7888888876 69999999999533  456899999986 


Q ss_pred             --------------CceeecccccccccCCcchhhhhh
Q psy9936         244 --------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       244 --------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                                    ++++|+||++++++++.|+.++.+
T Consensus       539 ~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence                          578999999999999988876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-39  Score=296.11  Aligned_cols=259  Identities=12%  Similarity=0.192  Sum_probs=216.1

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC-CCCEEE
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN-QGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~-~~~~~~   85 (315)
                      ...|.+++|+|++. .|++++.|++|++||..+++....+. |...|.+++|+|++++|++++ |+.|++||+ ++..+.
T Consensus       147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~  226 (611)
T 1nr0_A          147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG  226 (611)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence            67899999999987 59999999999999999998888887 889999999999999999887 899999998 455555


Q ss_pred             Ee--------ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE------------------------------
Q psy9936          86 CL--------KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD------------------------------  127 (315)
Q Consensus        86 ~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~------------------------------  127 (315)
                      .+        .|...|.+++|+|++.+|++++.|++|++||+.+++.+..                              
T Consensus       227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence            55        4678999999999999999999999999999988765433                              


Q ss_pred             -------------eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEe-e----------------------
Q psy9936         128 -------------FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASL-L----------------------  171 (315)
Q Consensus       128 -------------~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~----------------------  171 (315)
                                   +.+|...|.+++|+|+|++|++++.|+.|++||+.+++....+ .                      
T Consensus       307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~  386 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW  386 (611)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred             EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEc
Confidence                         3468889999999999999999999999999998865432211 0                      


Q ss_pred             -----------------------------------------------------------cccccEEEEEECCCCCEEEEe
Q psy9936         172 -----------------------------------------------------------CHKAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       172 -----------------------------------------------------------~~~~~i~~~~~sp~g~~l~~~  192 (315)
                                                                                 .|...+.+++|+|+|++||+|
T Consensus       387 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasg  466 (611)
T 1nr0_A          387 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG  466 (611)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEe
Confidence                                                                       123457789999999999999


Q ss_pred             eCCCcEEEEEccCCCCC--eeEeccCCCceeEEEccCCeEEE--EcCCEEEecCC-------------------Cceeec
Q psy9936         193 AGDSQLRIWDVRNLEGP--LNTFRTRTPINNLAFSQRGLLAT--SRGNIVEFLKP-------------------PEINFE  249 (315)
Q Consensus       193 ~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~~~--~~~~~i~~~~~-------------------~~~~~~  249 (315)
                      +.|++|++||+.+. ..  +........|++++|+|||.+++  +.|++|++|+.                   .+++|+
T Consensus       467 s~D~~v~lwd~~~~-~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs  545 (611)
T 1nr0_A          467 GQDSKVHVYKLSGA-SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  545 (611)
T ss_dssp             ETTSEEEEEEEETT-EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             CCCCeEEEEEccCC-ceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence            99999999999875 32  23322334799999999996544  45889998854                   358899


Q ss_pred             ccccccccCCcchhhhhhhh
Q psy9936         250 PRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~  269 (315)
                      |+++++++++.++.++.+..
T Consensus       546 pdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          546 PDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEECCCcEEEEEC
Confidence            99999999999998888764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-39  Score=297.25  Aligned_cols=264  Identities=16%  Similarity=0.230  Sum_probs=224.6

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--EEEEec-CCCceeEEEEeecCcEEEEEeC-----CeEEE
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--LACEMN-VMEEVYDIKWLHLETMFAVAQK-----DWVYI   76 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-----~~i~i   76 (315)
                      .+.. ...|++++|+|+|++||+|+.||+|+|||+.+++  ....+. |.++|.+++|+|+++.|+++++     +.|++
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            3445 6789999999999999999999999999987543  334444 8889999999999999988763     37899


Q ss_pred             EeCCCCEEEEeecCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936          77 YDNQGIELHCLKVLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                      ||..........|...|.+++|+|++. .|++++.|++|++||..+++....+.+|...|.+++|+|+|++|++++.|++
T Consensus       134 wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~  213 (611)
T 1nr0_A          134 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT  213 (611)
T ss_dssp             TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc
Confidence            986332222235668999999999986 5999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCcceeEee-------cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC----CceeEEE
Q psy9936         156 VTMWSPTVQKPLASLL-------CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT----PINNLAF  224 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~v~~~~~  224 (315)
                      |++||+.+++.+..+.       +|.+.|.+++|+|+|++|++++.|++|++||+.++ +++..+..+.    .+..+.|
T Consensus       214 i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~  292 (611)
T 1nr0_A          214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIW  292 (611)
T ss_dssp             EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGGCEEEEEE
T ss_pred             EEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCccceeEEEEE
Confidence            9999999998888774       79999999999999999999999999999999988 7777776543    3566777


Q ss_pred             ccCCeEEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhh
Q psy9936         225 SQRGLLATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       225 s~~g~~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (315)
                      .....+.++.++.++.|++                .+++|+|+++++++++.++.++.+...
T Consensus       293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence            5555677788999999975                468899999999999999988776543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.4e-39  Score=298.63  Aligned_cols=262  Identities=13%  Similarity=0.141  Sum_probs=225.4

Q ss_pred             EeeC-CCcEEEEEEcCCC-CEEEEEcCCCeEEEEEccCc-----eEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEE
Q psy9936           6 DLDL-QFGIYRMNYTKNG-RHLLLGGKRGHVAAFDWVRK-----TLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYI   76 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i   76 (315)
                      .+.. .+.|++++|+|++ ++|++|+.|++|++|++.+.     .....+. |...|.+++|+|++++|++++ |+.|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            4556 7899999999875 69999999999999998753     3344444 889999999999999999887 899999


Q ss_pred             EeCCC-CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe---ccCCCCeEEEEEcCCC--CEEEE
Q psy9936          77 YDNQG-IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF---SAKKGKLSVMTQNPYN--ACICL  149 (315)
Q Consensus        77 ~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~p~~--~~l~~  149 (315)
                      ||+.. .....+ .|...|.+++|+|++.+|++++.|++|++||+.........   .+|...|.+++|+|++  ..|++
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  536 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS  536 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence            99954 444444 46789999999999999999999999999998755433332   4688889999999987  58999


Q ss_pred             EcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      ++.|+.|++||+++++....+.+|.+.|++++|+|+|++|++|+.|+.|++||++++ +++..+..+..+.+++|+|++.
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~  615 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEANSVIHALCFSPNRY  615 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCSSCEEEEEECSSSS
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCCcEEEEEEcCCCc
Confidence            999999999999999999999999999999999999999999999999999999998 8888887777899999999996


Q ss_pred             -EEEEcCCEEEecCC-----------------------------------CceeecccccccccCCcchhhhhhh
Q psy9936         230 -LATSRGNIVEFLKP-----------------------------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       230 -~~~~~~~~i~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                       ++++.++.|++|+.                                   ++++|+|+++++++|+.++.++.+.
T Consensus       616 ~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          616 WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG  690 (694)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence             45566888999876                                   2468999999999999999887764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-38  Score=266.07  Aligned_cols=237  Identities=11%  Similarity=0.135  Sum_probs=206.0

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      ..+.. ..+|.+++|+|++++|++|+.|+.|++||+.+++.+..+. |...|.+++|+|++.+|++++ |++|++||+..
T Consensus        49 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~  128 (304)
T 2ynn_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (304)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred             EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence            34555 6789999999999999999999999999999999888877 889999999999999998887 89999999854


Q ss_pred             C-EE-EEe-ecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEcCCC
Q psy9936          82 I-EL-HCL-KVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMTQNP--YNACICLGHRNG  154 (315)
Q Consensus        82 ~-~~-~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~p--~~~~l~~~~~d~  154 (315)
                      . .. ..+ .|...|.+++|+| ++..|++++.|++|++||+.++.....+. .|...+..+.|+|  ++.+|++|+.|+
T Consensus       129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~  208 (304)
T 2ynn_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (304)
T ss_dssp             TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred             CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence            3 33 333 4668899999999 57899999999999999998776655544 4667899999987  678999999999


Q ss_pred             eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC---eE
Q psy9936         155 TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG---LL  230 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g---~~  230 (315)
                      .|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.++ +++..+..+. .+.+++|+|++   .+
T Consensus       209 ~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (304)
T 2ynn_A          209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYI  287 (304)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCSSSSEEEEEECTTCGGGCE
T ss_pred             eEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeeccCCCccEEEEEECCCCCceEE
Confidence            9999999999999999999999999999999999999999999999999998 8888888765 68999999987   25


Q ss_pred             EEEcCCEEEecC
Q psy9936         231 ATSRGNIVEFLK  242 (315)
Q Consensus       231 ~~~~~~~i~~~~  242 (315)
                      +++.++.+.+|.
T Consensus       288 asg~~~g~~~~~  299 (304)
T 2ynn_A          288 ASGFDNGFTVLS  299 (304)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEecCCceEEEE
Confidence            556677766665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.2e-39  Score=277.24  Aligned_cols=258  Identities=15%  Similarity=0.215  Sum_probs=214.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCC-------------------CceeEEEEeecCcEEEEE
Q psy9936           9 LQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM-------------------EEVYDIKWLHLETMFAVA   69 (315)
Q Consensus         9 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~   69 (315)
                      ....|.+++|+|||++||+|+ ++.+++|++.+++.+..+...                   ..|.+++|+|++++|+++
T Consensus        63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            478899999999999999986 678999999999887766421                   138999999999999988


Q ss_pred             e-CCeEEEEeCCCCE-EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCC
Q psy9936          70 Q-KDWVYIYDNQGIE-LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNA  145 (315)
Q Consensus        70 ~-~~~i~i~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~  145 (315)
                      + |+.|++||+.... +..+ .|...|.+++|+|++.+|++++.|++|++||+++++....+. +...+.+++|+| +++
T Consensus       142 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCC
T ss_pred             cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCC
Confidence            7 8999999996544 3344 466889999999999999999999999999999998887776 556799999999 899


Q ss_pred             EEEEEcCCCeEEEEcCCCCcceeEe-------ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC-----------
Q psy9936         146 CICLGHRNGTVTMWSPTVQKPLASL-------LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE-----------  207 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~-----------  207 (315)
                      +|++|+.|+.|++||+++++.+..+       .+|...|.+++|+|+|++|++|+.|+.|++||+++..           
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~  300 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  300 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence            9999999999999999998877766       5789999999999999999999999999999997641           


Q ss_pred             CCeeEeccCC-CceeEEEccCCeEE--EEcCCEEEecCC----------------Cceeec------ccccccccCCcch
Q psy9936         208 GPLNTFRTRT-PINNLAFSQRGLLA--TSRGNIVEFLKP----------------PEINFE------PRRKANKAGGSVQ  262 (315)
Q Consensus       208 ~~~~~~~~~~-~v~~~~~s~~g~~~--~~~~~~i~~~~~----------------~~~~~~------~~~~~~~~~~~~~  262 (315)
                      .+...+..|. .|.+++|+|++.++  ++.|+.|++|++                .+++|+      |++..+++|+.++
T Consensus       301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence            2334455565 58999999999543  446899999987                345554      4788999999999


Q ss_pred             hhhhhh
Q psy9936         263 RAKVKK  268 (315)
Q Consensus       263 ~~~~~~  268 (315)
                      .++.+.
T Consensus       381 ~i~iW~  386 (393)
T 1erj_A          381 KARIWK  386 (393)
T ss_dssp             EEEEEE
T ss_pred             cEEECc
Confidence            887764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2e-38  Score=275.05  Aligned_cols=231  Identities=16%  Similarity=0.233  Sum_probs=203.4

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEEee
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHCLK   88 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~~~   88 (315)
                      .|.+++|+|+|++|++|+.|+.|++||+.+++....+. |...|.+++|+|++.+|++++ |+.|++||+.. .....+.
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            48999999999999999999999999999999888877 889999999999999888876 89999999954 4455567


Q ss_pred             cCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          89 VLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDF-------SAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        89 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      +...+.+++|+| ++.+|++++.|+.|++||+.++..+..+       .+|...|.+++|+|+|++|++|+.|+.|++||
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            778899999999 8999999999999999999998877766       57889999999999999999999999999999


Q ss_pred             CCCC------------cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEcc-
Q psy9936         161 PTVQ------------KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQ-  226 (315)
Q Consensus       161 ~~~~------------~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~-  226 (315)
                      +++.            .+...+.+|...|.+++|+|++.+|++|+.|+.|++||+.++ .++..+..|. .|.+++|+| 
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSS
T ss_pred             CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCC
Confidence            9753            345567789999999999999999999999999999999998 8888888876 699999986 


Q ss_pred             -----CCe--EEEEcCCEEEecCC
Q psy9936         227 -----RGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       227 -----~g~--~~~~~~~~i~~~~~  243 (315)
                           ++.  +.++.|++|++|+.
T Consensus       364 ~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          364 SSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             cCcCCCCCEEEEECCCCcEEECcc
Confidence                 454  34456999999984

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6e-39  Score=277.26  Aligned_cols=258  Identities=12%  Similarity=0.146  Sum_probs=215.6

Q ss_pred             EeeC-CCcEEEEEEcCCC-CEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEee-cCcEEEEEe-CCeEEEEe
Q psy9936           6 DLDL-QFGIYRMNYTKNG-RHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLH-LETMFAVAQ-KDWVYIYD   78 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~   78 (315)
                      .+.. ...|.+++|+|++ ++|++|+.||.|++||+.+++....+.   |...|.+++|+| ++.+|++++ |+.|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            3444 7899999999999 899999999999999999887776654   888999999999 678888776 89999999


Q ss_pred             CCCCEEEEeecC----CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEcCC
Q psy9936          79 NQGIELHCLKVL----NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGHRN  153 (315)
Q Consensus        79 ~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d  153 (315)
                      +.+..+..+...    ..|.+++|+|++.+|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ +|++++.|
T Consensus       148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence            987776665432    67999999999999999999999999999 5788888999999999999999999 99999999


Q ss_pred             CeEEEEcCCC----CcceeEeecccccEEEEEECC-CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-----------
Q psy9936         154 GTVTMWSPTV----QKPLASLLCHKAGIQSVAVNH-TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-----------  217 (315)
Q Consensus       154 ~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------  217 (315)
                      +.|++||+++    +..+..+ +|...|.+++|+| ++.+|++++.|+.|++||++++ .....+..+.           
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~  304 (383)
T 3ei3_B          227 ATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQFQHLTPIK  304 (383)
T ss_dssp             SEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCCCTTSCCCC
T ss_pred             CEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccccccccccceE
Confidence            9999999997    5555555 6999999999999 9999999999999999999988 6655554331           


Q ss_pred             -------CceeEEEccCCeEEEEcCCEEEecCC------------------CceeecccccccccCCcchhhhhh
Q psy9936         218 -------PINNLAFSQRGLLATSRGNIVEFLKP------------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       218 -------~v~~~~~s~~g~~~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                             .+..++|+|+|.+.++.|+.|++|+.                  ..++|+|++.++++++ ++.++.+
T Consensus       305 ~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          305 ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW  378 (383)
T ss_dssp             CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             EeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence                   22335555555443346899999986                  3458999999999996 6665554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-38  Score=264.82  Aligned_cols=238  Identities=18%  Similarity=0.206  Sum_probs=195.7

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC--ceEEEEec-CCCceeEEEEeec--CcEEEEEe-CCeEEEEe
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR--KTLACEMN-VMEEVYDIKWLHL--ETMFAVAQ-KDWVYIYD   78 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~--~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~-~~~i~i~~   78 (315)
                      .+.. ...|++++|+|+|++||+|+.|++|+||++.+  .+.+..+. |.++|.+++|+|+  +.+|++++ |++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            3444 78999999999999999999999999999874  35566666 8999999999864  78888876 89999999


Q ss_pred             CCCC---EEEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCe--EEEEeccCCCCeEEEEEcCC-------
Q psy9936          79 NQGI---ELHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGK--IVSDFSAKKGKLSVMTQNPY-------  143 (315)
Q Consensus        79 ~~~~---~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~p~-------  143 (315)
                      +...   .+..+ .|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+.+|...|.+++|+|+       
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence            9643   22333 46689999999998  8899999999999999998753  23567789999999999997       


Q ss_pred             ------CCEEEEEcCCCeEEEEcCCCCc----ceeEeecccccEEEEEECCCC---CEEEEeeCCCcEEEEEccCCCCC-
Q psy9936         144 ------NACICLGHRNGTVTMWSPTVQK----PLASLLCHKAGIQSVAVNHTG---TYMATSAGDSQLRIWDVRNLEGP-  209 (315)
Q Consensus       144 ------~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~sp~g---~~l~~~~~d~~i~iwd~~~~~~~-  209 (315)
                            +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|++|+|||+++.... 
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~  243 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW  243 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc
Confidence                  5799999999999999998765    556788999999999999995   89999999999999999875111 


Q ss_pred             e-eEe--ccC-CCceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         210 L-NTF--RTR-TPINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       210 ~-~~~--~~~-~~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                      . ..+  ..+ ..|.+++|+|+|.+  .++.|+.|++|++
T Consensus       244 ~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            1 222  222 36899999999953  3456899999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-37  Score=262.89  Aligned_cols=235  Identities=13%  Similarity=0.211  Sum_probs=205.0

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      .+.. ...|.+++|+|++++|++++.|++|++||+.+++....+. |...|.+++|+|++.+|++++ |+.|++||+.+.
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~  139 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ  139 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            3455 7889999999999999999999999999999999888877 889999999999999998887 899999999877


Q ss_pred             EEEEe-ecCCceEEEEEcCC------CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936          83 ELHCL-KVLNKVTRMEFLPY------HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus        83 ~~~~~-~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                      .+..+ .|...|.++.|+|.      +..+++++.|+.|++||+.+++....+.+|...|.+++|+|+|++|++|+.|+.
T Consensus       140 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~  219 (319)
T 3frx_A          140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE  219 (319)
T ss_dssp             EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE
T ss_pred             eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            76654 46688999999985      448999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc---------CCCceeEEEcc
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT---------RTPINNLAFSQ  226 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~s~  226 (315)
                      |++||+++++++..+.. ...|.+++|+|++.+|++++.+ .+++|++... ..+..+..         ...+.+++|+|
T Consensus       220 i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          220 IMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             EEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred             EEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccccccCcCcceeEEEECC
Confidence            99999999998888874 5789999999999999988765 4999999876 55554432         22478999999


Q ss_pred             CCeEE--EEcCCEEEecCC
Q psy9936         227 RGLLA--TSRGNIVEFLKP  243 (315)
Q Consensus       227 ~g~~~--~~~~~~i~~~~~  243 (315)
                      ||.++  ++.|+.|++|+.
T Consensus       297 dg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          297 DGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             TSSEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEeecCceEEEEEE
Confidence            99644  446999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.5e-38  Score=265.33  Aligned_cols=255  Identities=16%  Similarity=0.183  Sum_probs=218.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE---EEEe---cCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL---ACEM---NVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~---~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      ..+|.+++|+|++++|++++ ||.|++|++.++..   ...+   .|...+.+++|+|++++|++++ ++.|++||+...
T Consensus        51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  129 (337)
T 1gxr_A           51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred             CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            78899999999999999998 99999999987642   2222   4778999999999999888876 899999999654


Q ss_pred             E---EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          83 E---LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        83 ~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      .   ...+ .+...+.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++
T Consensus       130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  209 (337)
T 1gxr_A          130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS  209 (337)
T ss_dssp             --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence            3   2223 35578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeE--EEEcCC
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLL--ATSRGN  236 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~~  236 (315)
                      ||+++++.+..+. +...+.+++|+|++++|++++.++.|++||+.+. ..........++.+++|+|++.+  .++.++
T Consensus       210 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          210 WDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-CeEEEcCCccceeEEEECCCCCEEEEecCCC
Confidence            9999998887775 7889999999999999999999999999999987 54433333447999999999953  344589


Q ss_pred             EEEecCC---------------CceeecccccccccCCcchhhhhh
Q psy9936         237 IVEFLKP---------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       237 ~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      .|++|+.               ..+.|+|+++++++++.++.++.+
T Consensus       288 ~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          288 LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence            9999986               568899999999999888766544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-37  Score=264.53  Aligned_cols=236  Identities=13%  Similarity=0.182  Sum_probs=202.2

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc------eEEEEe-cCCCceeEEEEeecCcEEEEEe-CCeEEE
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK------TLACEM-NVMEEVYDIKWLHLETMFAVAQ-KDWVYI   76 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~i   76 (315)
                      .+.. ...|.+++|+|+|.+|++++.|+.+++|++...      .....+ .|...|.+++|+|++..|++++ |++|++
T Consensus       101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l  180 (354)
T 2pbi_B          101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL  180 (354)
T ss_dssp             EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence            3444 567899999999999999999999999998643      122333 3888999999999998877776 899999


Q ss_pred             EeCC-CCEEEEee-cCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC
Q psy9936          77 YDNQ-GIELHCLK-VLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        77 ~~~~-~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      ||+. +..+..+. |...|.+++|+|+  +++|++++.||.|++||+++++.+..+..|...|++++|+|++++|++|+.
T Consensus       181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence            9995 45555554 6688999999884  689999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCCcceeEeecc--cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe
Q psy9936         153 NGTVTMWSPTVQKPLASLLCH--KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL  229 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~  229 (315)
                      |++|++||+++++.+..+..+  ...+.+++|+|+|.+|++|+.|+.|++||+.++ .++..+..|. .|++++|+|+|.
T Consensus       261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILFGHENRVSTLRVSPDGT  339 (354)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEEECCCCcEEEEEECCCCC
Confidence            999999999988777666533  357899999999999999999999999999988 8888887776 699999999995


Q ss_pred             --EEEEcCCEEEecC
Q psy9936         230 --LATSRGNIVEFLK  242 (315)
Q Consensus       230 --~~~~~~~~i~~~~  242 (315)
                        +.++.|++|++|+
T Consensus       340 ~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          340 AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEecC
Confidence              3445699999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.2e-38  Score=270.33  Aligned_cols=233  Identities=12%  Similarity=0.120  Sum_probs=203.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~   85 (315)
                      ..+|++++|+|++++|++++.++.|++||+.+++  ....+. |...|.+++|+|++++|++++ |+.|++||+......
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   87 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   87 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence            6889999999999999999999999999999987  666665 889999999999999998876 899999999655422


Q ss_pred             -E---eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE----EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEE
Q psy9936          86 -C---LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI----VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVT  157 (315)
Q Consensus        86 -~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  157 (315)
                       .   ..+...|.+++|+|++++|++++.|+.|++||+..+..    ......|...|.+++|+|++++|++++.|+.|+
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  167 (372)
T 1k8k_C           88 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  167 (372)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence             2   34668899999999999999999999999999988752    233456889999999999999999999999999


Q ss_pred             EEcCC------------------CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-C
Q psy9936         158 MWSPT------------------VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-P  218 (315)
Q Consensus       158 i~d~~------------------~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~  218 (315)
                      +||++                  .++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++++ +++..+..+. +
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~  246 (372)
T 1k8k_C          168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLASETLP  246 (372)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCC
T ss_pred             EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEEccCCCC
Confidence            99954                  56788888889999999999999999999999999999999998 8888888776 7


Q ss_pred             ceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         219 INNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       219 v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      +.+++|+|++. ++++.|+.|++|+.
T Consensus       247 v~~~~~~~~~~~l~~~~d~~i~i~~~  272 (372)
T 1k8k_C          247 LLAVTFITESSLVAAGHDCFPVLFTY  272 (372)
T ss_dssp             EEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred             eEEEEEecCCCEEEEEeCCeEEEEEc
Confidence            99999999996 44556888877653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.8e-39  Score=282.16  Aligned_cols=257  Identities=13%  Similarity=0.166  Sum_probs=206.8

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEe---cCCCceeEEEEee-cCcEEEEEe-CCeEEEEeCCCCE
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEM---NVMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      +..|+|++|+| ++.+||+|+.||.|+|||+.+++....+   .|.+.|++++|+| ++.+|++++ |++|++||+++..
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~  198 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI  198 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence            67799999999 5679999999999999999877644333   3889999999998 678888776 8999999998776


Q ss_pred             EEEeecC----CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEEE
Q psy9936          84 LHCLKVL----NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVTM  158 (315)
Q Consensus        84 ~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i  158 (315)
                      ...+...    ..+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|++|+.|+.|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~i  277 (435)
T 4e54_B          199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI  277 (435)
T ss_dssp             EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCE
T ss_pred             eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeE
Confidence            6655432    457889999999999999999999999986 566777889999999999999886 7889999999999


Q ss_pred             EcCCCCcceeE---eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-------CceeEEEccCC
Q psy9936         159 WSPTVQKPLAS---LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-------PINNLAFSQRG  228 (315)
Q Consensus       159 ~d~~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~g  228 (315)
                      ||+++.+....   ..+|..+|++++|+|+|.+|++++.|+.|+|||+.++ .....+..|.       .+....|+|++
T Consensus       278 wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
T 4e54_B          278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRY  356 (435)
T ss_dssp             EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred             EecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCC
Confidence            99998765433   3579999999999999999999999999999999988 6665554432       23456777776


Q ss_pred             e-EEEE-------------cCCEEEecCC-----------------Cce-eecccccccccCCcchhhhhhhh
Q psy9936         229 L-LATS-------------RGNIVEFLKP-----------------PEI-NFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       229 ~-~~~~-------------~~~~i~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                      . ++++             .++.|++|+.                 .++ +|+|++.++++|+ ++.++.+..
T Consensus       357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred             CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence            3 2222             1246888865                 333 6999999999876 556666653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.1e-37  Score=279.36  Aligned_cols=258  Identities=16%  Similarity=0.279  Sum_probs=226.8

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      .+.. ...|.+++|+|+++.|++++.|+.|++|+.. ++....+. |...|.+++|+|++.+|++++ |+.|++||.++.
T Consensus       257 ~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~  335 (577)
T 2ymu_A          257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ  335 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            3444 7889999999999999999999999999965 45555555 889999999999999998876 899999999887


Q ss_pred             EEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          83 ELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        83 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .+..+. +...+.+++|+|++.+|++++.|+.|++||. +++.+..+..|...|.+++|+|+|++|++++.|+.|++||.
T Consensus       336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~  414 (577)
T 2ymu_A          336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  414 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            766654 5588999999999999999999999999995 57888889999999999999999999999999999999996


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEE--EcCCEE
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLAT--SRGNIV  238 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~--~~~~~i  238 (315)
                       +++.+..+.+|...|++++|+|++++|++++.|+.|++||...  +.+..+..|. +|++++|+|++.+++  +.|+.|
T Consensus       415 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i  491 (577)
T 2ymu_A          415 -NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  491 (577)
T ss_dssp             -TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             -CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence             4677888999999999999999999999999999999999754  6777777765 699999999996444  468999


Q ss_pred             EecCC---------------CceeecccccccccCCcchhhhhhh
Q psy9936         239 EFLKP---------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       239 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      ++|+.               ++++|+|+++++++++.++.++.+.
T Consensus       492 ~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          492 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             EEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            99976               6789999999999999999887764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-36  Score=259.15  Aligned_cols=233  Identities=14%  Similarity=0.173  Sum_probs=195.0

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      +.. ...|.+++|+|++.+|++++.|++|++||+.+++....+. |...|.+++|+|++++|++++ |+.|++||+.+..
T Consensus        72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~  151 (343)
T 2xzm_R           72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC  151 (343)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred             hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence            444 6789999999999999999999999999999999888876 889999999999999888876 8999999997655


Q ss_pred             EEEe----ecCCceEEEEEcCCC----------ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          84 LHCL----KVLNKVTRMEFLPYH----------FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        84 ~~~~----~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      ....    .|...|.+++|+|++          .+|++++.|+.|++||. .+.....+..|...|.+++|+|+|++|++
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence            4443    355789999999986          68999999999999994 56777788899999999999999999999


Q ss_pred             EcCCCeEEEEcCCC-CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee--Eec-----------c
Q psy9936         150 GHRNGTVTMWSPTV-QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN--TFR-----------T  215 (315)
Q Consensus       150 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~--~~~-----------~  215 (315)
                      |+.|+.|++||+++ ..+...+. +...|.+++|+|++.+++++ .|+.|++||+.+. ....  .+.           .
T Consensus       231 gs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          231 GGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ-SKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             EETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC-CSCSEEECCCCSGGGBTTBCC
T ss_pred             EcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC-CCCceEEeecCcchhhhhhcC
Confidence            99999999999954 44444443 56779999999999988755 5778999999876 4433  332           2


Q ss_pred             CC-CceeEEEccCCe--EEEEcCCEEEecCC
Q psy9936         216 RT-PINNLAFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       216 ~~-~v~~~~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                      |. .+.+++|+|+|.  +.++.|+.|++|+.
T Consensus       308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             SCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             CCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence            33 589999999994  34456999999974

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.4e-38  Score=275.14  Aligned_cols=231  Identities=13%  Similarity=0.237  Sum_probs=190.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-----------EEEEec-CC------------CceeEEEEeecC--
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-----------LACEMN-VM------------EEVYDIKWLHLE--   63 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----------~~~~~~-~~------------~~v~~~~~~~~~--   63 (315)
                      .+.|.+++|+|+|++||+|+.||.|+||++.+++           ....+. |.            ..|.+++|+|++  
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            5799999999999999999999999999998776           355555 76            789999999987  


Q ss_pred             cEEEEE-eCCeEEEEeCCCCEEE----------------------------------------E--eecCCceEEEEEcC
Q psy9936          64 TMFAVA-QKDWVYIYDNQGIELH----------------------------------------C--LKVLNKVTRMEFLP  100 (315)
Q Consensus        64 ~~l~~~-~~~~i~i~~~~~~~~~----------------------------------------~--~~~~~~v~~~~~~~  100 (315)
                      .+|+++ .|+.|++|++......                                        .  ..|...|.+++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            566655 4899999998542211                                        1  23668899999999


Q ss_pred             CCceEEEEcCCCeEEEEEccC-CeEEE-------EeccCCCCeEEEEEcCCC-CEEEEEcCCCeEEEEcCCCCcc----e
Q psy9936         101 YHFLLATASEEGYLSWLDTSI-GKIVS-------DFSAKKGKLSVMTQNPYN-ACICLGHRNGTVTMWSPTVQKP----L  167 (315)
Q Consensus       101 ~~~~l~~~~~d~~i~~~d~~~-~~~~~-------~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~i~d~~~~~~----~  167 (315)
                      ++.+|+++ .|+.|++||+.+ ++.+.       .+..|...|.+++|+|++ ++|++|+.|+.|++||+++++.    +
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            99999998 799999999984 34444       256799999999999998 8999999999999999999876    7


Q ss_pred             eEeecccc------------cEEEEEECCCCCEEEEeeCCCcEEEEEccC-CCCCeeEeccCCCce--------------
Q psy9936         168 ASLLCHKA------------GIQSVAVNHTGTYMATSAGDSQLRIWDVRN-LEGPLNTFRTRTPIN--------------  220 (315)
Q Consensus       168 ~~~~~~~~------------~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~--------------  220 (315)
                      ..+..|..            .|.+++|+|+|++|++++. +.|++||+++ + .++..+..|..+.              
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~i~~  344 (447)
T 3dw8_B          267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN-RPVETYQVHEYLRSKLCSLYENDCIFD  344 (447)
T ss_dssp             EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-SCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred             eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-cccceeecccccccccccccccccccc
Confidence            78887776            8999999999999999999 9999999997 5 8888888776433              


Q ss_pred             --eEEEccCCeEEE--EcCCEEEecCC
Q psy9936         221 --NLAFSQRGLLAT--SRGNIVEFLKP  243 (315)
Q Consensus       221 --~~~~s~~g~~~~--~~~~~i~~~~~  243 (315)
                        .++|+|+|.+++  +.|+.|++|+.
T Consensus       345 ~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          345 KFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             CCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             ceEEEECCCCCEEEEeccCCEEEEEEc
Confidence              399999995433  45899999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-38  Score=275.90  Aligned_cols=259  Identities=17%  Similarity=0.233  Sum_probs=224.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC----ceEEEEec-CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR----KTLACEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      ...|.+++|+|++++|++++.||.|++|++.+    .+....+. |...|.+++|+|+ +.+|++++ |+.|++||+...
T Consensus        67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            67899999999999999999999999999987    34566665 8899999999998 88888876 899999999543


Q ss_pred             E-------EEE----eecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccC------CCCeEEEEEcCCC
Q psy9936          83 E-------LHC----LKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAK------KGKLSVMTQNPYN  144 (315)
Q Consensus        83 ~-------~~~----~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~p~~  144 (315)
                      .       ...    ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+      ...+.+++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence            2       222    235688999999999 789999999999999999999998888776      7889999999997


Q ss_pred             -CEEEEEcCCC---eEEEEcCCCC-cceeEee-cccccEEEEEECC-CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         145 -ACICLGHRNG---TVTMWSPTVQ-KPLASLL-CHKAGIQSVAVNH-TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       145 -~~l~~~~~d~---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~sp-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                       .++++++.|+   .|++||++++ .++..+. +|...|.+++|+| ++.+|++++.|+.|++||++++ +++..+..|.
T Consensus       227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~  305 (416)
T 2pm9_A          227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARG  305 (416)
T ss_dssp             TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSS
T ss_pred             CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCC
Confidence             5899999998   9999999986 6777887 8999999999999 8999999999999999999998 8888888776


Q ss_pred             -CceeEEEccCC-eEEE--EcCCEEEecCC--------------------------------------------------
Q psy9936         218 -PINNLAFSQRG-LLAT--SRGNIVEFLKP--------------------------------------------------  243 (315)
Q Consensus       218 -~v~~~~~s~~g-~~~~--~~~~~i~~~~~--------------------------------------------------  243 (315)
                       .|.+++|+|++ .+++  +.|+.|++|+.                                                  
T Consensus       306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP  385 (416)
T ss_dssp             SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred             CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence             69999999998 4444  34899998864                                                  


Q ss_pred             -CceeecccccccccCCcchhhhhhhh
Q psy9936         244 -PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       244 -~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                       ..++|+|+|+++++++.++.++.+..
T Consensus       386 ~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          386 SPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             SCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             ccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence             25679999999999999888776654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.5e-38  Score=268.86  Aligned_cols=232  Identities=14%  Similarity=0.148  Sum_probs=190.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE-----EecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC-----EMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI-   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~-   82 (315)
                      ..+|.+++|+|++.++ +++.||+|+|||+.+++...     ...|...|.+++|+|++++|++++ |+.|++||+... 
T Consensus        94 ~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~  172 (357)
T 4g56_B           94 EAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA  172 (357)
T ss_dssp             SSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            6789999999998654 56789999999998876432     224788999999999999999886 899999999654 


Q ss_pred             EEEEee-cCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCC-CEEEEEcCCCeEE
Q psy9936          83 ELHCLK-VLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYN-ACICLGHRNGTVT  157 (315)
Q Consensus        83 ~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~-~~l~~~~~d~~i~  157 (315)
                      .+..+. |...|.+++|+|++. ++++++.|+.|++||+++++....+.  .+...+.+++|+|++ .+|++|+.|+.|+
T Consensus       173 ~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~  252 (357)
T 4g56_B          173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS  252 (357)
T ss_dssp             EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred             EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence            444443 568999999999874 78999999999999999887766543  466779999999975 5889999999999


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCC-CEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEcc-CCeE--EEE
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTG-TYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQ-RGLL--ATS  233 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~--~~~  233 (315)
                      +||+++++++..+.+|...|++++|+|++ ++||+|+.|++|+|||++++ +++..+.....|++++|+| ++.+  .++
T Consensus       253 ~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~~~~H~~~V~~vafsP~d~~~l~s~s  331 (357)
T 4g56_B          253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-EVFRDLSHRDFVTGVAWSPLDHSKFTTVG  331 (357)
T ss_dssp             EEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-EEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-cEeEECCCCCCEEEEEEeCCCCCEEEEEc
Confidence            99999999999999999999999999997 58999999999999999998 7776665445799999999 6743  345


Q ss_pred             cCCEEEecCC
Q psy9936         234 RGNIVEFLKP  243 (315)
Q Consensus       234 ~~~~i~~~~~  243 (315)
                      .|++|++|++
T Consensus       332 ~Dg~v~iW~~  341 (357)
T 4g56_B          332 WDHKVLHHHL  341 (357)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCeEEEEEC
Confidence            6999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.2e-38  Score=265.17  Aligned_cols=234  Identities=17%  Similarity=0.195  Sum_probs=192.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--EEEEec-CCCceeEEEEee--cCcEEEEEe-CCeEEEEeCCCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--LACEMN-VMEEVYDIKWLH--LETMFAVAQ-KDWVYIYDNQGI-   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~-~~~~v~~~~~~~--~~~~l~~~~-~~~i~i~~~~~~-   82 (315)
                      ...|++++|+|+|++||+|+.|++|+|||+.++.  .+..+. |...|.+++|+|  ++.+|++++ |++|++||+... 
T Consensus        13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred             cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence            7899999999999999999999999999998775  345555 899999999986  377888776 899999999643 


Q ss_pred             --EEEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCeE---EEEeccCCCCeEEEEEcCC-----------
Q psy9936          83 --ELHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGKI---VSDFSAKKGKLSVMTQNPY-----------  143 (315)
Q Consensus        83 --~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~p~-----------  143 (315)
                        ....+ .|...|.+++|+|+  +.+|++++.|+.|++||+..+..   ...+.+|...+.+++|+|+           
T Consensus        93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  172 (316)
T 3bg1_A           93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS  172 (316)
T ss_dssp             CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CC
T ss_pred             ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccc
Confidence              33333 46689999999998  78999999999999999987532   3456678889999999997           


Q ss_pred             ------CCEEEEEcCCCeEEEEcCCCC---cceeEeecccccEEEEEECCCC----CEEEEeeCCCcEEEEEccCCC--C
Q psy9936         144 ------NACICLGHRNGTVTMWSPTVQ---KPLASLLCHKAGIQSVAVNHTG----TYMATSAGDSQLRIWDVRNLE--G  208 (315)
Q Consensus       144 ------~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~sp~g----~~l~~~~~d~~i~iwd~~~~~--~  208 (315)
                            +++|++|+.|+.|++||++..   +++..+.+|..+|.+++|+|++    .+|++++.|++|++|++.+..  .
T Consensus       173 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~  252 (316)
T 3bg1_A          173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT  252 (316)
T ss_dssp             SCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC
T ss_pred             ccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc
Confidence                  468999999999999999755   4567788999999999999986    799999999999999998631  1


Q ss_pred             -CeeEeccC-CCceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         209 -PLNTFRTR-TPINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       209 -~~~~~~~~-~~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                       ....+..+ ..|.+++|+|+|.+  .++.|++|++|+.
T Consensus       253 ~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          253 WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence             12233333 46999999999953  4456999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.8e-37  Score=260.57  Aligned_cols=234  Identities=17%  Similarity=0.248  Sum_probs=192.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC-E-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI-E-   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~-~-   83 (315)
                      ...|.+++|+|+|++|++++.|+.|++|++.++.  ....+. |...|.+++|+|++++|++++ |+.|++||+... . 
T Consensus        61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence            6789999999999999999999999999987764  455565 889999999999999999887 899999998532 2 


Q ss_pred             --EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          84 --LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK--IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        84 --~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                        +..+ .|...|.+++|+|++.+|++++.|+.|++||+.++.  ....+.+|...|.+++|+|+|++|++|+.|++|++
T Consensus       141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~i  220 (345)
T 3fm0_A          141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI  220 (345)
T ss_dssp             EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEE
Confidence              2223 356889999999999999999999999999998875  44678899999999999999999999999999999


Q ss_pred             EcCCCC---------------cceeEeec-ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC---CCeeE-----ec
Q psy9936         159 WSPTVQ---------------KPLASLLC-HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE---GPLNT-----FR  214 (315)
Q Consensus       159 ~d~~~~---------------~~~~~~~~-~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~---~~~~~-----~~  214 (315)
                      ||....               +++..+.+ |...|.+++|+|++.+|++++.|+.|++|+.....   .+...     ..
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  300 (345)
T 3fm0_A          221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ  300 (345)
T ss_dssp             EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred             eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence            996422               12334444 88899999999999999999999999999987641   11111     23


Q ss_pred             cCC-CceeEEEccCC-eEE--EEcCCEEEecCC
Q psy9936         215 TRT-PINNLAFSQRG-LLA--TSRGNIVEFLKP  243 (315)
Q Consensus       215 ~~~-~v~~~~~s~~g-~~~--~~~~~~i~~~~~  243 (315)
                      .|. .|++++|+|++ .++  ++.|++|++|+.
T Consensus       301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred             cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence            444 69999999987 233  446999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.3e-39  Score=275.64  Aligned_cols=237  Identities=13%  Similarity=0.138  Sum_probs=194.5

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc--eEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK--TLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~   79 (315)
                      ..... ..+|++++|+|++++|++++.|+.|++|++.++  +....+. |...|.+++|+|++++|++++ |+.|++||+
T Consensus         5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            33444 689999999999999999999999999999988  5666665 888999999999999888887 899999999


Q ss_pred             CCCE----EEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe---EEEEecc-CCCCeEEEEEcCCCCEEEEE
Q psy9936          80 QGIE----LHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK---IVSDFSA-KKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        80 ~~~~----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~-~~~~v~~~~~~p~~~~l~~~  150 (315)
                      ....    ... ..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            5433    333 4567899999999999999999999999999999876   3667777 99999999999999999999


Q ss_pred             cCCCeEEEEcCC------------------CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCC---
Q psy9936         151 HRNGTVTMWSPT------------------VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP---  209 (315)
Q Consensus       151 ~~d~~i~i~d~~------------------~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~---  209 (315)
                      +.|+.|++||++                  .++++..+ +|...|.+++|+|+|++|++++.|+.|++||+.++ ..   
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~  242 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP-EQPPR  242 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST-TSCEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC-CCcce
Confidence            999999999985                  24455566 89999999999999999999999999999999998 65   


Q ss_pred             -eeEeccCC-CceeEEEccCCeEEE-EcCCEEEecCC
Q psy9936         210 -LNTFRTRT-PINNLAFSQRGLLAT-SRGNIVEFLKP  243 (315)
Q Consensus       210 -~~~~~~~~-~v~~~~~s~~g~~~~-~~~~~i~~~~~  243 (315)
                       +..+..|. +|.+++|+|+|.+++ +.++.+..|..
T Consensus       243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~  279 (377)
T 3dwl_C          243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQG  279 (377)
T ss_dssp             ECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECC
T ss_pred             eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEe
Confidence             66677666 699999999996444 45666667765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.6e-36  Score=251.60  Aligned_cols=236  Identities=15%  Similarity=0.229  Sum_probs=204.1

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CC
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GI   82 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~   82 (315)
                      +.. ..+|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++.+|++++ |+.|++||+. +.
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence            344 6789999999999999999999999999999999888877 888999999999999998886 8999999995 45


Q ss_pred             EEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          83 ELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        83 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      .+..+. |..+|.+++|+|++.+|++++.|+.|++||+.+++.+..+. .+...+..++|+|++++|++++.|+.|++||
T Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  220 (312)
T 4ery_A          141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  220 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            555554 55889999999999999999999999999999998877654 4566799999999999999999999999999


Q ss_pred             CCCCcceeEeecccccEE---EEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEE---
Q psy9936         161 PTVQKPLASLLCHKAGIQ---SVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATS---  233 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~---~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~---  233 (315)
                      +++++.+..+.+|...+.   .....+++.+|++|+.||.|++||+.++ ..+..+..|. .|.+++|+|++.++++   
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTDVVISTACHPTENIIASAAL  299 (312)
T ss_dssp             TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred             CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhccCCcEEEEeecCcCCceEEEEc
Confidence            999999988888775432   2233467899999999999999999998 8888888776 6899999999964443   


Q ss_pred             -cCCEEEecCC
Q psy9936         234 -RGNIVEFLKP  243 (315)
Q Consensus       234 -~~~~i~~~~~  243 (315)
                       .|++|++|+.
T Consensus       300 ~~d~~i~~W~~  310 (312)
T 4ery_A          300 ENDKTIKLWKS  310 (312)
T ss_dssp             TTTCCEEEEEC
T ss_pred             cCCccEEEecC
Confidence             3899999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-37  Score=267.84  Aligned_cols=260  Identities=13%  Similarity=0.152  Sum_probs=223.4

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEc----cCce------EEEEecC-----------CCceeEEEEeecCcEEE
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDW----VRKT------LACEMNV-----------MEEVYDIKWLHLETMFA   67 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~----~~~~------~~~~~~~-----------~~~v~~~~~~~~~~~l~   67 (315)
                      ..+|.+++|+|+++ +||+++.||.|++|++    .+++      ....+.+           ...|.+++|+|++++|+
T Consensus        45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  124 (425)
T 1r5m_A           45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV  124 (425)
T ss_dssp             CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred             cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence            58999999999999 9999999999999999    8877      3444433           55899999999999998


Q ss_pred             EEe-CCeEEEEeCCCCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC-----------
Q psy9936          68 VAQ-KDWVYIYDNQGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK-----------  134 (315)
Q Consensus        68 ~~~-~~~i~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------  134 (315)
                      +++ ++.|++|+.++..+..+. |...|.+++|+|++.+|++++.|+.|++||+.+++.+..+..+...           
T Consensus       125 ~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (425)
T 1r5m_A          125 TGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG  204 (425)
T ss_dssp             EEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred             EEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence            886 889999998777777665 5689999999999999999999999999999999999888877766           


Q ss_pred             ----eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCe
Q psy9936         135 ----LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL  210 (315)
Q Consensus       135 ----v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~  210 (315)
                          +.+++|+|++ .+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||++++ .++
T Consensus       205 ~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~  282 (425)
T 1r5m_A          205 DGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQ  282 (425)
T ss_dssp             -CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-SCS
T ss_pred             CcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-ccc
Confidence                8899999985 5888999999999999999999999999999999999999999999999999999999998 888


Q ss_pred             eEeccCC-CceeEEEccCCe-EEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhhH
Q psy9936         211 NTFRTRT-PINNLAFSQRGL-LATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIVR  271 (315)
Q Consensus       211 ~~~~~~~-~v~~~~~s~~g~-~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (315)
                      ..+..|. .+.+++|+|++. ++++.++.|++|+.                ..++|+|++.++++++.++.++.+....
T Consensus       283 ~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          283 NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             EEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             eEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            8887665 699999999995 34456999999986                5788999999999999888777665443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=257.37  Aligned_cols=232  Identities=17%  Similarity=0.202  Sum_probs=186.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-------ceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-------KTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      ..+|.+++|+|++++|++++.|+.|++|++..       .+....+. |...|.+++|+|++++|++++ |+.|++||+.
T Consensus        58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            56899999999999999999999999999853       34455565 889999999999999999887 8999999983


Q ss_pred             -C----CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC--eEEEEeccCCCCeEEEEEcCC--CCEEEEE
Q psy9936          81 -G----IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG--KIVSDFSAKKGKLSVMTQNPY--NACICLG  150 (315)
Q Consensus        81 -~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~p~--~~~l~~~  150 (315)
                       .    ..+..+ .|...|.+++|+|++.+|++++.|++|++||+.++  +++..+.+|...|.+++|+|+  +.+|++|
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  217 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG  217 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence             2    123333 46688999999999999999999999999999876  577888999999999999998  6789999


Q ss_pred             cCCCeEEEEcCCCC--------cceeEeec-ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC--CeeE-eccCC-
Q psy9936         151 HRNGTVTMWSPTVQ--------KPLASLLC-HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG--PLNT-FRTRT-  217 (315)
Q Consensus       151 ~~d~~i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~--~~~~-~~~~~-  217 (315)
                      +.|++|++||++++        .+...+.. |...|.+++|+|++ +|++++.||.|++||..++ .  ++.. ...|. 
T Consensus       218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~-~~~~~~~~~~~h~~  295 (330)
T 2hes_X          218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG-EWKVFAKRALCHGV  295 (330)
T ss_dssp             ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT-EEEEEEEESCTTTT
T ss_pred             eCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC-ceEEEecccccccc
Confidence            99999999998754        23444444 88999999999766 7999999999999999875 3  1222 23444 


Q ss_pred             -CceeEEEcc--CCe--EEEEcCCEEEecCC
Q psy9936         218 -PINNLAFSQ--RGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       218 -~v~~~~~s~--~g~--~~~~~~~~i~~~~~  243 (315)
                       .|.+++|+|  ++.  +.++.|++|++|++
T Consensus       296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          296 YEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence             689999999  564  34456999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.9e-36  Score=284.21  Aligned_cols=258  Identities=13%  Similarity=0.180  Sum_probs=224.4

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      ...+.. .+.|.+++|+|++++|++++.+|.|+|||+.+++....+. |..+|.+++|+|++++|++++ |+.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            344555 8899999999999999999999999999999999888887 889999999999999998887 7999999984


Q ss_pred             -CCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeE
Q psy9936          81 -GIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNP-YNACICLGHRNGTV  156 (315)
Q Consensus        81 -~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i  156 (315)
                       +..+..+. |...|.+++|+|++.+|++++.||.|++||+.++ .....+..|...+.+++|+| +++.|++++.||.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence             55555555 6689999999999999999999999999999987 67778889999999999999 88999999999999


Q ss_pred             EEEcCCCCcceeEeeccc-ccEEEEEECC--CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--E
Q psy9936         157 TMWSPTVQKPLASLLCHK-AGIQSVAVNH--TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--L  230 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~-~~i~~~~~sp--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~  230 (315)
                      ++||++++.....+..+. ..+.+++|+|  ++.+|++++.||.|++||+.++ .++..+..|. +|.+++|+|+|.  +
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~  244 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIII  244 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            999999988887777555 8899999999  9999999999999999999998 8888888765 699999999994  3


Q ss_pred             EEEcCCEEEecCC----------------Cceeecccccc--cccCCcch
Q psy9936         231 ATSRGNIVEFLKP----------------PEINFEPRRKA--NKAGGSVQ  262 (315)
Q Consensus       231 ~~~~~~~i~~~~~----------------~~~~~~~~~~~--~~~~~~~~  262 (315)
                      +++.|+.|++|++                ..++|+|++..  ++.+..++
T Consensus       245 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  294 (814)
T 3mkq_A          245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG  294 (814)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTE
T ss_pred             EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCC
Confidence            3445899999987                46788999874  55544433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-38  Score=273.67  Aligned_cols=261  Identities=16%  Similarity=0.248  Sum_probs=221.3

Q ss_pred             CCcEEEEEEcCCCC-EEEEE----------cCCCeEEEEEccCce---EEEEecCCCceeEEEEeecCcEEEEEe-CCeE
Q psy9936          10 QFGIYRMNYTKNGR-HLLLG----------GKRGHVAAFDWVRKT---LACEMNVMEEVYDIKWLHLETMFAVAQ-KDWV   74 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~----------~~dg~i~v~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i   74 (315)
                      ...|.+++|+|+++ +|+++          +.|+.|++|++.++.   ....+.|...|.+++|+|++.+|++++ |+.|
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence            45788999999997 99999          889999999998875   455566888999999999999998886 8999


Q ss_pred             EEEeCCC-----CEEEEee-cCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCe------EEEE---eccCCCCeEEE
Q psy9936          75 YIYDNQG-----IELHCLK-VLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGK------IVSD---FSAKKGKLSVM  138 (315)
Q Consensus        75 ~i~~~~~-----~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~------~~~~---~~~~~~~v~~~  138 (315)
                      ++|++..     ..+..+. |...|.+++|+|+ +.+|++++.|+.|++||+.+++      ....   +..|...+.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence            9999965     3444443 6689999999998 8999999999999999998876      3322   35688899999


Q ss_pred             EEcCC-CCEEEEEcCCCeEEEEcCCCCcceeEeecc------cccEEEEEECCCC-CEEEEeeCCC---cEEEEEccCCC
Q psy9936         139 TQNPY-NACICLGHRNGTVTMWSPTVQKPLASLLCH------KAGIQSVAVNHTG-TYMATSAGDS---QLRIWDVRNLE  207 (315)
Q Consensus       139 ~~~p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~sp~g-~~l~~~~~d~---~i~iwd~~~~~  207 (315)
                      +|+|+ +.+|++++.|+.|++||+++++.+..+..|      ...|.+++|+|++ .+|++++.|+   .|++||++++.
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            99999 789999999999999999999988888766      7899999999997 6999999998   99999999864


Q ss_pred             CCeeEec-cCC-CceeEEEcc-CCe--EEEEcCCEEEecCC----------------Cceeecccc-cccccCCcchhhh
Q psy9936         208 GPLNTFR-TRT-PINNLAFSQ-RGL--LATSRGNIVEFLKP----------------PEINFEPRR-KANKAGGSVQRAK  265 (315)
Q Consensus       208 ~~~~~~~-~~~-~v~~~~~s~-~g~--~~~~~~~~i~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~  265 (315)
                      .++..+. .|. .|.+++|+| ++.  +.++.|+.|++|++                .+++|+|++ .++++++.++.++
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence            6677776 554 799999999 774  34456899999986                689999998 8999999998777


Q ss_pred             hhhhh
Q psy9936         266 VKKIV  270 (315)
Q Consensus       266 ~~~~~  270 (315)
                      .+...
T Consensus       332 iw~~~  336 (416)
T 2pm9_A          332 VQTLQ  336 (416)
T ss_dssp             EEESC
T ss_pred             EEEcc
Confidence            66543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.8e-37  Score=261.41  Aligned_cols=259  Identities=17%  Similarity=0.175  Sum_probs=223.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-ceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC----EE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-KTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI----EL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~----~~   84 (315)
                      ..+|.+++|+|||++++++..++.+.+|.... ......+.|...|.+++|+|++++|++++++.|++|++...    .+
T Consensus         9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~   88 (337)
T 1gxr_A            9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPV   88 (337)
T ss_dssp             EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCS
T ss_pred             CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeee
Confidence            56889999999999999888777776665444 34455566999999999999999999999999999998532    12


Q ss_pred             EEe---ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 HCL---KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK--IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ..+   .+...|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...+.+++|+|++++|++++.|+.|++|
T Consensus        89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~  168 (337)
T 1gxr_A           89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence            222   466899999999999999999999999999999876  566778899999999999999999999999999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEcCCE
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSRGNI  237 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~  237 (315)
                      |+++++.+..+..|...+.+++|+|++++|++++.|+.|++||++++ +++..+....++.+++|+|++.  ++++.++.
T Consensus       169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ceEeeecCCCceEEEEECCCCCEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999999998 8888887777899999999995  33445899


Q ss_pred             EEecCC---------------CceeecccccccccCCcchhhhhhhh
Q psy9936         238 VEFLKP---------------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       238 i~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                      |++|+.               ..++|+|+++++++++.++.++.+..
T Consensus       248 i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence            998876               57899999999999998887666643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.7e-37  Score=260.99  Aligned_cols=256  Identities=12%  Similarity=0.146  Sum_probs=213.8

Q ss_pred             CCcEEEEEEcCC----CCEEEEEcCCCeEEEEEccCceEEEEec------CCCceeEEEEeec----CcEEEEEe-CCeE
Q psy9936          10 QFGIYRMNYTKN----GRHLLLGGKRGHVAAFDWVRKTLACEMN------VMEEVYDIKWLHL----ETMFAVAQ-KDWV   74 (315)
Q Consensus        10 ~~~v~~~~~s~~----~~~l~~~~~dg~i~v~~~~~~~~~~~~~------~~~~v~~~~~~~~----~~~l~~~~-~~~i   74 (315)
                      ..+|++++|+|+    ...+++++.++.|++|++.+++.+..+.      +...|.+++|+|+    +.+|++++ |+.|
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i   97 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII   97 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence            789999999984    4456666667799999999777655544      4578999999998    66888776 8999


Q ss_pred             EEEeCC-CCEEEEee-cCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEe---ccCCCCeEEEEEcCCCCEEE
Q psy9936          75 YIYDNQ-GIELHCLK-VLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDF---SAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        75 ~i~~~~-~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~  148 (315)
                      ++||+. +..+..+. |...|.+++|+| ++.+|++++.||.|++||+.+++.+..+   ..|...|.+++|+|++++|+
T Consensus        98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  177 (366)
T 3k26_A           98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM  177 (366)
T ss_dssp             EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred             EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE
Confidence            999985 55555555 678999999999 8999999999999999999999988888   68999999999999999999


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeec----------------------------ccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLC----------------------------HKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~----------------------------~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                      +++.|+.|++||+++++.+..+..                            |...|.+++|+  +.+|++++.|+.|++
T Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~  255 (366)
T 3k26_A          178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVC  255 (366)
T ss_dssp             EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEE
T ss_pred             EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEE
Confidence            999999999999998765544433                            89999999998  779999999999999


Q ss_pred             EEccCCCCC--------------eeEeccCC-CceeEEEccC--CeEEE--EcCCEEEecCC------------------
Q psy9936         201 WDVRNLEGP--------------LNTFRTRT-PINNLAFSQR--GLLAT--SRGNIVEFLKP------------------  243 (315)
Q Consensus       201 wd~~~~~~~--------------~~~~~~~~-~v~~~~~s~~--g~~~~--~~~~~i~~~~~------------------  243 (315)
                      ||+.+. ..              +..+..|. .|++++|+|+  +.+++  +.|+.|++|+.                  
T Consensus       256 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  334 (366)
T 3k26_A          256 WKPGKM-EDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC  334 (366)
T ss_dssp             EEESST-TCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred             EeCCCc-cccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence            999886 33              45555555 6999999999  85443  45899998876                  


Q ss_pred             ----CceeecccccccccCCcchhhhhhh
Q psy9936         244 ----PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       244 ----~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                          ..++|+|+++++++++.++.++.+.
T Consensus       335 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          335 GAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence                3578999999999999988776553

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-36  Score=264.18  Aligned_cols=249  Identities=16%  Similarity=0.229  Sum_probs=205.3

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEEe
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHCL   87 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~~   87 (315)
                      ..+....|+|++++|++++.||.|++||+.+++....+. |...|.+++|+|++++|++++ |+.|++||+. +..+..+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            344555789999999999999999999999999888875 899999999999999998887 8999999994 4444444


Q ss_pred             e-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc---CCCCeEE---------------------EEEcC
Q psy9936          88 K-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA---KKGKLSV---------------------MTQNP  142 (315)
Q Consensus        88 ~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~v~~---------------------~~~~p  142 (315)
                      . |...|.+++|+|++.+|++++.|+.|++||+++++.+..+..   +...+.+                     ++|+|
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            4 668999999999999999999999999999999998888864   3334444                     45578


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCCcceeEee-cccccEEEEEECCCCC-EEEEeeCCCcEEEEEccCCCCCeeEeccC-C-C
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQKPLASLL-CHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNLEGPLNTFRTR-T-P  218 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~-~  218 (315)
                      ++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|+.||.|++||++++..++..+..+ . +
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~  337 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP  337 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence            99999999999999999999988777765 5788999999999999 99999999999999999874557777653 3 5


Q ss_pred             ceeEEEccCCe-EEE-EcCCEEEecCC-------------------------Cceeeccccc----ccccCCc
Q psy9936         219 INNLAFSQRGL-LAT-SRGNIVEFLKP-------------------------PEINFEPRRK----ANKAGGS  260 (315)
Q Consensus       219 v~~~~~s~~g~-~~~-~~~~~i~~~~~-------------------------~~~~~~~~~~----~~~~~~~  260 (315)
                      +..+.| |++. +++ +.|+.|++|++                         ..++|+|++.    .++.|+.
T Consensus       338 v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~  409 (420)
T 3vl1_A          338 INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN  409 (420)
T ss_dssp             EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred             ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence            777755 4563 333 35899999974                         4578999988    4554443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.6e-37  Score=264.97  Aligned_cols=255  Identities=11%  Similarity=0.114  Sum_probs=214.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce------EEEEec-CCCceeEEEEeec----C---cEEEEEe-CCeE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT------LACEMN-VMEEVYDIKWLHL----E---TMFAVAQ-KDWV   74 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~------~~~~~~-~~~~v~~~~~~~~----~---~~l~~~~-~~~i   74 (315)
                      ..+|++++|+|  ++|++++.||.|++|++.+++      ....+. |...|.+++|+|+    +   .+|++++ |+.|
T Consensus        16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i   93 (397)
T 1sq9_A           16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   93 (397)
T ss_dssp             SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence            78999999999  799999999999999999887      444444 8899999999999    8   8888876 8999


Q ss_pred             EEEeCCCCE------EEEee-c-----CCceEEEEEc----CCCce-EEEEcCCCeEEEEEccC------CeEEE-----
Q psy9936          75 YIYDNQGIE------LHCLK-V-----LNKVTRMEFL----PYHFL-LATASEEGYLSWLDTSI------GKIVS-----  126 (315)
Q Consensus        75 ~i~~~~~~~------~~~~~-~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~~~d~~~------~~~~~-----  126 (315)
                      ++|++....      +..+. +     ...|.+++|+    |++.+ |++++.||.|++||+.+      ++.+.     
T Consensus        94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  173 (397)
T 1sq9_A           94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL  173 (397)
T ss_dssp             EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred             EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence            999984332      45554 3     3889999999    99999 99999999999999998      65555     


Q ss_pred             Ee-------ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec---c---cccEEEEEECCCCCEEEEee
Q psy9936         127 DF-------SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC---H---KAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       127 ~~-------~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~---~~~i~~~~~sp~g~~l~~~~  193 (315)
                      .+       ..|...+.+++|+|++ +|++++.|+.|++||+++++++..+..   |   ...|.+++|+|++.+|++++
T Consensus       174 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          174 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             eeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence            66       4478889999999999 999999999999999999999999998   8   99999999999999999999


Q ss_pred             CC---CcEEEEEccCCCCCeeEecc-------------CC-CceeEEEccCCeE--EEEcCCEEEecCC-----------
Q psy9936         194 GD---SQLRIWDVRNLEGPLNTFRT-------------RT-PINNLAFSQRGLL--ATSRGNIVEFLKP-----------  243 (315)
Q Consensus       194 ~d---~~i~iwd~~~~~~~~~~~~~-------------~~-~v~~~~~s~~g~~--~~~~~~~i~~~~~-----------  243 (315)
                      .|   +.|++||++++ +++..+..             |. .|.+++|+|++.+  +++.|+.|++|+.           
T Consensus       253 ~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  331 (397)
T 1sq9_A          253 DSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM  331 (397)
T ss_dssp             EETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Confidence            99   99999999998 88888876             55 6999999999953  3445899998865           


Q ss_pred             --------------------------Cceeecccc----------cccccCCcchhhhhhh
Q psy9936         244 --------------------------PEINFEPRR----------KANKAGGSVQRAKVKK  268 (315)
Q Consensus       244 --------------------------~~~~~~~~~----------~~~~~~~~~~~~~~~~  268 (315)
                                                ..++|+|++          .++++++.++.++.+.
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          332 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence                                      246788988          6888888887766543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.9e-37  Score=265.86  Aligned_cols=238  Identities=13%  Similarity=0.183  Sum_probs=197.1

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-------EEEEec-CCCceeEEEEeec-CcEEEEEe-CCe
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-------LACEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDW   73 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-------~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~   73 (315)
                      ..+.. ...|.+++|+|+|++|++|+.|+.+++|++.+..       ....+. |.+.+.++.|+|+ +..|++++ |++
T Consensus       102 ~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~  181 (380)
T 3iz6_a          102 HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT  181 (380)
T ss_dssp             EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred             eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence            34555 6779999999999999999999999999986532       122333 7888999999996 44566655 899


Q ss_pred             EEEEeCC-CCEEEEe------ecCCceEEEEEcC-CCceEEEEcCCCeEEEEEcc-CCeEEEEeccCCCCeEEEEEcCCC
Q psy9936          74 VYIYDNQ-GIELHCL------KVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTS-IGKIVSDFSAKKGKLSVMTQNPYN  144 (315)
Q Consensus        74 i~i~~~~-~~~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~~p~~  144 (315)
                      |++||+. +..+..+      .|...|.+++|+| ++.+|++|+.|++|++||++ .+..+..+.+|.+.|.+++|+|++
T Consensus       182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~  261 (380)
T 3iz6_a          182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG  261 (380)
T ss_dssp             EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred             EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence            9999995 4444443      2557899999987 78999999999999999998 457788889999999999999999


Q ss_pred             CEEEEEcCCCeEEEEcCCCCcceeEeeccc-------ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEe----
Q psy9936         145 ACICLGHRNGTVTMWSPTVQKPLASLLCHK-------AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF----  213 (315)
Q Consensus       145 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~----  213 (315)
                      ++|++|+.|++|++||+++++++..+..+.       ..|++++|+|+|++|++|+.||.|++||+..+ +.+..+    
T Consensus       262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~  340 (380)
T 3iz6_a          262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTLQ  340 (380)
T ss_dssp             SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCSC
T ss_pred             CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEeccc
Confidence            999999999999999999998887776443       24889999999999999999999999999887 666665    


Q ss_pred             ccCC-CceeEEEccCCeEEE--EcCCEEEecCC
Q psy9936         214 RTRT-PINNLAFSQRGLLAT--SRGNIVEFLKP  243 (315)
Q Consensus       214 ~~~~-~v~~~~~s~~g~~~~--~~~~~i~~~~~  243 (315)
                      ..|. .|++++|+|+|.+++  +.|++|++|+.
T Consensus       341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             SSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             CCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            3454 699999999996444  45899999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-36  Score=262.89  Aligned_cols=254  Identities=15%  Similarity=0.228  Sum_probs=218.1

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEEe-
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHCL-   87 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~~-   87 (315)
                      +.+++|++  ..+++++.||.|++|++.+++....+.  |...|.+++|+|++.+|++++ ||.|++||+. +..+..+ 
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  173 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA  173 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence            44566765  457778899999999999998877665  678899999999999999887 8999999995 4455554 


Q ss_pred             ecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          88 KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS-IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        88 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                      .|...|.+++|+  +.+|++++.||.|++||++ .+..+..+..|.+.|.+++|+|++++|++|+.|+.|++||++++++
T Consensus       174 ~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  251 (401)
T 4aez_A          174 GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP  251 (401)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE
T ss_pred             CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc
Confidence            466899999994  5799999999999999998 4667788889999999999999999999999999999999999999


Q ss_pred             eeEeecccccEEEEEECCCCC-EEEEee--CCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEE----cCCEEE
Q psy9936         167 LASLLCHKAGIQSVAVNHTGT-YMATSA--GDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATS----RGNIVE  239 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~----~~~~i~  239 (315)
                      +..+..|...|.+++|+|++. ++++++  .|+.|++||+.++ .++..+..+..+.+++|+|++.++++    .++.|+
T Consensus       252 ~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~  330 (401)
T 4aez_A          252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS  330 (401)
T ss_dssp             EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEE
T ss_pred             cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEE
Confidence            999999999999999999765 666654  7999999999998 88888888888999999999954433    489999


Q ss_pred             ecCC------------------CceeecccccccccCCcchhhhhhhhhH
Q psy9936         240 FLKP------------------PEINFEPRRKANKAGGSVQRAKVKKIVR  271 (315)
Q Consensus       240 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (315)
                      +|+.                  .+++|+|++.++++++.++.++.+....
T Consensus       331 v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             EEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             EEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            8865                  6789999999999999999887776543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=249.32  Aligned_cols=257  Identities=10%  Similarity=0.085  Sum_probs=219.7

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      ...+.. ...|.+++| |++++|++++.||.|++||+.+++....+. |...|.+++|+|++.+|++++ |+.|++|++.
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~   89 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF   89 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence            345566 789999999 999999999999999999999988777766 889999999999999998886 8999999983


Q ss_pred             C----CEEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCC
Q psy9936          81 G----IELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-YNACICLGHRNG  154 (315)
Q Consensus        81 ~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~  154 (315)
                      .    ..+.. ..|...|.+++|  ++.++++++.|+.|++||  .++....+..|...+.+++|+| +++++++++.|+
T Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  165 (313)
T 3odt_A           90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK  165 (313)
T ss_dssp             CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred             ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence            2    22333 346689999999  577999999999999999  6788888889999999999988 899999999999


Q ss_pred             eEEEEcCCCCcceeEeec-ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-EE
Q psy9936         155 TVTMWSPTVQKPLASLLC-HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-LA  231 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~  231 (315)
                      .|++||  ..+.+..+.. |...+.+++|+|++. +++++.|+.|++||++++ +++..+..|. +|++++|+|++. ++
T Consensus       166 ~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~  241 (313)
T 3odt_A          166 TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNGDIVS  241 (313)
T ss_dssp             CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred             CEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCCCEEE
Confidence            999999  4456667776 889999999999998 999999999999999998 8888888765 699999999996 44


Q ss_pred             EEcCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhh
Q psy9936         232 TSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       232 ~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (315)
                      ++.|+.|++|+.                ..++|+|+++++ +++.++.++.+...
T Consensus       242 ~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg~i~iw~~~  295 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDNLVRIFSQE  295 (313)
T ss_dssp             EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTSCEEEEESC
T ss_pred             EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCCcEEEEeCC
Confidence            556999999987                578899999855 67777777766543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=267.17  Aligned_cols=237  Identities=15%  Similarity=0.186  Sum_probs=196.5

Q ss_pred             EEe-eC-CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccC---ce---EEEEecCCCceeEEEEeecCcEEEEEe-CCeE
Q psy9936           5 FDL-DL-QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVR---KT---LACEMNVMEEVYDIKWLHLETMFAVAQ-KDWV   74 (315)
Q Consensus         5 ~~~-~~-~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~---~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i   74 (315)
                      ..+ .. .+.|++++|+| ++++|++|+.||.|+|||+.+   +.   ....+.|...|.+++|+|++.+|++++ |+.|
T Consensus        56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  135 (437)
T 3gre_A           56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI  135 (437)
T ss_dssp             EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            445 44 68999999999 999999999999999999876   33   344556899999999999999888877 8999


Q ss_pred             EEEeCC----CCEEEEee-------------cCCceEEEE--EcCCCceEEEEcCCCeEEEEEccCCeEEEEecc--CCC
Q psy9936          75 YIYDNQ----GIELHCLK-------------VLNKVTRME--FLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA--KKG  133 (315)
Q Consensus        75 ~i~~~~----~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~  133 (315)
                      ++||+.    +.......             +...+.++.  +++++.+|++++.|+.|++||+++++.+..+..  |..
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~  215 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG  215 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence            999983    33332221             335566666  567899999999999999999999999999987  889


Q ss_pred             CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee-cccccEEEEEECC----CCCEEEEeeCCCcEEEEEccCCCC
Q psy9936         134 KLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL-CHKAGIQSVAVNH----TGTYMATSAGDSQLRIWDVRNLEG  208 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~sp----~g~~l~~~~~d~~i~iwd~~~~~~  208 (315)
                      .|++++|+|++++|++|+.||.|++||+++++++..+. .|..+|.+++|+|    ++.+|++|+.|+.|++||++++ .
T Consensus       216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~  294 (437)
T 3gre_A          216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-H  294 (437)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-E
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-c
Confidence            99999999999999999999999999999999988886 7888999996664    5779999999999999999987 6


Q ss_pred             CeeEeccC---------------------------CCceeEEEccCC-eEEE-EcCCEEEecCC
Q psy9936         209 PLNTFRTR---------------------------TPINNLAFSQRG-LLAT-SRGNIVEFLKP  243 (315)
Q Consensus       209 ~~~~~~~~---------------------------~~v~~~~~s~~g-~~~~-~~~~~i~~~~~  243 (315)
                      ++..+..+                           ..|++++|+ ++ .+++ +.|+.|++|+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred             EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence            66665532                           147889999 55 3443 34999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-35  Score=275.67  Aligned_cols=234  Identities=15%  Similarity=0.219  Sum_probs=202.3

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      +.. ...|.+++|+|++++|++|+.||.|+|||+.+++....+. |...|.+++|+|++++|++++ |++|++||..+..
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence            444 6789999999999999999999999999999999888776 899999999999999888876 8999999997665


Q ss_pred             EEEe-----ecCCceEEEEEcCCC--ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          84 LHCL-----KVLNKVTRMEFLPYH--FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        84 ~~~~-----~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      ...+     .|...|.+++|+|++  ..+++++.|++|++||+.+++....+.+|.+.|++++|+|++++|++|+.|+.|
T Consensus       506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV  585 (694)
T ss_dssp             EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred             ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            4443     255779999999986  589999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-------------------
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-------------------  217 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------------  217 (315)
                      ++||+++++.+..+. +...|.+++|+|++.+|++++ ++.|++||++++ ..+..+..+.                   
T Consensus       586 ~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (694)
T 3dm0_A          586 LLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKVDLKAEAEKADNSGPAATKRKV  662 (694)
T ss_dssp             EEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECCCCC----------------CC
T ss_pred             EEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhccccccccccccccccccCCcee
Confidence            999999998888776 457899999999999887776 456999999987 6666554221                   


Q ss_pred             -CceeEEEccCCeEE--EEcCCEEEecCC
Q psy9936         218 -PINNLAFSQRGLLA--TSRGNIVEFLKP  243 (315)
Q Consensus       218 -~v~~~~~s~~g~~~--~~~~~~i~~~~~  243 (315)
                       .+++++|+|+|.++  ++.|+.|++|++
T Consensus       663 ~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          663 IYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence             25789999999544  446999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-37  Score=271.51  Aligned_cols=256  Identities=12%  Similarity=0.113  Sum_probs=213.1

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe--ec
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL--KV   89 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~--~~   89 (315)
                      +++++|+|++++|++++.||.|++||+.+++....+.....+....|+|++++|++++ |+.|++||+........  .|
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h  138 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH  138 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence            4478999999999999999999999998887665555444455567899999998886 89999999976554443  56


Q ss_pred             CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeE
Q psy9936          90 LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLAS  169 (315)
Q Consensus        90 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~  169 (315)
                      ...|.+++|+|++.+|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus       139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  218 (420)
T 3vl1_A          139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT  218 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eec---ccccEEE---------------------EEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-C-CCceeEE
Q psy9936         170 LLC---HKAGIQS---------------------VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-R-TPINNLA  223 (315)
Q Consensus       170 ~~~---~~~~i~~---------------------~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-~~v~~~~  223 (315)
                      +..   |...+.+                     ++|+|++++|++++.||.|++||++++ ..+..+.. | ..+.+++
T Consensus       219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~  297 (420)
T 3vl1_A          219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-EQTIQLPSKFTCSCNSLT  297 (420)
T ss_dssp             ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-CEEEEECCTTSSCEEEEE
T ss_pred             eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-ceeEEcccccCCCceeEE
Confidence            874   3344444                     455789999999999999999999998 66666543 3 3699999


Q ss_pred             EccCCe-E--EEEcCCEEEecCC------------------CceeecccccccccCCcchhhhhhhhh
Q psy9936         224 FSQRGL-L--ATSRGNIVEFLKP------------------PEINFEPRRKANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       224 ~s~~g~-~--~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (315)
                      |+|++. +  +++.|+.|++|+.                  ..+ +.|++.++++++.++.++.+...
T Consensus       298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEEC
T ss_pred             EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEecc
Confidence            999984 3  3345899999977                  223 45678899999999887777543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=253.41  Aligned_cols=237  Identities=18%  Similarity=0.217  Sum_probs=198.3

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc--CceEEEEec-CCCceeEEEEeec--CcEEEEEe-CCeEEEEeC
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV--RKTLACEMN-VMEEVYDIKWLHL--ETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~-~~~i~i~~~   79 (315)
                      +.. ..+|++++|+|++++|++++.||.|++|++.  +++....+. |...|.+++|+|+  +.+|++++ |+.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   86 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   86 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence            444 7899999999999999999999999999998  556666666 8899999999987  88888876 899999999


Q ss_pred             CCCE---EEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCC--eEEEEeccCCCCeEEEEEcC---------
Q psy9936          80 QGIE---LHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIG--KIVSDFSAKKGKLSVMTQNP---------  142 (315)
Q Consensus        80 ~~~~---~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~p---------  142 (315)
                      ....   +..+ .|...|.+++|+|+  +.+|++++.|+.|++||+.++  .....+..|...|.+++|+|         
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence            6543   3333 35689999999999  999999999999999999877  34445678999999999999         


Q ss_pred             ----CCCEEEEEcCCCeEEEEcCCCCc----ceeEeecccccEEEEEECCC---CCEEEEeeCCCcEEEEEccCCCCCe-
Q psy9936         143 ----YNACICLGHRNGTVTMWSPTVQK----PLASLLCHKAGIQSVAVNHT---GTYMATSAGDSQLRIWDVRNLEGPL-  210 (315)
Q Consensus       143 ----~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~sp~---g~~l~~~~~d~~i~iwd~~~~~~~~-  210 (315)
                          ++.+|++++.|+.|++||++++.    .+..+.+|...|.+++|+|+   +.+|++++.||.|++||++++..+. 
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  246 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK  246 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce
Confidence                69999999999999999998765    34567789999999999999   8999999999999999999862221 


Q ss_pred             -eEec---cCCCceeEEEccCCe--EEEEcCCEEEecCC
Q psy9936         211 -NTFR---TRTPINNLAFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       211 -~~~~---~~~~v~~~~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                       ....   ....|++++|+|+|.  ++++.|+.|++|+.
T Consensus       247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence             2222   223699999999995  34457999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-35  Score=255.01  Aligned_cols=188  Identities=16%  Similarity=0.150  Sum_probs=157.3

Q ss_pred             eeEEEEeecCcEEEEEe---CCeEEEEeCC-CCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE--
Q psy9936          54 VYDIKWLHLETMFAVAQ---KDWVYIYDNQ-GIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD--  127 (315)
Q Consensus        54 v~~~~~~~~~~~l~~~~---~~~i~i~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--  127 (315)
                      +.+++|+|||+++++++   |++|++||+. +..+..+.+...|.+++|+|+|+++++++.+ .+.+|+..++..+..  
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee
Confidence            66799999999987654   7899999995 4556667788899999999999999999855 577777777765543  


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEcCCC----eEEEEcCCCCcc----eeEeecccccEEEEEECCCCCEEEEeeCCCcEE
Q psy9936         128 FSAKKGKLSVMTQNPYNACICLGHRNG----TVTMWSPTVQKP----LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLR  199 (315)
Q Consensus       128 ~~~~~~~v~~~~~~p~~~~l~~~~~d~----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~  199 (315)
                      ...|...+.+++|+|+++++++++.|+    .+++||+.....    ...+.+|..+|++++|+|+|++||+|+.|++|+
T Consensus       215 ~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence            446788899999999999999998877    688999876543    345678999999999999999999999999999


Q ss_pred             EEEccCCCCCeeEe-ccCC-CceeEEEccCCeEEE--EcCCEEEecCC
Q psy9936         200 IWDVRNLEGPLNTF-RTRT-PINNLAFSQRGLLAT--SRGNIVEFLKP  243 (315)
Q Consensus       200 iwd~~~~~~~~~~~-~~~~-~v~~~~~s~~g~~~~--~~~~~i~~~~~  243 (315)
                      |||++++ +++..+ ..|. +|++++|+|||.+++  +.|++|++|++
T Consensus       295 iwd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          295 LVKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             EEECCCC-cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            9999998 888775 5666 699999999996544  46999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-35  Score=252.25  Aligned_cols=248  Identities=15%  Similarity=0.121  Sum_probs=210.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce----EEEEecCCCceeEEEEeecCc-EEEEEe-CCeEEEEeC-CCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT----LACEMNVMEEVYDIKWLHLET-MFAVAQ-KDWVYIYDN-QGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~~~i~i~~~-~~~   82 (315)
                      .+.|.+++|+|++++|++++.||.|++|++.++.    ......|...|.+++|+|++. +|++++ ++.|++||+ .+.
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            6899999999999999999999999999998877    555566889999999999999 888776 899999999 876


Q ss_pred             EEEEee---cCCceEEEEEcCCCceEEEEcCCCeEEEEEccC---------CeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q psy9936          83 ELHCLK---VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI---------GKIVSDFSAKKGKLSVMTQNPYNACICLG  150 (315)
Q Consensus        83 ~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  150 (315)
                      ....+.   |...|.+++|+| +.+|++++.|+.|++||+++         ++++..+. |...+.+++|+|++  ++++
T Consensus        91 ~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~  166 (342)
T 1yfq_A           91 SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVG  166 (342)
T ss_dssp             SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEE
T ss_pred             ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEE
Confidence            666654   668999999999 99999999999999999987         66666666 88899999999987  8999


Q ss_pred             cCCCeEEEEcCCC-Ccc--eeEeecccccEEEEEECC-CCCEEEEeeCCCcEEEEEccCC-----CCCeeEeccCC----
Q psy9936         151 HRNGTVTMWSPTV-QKP--LASLLCHKAGIQSVAVNH-TGTYMATSAGDSQLRIWDVRNL-----EGPLNTFRTRT----  217 (315)
Q Consensus       151 ~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~sp-~g~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~----  217 (315)
                      +.|+.|++||+++ +..  ......|...+.+++|+| +++++++++.||.|++|++...     ..+...+..|.    
T Consensus       167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
T 1yfq_A          167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK  246 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred             eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc
Confidence            9999999999998 543  233446888999999999 9999999999999999999875     36666776653    


Q ss_pred             ------CceeEEEccCCe--EEEEcCCEEEecCC-----------------CceeecccccccccCCcchh
Q psy9936         218 ------PINNLAFSQRGL--LATSRGNIVEFLKP-----------------PEINFEPRRKANKAGGSVQR  263 (315)
Q Consensus       218 ------~v~~~~~s~~g~--~~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  263 (315)
                            +|.+++|+|++.  ++++.|+.|++|+.                 .+++  |++.++++++.++.
T Consensus       247 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence                  699999999994  34456899999987                 1233  88899999988875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-35  Score=254.37  Aligned_cols=196  Identities=12%  Similarity=0.103  Sum_probs=170.9

Q ss_pred             CcEEEEEEcCCCCEEEEE--cCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEe
Q psy9936          11 FGIYRMNYTKNGRHLLLG--GKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCL   87 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~--~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~   87 (315)
                      ..+.+++|||||++++++  +.|++|+|||+.+++.+..+.|...|.+++|+|||+++++++++.+.+|+. .+..+...
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARK  213 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEE
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeee
Confidence            457899999999987654  468999999999999999999999999999999999999999887777776 45444332


Q ss_pred             ---ecCCceEEEEEcCCCceEEEEcCCC----eEEEEEccCCeE----EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          88 ---KVLNKVTRMEFLPYHFLLATASEEG----YLSWLDTSIGKI----VSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        88 ---~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                         .|...|.+++|+|++.++++++.++    .+.+|++.....    ...+..|...|++++|+|+|++||+|+.|++|
T Consensus       214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V  293 (365)
T 4h5i_A          214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI  293 (365)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE
Confidence               2456799999999999999998877    588899876643    34567889999999999999999999999999


Q ss_pred             EEEcCCCCcceeEe-ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         157 TMWSPTVQKPLASL-LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       157 ~i~d~~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +|||+++++++..+ .+|..+|++++|+|||++||+||.|++|+|||+...
T Consensus       294 ~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          294 ALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999875 689999999999999999999999999999999653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2e-35  Score=256.10  Aligned_cols=238  Identities=16%  Similarity=0.313  Sum_probs=205.4

Q ss_pred             EEEeeC-CCcEEEEEEcCC----C---CEEEEEcCCCeEEEEEccCceE-----EEEec-C-----CCceeEEEEe----
Q psy9936           4 QFDLDL-QFGIYRMNYTKN----G---RHLLLGGKRGHVAAFDWVRKTL-----ACEMN-V-----MEEVYDIKWL----   60 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~----~---~~l~~~~~dg~i~v~~~~~~~~-----~~~~~-~-----~~~v~~~~~~----   60 (315)
                      ...+.. ..+|.+++|+|+    +   ++|++++.||.|++|++.+++.     ...+. |     ...|.+++|+    
T Consensus        55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence            455555 789999999999    9   9999999999999999988875     55655 5     4899999999    


Q ss_pred             ecCcE-EEEEe-CCeEEEEeCCC-------CEEE-----Eee--------cCCceEEEEEcCCCceEEEEcCCCeEEEEE
Q psy9936          61 HLETM-FAVAQ-KDWVYIYDNQG-------IELH-----CLK--------VLNKVTRMEFLPYHFLLATASEEGYLSWLD  118 (315)
Q Consensus        61 ~~~~~-l~~~~-~~~i~i~~~~~-------~~~~-----~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  118 (315)
                      |++.+ |++++ |+.|++||+..       ..+.     .+.        +...+.+++|+|++ +|++++.|+.|++||
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            99988 88775 89999999854       3222     332        46889999999999 999999999999999


Q ss_pred             ccCCeEEEEecc---C---CCCeEEEEEcCCCCEEEEEcCC---CeEEEEcCCCCcceeEeec-------------cccc
Q psy9936         119 TSIGKIVSDFSA---K---KGKLSVMTQNPYNACICLGHRN---GTVTMWSPTVQKPLASLLC-------------HKAG  176 (315)
Q Consensus       119 ~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~~~  176 (315)
                      +++++.+..+..   |   ...+.+++|+|++++|++++.|   +.|++||+++++++..+.+             |...
T Consensus       214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 1sq9_A          214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW  293 (397)
T ss_dssp             TTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred             CCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence            999999999988   8   9999999999999999999999   9999999999999999988             9999


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec------cC----------------CCceeEEEccCC------
Q psy9936         177 IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR------TR----------------TPINNLAFSQRG------  228 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~----------------~~v~~~~~s~~g------  228 (315)
                      |.+++|+|++++|++++.|+.|++||++++ +++..+.      .|                .+|++++|+|+|      
T Consensus       294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~  372 (397)
T 1sq9_A          294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG  372 (397)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence            999999999999999999999999999998 8888888      55                479999999997      


Q ss_pred             -----eE-EEEcCCEEEecCC
Q psy9936         229 -----LL-ATSRGNIVEFLKP  243 (315)
Q Consensus       229 -----~~-~~~~~~~i~~~~~  243 (315)
                           .+ .++.|+.|++|+.
T Consensus       373 ~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          373 ADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             CTTSCEEEEEETTTEEEEEEE
T ss_pred             ccccceEEEecCCCcEEEEEc
Confidence                 33 3445999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.3e-35  Score=247.97  Aligned_cols=234  Identities=16%  Similarity=0.201  Sum_probs=194.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc----eEEEEec-CCCceeEEEEee--cCcEEEEEe-CCeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK----TLACEMN-VMEEVYDIKWLH--LETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      ...|++++|+|++++|++++.||.|++||+.++    +....+. |...|.+++|+|  ++.+|++++ |+.|++||+..
T Consensus        11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred             ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence            789999999999999999999999999999876    3455555 889999999999  588888876 89999999854


Q ss_pred             C----------EEEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCeEEEEec-------------cCCCCe
Q psy9936          82 I----------ELHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGKIVSDFS-------------AKKGKL  135 (315)
Q Consensus        82 ~----------~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------~~~~~v  135 (315)
                      .          .+..+ .|...|.+++|+|+  +.+|++++.||.|++||+++++.+..+.             .|...+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (351)
T 3f3f_A           91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD  170 (351)
T ss_dssp             TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred             CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence            2          23333 46689999999999  9999999999999999998875443322             577789


Q ss_pred             EEEEEcCC---CCEEEEEcCCCeEEEEcCCCCcc--eeEeecccccEEEEEECCCC----CEEEEeeCCCcEEEEEccCC
Q psy9936         136 SVMTQNPY---NACICLGHRNGTVTMWSPTVQKP--LASLLCHKAGIQSVAVNHTG----TYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       136 ~~~~~~p~---~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~sp~g----~~l~~~~~d~~i~iwd~~~~  206 (315)
                      .+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|+|++    .+|++++.||.|++||++..
T Consensus       171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            99999997   88999999999998888887764  66777899999999999998    89999999999999999874


Q ss_pred             C---------------------------------------------CCeeEeccCC-CceeEEEccCCe--EEEEcCCEE
Q psy9936         207 E---------------------------------------------GPLNTFRTRT-PINNLAFSQRGL--LATSRGNIV  238 (315)
Q Consensus       207 ~---------------------------------------------~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~~~i  238 (315)
                      .                                             .++..+..|. .|++++|+|++.  +.++.|+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             C---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred             cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcE
Confidence            1                                             2344455554 699999999984  344458999


Q ss_pred             EecCC
Q psy9936         239 EFLKP  243 (315)
Q Consensus       239 ~~~~~  243 (315)
                      ++|+.
T Consensus       331 ~iw~~  335 (351)
T 3f3f_A          331 RLWKA  335 (351)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.4e-36  Score=256.90  Aligned_cols=231  Identities=11%  Similarity=0.148  Sum_probs=198.9

Q ss_pred             CCcEEEEEEcCC----CCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEee-cCcEEEEEe-CCeEEEEeCCC-
Q psy9936          10 QFGIYRMNYTKN----GRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDNQG-   81 (315)
Q Consensus        10 ~~~v~~~~~s~~----~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~~~-   81 (315)
                      ...|++++|+|+    +.+|++++.||.|++||+.+++.+..+. |...|.+++|+| ++.+|++++ |+.|++||+.. 
T Consensus        69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            477999999999    6799999999999999999999888887 889999999999 889888887 89999999964 


Q ss_pred             CEEEEe----ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec----------------------------
Q psy9936          82 IELHCL----KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS----------------------------  129 (315)
Q Consensus        82 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----------------------------  129 (315)
                      ..+..+    .|...|.+++|+|++.+|++++.||.|++||+++++....+.                            
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            444444    366899999999999999999999999999998765443333                            


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc--------------eeEeecccccEEEEEECCC--CCEEEEee
Q psy9936         130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP--------------LASLLCHKAGIQSVAVNHT--GTYMATSA  193 (315)
Q Consensus       130 ~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~i~~~~~sp~--g~~l~~~~  193 (315)
                      .|...|.+++|+  +++|++++.|+.|++||++++..              +..+..|...|++++|+|+  +++|++|+
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            388999999998  77999999999999999987654              6777889999999999999  99999999


Q ss_pred             CCCcEEEEEccCCCCCee----EeccC---CCceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         194 GDSQLRIWDVRNLEGPLN----TFRTR---TPINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       194 ~d~~i~iwd~~~~~~~~~----~~~~~---~~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                      .||.|++||+.++ .+..    .+..|   .+|++++|+|++.+  .++.|+.|++|++
T Consensus       307 ~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          307 QVGKLYVWDLEVE-DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             TTSCEEEEECCSS-SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             cCCcEEEEECCCC-CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            9999999999987 5433    56665   47999999999953  4456899999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=253.15  Aligned_cols=257  Identities=11%  Similarity=0.168  Sum_probs=209.5

Q ss_pred             CCcEEEEEEcCCCCEE-EEEcC---CCeEEEEEccCceEEEE--ecCCCceeEEEEeec---CcEEEEEe-CCeEEEEeC
Q psy9936          10 QFGIYRMNYTKNGRHL-LLGGK---RGHVAAFDWVRKTLACE--MNVMEEVYDIKWLHL---ETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l-~~~~~---dg~i~v~~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~-~~~i~i~~~   79 (315)
                      ...|.+++|+|++..+ ++++.   ||.|++|++.+++....  +.|...|.+++|+|+   +.+|++++ |+.|++||+
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            7899999999999755 56655   89999999998876443  458899999999998   68888776 899999999


Q ss_pred             CCC--EEEEe-ecCCceEEEEE------cCCCceEEEEcCCCeEEEEEccCCe-EEEEeccCCC----CeEEEE----Ec
Q psy9936          80 QGI--ELHCL-KVLNKVTRMEF------LPYHFLLATASEEGYLSWLDTSIGK-IVSDFSAKKG----KLSVMT----QN  141 (315)
Q Consensus        80 ~~~--~~~~~-~~~~~v~~~~~------~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~----~v~~~~----~~  141 (315)
                      ...  .+..+ .|...|.++.|      +|++.+|++++.|+.|++||+.++. .+..+..|.+    .+.+++    |+
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  177 (357)
T 3i2n_A           98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN  177 (357)
T ss_dssp             TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred             CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence            533  34444 46688999955      6789999999999999999999886 6777766554    788888    78


Q ss_pred             CCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECC---CCCEEEEeeCCCcEEEEEccCCCCCeeEec----
Q psy9936         142 PYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNH---TGTYMATSAGDSQLRIWDVRNLEGPLNTFR----  214 (315)
Q Consensus       142 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp---~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~----  214 (315)
                      |++++|++++.|+.|++||+++++.... ..|...|.+++|+|   ++.+|++++.||.|++||++++ .++..+.    
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~  255 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASVSE  255 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEEEE
T ss_pred             CCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-Ccccceeeecc
Confidence            9999999999999999999999876544 56889999999999   9999999999999999999987 6655543    


Q ss_pred             -cCC-CceeEEEccCCe-EE--EEcCCEEEecCC-----------------------------------Cceeecccccc
Q psy9936         215 -TRT-PINNLAFSQRGL-LA--TSRGNIVEFLKP-----------------------------------PEINFEPRRKA  254 (315)
Q Consensus       215 -~~~-~v~~~~~s~~g~-~~--~~~~~~i~~~~~-----------------------------------~~~~~~~~~~~  254 (315)
                       .|. .|++++|+|++. ++  ++.|+.|++|+.                                   .+++|+|++++
T Consensus       256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence             454 699999999985 33  345899999974                                   46889999999


Q ss_pred             cc-cCCcchhhhhhh
Q psy9936         255 NK-AGGSVQRAKVKK  268 (315)
Q Consensus       255 ~~-~~~~~~~~~~~~  268 (315)
                      ++ +++.++.++.+.
T Consensus       336 l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          336 LCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEEEETTSEEEEEE
T ss_pred             EEEEecCCCcEEEEE
Confidence            98 788887766553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.2e-35  Score=287.27  Aligned_cols=261  Identities=15%  Similarity=0.224  Sum_probs=227.1

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CC
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GI   82 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~   82 (315)
                      +.. ...|++++|+|+|++|++|+.||.|++||+.+++.+..+. |...|.+++|+|++++|++++ |+.|++||+. +.
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~  690 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK  690 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence            344 7889999999999999999999999999999999888887 889999999999999999887 8999999994 55


Q ss_pred             EEEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          83 ELHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        83 ~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      .+..+ .|...|.+++|+|+  +.++++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|
T Consensus       691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw  770 (1249)
T 3sfz_A          691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW  770 (1249)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred             eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence            55555 45689999999994  5689999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeEe-------------------------------------------------------ecccccEEEEEECC
Q psy9936         160 SPTVQKPLASL-------------------------------------------------------LCHKAGIQSVAVNH  184 (315)
Q Consensus       160 d~~~~~~~~~~-------------------------------------------------------~~~~~~i~~~~~sp  184 (315)
                      |+++++....+                                                       .+|...|.+++|+|
T Consensus       771 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp  850 (1249)
T 3sfz_A          771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP  850 (1249)
T ss_dssp             EGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred             eCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC
Confidence            98765433222                                                       15778899999999


Q ss_pred             CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EEEEcCCEEEecCC------------------
Q psy9936         185 TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LATSRGNIVEFLKP------------------  243 (315)
Q Consensus       185 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~~~i~~~~~------------------  243 (315)
                      ++.++++++.|+.|++||+.++ .++..+..|. .|.+++|+|+|.  +.++.|+.+++|+.                  
T Consensus       851 ~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  929 (1249)
T 3sfz_A          851 YDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV  929 (1249)
T ss_dssp             STTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence            9999999999999999999998 8888888776 699999999994  44556899999972                  


Q ss_pred             -----------------------------------CceeecccccccccCCcchhhhhhh
Q psy9936         244 -----------------------------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       244 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                                                         .+++|+|++.+++.|+.++.+....
T Consensus       930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d  989 (1249)
T 3sfz_A          930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE  989 (1249)
T ss_dssp             EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEE
T ss_pred             EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEE
Confidence                                               4578999999999998887665544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.6e-35  Score=257.13  Aligned_cols=258  Identities=15%  Similarity=0.198  Sum_probs=217.5

Q ss_pred             EEeeC-CCc-EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCC
Q psy9936           5 FDLDL-QFG-IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~-~~~-v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~   81 (315)
                      ..+.. ... +.++.+  ++++|++|+.||.|++||+.+++.+..+. |...|.+++|+|++.+++++.|+.|++||+..
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence            34555 444 566666  56799999999999999999999998887 89999999999998444444599999999954


Q ss_pred             -CEEEEee-cCCceEEEEEc--CCCceEEEEcCCCeEEEEEccCCeE-----------------------EEEeccCCCC
Q psy9936          82 -IELHCLK-VLNKVTRMEFL--PYHFLLATASEEGYLSWLDTSIGKI-----------------------VSDFSAKKGK  134 (315)
Q Consensus        82 -~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~-----------------------~~~~~~~~~~  134 (315)
                       ..+..+. |...|.+++|+  +++.++++++.|+.|++||+.++..                       +..+.+|...
T Consensus       193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (464)
T 3v7d_B          193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  272 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred             CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence             4444554 66899999998  5778999999999999999987642                       4566778888


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      +.++  +|+++++++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.|+.|++||++++ +++..+.
T Consensus       273 v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~  349 (464)
T 3v7d_B          273 VRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQ  349 (464)
T ss_dssp             EEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEEC
T ss_pred             EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEe
Confidence            8776  678899999999999999999999999999999999999999999999999999999999999998 8888888


Q ss_pred             cCC-CceeEEEccCCeEEEEcCCEEEecCC---------------CceeecccccccccCCcchhhhhhh
Q psy9936         215 TRT-PINNLAFSQRGLLATSRGNIVEFLKP---------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       215 ~~~-~v~~~~~s~~g~~~~~~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      .|. .|.+++|+++-.+.++.|+.|++|++               ..+.|+|++.++++++ ++.++.+.
T Consensus       350 ~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          350 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            776 69999998654566778999999988               4578999999999888 56555554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.1e-35  Score=252.62  Aligned_cols=261  Identities=13%  Similarity=0.195  Sum_probs=214.7

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEec--------------CCCceeEEEEee-cCcEEEEEe-CC
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMN--------------VMEEVYDIKWLH-LETMFAVAQ-KD   72 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--------------~~~~v~~~~~~~-~~~~l~~~~-~~   72 (315)
                      ..+|++++|+| ++++|++++.||.|++||+.++.....+.              |...|.+++|+| ++.+|++++ |+
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred             CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence            78999999999 99999999999999999998876543332              788999999999 677777776 89


Q ss_pred             eEEEEeCCC-CEEEEeecCCceEEEEEcCCC---ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EE
Q psy9936          73 WVYIYDNQG-IELHCLKVLNKVTRMEFLPYH---FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CI  147 (315)
Q Consensus        73 ~i~i~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l  147 (315)
                      .|++||+.. .....+.+...+.++.|+|.+   .++++++.++.|++||+.+++.+..+..|...|.+++|+|+++ +|
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll  202 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL  202 (408)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred             eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence            999999954 445556777899999999954   4999999999999999999999999999999999999999998 58


Q ss_pred             EEEcCCCeEEEEcCCCCc-ceeEe---------------ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee
Q psy9936         148 CLGHRNGTVTMWSPTVQK-PLASL---------------LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN  211 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~-~~~~~---------------~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~  211 (315)
                      ++++.||.|++||++++. ++..+               ..|...|.+++|+|++++|++++.|+.|++||+.++ ....
T Consensus       203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~  281 (408)
T 4a11_B          203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG-ENTL  281 (408)
T ss_dssp             EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CBCC
T ss_pred             EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC-ccce
Confidence            899999999999998765 33333               568899999999999999999999999999999987 5444


Q ss_pred             EeccCC------C-ceeEEEccCC-eEEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         212 TFRTRT------P-INNLAFSQRG-LLATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       212 ~~~~~~------~-v~~~~~s~~g-~~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      ....+.      . ...+...+.+ .++++.++.|++|+.                .+++|+|++.++++++.++.++.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  361 (408)
T 4a11_B          282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW  361 (408)
T ss_dssp             CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence            333221      1 1222222233 466677999999875                678999999999999999987777


Q ss_pred             hhhH
Q psy9936         268 KIVR  271 (315)
Q Consensus       268 ~~~~  271 (315)
                      ....
T Consensus       362 ~~~~  365 (408)
T 4a11_B          362 VPSL  365 (408)
T ss_dssp             EECC
T ss_pred             eCCC
Confidence            5443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-34  Score=244.40  Aligned_cols=237  Identities=12%  Similarity=0.118  Sum_probs=208.8

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C-----CeEEEE
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K-----DWVYIY   77 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-----~~i~i~   77 (315)
                      ..+.. ...|.+++|+|++++|++++.||.|++||+.+++....+.+...+.+++|+|++.+++++. +     +.|++|
T Consensus        68 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~  147 (369)
T 3zwl_B           68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY  147 (369)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred             hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence            34554 7889999999999999999999999999999999999888999999999999999998876 5     899999


Q ss_pred             eCCCC------------EEEE-eecCC--ceEEEEEcCCCceEEEEcCCCeEEEEEccC-CeEEEEeccCCCCeEEEEEc
Q psy9936          78 DNQGI------------ELHC-LKVLN--KVTRMEFLPYHFLLATASEEGYLSWLDTSI-GKIVSDFSAKKGKLSVMTQN  141 (315)
Q Consensus        78 ~~~~~------------~~~~-~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~  141 (315)
                      |+...            .... ..+..  .+.+++|+|++++|++++.||.|++||+.+ +..+..+..|...|.+++|+
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  227 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS  227 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence            97321            1111 12223  899999999999999999999999999998 78888899999999999999


Q ss_pred             CCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC--------------cEEEEEccCCC
Q psy9936         142 PYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS--------------QLRIWDVRNLE  207 (315)
Q Consensus       142 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--------------~i~iwd~~~~~  207 (315)
                      |++++|++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++++.++              .+++||+.++ 
T Consensus       228 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  305 (369)
T 3zwl_B          228 PDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-  305 (369)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-
T ss_pred             CCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-
Confidence            999999999999999999999999888887 788999999999999999999988              8999999998 


Q ss_pred             CCeeEeccCC-CceeEEEccCCeEE--EEcCCEEEecCC
Q psy9936         208 GPLNTFRTRT-PINNLAFSQRGLLA--TSRGNIVEFLKP  243 (315)
Q Consensus       208 ~~~~~~~~~~-~v~~~~~s~~g~~~--~~~~~~i~~~~~  243 (315)
                      .++..+..|. .|++++|+|++.++  ++.|+.|++|+.
T Consensus       306 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          306 EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            8888888776 69999999999543  345999999984

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=269.23  Aligned_cols=256  Identities=8%  Similarity=0.072  Sum_probs=201.9

Q ss_pred             CCcEEEEEEcCC------CCEEEEEcCCCeEEEEEccCceE-----------EEEec-CCCceeEEEEeecCcEEEEEe-
Q psy9936          10 QFGIYRMNYTKN------GRHLLLGGKRGHVAAFDWVRKTL-----------ACEMN-VMEEVYDIKWLHLETMFAVAQ-   70 (315)
Q Consensus        10 ~~~v~~~~~s~~------~~~l~~~~~dg~i~v~~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~~~~-   70 (315)
                      .+.|.+++|+|+      +.+||+++.||+|++||+.++..           ...+. |...|.+++|++++ .|++|+ 
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~  285 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFK  285 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEET
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeC
Confidence            578999999997      57999999999999999976532           12344 77899999999876 455554 


Q ss_pred             CCeEEEEeCCCC--EEE-EeecCCceEEE--EEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCC--CeEEEEEcC
Q psy9936          71 KDWVYIYDNQGI--ELH-CLKVLNKVTRM--EFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKG--KLSVMTQNP  142 (315)
Q Consensus        71 ~~~i~i~~~~~~--~~~-~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~p  142 (315)
                      ||+|++||+...  ... ...|...|.++  .|+|++ .+|++++.|++|++||+++++....+.+|..  .+.+++|+|
T Consensus       286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            899999999632  223 33567899999  578887 8999999999999999998876666665543  478899999


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc----CC-
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT----RT-  217 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~-  217 (315)
                      +++.+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.|++|++||+...  .+.....    +. 
T Consensus       366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~  443 (524)
T 2j04_B          366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKS  443 (524)
T ss_dssp             TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCC
T ss_pred             CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceee
Confidence            9999999999999999999999988889999999999999999999999999999999998653  3332221    11 


Q ss_pred             -CceeEEEccCCeEEEEcC-CEEEecC---------------CCceeeccccc---ccccCCcchhhhhhh
Q psy9936         218 -PINNLAFSQRGLLATSRG-NIVEFLK---------------PPEINFEPRRK---ANKAGGSVQRAKVKK  268 (315)
Q Consensus       218 -~v~~~~~s~~g~~~~~~~-~~i~~~~---------------~~~~~~~~~~~---~~~~~~~~~~~~~~~  268 (315)
                       .+.+++|+|+|..+...+ -.+..|.               +.+++|+|++.   .+++|+.++.++.+.
T Consensus       444 ~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          444 LRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             CEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             eEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence             367999999996443333 1121121               17899999964   899999888777665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.3e-36  Score=295.75  Aligned_cols=257  Identities=15%  Similarity=0.207  Sum_probs=228.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC-   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~-   86 (315)
                      ...+.+++|+|+++++++|+.+|.|++|++.+++....+. |...|.+++|+|++++|++++ |+.|++||+.+..... 
T Consensus       961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A          961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred             cCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence            5679999999999999999999999999999998887776 888999999999999998886 8999999996554433 


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                      ..+...+.++.|+|++ .+++++.|+.|++||+.+++....+.+|.+.|.+++|+|+++++++++.|+.|++||+.++++
T Consensus      1041 ~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~ 1119 (1249)
T 3sfz_A         1041 QAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119 (1249)
T ss_dssp             BCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC
T ss_pred             ecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce
Confidence            4566899999999976 577889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEe---------ccC-CCceeEEEccCCeEEEEcCC
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF---------RTR-TPINNLAFSQRGLLATSRGN  236 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~-~~v~~~~~s~~g~~~~~~~~  236 (315)
                      +..+.+|...|++++|+|+|++|++++.||.|++||+.++ .++..+         ..| ..|++++|+|||.+++++++
T Consensus      1120 ~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g 1198 (1249)
T 3sfz_A         1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG-QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1198 (1249)
T ss_dssp             SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS-CCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESS
T ss_pred             eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccccccccccccCceEEEEEECCCCCEEEECCC
Confidence            9999999999999999999999999999999999999988 666554         233 36999999999987777789


Q ss_pred             EEEecCC----------------CceeecccccccccCCcchhhhhhh
Q psy9936         237 IVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       237 ~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      .|++|++                .+++|+|+++.+++++.++.+..++
T Consensus      1199 ~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A         1199 YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp             SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred             eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEe
Confidence            9999986                6789999999999999887665543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-36  Score=265.81  Aligned_cols=237  Identities=13%  Similarity=0.116  Sum_probs=190.3

Q ss_pred             EEeeCCCcEEEEEEcCCC---------CEEEE-------------------EcCCCeEEEEEccCceEE----EEec-CC
Q psy9936           5 FDLDLQFGIYRMNYTKNG---------RHLLL-------------------GGKRGHVAAFDWVRKTLA----CEMN-VM   51 (315)
Q Consensus         5 ~~~~~~~~v~~~~~s~~~---------~~l~~-------------------~~~dg~i~v~~~~~~~~~----~~~~-~~   51 (315)
                      +.+...+.|.+|+|+|++         ++||+                   ++.|++|+||++.+++..    ..+. |.
T Consensus       128 ~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~  207 (524)
T 2j04_B          128 FIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF  207 (524)
T ss_dssp             EEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC
T ss_pred             EEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC
Confidence            344457788889998876         56666                   457789999999877642    2344 56


Q ss_pred             CceeEEEEeec------CcEEEEEe-CCeEEEEeCCCCE-------------EEEeecCCceEEEEEcCCCceEEEEcCC
Q psy9936          52 EEVYDIKWLHL------ETMFAVAQ-KDWVYIYDNQGIE-------------LHCLKVLNKVTRMEFLPYHFLLATASEE  111 (315)
Q Consensus        52 ~~v~~~~~~~~------~~~l~~~~-~~~i~i~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d  111 (315)
                      +.|.+++|+|+      +.+||+++ |++|++||+....             .....|...|.+++|+|++ .|++|+.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence            88999999996      56888776 8999999995321             1122356889999999865 89999999


Q ss_pred             CeEEEEEccCC-eEEEEeccCCCCeEEE--EEcCCC-CEEEEEcCCCeEEEEcCCCCcceeEeecccc--cEEEEEECCC
Q psy9936         112 GYLSWLDTSIG-KIVSDFSAKKGKLSVM--TQNPYN-ACICLGHRNGTVTMWSPTVQKPLASLLCHKA--GIQSVAVNHT  185 (315)
Q Consensus       112 ~~i~~~d~~~~-~~~~~~~~~~~~v~~~--~~~p~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~sp~  185 (315)
                      |+|++||++++ .+...+.+|...|.++  +|+|+| .+|++|+.|++|+|||+++++++..+.+|..  .|.+++|+|+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence            99999999876 3455688899999999  578888 8999999999999999999888877777753  5789999999


Q ss_pred             CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe--EEEEcCCEEEecCC
Q psy9936         186 GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       186 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                      +..+++++.|++|++||++++ .++..+..|. +|++++|+|+|.  +.++.|++|++|++
T Consensus       367 ~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          367 IYSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             TTEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             cCeEEEeCCCCcEEEEECccc-ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            999999999999999999998 7777777776 699999999994  45567999999976

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2e-34  Score=248.84  Aligned_cols=230  Identities=17%  Similarity=0.168  Sum_probs=193.1

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEE
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~   84 (315)
                      ...|.+++|+| ++.+|++++.|+.|++||+.+........   +...|.+++|+|++.+|++++ |+.|++||+++..+
T Consensus       118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  197 (383)
T 3ei3_B          118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEI  197 (383)
T ss_dssp             TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEE
T ss_pred             CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEE
Confidence            78999999999 78999999999999999998755443333   337799999999999999887 89999999987777


Q ss_pred             EEee-cCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccC----CeEEEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeEE
Q psy9936          85 HCLK-VLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSI----GKIVSDFSAKKGKLSVMTQNP-YNACICLGHRNGTVT  157 (315)
Q Consensus        85 ~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~  157 (315)
                      ..+. |...|.+++|+|++. +|++++.|+.|++||+++    +..+..+ .|...|.+++|+| ++++|++++.|+.|+
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            6665 568999999999998 999999999999999997    5666666 6899999999999 999999999999999


Q ss_pred             EEcCCCCcceeEeeccc-----------------ccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--CC
Q psy9936         158 MWSPTVQKPLASLLCHK-----------------AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--TP  218 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~-----------------~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~  218 (315)
                      +||+++++.+..+.+|.                 ..+..++|+|+|++  +++.|+.|++||+.++ +++..+..+  ..
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-~~~~~l~~~~~~~  353 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-GLVHQLRDPNAAG  353 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC-CEEEEECBTTBCS
T ss_pred             EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC-ceeeeecCCCCCc
Confidence            99999988877776553                 23444666666666  7779999999999998 888888763  34


Q ss_pred             -ceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         219 -INNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       219 -v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                       +..++|+|+|. +++++|+.|++|++
T Consensus       354 ~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          354 IISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             CCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             eEEEEEEecCccEEEEecCCcEEEEec
Confidence             56679999995 44556999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-36  Score=264.59  Aligned_cols=237  Identities=12%  Similarity=0.080  Sum_probs=198.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeec
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKV   89 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~   89 (315)
                      ..+|.+++|||||+++|+++.|++|+  |...++.+  -.|...|++++|+|+|      .++.+.+|+.++.....+.+
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~~~~~~   84 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE------FENKLDFELAQQNGLLNSQP   84 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC------CCCTTTTSCCCSSCSSTTSC
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC------CcceEEEEeCCCceEeecCC
Confidence            78899999999999999999999999  76555443  2488899999999999      56777777766555444456


Q ss_pred             CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCC-----CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936          90 LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG-----KLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        90 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      ...|.+++|+|+|.+||+++.||.|++||...  .+..+. |..     .+.+++|||||++|++|+.||+|++||+.++
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            78899999999999999999999999999543  666677 665     4999999999999999999999999999987


Q ss_pred             cc-------eeEe----ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCC---eeEec-cCC-CceeEEEccCC
Q psy9936         165 KP-------LASL----LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP---LNTFR-TRT-PINNLAFSQRG  228 (315)
Q Consensus       165 ~~-------~~~~----~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~---~~~~~-~~~-~v~~~~~s~~g  228 (315)
                      ..       +.++    .+|..+|.+++|+|+|  +++++.|++|++||+.+. ..   ...+. .|. .|.+++|+ +.
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~-~~~~~~~tL~~~h~~~V~svaFs-g~  237 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS-SHQPVSRMIQNASRRKITDLKIV-DY  237 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS-SSCCCEEEEECCCSSCCCCEEEE-TT
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC-ccccceeeecccccCcEEEEEEE-CC
Confidence            53       5666    5677899999999999  888999999999999887 43   34553 553 69999999 55


Q ss_pred             eEEEEcCCEEEecCC----------------Cceee--cccccccccCCcchh
Q psy9936         229 LLATSRGNIVEFLKP----------------PEINF--EPRRKANKAGGSVQR  263 (315)
Q Consensus       229 ~~~~~~~~~i~~~~~----------------~~~~~--~~~~~~~~~~~~~~~  263 (315)
                      .++++++++|++|++                ..++|  +|++..++.++.++.
T Consensus       238 ~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          238 KVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             EEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             EEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            677778999999987                56788  999999999987766

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-34  Score=252.25  Aligned_cols=233  Identities=12%  Similarity=0.207  Sum_probs=198.7

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCc-------eEEEEec-CCCceeEEEEeecC-cEEEEEe-CCeEEEEe
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRK-------TLACEMN-VMEEVYDIKWLHLE-TMFAVAQ-KDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~-~~~i~i~~   78 (315)
                      ..+|++++|+| ++.+|++++.||.|++|++.++       +....+. |...|.+++|+|++ .+|++++ |+.|++||
T Consensus        81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence            67899999999 9999999999999999999887       4455555 88999999999997 5777766 89999999


Q ss_pred             CCC-CEEEEe---ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe-ccCCCC-eEEEEEcCCCCEEEEE--
Q psy9936          79 NQG-IELHCL---KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF-SAKKGK-LSVMTQNPYNACICLG--  150 (315)
Q Consensus        79 ~~~-~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~-v~~~~~~p~~~~l~~~--  150 (315)
                      +.. ..+..+   .|...|.+++|+|++.+|++++.|+.|++||+++++.+..+ ..|.+. +..+.|+|++.+|++|  
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  240 (402)
T 2aq5_A          161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS  240 (402)
T ss_dssp             TTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred             CCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence            954 444445   26689999999999999999999999999999999999888 678765 8999999999999999  


Q ss_pred             -cCCCeEEEEcCCCCcc-eeEee-cccccEEEEEECCCCCEEEE-eeCCCcEEEEEccCCCCC-eeEecc---CCCceeE
Q psy9936         151 -HRNGTVTMWSPTVQKP-LASLL-CHKAGIQSVAVNHTGTYMAT-SAGDSQLRIWDVRNLEGP-LNTFRT---RTPINNL  222 (315)
Q Consensus       151 -~~d~~i~i~d~~~~~~-~~~~~-~~~~~i~~~~~sp~g~~l~~-~~~d~~i~iwd~~~~~~~-~~~~~~---~~~v~~~  222 (315)
                       +.|+.|++||+++++. +.... .|...+.+++|+|++.+|++ |+.|+.|++||+.++ .+ +..+..   ..++.++
T Consensus       241 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~-~~~~~~l~~~~~~~~v~~~  319 (402)
T 2aq5_A          241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE-APFLHYLSMFSSKESQRGM  319 (402)
T ss_dssp             TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS-TTCEEEEEEECCSSCCSEE
T ss_pred             CCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC-CcceEeecccccCCcccce
Confidence             7999999999998754 33333 47788999999999999875 557999999999987 53 444433   3579999


Q ss_pred             EEccCCeEEEEcCCEEEecCC
Q psy9936         223 AFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       223 ~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +|+|++.++++.++.+++|+.
T Consensus       320 ~~sp~~~~~~s~~~~~~~~~l  340 (402)
T 2aq5_A          320 GYMPKRGLEVNKCEIARFYKL  340 (402)
T ss_dssp             EECCGGGSCGGGTEEEEEEEE
T ss_pred             EEecccccceecceeEEEEEc
Confidence            999999988889999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-35  Score=253.46  Aligned_cols=237  Identities=16%  Similarity=0.213  Sum_probs=208.3

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCc---------------eeEEEEeecCcEEE
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEE---------------VYDIKWLHLETMFA   67 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~---------------v~~~~~~~~~~~l~   67 (315)
                      ..+.. ...|.+++|+|++++|++++.||.|++||+.+++....+. +...               +.++.|+|++.+++
T Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (425)
T 1r5m_A          143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVI  222 (425)
T ss_dssp             EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEE
T ss_pred             eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEE
Confidence            34444 7889999999999999999999999999999999888877 4444               89999999988777


Q ss_pred             EEeCCeEEEEeCCC-CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC
Q psy9936          68 VAQKDWVYIYDNQG-IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        68 ~~~~~~i~i~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~  145 (315)
                      ++.++.|++||+.. ..+..+ .|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+..|...+.+++|+|++ 
T Consensus       223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-  301 (425)
T 1r5m_A          223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-  301 (425)
T ss_dssp             ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred             EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence            77799999999954 333333 466899999999999999999999999999999999888898899999999999999 


Q ss_pred             EEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC-----------------
Q psy9936         146 CICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG-----------------  208 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~-----------------  208 (315)
                      ++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+.+. .                 
T Consensus       302 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~~~~~  380 (425)
T 1r5m_A          302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL-NSKSRSLYGNRDGILNPL  380 (425)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH-HC--------------CE
T ss_pred             EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC-ccceeeeecccccccCcc
Confidence            9999999999999999999999999999999999999999999999999999999999987 5                 


Q ss_pred             ---CeeEeccC--C-CceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         209 ---PLNTFRTR--T-PINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       209 ---~~~~~~~~--~-~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                         ++..+..|  . +|++++|+|++.+  +++.|+.|++|+.
T Consensus       381 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             cchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence               67778777  5 7999999999953  4556899999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-34  Score=270.56  Aligned_cols=257  Identities=12%  Similarity=0.144  Sum_probs=225.9

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      ..+.. ..+|.+++|+|++++|++++.||.|++||+.+++....+. |...|.+++|+|++.+|++++ |+.|++|++.+
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~  128 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN  128 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence            34555 7889999999999999999999999999999999888887 889999999999999888876 79999999954


Q ss_pred             C-E-EEEe-ecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEeccCC-CCeEEEEEcC--CCCEEEEEcCCC
Q psy9936          82 I-E-LHCL-KVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-GKLSVMTQNP--YNACICLGHRNG  154 (315)
Q Consensus        82 ~-~-~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~p--~~~~l~~~~~d~  154 (315)
                      . . ...+ .|...|.+++|+| ++..|++++.||.|++||+.++.....+..+. ..+..++|+|  ++.+|++++.||
T Consensus       129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  208 (814)
T 3mkq_A          129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (814)
T ss_dssp             TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred             CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence            3 3 3333 3668899999999 78999999999999999998887777766554 7899999999  999999999999


Q ss_pred             eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe---E
Q psy9936         155 TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL---L  230 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~---~  230 (315)
                      .|++||+++++++..+.+|...|.+++|+|++.+|++++.||.|++||+.++ ..+..+..+. .+.+++|+|+|.   +
T Consensus       209 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~  287 (814)
T 3mkq_A          209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYI  287 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECTTCGGGEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEccCCCceEE
Confidence            9999999999999999999999999999999999999999999999999998 8888887765 699999999983   6


Q ss_pred             EEEcCCEEEecCC----CceeecccccccccCCcch
Q psy9936         231 ATSRGNIVEFLKP----PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       231 ~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~  262 (315)
                      +++.++.+..|+.    ..+.++|+++.++.++...
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  323 (814)
T 3mkq_A          288 ASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA  323 (814)
T ss_dssp             EEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred             EEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence            6677888888876    6788999999998776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-34  Score=246.82  Aligned_cols=230  Identities=13%  Similarity=0.202  Sum_probs=197.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC--CCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ--GIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~--~~~~~   85 (315)
                      ...|.+++|+|++++|++++.||.|++||+.+++....+. |...|.+++|  ++.+|++++ |+.|++||+.  .....
T Consensus       134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~  211 (401)
T 4aez_A          134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG  211 (401)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee
Confidence            6789999999999999999999999999999999888886 8889999999  456777665 8999999995  33344


Q ss_pred             Ee-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEc--CCCeEEEEcC
Q psy9936          86 CL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGH--RNGTVTMWSP  161 (315)
Q Consensus        86 ~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~--~d~~i~i~d~  161 (315)
                      .+ .|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+..|...|.+++|+|++. ++++++  .|+.|++||+
T Consensus       212 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~  291 (401)
T 4aez_A          212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA  291 (401)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence            44 4668999999999999999999999999999999999999999999999999999775 666654  7999999999


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEe--eCCCcEEEEEccCCCCCeeE--eccCC-CceeEEEccCCeE--EEEc
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATS--AGDSQLRIWDVRNLEGPLNT--FRTRT-PINNLAFSQRGLL--ATSR  234 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~--~~d~~i~iwd~~~~~~~~~~--~~~~~-~v~~~~~s~~g~~--~~~~  234 (315)
                      ++++++..+. +...|.+++|+|++.+|+++  +.||.|++||+.++ .....  +..|. .|.+++|+|+|.+  .++.
T Consensus       292 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          292 ATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             CCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            9999888886 67889999999999999994  48999999999986 44443  44554 6999999999953  3446


Q ss_pred             CCEEEecCC
Q psy9936         235 GNIVEFLKP  243 (315)
Q Consensus       235 ~~~i~~~~~  243 (315)
                      |+.|++|+.
T Consensus       370 dg~i~iw~~  378 (401)
T 4aez_A          370 DENLKFWRV  378 (401)
T ss_dssp             TSEEEEEEC
T ss_pred             CCcEEEEEC
Confidence            899999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=246.33  Aligned_cols=232  Identities=16%  Similarity=0.194  Sum_probs=189.8

Q ss_pred             CCcEEEEEEcCC---CCEEEEEcCCCeEEEEEccC-ceEE-EEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKN---GRHLLLGGKRGHVAAFDWVR-KTLA-CEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~---~~~l~~~~~dg~i~v~~~~~-~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~   82 (315)
                      ...|++++|+|+   |++|++++.||.|++||+.+ +... ..+. |...|.+++|+|++++|++++ |+.|++||+...
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  118 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN  118 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence            789999999999   69999999999999999986 5444 4444 889999999999999988886 899999999654


Q ss_pred             E-EEEeecCCceEEEEE--cCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC---------------------------
Q psy9936          83 E-LHCLKVLNKVTRMEF--LPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK---------------------------  132 (315)
Q Consensus        83 ~-~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------------------  132 (315)
                      . +....|...|.+++|  +|++.+|++++.||.|++||+++++.+..+..+.                           
T Consensus       119 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  198 (368)
T 3mmy_A          119 QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLE  198 (368)
T ss_dssp             EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred             CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence            4 444567799999999  8999999999999999999999887666554332                           


Q ss_pred             --------------CCeEEEEEcCCCCE----EEEEcCCCeEEEEcCCCC---cceeEeecccc------------cEEE
Q psy9936         133 --------------GKLSVMTQNPYNAC----ICLGHRNGTVTMWSPTVQ---KPLASLLCHKA------------GIQS  179 (315)
Q Consensus       133 --------------~~v~~~~~~p~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~------------~i~~  179 (315)
                                    ..+.++++.+++..    +++++.|+.|++||++..   ..+..+.+|..            +|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (368)
T 3mmy_A          199 NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG  278 (368)
T ss_dssp             SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE
T ss_pred             cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEE
Confidence                          22344444444433    999999999999999987   56777777776            7999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeE--EEEcCCEEEecC
Q psy9936         180 VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLL--ATSRGNIVEFLK  242 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~--~~~~~~~i~~~~  242 (315)
                      ++|+|++++|++++.||.|++||+.++ .++..+..|. +|++++|+|+|.+  +++.|+..+.|.
T Consensus       279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          279 IAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             EEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence            999999999999999999999999998 8888888765 6999999999953  334455444443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-33  Score=250.17  Aligned_cols=233  Identities=12%  Similarity=0.151  Sum_probs=201.8

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEee--cCcEEEEEe-CCeEEEEeC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLH--LETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~-~~~i~i~~~   79 (315)
                      ..+.. ..+|.+++|+|++ +|++|+.||.|++||+.+++....+. |...|.+++|++  ++.++++++ |+.|++||+
T Consensus       156 ~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~  234 (464)
T 3v7d_B          156 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL  234 (464)
T ss_dssp             EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEEC
T ss_pred             EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeC
Confidence            34555 7899999999988 99999999999999999999988887 889999999995  677888776 899999998


Q ss_pred             CCCE------------------------EEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC
Q psy9936          80 QGIE------------------------LHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK  134 (315)
Q Consensus        80 ~~~~------------------------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  134 (315)
                      ....                        ... ..|...+.++  ++++.++++++.|+.|++||+.+++.+..+.+|...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  312 (464)
T 3v7d_B          235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR  312 (464)
T ss_dssp             CCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence            5432                        112 2344566665  677899999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      |.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|.+++|+  +.+|++++.||.|++||+.++ .......
T Consensus       313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~-~~~~~~~  389 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY-SRKFSYH  389 (464)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC-CEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC-ceeeeec
Confidence            9999999999999999999999999999999999999999999999997  579999999999999999987 6666555


Q ss_pred             cCCCceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         215 TRTPINNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       215 ~~~~v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      ....+..++|+|++. +++++++.|++|+.
T Consensus       390 ~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~  419 (464)
T 3v7d_B          390 HTNLSAITTFYVSDNILVSGSENQFNIYNL  419 (464)
T ss_dssp             CTTCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred             CCCCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence            555688899999995 55556999999987

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.6e-34  Score=251.24  Aligned_cols=249  Identities=15%  Similarity=0.174  Sum_probs=205.5

Q ss_pred             cEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceE----EEEec-CCCceeEEEEee-cCcEEEEEe-CCeEEEEeCCCC-
Q psy9936          12 GIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTL----ACEMN-VMEEVYDIKWLH-LETMFAVAQ-KDWVYIYDNQGI-   82 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~----~~~~~-~~~~v~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~-   82 (315)
                      ....++++|+...++ +++.+|.|+||++.....    ...+. |...|.+++|+| ++.+|++++ |+.|++|++... 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            345678888776444 578899999999865432    22333 888999999999 899998887 899999998542 


Q ss_pred             -------EEEEe-ecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEc
Q psy9936          83 -------ELHCL-KVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDF--SAKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        83 -------~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                             .+..+ .|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+  ..|...|.+++|+|++++|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                   33333 467899999999998 69999999999999999999999998  78999999999999999999999


Q ss_pred             CCCeEEEEcCCCCcceeEe-eccccc-EEEEEECCCCCEEEEe---eCCCcEEEEEccCCCCCeeEec--cCCCceeEEE
Q psy9936         152 RNGTVTMWSPTVQKPLASL-LCHKAG-IQSVAVNHTGTYMATS---AGDSQLRIWDVRNLEGPLNTFR--TRTPINNLAF  224 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~sp~g~~l~~~---~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~  224 (315)
                      .|+.|++||+++++.+..+ .+|.+. +.++.|+|++.+|++|   +.|+.|++||+++...++....  .+..+.+++|
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence            9999999999999998888 678775 8999999999999999   7999999999998734344443  3457999999


Q ss_pred             ccCCe-E-EEE-cCCEEEecCC-------------------CceeecccccccccCCc
Q psy9936         225 SQRGL-L-ATS-RGNIVEFLKP-------------------PEINFEPRRKANKAGGS  260 (315)
Q Consensus       225 s~~g~-~-~~~-~~~~i~~~~~-------------------~~~~~~~~~~~~~~~~~  260 (315)
                      +|++. + +++ .|+.|++|+.                   .+++|+|++..+++++.
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~  333 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE  333 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred             cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence            99994 3 344 4899998865                   57889999999887544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.9e-34  Score=251.85  Aligned_cols=235  Identities=18%  Similarity=0.264  Sum_probs=198.0

Q ss_pred             CCcEEEEEEcCC-CCEEEEEcCCCeEEEEEccC----------ceEEEEec-CCCceeEEEEeecCc-EEEEEe-CCeEE
Q psy9936          10 QFGIYRMNYTKN-GRHLLLGGKRGHVAAFDWVR----------KTLACEMN-VMEEVYDIKWLHLET-MFAVAQ-KDWVY   75 (315)
Q Consensus        10 ~~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~-~~~i~   75 (315)
                      .+.|++++|+|+ +.+|++++.+|.|++|++.+          ......+. |...+.+++|+|++. +|++++ ||.|+
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence            789999999997 67999999999999999986          45555555 888999999999987 777776 89999


Q ss_pred             EEeCCCC-----E----EEEeecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCC---eEEEEeccCCCCeEEEEEcC
Q psy9936          76 IYDNQGI-----E----LHCLKVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIG---KIVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        76 i~~~~~~-----~----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~p  142 (315)
                      +|++...     .    .....|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|++++|+|
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p  287 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP  287 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS
T ss_pred             EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC
Confidence            9999541     1    12234668899999999 6789999999999999999977   56777888999999999999


Q ss_pred             CCC-EEEEEcCCCeEEEEcCCC-CcceeEeecccccEEEEEECCCCC-EEEEeeCCCcEEEEEccCCC------------
Q psy9936         143 YNA-CICLGHRNGTVTMWSPTV-QKPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNLE------------  207 (315)
Q Consensus       143 ~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~~------------  207 (315)
                      ++. +|++|+.||.|++||+++ ..++..+..|...|++++|+|++. +|++++.|+.|++||+....            
T Consensus       288 ~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  367 (430)
T 2xyi_A          288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  367 (430)
T ss_dssp             SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence            987 688999999999999998 567888999999999999999985 79999999999999998731            


Q ss_pred             -CCeeEeccCC-CceeEEEccCCe-EE--EEcCCEEEecCCC
Q psy9936         208 -GPLNTFRTRT-PINNLAFSQRGL-LA--TSRGNIVEFLKPP  244 (315)
Q Consensus       208 -~~~~~~~~~~-~v~~~~~s~~g~-~~--~~~~~~i~~~~~~  244 (315)
                       .++..+..|. .|++++|+|++. ++  ++.|+.|++|++.
T Consensus       368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence             3445555555 599999999984 43  4458999999863

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.7e-34  Score=244.55  Aligned_cols=239  Identities=11%  Similarity=0.132  Sum_probs=199.2

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE---ecCCCceeEEEEeecCcEEEEEe-CCeEEEEe
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE---MNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYD   78 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~   78 (315)
                      ...+.. ...|.+++|+|++++|++++.||.|++||+.+++....   ..|...|.+++|+|++++|++++ ++.|++||
T Consensus        45 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d  124 (372)
T 1k8k_C           45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY  124 (372)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred             eeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence            445555 78999999999999999999999999999998875444   33788999999999999998887 89999999


Q ss_pred             CCCCE----EEEe--ecCCceEEEEEcCCCceEEEEcCCCeEEEEEc------------------cCCeEEEEeccCCCC
Q psy9936          79 NQGIE----LHCL--KVLNKVTRMEFLPYHFLLATASEEGYLSWLDT------------------SIGKIVSDFSAKKGK  134 (315)
Q Consensus        79 ~~~~~----~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~------------------~~~~~~~~~~~~~~~  134 (315)
                      +....    ...+  .|...|.+++|+|++.+|++++.||.|++||+                  ..++.+..+..|...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (372)
T 1k8k_C          125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  204 (372)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence            84332    2222  34688999999999999999999999999995                  467888889899999


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC--CC-----
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN--LE-----  207 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~--~~-----  207 (315)
                      +.+++|+|++++|++++.|+.|++||+++++++..+..|..+|.+++|+|++.+|++| .|+.|++|++.+  +.     
T Consensus       205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~  283 (372)
T 1k8k_C          205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGG  283 (372)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEee
Confidence            9999999999999999999999999999999999999999999999999999988887 999999999987  20     


Q ss_pred             --------------------------CCe------eEe-ccCC-CceeEEEc-cCC---eE--EEEcCCEEEecCC
Q psy9936         208 --------------------------GPL------NTF-RTRT-PINNLAFS-QRG---LL--ATSRGNIVEFLKP  243 (315)
Q Consensus       208 --------------------------~~~------~~~-~~~~-~v~~~~~s-~~g---~~--~~~~~~~i~~~~~  243 (315)
                                                ...      ..+ ..|. +|++++|. ++|   .+  .++.|+.|++|+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             CCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             ccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                                      000      222 2444 69999976 564   33  3445999999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-34  Score=251.41  Aligned_cols=256  Identities=15%  Similarity=0.261  Sum_probs=214.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~   84 (315)
                      +..+..|+||++ +.||+|. |++|+|||..+++....+.   |...|++++|+|+|++|++|+ |+.|++||+.. ..+
T Consensus       105 d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          105 DYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence            345677999986 4788775 8999999999999877664   567899999999999999887 89999999954 444


Q ss_pred             EEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          85 HCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        85 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      ..+ .|...+.+++++  +.+|++|+.|+.+.+||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++||..
T Consensus       183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            444 355778887765  678999999999999998764 5667788999999999999999999999999999999998


Q ss_pred             CCc----ceeEeecccccEEEEEECCCCC-EEEE--eeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEE
Q psy9936         163 VQK----PLASLLCHKAGIQSVAVNHTGT-YMAT--SAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATS  233 (315)
Q Consensus       163 ~~~----~~~~~~~~~~~i~~~~~sp~g~-~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~  233 (315)
                      +++    .+.....|...|.+++|+|++. ++++  |+.|++|++||+.++ .++..+..+..+.++.|+|++.  ++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeeccccceeeeeecCCCCeEEEEE
Confidence            764    3556678999999999999755 5554  457999999999999 8888888888999999999984  3333


Q ss_pred             --cCCEEEecCC----------------CceeecccccccccCCcchhhhhhhhh
Q psy9936         234 --RGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKIV  270 (315)
Q Consensus       234 --~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (315)
                        .|+.|++|+.                ++++|+|+++++++++.|+.++.+...
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence              4789999976                678999999999999999999988754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-35  Score=252.25  Aligned_cols=193  Identities=11%  Similarity=0.182  Sum_probs=160.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce---EEEEe-cCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT---LACEM-NVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE-   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~-   83 (315)
                      ...|.+++|+|++++|++++.||.|++||+.+++   ....+ .|...|.+++|+|++++|++++ |+.|++||+.... 
T Consensus        55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND  134 (377)
T ss_dssp             SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred             CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence            6789999999999999999999999999999877   34444 4889999999999999888876 8999999996543 


Q ss_pred             ---EEEee--cCCceEEEEEcCCCceEEEEcCCCeEEEEEcc------------------CCeEEEEeccCCCCeEEEEE
Q psy9936          84 ---LHCLK--VLNKVTRMEFLPYHFLLATASEEGYLSWLDTS------------------IGKIVSDFSAKKGKLSVMTQ  140 (315)
Q Consensus        84 ---~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~v~~~~~  140 (315)
                         ...+.  |...|.+++|+|++.+|++++.|+.|++||+.                  .++.+..+ .|...|.+++|
T Consensus       135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  213 (377)
T 3dwl_C          135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF  213 (377)
T ss_dssp             CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred             ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence               34443  67899999999999999999999999999985                  34566666 89999999999


Q ss_pred             cCCCCEEEEEcCCCeEEEEcCCCCcc----eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         141 NPYNACICLGHRNGTVTMWSPTVQKP----LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       141 ~p~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      +|++++|++++.|+.|++||+++++.    +..+.+|..+|.+++|+|+|++|++++.++.+ +|+..
T Consensus       214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            99999999999999999999999987    78888999999999999999999998877655 67664

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-35  Score=248.98  Aligned_cols=242  Identities=9%  Similarity=0.025  Sum_probs=191.4

Q ss_pred             EEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC---------E-EEE
Q psy9936          17 NYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI---------E-LHC   86 (315)
Q Consensus        17 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~---------~-~~~   86 (315)
                      .+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+  ++.++.|+.|++|+..+.         . +..
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            345678899999999999999999998877776 456788888888  444445899999976532         2 222


Q ss_pred             e--ecCCceEEEEEcC--CCceEEEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          87 L--KVLNKVTRMEFLP--YHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        87 ~--~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .  .|...|.+++|+|  ++.++++++.||.|++||+++++...... .+...+.+++|+|+|.+|++|+.|+.|++||+
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            2  3447899999999  99999999999999999999998876654 34557999999999999999999999999999


Q ss_pred             CCCcce-eEeec-ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc---CC-Cce--eEEEccCCeEEEE
Q psy9936         162 TVQKPL-ASLLC-HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT---RT-PIN--NLAFSQRGLLATS  233 (315)
Q Consensus       162 ~~~~~~-~~~~~-~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~-~v~--~~~~s~~g~~~~~  233 (315)
                      ++++.+ ..+.. |..+|++++|+|+|.+|++++ |+.|++||+++. .++..+..   +. ++.  +++|+|+|.++++
T Consensus       200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred             CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEECCCCCEEEE
Confidence            999887 78887 999999999999999999999 459999999988 66555443   22 343  5999999976555


Q ss_pred             --c-CCEEEecCC------------Cceeecc---cccccccCCcchh
Q psy9936         234 --R-GNIVEFLKP------------PEINFEP---RRKANKAGGSVQR  263 (315)
Q Consensus       234 --~-~~~i~~~~~------------~~~~~~~---~~~~~~~~~~~~~  263 (315)
                        + ++.+++|+.            ..+.|.|   +...++.++.++.
T Consensus       278 ~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  325 (343)
T 3lrv_A          278 YSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGG  325 (343)
T ss_dssp             EETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTE
T ss_pred             ecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCc
Confidence              6 999999955            1466777   6677776666654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.6e-34  Score=237.88  Aligned_cols=219  Identities=13%  Similarity=0.147  Sum_probs=184.4

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC---CEEEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCC
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG---IELHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIG  122 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~---~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~  122 (315)
                      |.+.|.+++|+|+|++|++++ |+.|++|++.+   ..+..+ .|..+|.+++|+|+  +.+|++++.|++|++||+.++
T Consensus         8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~   87 (297)
T 2pm7_B            8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG   87 (297)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred             CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence            888999999999999999887 89999999853   233344 46789999999864  889999999999999999877


Q ss_pred             e--EEEEeccCCCCeEEEEEcCC--CCEEEEEcCCCeEEEEcCCCCc--ceeEeecccccEEEEEECCC-----------
Q psy9936         123 K--IVSDFSAKKGKLSVMTQNPY--NACICLGHRNGTVTMWSPTVQK--PLASLLCHKAGIQSVAVNHT-----------  185 (315)
Q Consensus       123 ~--~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~sp~-----------  185 (315)
                      +  .+..+..|...|.+++|+|+  |.+|++++.|+.|++||++++.  ....+.+|...|.+++|+|+           
T Consensus        88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~  167 (297)
T 2pm7_B           88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT  167 (297)
T ss_dssp             CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred             ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence            4  55667789999999999998  8899999999999999998763  24567789999999999997           


Q ss_pred             --CCEEEEeeCCCcEEEEEccCCCC----CeeEeccCC-CceeEEEccCC---eEE--EEcCCEEEecCC----------
Q psy9936         186 --GTYMATSAGDSQLRIWDVRNLEG----PLNTFRTRT-PINNLAFSQRG---LLA--TSRGNIVEFLKP----------  243 (315)
Q Consensus       186 --g~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~-~v~~~~~s~~g---~~~--~~~~~~i~~~~~----------  243 (315)
                        +++|++|+.|++|++||++++ .    +...+..|. .|.+++|+|++   .++  ++.|++|++|++          
T Consensus       168 ~~~~~l~sgs~D~~v~lwd~~~~-~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~  246 (297)
T 2pm7_B          168 KESRKFVTGGADNLVKIWKYNSD-AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT  246 (297)
T ss_dssp             --CCEEEEEETTSCEEEEEEETT-TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE
T ss_pred             CCcceEEEEcCCCcEEEEEEcCC-CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee
Confidence              579999999999999999886 4    445666776 69999999984   433  446999999964          


Q ss_pred             -----------CceeecccccccccCCcchhhhhhhh
Q psy9936         244 -----------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       244 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                                 .+++|+|+++++++++.++.++.+..
T Consensus       247 ~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          247 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence                       24689999999999999998877653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8e-33  Score=241.96  Aligned_cols=237  Identities=14%  Similarity=0.250  Sum_probs=199.2

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      +.+.. ...|++++|+|+|++||+|+.||.|+|||+.+++.+..+. |...+.++.|  ++.+|++++ |+.+++||...
T Consensus       141 ~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          141 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred             EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecc
Confidence            34444 5679999999999999999999999999999999988887 7888887766  567888776 89999999843


Q ss_pred             --CEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe----EEEEeccCCCCeEEEEEcCCCC-EEEE--Ec
Q psy9936          82 --IELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK----IVSDFSAKKGKLSVMTQNPYNA-CICL--GH  151 (315)
Q Consensus        82 --~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~p~~~-~l~~--~~  151 (315)
                        ..+..+ .|...+..+.|+|++.++++++.|+.+++|+..+++    .+.....|...|.+++|+|++. ++++  |+
T Consensus       219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs  298 (420)
T 4gga_A          219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT  298 (420)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred             cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence              333333 466889999999999999999999999999998764    3456677899999999999765 5554  45


Q ss_pred             CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee--CCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC
Q psy9936         152 RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA--GDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                      .|+.|++||+++++++..+.. ...+.++.|+|++..+++++  .|+.|+|||+.++ +++..+.+|. .|++++|+|||
T Consensus       299 ~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg  376 (420)
T 4gga_A          299 SDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDG  376 (420)
T ss_dssp             TTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCC
Confidence            799999999999998888874 56788999999999888765  7899999999999 9999999887 69999999999


Q ss_pred             e--EEEEcCCEEEecCCCc
Q psy9936         229 L--LATSRGNIVEFLKPPE  245 (315)
Q Consensus       229 ~--~~~~~~~~i~~~~~~~  245 (315)
                      .  +.++.|++|++|++..
T Consensus       377 ~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          377 ATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             SCEEEEETTTEEEEECCSC
T ss_pred             CEEEEEecCCeEEEEECCC
Confidence            5  3445699999999643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-33  Score=232.93  Aligned_cols=227  Identities=14%  Similarity=0.162  Sum_probs=196.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc---eEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK---TLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~   84 (315)
                      ...|.+++|+|++++|++++.||.|++|++...   +....+. |...|.++.|  ++.++++++ |+.|++|| .+...
T Consensus        59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~  135 (313)
T 3odt_A           59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLV  135 (313)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEE
T ss_pred             CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEE
Confidence            788999999999999999999999999998654   3444444 8889999999  455666665 89999999 44444


Q ss_pred             EEe-ecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          85 HCL-KVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDFSA-KKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        85 ~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      ..+ .+...+.++.|+| ++.++++++.|+.|++||  .++....+.. |...+.+++|+|++. +++++.|+.|++||+
T Consensus       136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~  212 (313)
T 3odt_A          136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM  212 (313)
T ss_dssp             EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEET
T ss_pred             EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEEC
Confidence            443 4668999999998 899999999999999999  4566777776 889999999999998 899999999999999


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-EEEEcCCEEE
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-LATSRGNIVE  239 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~~~~~~~i~  239 (315)
                      ++++++..+.+|...|++++|+|++ .|++++.||.|++||+.++ +++..+..+. ++.+++|+|++. ++++.|+.|+
T Consensus       213 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~  290 (313)
T 3odt_A          213 HTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG-SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVR  290 (313)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC-CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEE
T ss_pred             CchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC-ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEE
Confidence            9999999999999999999999999 5889999999999999998 8888888776 799999999995 5556799999


Q ss_pred             ecCCC
Q psy9936         240 FLKPP  244 (315)
Q Consensus       240 ~~~~~  244 (315)
                      +|+..
T Consensus       291 iw~~~  295 (313)
T 3odt_A          291 IFSQE  295 (313)
T ss_dssp             EEESC
T ss_pred             EEeCC
Confidence            99963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-34  Score=267.54  Aligned_cols=235  Identities=18%  Similarity=0.197  Sum_probs=197.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc--CceEEEEec-CCCceeEEEEeec--CcEEEEEe-CCeEEEEeCCCCE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV--RKTLACEMN-VMEEVYDIKWLHL--ETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      .++|++++|+|++++|++|+.||.|+|||+.  +++....+. |..+|.+++|+|+  +.+|++++ ||.|++||+.+..
T Consensus         9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A            9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            7899999999999999999999999999998  455666666 8899999999987  88888876 8999999996553


Q ss_pred             ---EEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCC--eEEEEeccCCCCeEEEEEcC-------------
Q psy9936          84 ---LHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIG--KIVSDFSAKKGKLSVMTQNP-------------  142 (315)
Q Consensus        84 ---~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~p-------------  142 (315)
                         +..+ .|...|.+++|+|+  +..+++++.||.|++||+.++  .....+..|...|.+++|+|             
T Consensus        89 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~  168 (753)
T 3jro_A           89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK  168 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG
T ss_pred             ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC
Confidence               2333 36689999999999  999999999999999999876  34455678999999999999             


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCC----cceeEeecccccEEEEEECCC---CCEEEEeeCCCcEEEEEccCCCC----Cee
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQ----KPLASLLCHKAGIQSVAVNHT---GTYMATSAGDSQLRIWDVRNLEG----PLN  211 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~sp~---g~~l~~~~~d~~i~iwd~~~~~~----~~~  211 (315)
                      ++.+|++|+.||.|++||++++    ..+..+.+|..+|++++|+|+   +.+|++|+.||.|++||+.++..    .+.
T Consensus       169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~  248 (753)
T 3jro_A          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL  248 (753)
T ss_dssp             GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBS
T ss_pred             CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEe
Confidence            5899999999999999999877    455677789999999999999   89999999999999999998621    222


Q ss_pred             EeccC-CCceeEEEccCCe--EEEEcCCEEEecCCC
Q psy9936         212 TFRTR-TPINNLAFSQRGL--LATSRGNIVEFLKPP  244 (315)
Q Consensus       212 ~~~~~-~~v~~~~~s~~g~--~~~~~~~~i~~~~~~  244 (315)
                      ....+ ..|++++|+|+|.  ++++.||.|++|+..
T Consensus       249 ~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            22223 3689999999995  334568999999973

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=249.89  Aligned_cols=198  Identities=11%  Similarity=0.140  Sum_probs=168.7

Q ss_pred             CcEEEEEEcCCC--CEEEEEcCCCeEEEEEccCceEE---------------------------------------EE--
Q psy9936          11 FGIYRMNYTKNG--RHLLLGGKRGHVAAFDWVRKTLA---------------------------------------CE--   47 (315)
Q Consensus        11 ~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~~~~~---------------------------------------~~--   47 (315)
                      ..|.+++|+|++  .+|++++.||.|++|++.++...                                       ..  
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            789999999998  79999999999999998765432                                       12  


Q ss_pred             ecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC-CC-EEEEe--------ecCCceEEEEEcCCC-ceEEEEcCCCeEEE
Q psy9936          48 MNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GI-ELHCL--------KVLNKVTRMEFLPYH-FLLATASEEGYLSW  116 (315)
Q Consensus        48 ~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~-~~~~~--------~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~  116 (315)
                      ..|...|.+++|+|++++|+++.|+.|++||+. +. .+..+        .|...|.+++|+|++ .+|++++.||.|++
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            238889999999999999999989999999997 33 23322        355789999999998 99999999999999


Q ss_pred             EEccCCeE----EEEeccCCC------------CeEEEEEcCCCCEEEEEcCCCeEEEEcCCC-CcceeEeeccccc---
Q psy9936         117 LDTSIGKI----VSDFSAKKG------------KLSVMTQNPYNACICLGHRNGTVTMWSPTV-QKPLASLLCHKAG---  176 (315)
Q Consensus       117 ~d~~~~~~----~~~~~~~~~------------~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---  176 (315)
                      ||+++++.    +..+..|..            .|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|...   
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  332 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSK  332 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccc
Confidence            99998876    677887775            8999999999999999998 9999999997 8888888888642   


Q ss_pred             ------------EEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCe
Q psy9936         177 ------------IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL  210 (315)
Q Consensus       177 ------------i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~  210 (315)
                                  +..++|+|++.+|++|+.||.|++||+.++ +.+
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~  377 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDI  377 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEE
T ss_pred             ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cce
Confidence                        334899999999999999999999999987 544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.6e-34  Score=241.69  Aligned_cols=235  Identities=14%  Similarity=0.134  Sum_probs=195.2

Q ss_pred             CCCcEEEEEEcCC---CCEEEEEcCCCeEEEEEccCce-EEEEec-CCCceeEEEE------eecCcEEEEEe-CCeEEE
Q psy9936           9 LQFGIYRMNYTKN---GRHLLLGGKRGHVAAFDWVRKT-LACEMN-VMEEVYDIKW------LHLETMFAVAQ-KDWVYI   76 (315)
Q Consensus         9 ~~~~v~~~~~s~~---~~~l~~~~~dg~i~v~~~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~l~~~~-~~~i~i   76 (315)
                      ...+|.+++|+|+   +.+|++++.||.|++||+.+++ ....+. |...|.++.|      +|++.+|++++ |+.|++
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence            3789999999998   6999999999999999999887 666666 8889999965      67888888876 899999


Q ss_pred             EeCCCC--EEEEeec-C----CceEEEE----EcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC---
Q psy9936          77 YDNQGI--ELHCLKV-L----NKVTRME----FLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP---  142 (315)
Q Consensus        77 ~~~~~~--~~~~~~~-~----~~v~~~~----~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p---  142 (315)
                      ||+...  .+..+.. .    ..+.+++    |+|++.++++++.|+.|++||+++++.... ..|...+.+++|+|   
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence            999543  3444432 2    3788888    788999999999999999999998887544 56888999999999   


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCCcceeEee-----cccccEEEEEECCCCC-EEEEeeCCCcEEEEEccCCCC--------
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQKPLASLL-----CHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNLEG--------  208 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~~~--------  208 (315)
                      ++.+|++++.|+.|++||+++++++..+.     +|...|++++|+|++. +|++++.||.|++||++....        
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g  302 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG  302 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence            99999999999999999999887766655     8999999999999998 899999999999999986521        


Q ss_pred             ----------CeeEeccCC-CceeEEEccCCe-EE--EEcCCEEEecCCC
Q psy9936         209 ----------PLNTFRTRT-PINNLAFSQRGL-LA--TSRGNIVEFLKPP  244 (315)
Q Consensus       209 ----------~~~~~~~~~-~v~~~~~s~~g~-~~--~~~~~~i~~~~~~  244 (315)
                                ++..+..|. +|++++|+|+|. ++  ++.|+.|++|+..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence                      344555555 699999999994 33  4569999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-34  Score=250.47  Aligned_cols=247  Identities=11%  Similarity=0.087  Sum_probs=203.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce---EEEEecC------------------------------------
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT---LACEMNV------------------------------------   50 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~------------------------------------   50 (315)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578899999999977665 57789999999888   5444431                                    


Q ss_pred             -------------------CCceeEEEEeecCcEE-EEEe-CCeEEEEeCC--C-CEEEEe---ecCCceEEEEEcCCCc
Q psy9936          51 -------------------MEEVYDIKWLHLETMF-AVAQ-KDWVYIYDNQ--G-IELHCL---KVLNKVTRMEFLPYHF  103 (315)
Q Consensus        51 -------------------~~~v~~~~~~~~~~~l-~~~~-~~~i~i~~~~--~-~~~~~~---~~~~~v~~~~~~~~~~  103 (315)
                                         ...|.+++|+|++++| ++++ |+.|++|++.  + ..+..+   .+...|.+++|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                               1259999999999986 6664 8999999986  3 444444   4558899999999999


Q ss_pred             eEEEEcCCCeEEEEEccCCeEEE----EeccCCCCeEEEEEcCC---CCEEEEEcCCCeEEEEcCCCCcceeE-eecccc
Q psy9936         104 LLATASEEGYLSWLDTSIGKIVS----DFSAKKGKLSVMTQNPY---NACICLGHRNGTVTMWSPTVQKPLAS-LLCHKA  175 (315)
Q Consensus       104 ~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~v~~~~~~p~---~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~  175 (315)
                      +|++++.+|.+++|++.++....    .+.+|...|++++|+|+   +++|++|+.|+.|++||+++++.+.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999998876543    67789999999999999   99999999999999999999988877 558999


Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--------------------------CCceeEEEccCCe
Q psy9936         176 GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--------------------------TPINNLAFSQRGL  229 (315)
Q Consensus       176 ~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------~~v~~~~~s~~g~  229 (315)
                      .|.+++|+ ++.+|++++.|+.|++||+.++ +++..+..+                          ..+.+++|+|++.
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            99999999 9999999999999999999998 777776532                          2578999999994


Q ss_pred             --EEEE-cCCEEEecCC--------------------CceeecccccccccCC
Q psy9936         230 --LATS-RGNIVEFLKP--------------------PEINFEPRRKANKAGG  259 (315)
Q Consensus       230 --~~~~-~~~~i~~~~~--------------------~~~~~~~~~~~~~~~~  259 (315)
                        ++++ .++.|++|+.                    .+++|+|++.+++.++
T Consensus       321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred             EEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence              3334 5888998865                    4577888665555444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.4e-33  Score=255.12  Aligned_cols=238  Identities=13%  Similarity=0.187  Sum_probs=203.4

Q ss_pred             cEEEeeC-CCc-EEEEEEcC--CCCEEEEEcCCCeEEEEEccCc--------eEEEEec-CCCceeEEEEeecCcEEEEE
Q psy9936           3 KQFDLDL-QFG-IYRMNYTK--NGRHLLLGGKRGHVAAFDWVRK--------TLACEMN-VMEEVYDIKWLHLETMFAVA   69 (315)
Q Consensus         3 ~~~~~~~-~~~-v~~~~~s~--~~~~l~~~~~dg~i~v~~~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~   69 (315)
                      ....+.. ... |.+++|+|  ++++|++++.||.|++||+.++        +....+. |...|.+++|+|++++|+++
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence            3445555 677 99999999  9999999999999999999755        5555565 88899999999999999988


Q ss_pred             eC-----CeEEEEeCCCCEEEEe-ecCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCC---CeEEEE
Q psy9936          70 QK-----DWVYIYDNQGIELHCL-KVLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKG---KLSVMT  139 (315)
Q Consensus        70 ~~-----~~i~i~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~v~~~~  139 (315)
                      ++     +.|++||. +..+..+ .|...|.+++|+|++. .+++++.|+.|++||+.+++.+..+..|..   .|.+++
T Consensus       135 ~~~~~~~~~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~  213 (615)
T 1pgu_A          135 GEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  213 (615)
T ss_dssp             ECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             ccCCCCccEEEEEEC-CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence            73     58999994 4444444 4668999999999997 899999999999999999999999999998   999999


Q ss_pred             EcCC-CCEEEEEcCCCeEEEEcCCCCcceeEe-e---cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         140 QNPY-NACICLGHRNGTVTMWSPTVQKPLASL-L---CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       140 ~~p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~-~---~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      |+|+ +++|++++.|+.|++||+++++.+..+ .   .|...|.+++|+ ++.+|++++.|+.|++||++++ +++..+.
T Consensus       214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~  291 (615)
T 1pgu_A          214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWT  291 (615)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEc
Confidence            9999 999999999999999999999999988 5   799999999999 9999999999999999999988 7777777


Q ss_pred             cC-----CCceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         215 TR-----TPINNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       215 ~~-----~~v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      .+     ..+.++.|+.... ++++.++.|++|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          292 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCCCcccCceeEEEeCCCCeEEEEECCCCEEEEEC
Confidence            65     3467777763333 44456888888876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=266.33  Aligned_cols=201  Identities=12%  Similarity=0.125  Sum_probs=178.1

Q ss_pred             eCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEE
Q psy9936           8 DLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELH   85 (315)
Q Consensus         8 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~   85 (315)
                      .....|++++|+|++++||+|+.||.|+||+..+.+....+.|...|.+++|+| +++|++++ |+.|++||+. +..+.
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE
Confidence            347899999999999999999999999999999888877777888999999999 77777765 8999999994 56666


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEE-----------EEeccCCCCeEEEEEcCC-CCEEEEEcCC
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV-----------SDFSAKKGKLSVMTQNPY-NACICLGHRN  153 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~~~~~v~~~~~~p~-~~~l~~~~~d  153 (315)
                      .+.+...|.+++|+|++++|++|+.||.|++||+.+++..           ..+.+|.+.|.+++|+|+ +..|++|+.|
T Consensus        94 ~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d  173 (902)
T 2oaj_A           94 TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY  173 (902)
T ss_dssp             EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred             EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence            7777889999999999999999999999999999988753           234568899999999996 4789999999


Q ss_pred             CeEEEEcCCCCcceeEeecc------------------cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee
Q psy9936         154 GTVTMWSPTVQKPLASLLCH------------------KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN  211 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~------------------~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~  211 (315)
                      +.| +||+++++++..+..|                  ...|++++|+|+|.+|++++.|+.|++||++++ +++.
T Consensus       174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g-~~~~  247 (902)
T 2oaj_A          174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG-HMIM  247 (902)
T ss_dssp             CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC-CEEE
T ss_pred             CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEE
Confidence            999 9999999888887755                  477999999999999999999999999999987 6654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-33  Score=256.88  Aligned_cols=253  Identities=9%  Similarity=0.028  Sum_probs=215.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc----eEEEEec-CCCc-eeEEEEee--cCcEEEEEe-CCeEEEEeCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK----TLACEMN-VMEE-VYDIKWLH--LETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~~~~~~~-~~~~-v~~~~~~~--~~~~l~~~~-~~~i~i~~~~   80 (315)
                      .+.|.+++|+|+|++|++++ ++.|++|++.++    +....+. |... |.+++|+|  ++++|++++ |+.|++||+.
T Consensus        18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~   96 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   96 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence            67899999999999999988 789999999988    7777776 8889 99999999  999999887 8999999994


Q ss_pred             -C--------CEEEEee-cCCceEEEEEcCCCceEEEEcCC----CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC-
Q psy9936          81 -G--------IELHCLK-VLNKVTRMEFLPYHFLLATASEE----GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-  145 (315)
Q Consensus        81 -~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-  145 (315)
                       +        .....+. +...|.+++|+|++++|++++.+    +.|.+||  .++.+..+..|...|.+++|+|+++ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (615)
T 1pgu_A           97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPM  174 (615)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCc
Confidence             2        2333333 56899999999999999999987    6888888  5778888999999999999999998 


Q ss_pred             EEEEEcCCCeEEEEcCCCCcceeEeecccc---cEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEe-c---cC-
Q psy9936         146 CICLGHRNGTVTMWSPTVQKPLASLLCHKA---GIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTF-R---TR-  216 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~-~---~~-  216 (315)
                      ++++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++.|+.|++||+.++ +++..+ .   .| 
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~  253 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQ  253 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCC
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccC
Confidence            899999999999999999999999999999   9999999999 999999999999999999998 888888 3   44 


Q ss_pred             CCceeEEEccCCe--EEEEcCCEEEecCCC--------------------ceeecccccccccCCcchhhhhhh
Q psy9936         217 TPINNLAFSQRGL--LATSRGNIVEFLKPP--------------------EINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       217 ~~v~~~~~s~~g~--~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      .+|.+++|+ ++.  +.++.|+.|++|+..                    .+.| +++..+++++.++.++...
T Consensus       254 ~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-CCCCeEEEEECCCCEEEEE
Confidence            479999999 874  344458999999871                    2233 3677788887777655543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.2e-34  Score=249.32  Aligned_cols=233  Identities=15%  Similarity=0.122  Sum_probs=189.0

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEE
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~   84 (315)
                      .+.|++++|+| ++.+|++++.||+|++||+.++.......   +...+.+++|+|++.+|++++ ||.|++||+++..+
T Consensus       164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~  243 (435)
T 4e54_B          164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL  243 (435)
T ss_dssp             SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee
Confidence            68899999998 68899999999999999998776544443   234578899999999999887 89999999987766


Q ss_pred             EEee-cCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEE---eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 HCLK-VLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSD---FSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ..+. |...|.+++|+|++. +|++++.|+.|++||+++++....   ..+|...|++++|+|+|++|++++.|+.|++|
T Consensus       244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred             EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence            5544 568999999999875 788999999999999987654333   35688999999999999999999999999999


Q ss_pred             cCCCCcceeEeecccc------cEEEEEECCCCCEEEEee------------CCCcEEEEEccCCCCCeeEec-cCC-Cc
Q psy9936         160 SPTVQKPLASLLCHKA------GIQSVAVNHTGTYMATSA------------GDSQLRIWDVRNLEGPLNTFR-TRT-PI  219 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~------~i~~~~~sp~g~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~-~~~-~v  219 (315)
                      |++++.....+..|..      .+....|+|++.++++++            .++.|++||..++ .++..+. .|. .|
T Consensus       324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g-~~~~~l~~~~~~~v  402 (435)
T 4e54_B          324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG-KMMCQLYDPESSGI  402 (435)
T ss_dssp             ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-CEEEEECCSSCCCC
T ss_pred             ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-cEEEEEeCCCCCcE
Confidence            9999888777765542      234567888877777664            2357999999998 7777764 343 57


Q ss_pred             eeE-EEccCCe-EEEEcCCEEEecCC
Q psy9936         220 NNL-AFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       220 ~~~-~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      .++ +|+|+|. ++++.|+.|++|++
T Consensus       403 ~s~~~fspdg~~lasg~d~~i~iW~~  428 (435)
T 4e54_B          403 SSLNEFNPMGDTLASAMGYHILIWSQ  428 (435)
T ss_dssp             CCEEEECTTSSCEEEECSSEEEECCC
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEC
Confidence            777 6999995 55566899999986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.1e-32  Score=229.57  Aligned_cols=234  Identities=15%  Similarity=0.230  Sum_probs=198.2

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      +.. ...|.+++|+|++++|++++.|+.|++|+........... +...+..+.+++++.+|++++ |+.+++||.....
T Consensus        82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~  161 (340)
T 4aow_A           82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC  161 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence            344 6789999999999999999999999999999888776665 667888899999998888876 8999999996654


Q ss_pred             EEEe---ecCCceEEEEEcCCC--ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          84 LHCL---KVLNKVTRMEFLPYH--FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        84 ~~~~---~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      ....   .+...+..++|++++  .++++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.|+.|++
T Consensus       162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~i  241 (340)
T 4aow_A          162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML  241 (340)
T ss_dssp             EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            4332   345789999999874  57889999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec---------cCC-CceeEEEccCC
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR---------TRT-PINNLAFSQRG  228 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~~-~v~~~~~s~~g  228 (315)
                      ||+++.+++..+. +...+.++.|+|++.++ +++.|+.|++||+++. ..+..+.         .|. .|++++|+|||
T Consensus       242 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  318 (340)
T 4aow_A          242 WDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWSADG  318 (340)
T ss_dssp             EETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTT-EEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred             EEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCC-eEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence            9999999888887 45789999999988655 5667999999999886 5555443         233 58999999999


Q ss_pred             eEE--EEcCCEEEecCC
Q psy9936         229 LLA--TSRGNIVEFLKP  243 (315)
Q Consensus       229 ~~~--~~~~~~i~~~~~  243 (315)
                      .++  ++.|+.|++|++
T Consensus       319 ~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          319 QTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             SEEEEEETTSCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeC
Confidence            543  346899999984

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=230.53  Aligned_cols=252  Identities=14%  Similarity=0.229  Sum_probs=207.1

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC-EEEEe
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI-ELHCL   87 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~-~~~~~   87 (315)
                      ..+|+||+++ +||+| .|++|+|||+.+++.+..+.   |...|.+++|+|++++|++++ |+.|++|++... .+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4679999986 77776 48999999999999887764   667899999999999999887 899999999654 44444


Q ss_pred             e-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936          88 K-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus        88 ~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                      . |...+.++  ++++..+++++.++.+.+|+.... ..+..+.+|...+..+.+++++++|++++.|+.|++||+++++
T Consensus       106 ~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          106 TSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             ECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             cCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            3 34555554  555779999999999999998765 4666788899999999999999999999999999999999875


Q ss_pred             c----eeEeecccccEEEEEECCCCCE---EEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEE--c
Q psy9936         166 P----LASLLCHKAGIQSVAVNHTGTY---MATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATS--R  234 (315)
Q Consensus       166 ~----~~~~~~~~~~i~~~~~sp~g~~---l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~--~  234 (315)
                      .    ......|.+.|.+++++|++..   +++++.++.|++||.... ...........+..+.|+|++.  ++++  .
T Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~  262 (318)
T 4ggc_A          184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFA  262 (318)
T ss_dssp             TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred             ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-cccccccceeeeeeeeecccccceEEEEEcC
Confidence            3    3444567889999999998663   346678899999999987 7777776777899999999983  3444  4


Q ss_pred             CCEEEecCC----------------CceeecccccccccCCcchhhhhhhh
Q psy9936         235 GNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       235 ~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                      |+.|++|+.                ++++|+|+++++++++.|+.++.+..
T Consensus       263 d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             TCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            789999976                67899999999999999998887753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.1e-32  Score=235.80  Aligned_cols=247  Identities=13%  Similarity=0.123  Sum_probs=197.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEE--eCCeEEEEeC-CCCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVA--QKDWVYIYDN-QGIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~i~~~-~~~~~~~   86 (315)
                      ..+|++++|+|||++|++|+.++ ++||++.+++......+. .+..+.+.+++..++..  .++.|++||. ++..+..
T Consensus        19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~   96 (355)
T 3vu4_A           19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR   96 (355)
T ss_dssp             CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence            78999999999999999998775 789999988776555433 57888899888777544  3679999998 4566666


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC-eEEEEeccCCCCeEEEEEcCCCCEEEE--EcCCCeEEEEcCCC
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG-KIVSDFSAKKGKLSVMTQNPYNACICL--GHRNGTVTMWSPTV  163 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~--~~~d~~i~i~d~~~  163 (315)
                      +.+...|.++.|+++.  ++++ .++.|++||+.++ +.+..+..   +...++++|  .++++  |+.||.|++||+++
T Consensus        97 ~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~  168 (355)
T 3vu4_A           97 IKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS  168 (355)
T ss_dssp             EECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC
T ss_pred             EECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCC
Confidence            7788899999999875  3333 3789999999987 66665554   445567777  56665  68899999999998


Q ss_pred             Cc---------------c-eeEeecccccEEEEEECCCCCEEEEeeCCCc-EEEEEccCCCCCeeEec-c-CC-CceeEE
Q psy9936         164 QK---------------P-LASLLCHKAGIQSVAVNHTGTYMATSAGDSQ-LRIWDVRNLEGPLNTFR-T-RT-PINNLA  223 (315)
Q Consensus       164 ~~---------------~-~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~-~-~~-~v~~~~  223 (315)
                      +.               + +..+.+|..+|++++|+|+|++|++|+.|++ |++||++++ +++..+. + |. +|++++
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~  247 (355)
T 3vu4_A          169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMK  247 (355)
T ss_dssp             ------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEE
T ss_pred             CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEE
Confidence            65               2 7788999999999999999999999999998 999999998 8888887 3 44 799999


Q ss_pred             EccCCeE--EEEcCCEEEecCC---------------------------------------CceeecccccccccCCcch
Q psy9936         224 FSQRGLL--ATSRGNIVEFLKP---------------------------------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       224 ~s~~g~~--~~~~~~~i~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      |+|+|.+  .++.|++|++|+.                                       ..++|+|+++.++.+..++
T Consensus       248 ~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          248 WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR  327 (355)
T ss_dssp             ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred             ECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence            9999954  3456899999975                                       3357999999999988877


Q ss_pred             hhhhh
Q psy9936         263 RAKVK  267 (315)
Q Consensus       263 ~~~~~  267 (315)
                      ..+..
T Consensus       328 ~~~~~  332 (355)
T 3vu4_A          328 MIETF  332 (355)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            65544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1e-31  Score=236.60  Aligned_cols=248  Identities=12%  Similarity=0.180  Sum_probs=213.1

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-   80 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-   80 (315)
                      ..+.. ..+|.+++|+  +.+|++++.||.|++||+.+++....+. |...|.++.|+  +..+++++ |+.|++||+. 
T Consensus       153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~  228 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET  228 (445)
T ss_dssp             EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS
T ss_pred             EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC
Confidence            34444 7889999997  5699999999999999999999888887 88899999995  44566555 8999999995 


Q ss_pred             CCEEEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          81 GIELHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        81 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      +..+..+ .|...+.+++|  ++.++++++.||.|++||+.+++.+..+.+|...+.+++|  ++.++++++.|+.|++|
T Consensus       229 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~  304 (445)
T 2ovr_B          229 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW  304 (445)
T ss_dssp             CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence            4455454 45688999998  6889999999999999999999999999999999999999  78899999999999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc---C-CCceeEEEccCCeEEEEcC
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT---R-TPINNLAFSQRGLLATSRG  235 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~-~~v~~~~~s~~g~~~~~~~  235 (315)
                      |+++++.+..+.+|...+.++.+  ++.+|++|+.||.|++||++++ +++..+..   | .+|.+++|+++-.++++.|
T Consensus       305 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d  381 (445)
T 2ovr_B          305 DVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD  381 (445)
T ss_dssp             ETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEECSSEEEEEETT
T ss_pred             ECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccCCCCCCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999998887  4679999999999999999998 88888875   3 3699999986545666779


Q ss_pred             CEEEecCC---------------------CceeecccccccccCCcchh
Q psy9936         236 NIVEFLKP---------------------PEINFEPRRKANKAGGSVQR  263 (315)
Q Consensus       236 ~~i~~~~~---------------------~~~~~~~~~~~~~~~~~~~~  263 (315)
                      +.|++|+.                     .+++|+|++..+++++.++.
T Consensus       382 g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          382 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            99999976                     45789999999999988875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-33  Score=242.78  Aligned_cols=208  Identities=11%  Similarity=0.158  Sum_probs=171.6

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc---CceEEEEec-------------CCCceeEEE--EeecCcEEEE
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV---RKTLACEMN-------------VMEEVYDIK--WLHLETMFAV   68 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~~   68 (315)
                      +....+|.+++|+|++++|++++.||.|++||+.   +++....+.             +...+.++.  +++++.+|++
T Consensus       108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred             ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence            3447899999999999999999999999999984   443333221             345566666  5577888888


Q ss_pred             Ee-CCeEEEEeCC-CCEEEEee---cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEEEcC
Q psy9936          69 AQ-KDWVYIYDNQ-GIELHCLK---VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMTQNP  142 (315)
Q Consensus        69 ~~-~~~i~i~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~p  142 (315)
                      ++ |+.|++||+. +..+..+.   |...|.+++|+|++.+|++++.||.|++||+++++.+..+. .|...|.+++|+|
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            87 8999999994 45555554   56899999999999999999999999999999999998876 6777899996654


Q ss_pred             ----CCCEEEEEcCCCeEEEEcCCCCcceeEeec--------------------------ccccEEEEEECCCCCEEEEe
Q psy9936         143 ----YNACICLGHRNGTVTMWSPTVQKPLASLLC--------------------------HKAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       143 ----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~~i~~~~~sp~g~~l~~~  192 (315)
                          ++.+|++|+.|+.|++||+++++.+..+.+                          |...|++++|+ ++.+|++|
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~  346 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD  346 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec
Confidence                677999999999999999999887776654                          45568888998 77899999


Q ss_pred             eCCCcEEEEEccCCCCCeeEeccC
Q psy9936         193 AGDSQLRIWDVRNLEGPLNTFRTR  216 (315)
Q Consensus       193 ~~d~~i~iwd~~~~~~~~~~~~~~  216 (315)
                      +.|+.|++||+.++ ++...+..+
T Consensus       347 ~~d~~i~~wd~~~~-~~~~~~~~~  369 (437)
T 3gre_A          347 EATSSIVMFSLNEL-SSSKAVISP  369 (437)
T ss_dssp             GGGTEEEEEETTCG-GGCEEEECC
T ss_pred             CCCCeEEEEECCCc-ccceEEecc
Confidence            99999999999998 777777653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.2e-32  Score=239.19  Aligned_cols=249  Identities=13%  Similarity=0.238  Sum_probs=210.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~   86 (315)
                      ..+|.++++  ++++|++|+.||.|++||+.+++....+. |...|.+++|  ++.+|++++ ||.|++||+. +..+..
T Consensus       133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  208 (435)
T 1p22_A          133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT  208 (435)
T ss_dssp             CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            456888776  78999999999999999999999888887 8899999998  677888776 8999999995 455555


Q ss_pred             ee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEE---EEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          87 LK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV---SDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        87 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      +. |...|.+++|++  ..+++++.||.|++||+.++...   ..+.+|...|.+++|  +++++++|+.|+.|++||++
T Consensus       209 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~  284 (435)
T 1p22_A          209 LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS  284 (435)
T ss_dssp             ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence            43 558899999974  58999999999999999887654   667789999999999  78899999999999999999


Q ss_pred             CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEEcCCEEEec
Q psy9936         163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATSRGNIVEFL  241 (315)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~~~~i~~~  241 (315)
                      +++.+..+.+|...|.+++|  ++.++++|+.||.|++||++++ .++..+..|. .|.+++|++.-.++++.|+.|++|
T Consensus       285 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          285 TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW  361 (435)
T ss_dssp             TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEE
T ss_pred             cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEE
Confidence            99999999999999999999  4689999999999999999998 8888888776 699999954435566679999999


Q ss_pred             CC-------------------------CceeecccccccccCCcchhhhhhhhhH
Q psy9936         242 KP-------------------------PEINFEPRRKANKAGGSVQRAKVKKIVR  271 (315)
Q Consensus       242 ~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (315)
                      ++                         .+++|  ++..+++++.++.++.+....
T Consensus       362 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             ECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence            74                         34555  778899999999888776543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-32  Score=241.28  Aligned_cols=223  Identities=13%  Similarity=0.083  Sum_probs=189.5

Q ss_pred             CcEEEEEEcCCCCEE-EEEcCCCeEEEEEcc--CceEEEEe---cCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE
Q psy9936          11 FGIYRMNYTKNGRHL-LLGGKRGHVAAFDWV--RKTLACEM---NVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      ..|.+++|+|++++| ++++.||.|++|++.  +++....+   .+...|.+++|+|++.+|++++ ++.|++|++....
T Consensus       103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred             CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence            479999999999996 899999999999998  77777666   3668899999999999998887 7999999984322


Q ss_pred             E------EEeecCCceEEEEEcCC---CceEEEEcCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          84 L------HCLKVLNKVTRMEFLPY---HFLLATASEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        84 ~------~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                      .      ....|...|.+++|+|+   +.+|++++.|+.|++||+.+++.+.. +.+|...|.+++|+ ++++|++++.|
T Consensus       183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d  261 (450)
T 2vdu_B          183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD  261 (450)
T ss_dssp             CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred             cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence            1      12346689999999999   99999999999999999999988877 56899999999999 99999999999


Q ss_pred             CeEEEEcCCCCcceeEeecc-------------------------cccEEEEEECCCCCEEEEee-CCCcEEEEEc--cC
Q psy9936         154 GTVTMWSPTVQKPLASLLCH-------------------------KAGIQSVAVNHTGTYMATSA-GDSQLRIWDV--RN  205 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~-------------------------~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~--~~  205 (315)
                      +.|++||+++++++..+..+                         ...|.+++|+|++++|++++ .|+.|++|++  ..
T Consensus       262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~  341 (450)
T 2vdu_B          262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ  341 (450)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS
T ss_pred             CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC
Confidence            99999999999888877632                         35689999999999999998 8999999999  33


Q ss_pred             CC--CCeeEeccCCCceeEEEccCCeEEEEc
Q psy9936         206 LE--GPLNTFRTRTPINNLAFSQRGLLATSR  234 (315)
Q Consensus       206 ~~--~~~~~~~~~~~v~~~~~s~~g~~~~~~  234 (315)
                      ..  .++..+..+..+.+++|+|++.+++..
T Consensus       342 ~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~  372 (450)
T 2vdu_B          342 KGDLALKQIITFPYNVISLSAHNDEFQVTLD  372 (450)
T ss_dssp             TTCEEEEEEEECSSCEEEEEEETTEEEEEEC
T ss_pred             CCceeeccEeccCCceEEEEecCCcEEEEEe
Confidence            21  345556677789999999977666653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-34  Score=249.92  Aligned_cols=228  Identities=10%  Similarity=0.049  Sum_probs=181.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCC-----ceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME-----EVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~   83 (315)
                      ...|.+++|||+|++||+++.||.|++|+.++  ++..+.|..     .+.+++|+|||++|++++ ||+|++||+.++.
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            67899999999999999999999999999654  555555443     599999999999999998 8999999996552


Q ss_pred             --------EEEee-----cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE---EEEe-ccCCCCeEEEEEcCCCCE
Q psy9936          84 --------LHCLK-----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI---VSDF-SAKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        84 --------~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~v~~~~~~p~~~~  146 (315)
                              +..+.     |...|.+++|+|+|  +++++.|++|++||+..+..   .+.+ .+|...|.+++|+  |++
T Consensus       163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~  238 (588)
T 2j04_A          163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYK  238 (588)
T ss_dssp             TTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTE
T ss_pred             cccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCE
Confidence                    34432     34689999999999  78888899999999987763   3456 4788899999999  689


Q ss_pred             EEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEE--CCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEE
Q psy9936         147 ICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV--NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAF  224 (315)
Q Consensus       147 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~--sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  224 (315)
                      |++++ +++|++||+.+++......+|.+.+..++|  +|++..|++++.||+ ++|...                .+++
T Consensus       239 LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~  300 (588)
T 2j04_A          239 VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHV  300 (588)
T ss_dssp             EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEE
T ss_pred             EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEE
Confidence            99887 699999999987763433389999999999  999999999999999 999875                1446


Q ss_pred             ccCCeEEEEcCCEEEecCC--------------CceeecccccccccCCcc
Q psy9936         225 SQRGLLATSRGNIVEFLKP--------------PEINFEPRRKANKAGGSV  261 (315)
Q Consensus       225 s~~g~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~  261 (315)
                      +||+.++++.|++++.|+.              .+++|+|||+.+|.++..
T Consensus       301 spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          301 TADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             ECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred             CCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence            6666555555666666654              336666666666655544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.5e-33  Score=237.36  Aligned_cols=220  Identities=13%  Similarity=0.125  Sum_probs=181.9

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE---EEEe-ecCCceEEEEEcC--CCceEEEEcCCCeEEEEEccCC
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE---LHCL-KVLNKVTRMEFLP--YHFLLATASEEGYLSWLDTSIG  122 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~---~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~  122 (315)
                      |.+.|++++|+|+|++|++++ |++|++||+....   +..+ .|...|.+++|+|  ++.+|++++.|++|++||++++
T Consensus        12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~   91 (316)
T 3bg1_A           12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG   91 (316)
T ss_dssp             --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred             ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence            889999999999999999887 8999999995432   2333 4678999999986  4889999999999999999887


Q ss_pred             --eEEEEeccCCCCeEEEEEcCC--CCEEEEEcCCCeEEEEcCCCCcc---eeEeecccccEEEEEECCC----------
Q psy9936         123 --KIVSDFSAKKGKLSVMTQNPY--NACICLGHRNGTVTMWSPTVQKP---LASLLCHKAGIQSVAVNHT----------  185 (315)
Q Consensus       123 --~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~sp~----------  185 (315)
                        .....+.+|...|.+++|+|+  +.+|++|+.|+.|++||++++..   ...+.+|...+.+++|+|+          
T Consensus        92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  171 (316)
T 3bg1_A           92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP  171 (316)
T ss_dssp             CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred             cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccc
Confidence              466678889999999999998  78999999999999999987632   3455689999999999998          


Q ss_pred             -------CCEEEEeeCCCcEEEEEccCCC--CCeeEeccCC-CceeEEEccCC----e--EEEEcCCEEEecCC------
Q psy9936         186 -------GTYMATSAGDSQLRIWDVRNLE--GPLNTFRTRT-PINNLAFSQRG----L--LATSRGNIVEFLKP------  243 (315)
Q Consensus       186 -------g~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~-~v~~~~~s~~g----~--~~~~~~~~i~~~~~------  243 (315)
                             +.+|++|+.|+.|++||++...  .++..+..|. .|.+++|+|++    .  +.++.|++|++|++      
T Consensus       172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~  251 (316)
T 3bg1_A          172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN  251 (316)
T ss_dssp             CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred             cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc
Confidence                   4789999999999999997541  2455566665 69999999986    3  34456999999953      


Q ss_pred             --------------CceeecccccccccCCcchhhhhhhh
Q psy9936         244 --------------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       244 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                                    .+++|+|++.++++++.++.++.+..
T Consensus       252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          252 TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence                          46889999999999999998887753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.5e-32  Score=237.89  Aligned_cols=268  Identities=14%  Similarity=0.209  Sum_probs=213.6

Q ss_pred             EEeeCCCcEEEEEEcCCC----------CEEEEEcCC----CeEEEEEcc--------------------------Cce-
Q psy9936           5 FDLDLQFGIYRMNYTKNG----------RHLLLGGKR----GHVAAFDWV--------------------------RKT-   43 (315)
Q Consensus         5 ~~~~~~~~v~~~~~s~~~----------~~l~~~~~d----g~i~v~~~~--------------------------~~~-   43 (315)
                      +...+.-+..++.|.|+.          .++++|+..    ..|.++++.                          +++ 
T Consensus        40 ~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~  119 (430)
T 2xyi_A           40 MTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKI  119 (430)
T ss_dssp             EEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CE
T ss_pred             hhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCce
Confidence            344557788999999975          467777653    467777543                          111 


Q ss_pred             -EEEEecCCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCC-----------CEEEE-eecCCceEEEEEcCCCc-eEEE
Q psy9936          44 -LACEMNVMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQG-----------IELHC-LKVLNKVTRMEFLPYHF-LLAT  107 (315)
Q Consensus        44 -~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~-----------~~~~~-~~~~~~v~~~~~~~~~~-~l~~  107 (315)
                       ....+.|.+.|++++|+|+ +.+|++++ +|.|++|++..           ..+.. ..|...+.+++|+|++. +|++
T Consensus       120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence             2344558899999999997 67888876 89999999843           33333 34668899999999988 9999


Q ss_pred             EcCCCeEEEEEccCCeE-------EEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeEEEEcCCCC---cceeEeeccccc
Q psy9936         108 ASEEGYLSWLDTSIGKI-------VSDFSAKKGKLSVMTQNP-YNACICLGHRNGTVTMWSPTVQ---KPLASLLCHKAG  176 (315)
Q Consensus       108 ~~~d~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~  176 (315)
                      ++.||.|++||+.++..       ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   +++..+..|...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            99999999999987321       455678999999999999 6779999999999999999987   577788889999


Q ss_pred             EEEEEECCCCC-EEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC-e-E-EEEcCCEEEecCC--------
Q psy9936         177 IQSVAVNHTGT-YMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG-L-L-ATSRGNIVEFLKP--------  243 (315)
Q Consensus       177 i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g-~-~-~~~~~~~i~~~~~--------  243 (315)
                      |++++|+|++. +|++|+.||.|++||+++...++..+..|. +|.+++|+|++ . + .++.|+.|++|+.        
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            99999999987 789999999999999998547788887665 79999999998 2 3 3446899998853        


Q ss_pred             ----------------------Cceeeccccc-ccccCCcchhhhhhhhhHH
Q psy9936         244 ----------------------PEINFEPRRK-ANKAGGSVQRAKVKKIVRE  272 (315)
Q Consensus       244 ----------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  272 (315)
                                            ..++|+|++. ++++++.++.++.++....
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                                  5678999998 8889998888777765433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=257.50  Aligned_cols=184  Identities=14%  Similarity=0.120  Sum_probs=154.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL-   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~-   87 (315)
                      ..+|.+++|+| |++|++++.|++|++||+.+++.+..+.+...|++++|+|++++|++++ ||.|++||+.+.....+ 
T Consensus        58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~  136 (902)
T 2oaj_A           58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK  136 (902)
T ss_dssp             CCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence            67899999999 8899999999999999999999988888888999999999999999887 89999999976654321 


Q ss_pred             ------------ecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccC------------------CCCeE
Q psy9936          88 ------------KVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAK------------------KGKLS  136 (315)
Q Consensus        88 ------------~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------------------~~~v~  136 (315)
                                  .|..+|.+++|+|+ +..+++++.||.| +||+++++.+..+..|                  ...|.
T Consensus       137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred             eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence                        24578999999996 5789999999999 9999999988888765                  46799


Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeE--e---ec-------------ccccEEEEEEC----CCC-CEEEEee
Q psy9936         137 VMTQNPYNACICLGHRNGTVTMWSPTVQKPLAS--L---LC-------------HKAGIQSVAVN----HTG-TYMATSA  193 (315)
Q Consensus       137 ~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~--~---~~-------------~~~~i~~~~~s----p~g-~~l~~~~  193 (315)
                      +++|+|+|++|++|+.|+.|++||+++++++..  +   ..             |..+|++++|+    |++ .+|++|+
T Consensus       216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~  295 (902)
T 2oaj_A          216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK  295 (902)
T ss_dssp             EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence            999999999999999999999999999887653  2   11             34579999995    443 4566664


Q ss_pred             CC
Q psy9936         194 GD  195 (315)
Q Consensus       194 ~d  195 (315)
                      .|
T Consensus       296 ~~  297 (902)
T 2oaj_A          296 SI  297 (902)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-32  Score=231.49  Aligned_cols=223  Identities=13%  Similarity=0.154  Sum_probs=186.2

Q ss_pred             EEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC---EEEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEE
Q psy9936          45 ACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI---ELHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSW  116 (315)
Q Consensus        45 ~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~---~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~  116 (315)
                      ...+. |...|.+++|+|++++|++++ |+.|++|++...   .+..+ .|...|.+++|+|+  +.+|++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            34444 889999999999999999886 899999998532   22233 36689999999987  899999999999999


Q ss_pred             EEccCCe--EEEEeccCCCCeEEEEEcCC--CCEEEEEcCCCeEEEEcCCCCc--ceeEeecccccEEEEEECC------
Q psy9936         117 LDTSIGK--IVSDFSAKKGKLSVMTQNPY--NACICLGHRNGTVTMWSPTVQK--PLASLLCHKAGIQSVAVNH------  184 (315)
Q Consensus       117 ~d~~~~~--~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~sp------  184 (315)
                      ||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+..|...|.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999987  67778889999999999999  9999999999999999999873  3445668999999999999      


Q ss_pred             -------CCCEEEEeeCCCcEEEEEccCCCCC----eeEeccCC-CceeEEEccC---CeE--EEEcCCEEEecCC----
Q psy9936         185 -------TGTYMATSAGDSQLRIWDVRNLEGP----LNTFRTRT-PINNLAFSQR---GLL--ATSRGNIVEFLKP----  243 (315)
Q Consensus       185 -------~g~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~-~v~~~~~s~~---g~~--~~~~~~~i~~~~~----  243 (315)
                             ++.+|++++.|+.|++||+++. ..    ...+..|. +|.+++|+|+   +.+  .++.|+.|++|+.    
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETT-TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCC-CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                   6999999999999999999876 43    34455555 6999999999   743  3445899998865    


Q ss_pred             -----------------CceeecccccccccCCcchhhhhhh
Q psy9936         244 -----------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       244 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                                       .+++|+|+++++++++.++.++.+.
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence                             4678999999999998887665554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.1e-30  Score=224.16  Aligned_cols=235  Identities=11%  Similarity=0.085  Sum_probs=200.2

Q ss_pred             EeeCCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-
Q psy9936           6 DLDLQFGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-   81 (315)
Q Consensus         6 ~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-   81 (315)
                      .+.....+.+++|+|+|++| ++++.++.|++||+.+++....+.+...+.+++|+|++++|+++.  ++.|++||+.+ 
T Consensus        27 ~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           27 TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence            34456679999999999977 677789999999999999998888777999999999999776554  68999999965 


Q ss_pred             CEEEEeecCCceEEEEEcCCCceE-EEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEcCCCeEEEE
Q psy9936          82 IELHCLKVLNKVTRMEFLPYHFLL-ATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACI-CLGHRNGTVTMW  159 (315)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~i~i~  159 (315)
                      ..+..+.+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+. .+..++|+|+++++ ++++.++.|++|
T Consensus       107 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~  185 (391)
T 1l0q_A          107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVI  185 (391)
T ss_dssp             EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            444556667889999999999877 688889999999999999888887654 57999999999977 577889999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEee---CCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe-E-EE-E
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA---GDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL-L-AT-S  233 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~-~  233 (315)
                      |+++++.+..+. +...+.+++|+|+|++|++++   .++.|++||+.++ +++..+..+..+.+++|+|+|. + ++ +
T Consensus       186 d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          186 DTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVGPDPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             ETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred             ECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEecCCCccEEEEccCCCEEEEEcC
Confidence            999998777776 567889999999999999887   6899999999998 8888888888889999999994 3 33 3


Q ss_pred             cCCEEEecCC
Q psy9936         234 RGNIVEFLKP  243 (315)
Q Consensus       234 ~~~~i~~~~~  243 (315)
                      .++.|++|++
T Consensus       264 ~d~~v~v~d~  273 (391)
T 1l0q_A          264 FXNTVSVIDT  273 (391)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCEEEEEEC
Confidence            4899999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.7e-30  Score=216.94  Aligned_cols=235  Identities=13%  Similarity=0.189  Sum_probs=193.1

Q ss_pred             EeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-
Q psy9936           6 DLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-   81 (315)
Q Consensus         6 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-   81 (315)
                      .+.. ...|++++|+|++++|++|+.||.|++|++.+++.+..+. |...+.+  +++++.++++++ ++.+.+|+... 
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE--EEEETTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE--eecCCCEEEEEecCCceEeeecCCC
Confidence            3334 5679999999999999999999999999999999988877 6666655  455677888776 78999999843 


Q ss_pred             -CEEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe----EEEEeccCCCCeEEEEEcCCCCE---EEEEcC
Q psy9936          82 -IELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK----IVSDFSAKKGKLSVMTQNPYNAC---ICLGHR  152 (315)
Q Consensus        82 -~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~p~~~~---l~~~~~  152 (315)
                       ..+.. ..|...+..+.+++++.++++++.|+.|++||+.+++    .......+.+.+..++++|++..   +++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  219 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  219 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence             33333 3466889999999999999999999999999998764    23445567888999999997763   346778


Q ss_pred             CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee--CCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe
Q psy9936         153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA--GDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL  229 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~  229 (315)
                      ++.|++||.+......... +...+..+.|+|++..+++++  .|+.|++||++++ +++..+.+|. +|++++|+|+|.
T Consensus       220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCC
Confidence            9999999999887665554 778899999999999887654  7999999999999 9999999886 699999999995


Q ss_pred             --EEEEcCCEEEecCCC
Q psy9936         230 --LATSRGNIVEFLKPP  244 (315)
Q Consensus       230 --~~~~~~~~i~~~~~~  244 (315)
                        +.++.|++|++|+..
T Consensus       298 ~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          298 TVASAAADETLRLWRCF  314 (318)
T ss_dssp             CEEEEETTTEEEEECCS
T ss_pred             EEEEEecCCeEEEEECC
Confidence              344569999999964

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.4e-31  Score=231.94  Aligned_cols=228  Identities=14%  Similarity=0.242  Sum_probs=193.6

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEE-eCCeEEEEeCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~   81 (315)
                      ..+.. ..+|.+++|  ++++|++|+.||.|++||+.+++....+. |...|.+++|++  .+++++ .|+.|++||+..
T Consensus       167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS
T ss_pred             EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC
Confidence            34455 778999988  78899999999999999999999888887 888999999974  355555 489999999954


Q ss_pred             C-EE----EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          82 I-EL----HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        82 ~-~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      . ..    ....|...|.+++|  +++++++++.||.|++||+.+++.+..+..|...+.+++|  +++++++|+.||.|
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i  318 (435)
T 1p22_A          243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI  318 (435)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCE
T ss_pred             CCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence            3 22    22346688999999  6789999999999999999999999999999999999998  46899999999999


Q ss_pred             EEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCC---------CeeEeccCC-CceeEEEcc
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG---------PLNTFRTRT-PINNLAFSQ  226 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~-~v~~~~~s~  226 (315)
                      ++||+++++++..+.+|...|.+++|  ++.+|++|+.||.|++||+.++ .         ++..+..|. +|.+++|++
T Consensus       319 ~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  395 (435)
T 1p22_A          319 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA-LDPRAPAGTLCLRTLVEHSGRVFRLQFDE  395 (435)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH-TSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             EEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC-CCccccccchheeeccCCCCCeEEEEeCC
Confidence            99999999999999999999999998  7889999999999999999865 3         567777766 699999954


Q ss_pred             CCeEEEEcCCEEEecCC
Q psy9936         227 RGLLATSRGNIVEFLKP  243 (315)
Q Consensus       227 ~g~~~~~~~~~i~~~~~  243 (315)
                      .-.+.++.|+.|++|+.
T Consensus       396 ~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          396 FQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             SCEEECCSSSEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEEC
Confidence            43455556999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.5e-32  Score=228.81  Aligned_cols=227  Identities=13%  Similarity=0.193  Sum_probs=192.5

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEc-cCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC----
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDW-VRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ----   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~----   80 (315)
                      ...|.+++|+|+++ +|++++.||.|++||+ .+++......  |...|.+++|+| +.+|++++ |+.|++||+.    
T Consensus        56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence            78999999999999 9999999999999999 8887766566  888999999999 87777776 8999999984    


Q ss_pred             ------CCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-Ce--EEEEeccCCCCeEEEEEcC-CCCEEEEE
Q psy9936          81 ------GIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-GK--IVSDFSAKKGKLSVMTQNP-YNACICLG  150 (315)
Q Consensus        81 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~--~~~~~~~~~~~v~~~~~~p-~~~~l~~~  150 (315)
                            +..+..+.+...+.+++|+|++  +++++.++.|++||+++ +.  .......|...+.+++|+| ++++++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          135 GVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             BCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             ccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence                  2323344566899999999987  89999999999999987 54  3334456788899999999 99999999


Q ss_pred             cCCCeEEEEcCCCC------cceeEeecccc---------cEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         151 HRNGTVTMWSPTVQ------KPLASLLCHKA---------GIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       151 ~~d~~i~i~d~~~~------~~~~~~~~~~~---------~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      +.||.|++|+++..      +.+..+..|..         .|.+++|+|++++|++++.||.|++||+.++ +++..+..
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~  291 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNFAK  291 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCC
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-hHhhhhhc
Confidence            99999999999887      78888888865         9999999999999999999999999999998 88888887


Q ss_pred             C-C-CceeEEEccCCeE--EEEcCCE-EEecC
Q psy9936         216 R-T-PINNLAFSQRGLL--ATSRGNI-VEFLK  242 (315)
Q Consensus       216 ~-~-~v~~~~~s~~g~~--~~~~~~~-i~~~~  242 (315)
                      | . +|.+++  |+|.+  .++.|+. .+.+.
T Consensus       292 ~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          292 FNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            6 5 688988  88853  4455776 44433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.4e-31  Score=231.49  Aligned_cols=251  Identities=13%  Similarity=0.185  Sum_probs=210.3

Q ss_pred             EeeC-CCc-EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC
Q psy9936           6 DLDL-QFG-IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus         6 ~~~~-~~~-v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      .+.. .+. +.+  ++++|++|++|+.||.|++||+.+++....+. |...|.+++|+  +.++++++ |+.|++||+..
T Consensus       113 ~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          113 VLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             EEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             EecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence            3445 344 455  45568999999999999999999999988887 88999999997  45666665 89999999954


Q ss_pred             -CEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          82 -IELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        82 -~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                       ..+..+. |...|.++.|+  +..+++++.||.|++||+.+++.+..+..|...+.+++|  +++++++|+.|+.|++|
T Consensus       189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw  264 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVW  264 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEE
T ss_pred             CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEE
Confidence             4444443 56889999996  567999999999999999999999999999999999999  78899999999999999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEEEcCCEE
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATSRGNIV  238 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~~~~~~i  238 (315)
                      |+++++++..+.+|...|.+++|  ++.++++++.|+.|++||++++ +++..+..|. .+.++.++++-.++++.|+.|
T Consensus       265 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i  341 (445)
T 2ovr_B          265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELKDNILVSGNADSTV  341 (445)
T ss_dssp             EGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEETTEEEEEETTSCE
T ss_pred             ECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeE
Confidence            99999999999999999999999  7899999999999999999998 8888888776 578888865545666779999


Q ss_pred             EecCC-------------------CceeecccccccccCCcchhhhhhhh
Q psy9936         239 EFLKP-------------------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       239 ~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                      ++|+.                   .+++|  ++.++++++.++.++.+..
T Consensus       342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEET
T ss_pred             EEEECCCCcEEEEEccCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEEC
Confidence            99986                   22344  4678999998887776653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.1e-31  Score=232.59  Aligned_cols=224  Identities=11%  Similarity=0.057  Sum_probs=160.3

Q ss_pred             EcCCCCEEEEEcCCCeEEEEEccCceEEEE-----ec-CCCceeEEEEee--------cCcEEEEEe-CCeEEEEeCC-C
Q psy9936          18 YTKNGRHLLLGGKRGHVAAFDWVRKTLACE-----MN-VMEEVYDIKWLH--------LETMFAVAQ-KDWVYIYDNQ-G   81 (315)
Q Consensus        18 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-----~~-~~~~v~~~~~~~--------~~~~l~~~~-~~~i~i~~~~-~   81 (315)
                      +++++.+|++++.|++|++||..++.....     +. |.+.|++++|+|        |+++|++++ |++|+|||+. +
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            445667899999999999999998865432     33 889999999998        789999887 8999999984 3


Q ss_pred             CE-EEEeecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEe-------------------------ccCCCC
Q psy9936          82 IE-LHCLKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDF-------------------------SAKKGK  134 (315)
Q Consensus        82 ~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~-------------------------~~~~~~  134 (315)
                      .. .....+..++.+++|+|++ .+|++++.|++|++||+.+++.....                         .+|...
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            33 3456788999999999987 58999999999999999877543221                         346667


Q ss_pred             eEEEEEc-CCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECC--------------------CCCEEEEee
Q psy9936         135 LSVMTQN-PYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNH--------------------TGTYMATSA  193 (315)
Q Consensus       135 v~~~~~~-p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp--------------------~g~~l~~~~  193 (315)
                      +.++.|+ |+++.|++++.|+.+++||+.+++....+..|...+..+.+.|                    ++.++++|+
T Consensus       257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs  336 (393)
T 4gq1_A          257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS  336 (393)
T ss_dssp             CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred             ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence            8888886 7999999999999999999998876666665555444443333                    344677888


Q ss_pred             CCCcEEEEEccCCCCCeeEec-cCCCceeEEEccCCeEE-EEcCCEEEecC
Q psy9936         194 GDSQLRIWDVRNLEGPLNTFR-TRTPINNLAFSQRGLLA-TSRGNIVEFLK  242 (315)
Q Consensus       194 ~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~-~~~~~~i~~~~  242 (315)
                      .||.|++||+.++ .+..... .+.+|++++|+|||.++ ++.++.+.+|.
T Consensus       337 ~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr  386 (393)
T 4gq1_A          337 QHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR  386 (393)
T ss_dssp             TTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred             CCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            9999999999998 6665554 44589999999999644 44566665554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.2e-30  Score=228.67  Aligned_cols=257  Identities=11%  Similarity=0.082  Sum_probs=208.0

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe------cCCCceeEEEEeecCcEEEEEe-CCeEEEEeC
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM------NVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN   79 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~   79 (315)
                      +.....+.+++|+|++.++++++.++.|++||+.+++....+      .|...+.+++|+|++.+++++. ++.|++||+
T Consensus       119 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          119 FKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             EECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred             EcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence            334556779999997778888888899999999999887643      2567899999999999998886 799999999


Q ss_pred             CC-CEEEEee-cCCceEEEEEcCCCceEE-EEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc-----
Q psy9936          80 QG-IELHCLK-VLNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH-----  151 (315)
Q Consensus        80 ~~-~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-----  151 (315)
                      .+ ..+..+. +...+.+++|+|++..++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+|+++++++     
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCT
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCc
Confidence            54 4445554 457899999999998775 5557999999999999988887754 4589999999999998887     


Q ss_pred             ---CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEE-EEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccC
Q psy9936         152 ---RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM-ATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQR  227 (315)
Q Consensus       152 ---~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  227 (315)
                         .|+.|++||+++++.+..+ .|...+.+++|+|+++++ ++++.|+.|++||+.++ +.+..+.....+.+++|+|+
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~~~s~d  355 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIPVFDKPNTIALSPD  355 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEEEEEECTT
T ss_pred             cccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEecCCCCCCeEEEcCC
Confidence               5889999999998777665 466788999999999755 66689999999999988 78888876678999999999


Q ss_pred             Ce-EEE-Ec---------------CCEEEecCC---------------CceeecccccccccCCc-chhhhh
Q psy9936         228 GL-LAT-SR---------------GNIVEFLKP---------------PEINFEPRRKANKAGGS-VQRAKV  266 (315)
Q Consensus       228 g~-~~~-~~---------------~~~i~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~  266 (315)
                      |. +++ +.               ||.|.+|++               ..++|+|+++.++.++. ++.++.
T Consensus       356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred             CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence            95 333 33               358998876               56889999998877654 554443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-30  Score=222.97  Aligned_cols=227  Identities=12%  Similarity=0.098  Sum_probs=180.2

Q ss_pred             CcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC--EEEEe
Q psy9936          11 FGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI--ELHCL   87 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~--~~~~~   87 (315)
                      .++..+++.++++.+ ++++.++.|++||..+++.+..+.+...|.++.|+++.  ++++.++.|++||+...  .+..+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~  136 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDD  136 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCC
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEe
Confidence            357778899988877 46777899999999999999999888899999998764  55667999999999543  33333


Q ss_pred             ecCCceEEEEEcCCCceEEE--EcCCCeEEEEEccCCe---------------E-EEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          88 KVLNKVTRMEFLPYHFLLAT--ASEEGYLSWLDTSIGK---------------I-VSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        88 ~~~~~v~~~~~~~~~~~l~~--~~~d~~i~~~d~~~~~---------------~-~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      ..  +...+++++  .++++  |+.+|.|++||+.++.               + +..+.+|...|++++|+|+|++|++
T Consensus       137 ~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s  212 (355)
T 3vu4_A          137 IR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT  212 (355)
T ss_dssp             EE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence            33  445566777  55655  5889999999998765               2 6778899999999999999999999


Q ss_pred             EcCCCe-EEEEcCCCCcceeEee-c-ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC-CCeeEe------------
Q psy9936         150 GHRNGT-VTMWSPTVQKPLASLL-C-HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE-GPLNTF------------  213 (315)
Q Consensus       150 ~~~d~~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~-~~~~~~------------  213 (315)
                      |+.|++ |++||+++++++..+. + |...|++++|+|+|++|++++.|++|++||++... .....+            
T Consensus       213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  292 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE  292 (355)
T ss_dssp             EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence            999998 9999999999999998 5 99999999999999999999999999999997651 111111            


Q ss_pred             ------cc----CCCceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         214 ------RT----RTPINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       214 ------~~----~~~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                            ..    ..+...++|+|+|.+  +.+.||.++.|+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                  00    112477999999943  3345899998873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-30  Score=221.34  Aligned_cols=206  Identities=17%  Similarity=0.270  Sum_probs=174.6

Q ss_pred             eeC-CCcEEEEEEcC--CCCEEEEEcCCCeEEEEEccCc---------eEEEEec-CCCceeEEEEeec--CcEEEEEe-
Q psy9936           7 LDL-QFGIYRMNYTK--NGRHLLLGGKRGHVAAFDWVRK---------TLACEMN-VMEEVYDIKWLHL--ETMFAVAQ-   70 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~--~~~~l~~~~~dg~i~v~~~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~-   70 (315)
                      +.. ..+|.+++|+|  ++++|++++.||.|++||+.++         +....+. |...|.+++|+|+  +.+|++++ 
T Consensus        53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A           53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence            444 78899999999  6999999999999999999876         4455555 8889999999999  88888876 


Q ss_pred             CCeEEEEeCCCCE-EEE--------------eecCCceEEEEEcCC---CceEEEEcCCCeEEEEEccCCeE--EEEecc
Q psy9936          71 KDWVYIYDNQGIE-LHC--------------LKVLNKVTRMEFLPY---HFLLATASEEGYLSWLDTSIGKI--VSDFSA  130 (315)
Q Consensus        71 ~~~i~i~~~~~~~-~~~--------------~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~  130 (315)
                      |+.|++||+.... +..              ..+...+.+++|+|+   +.++++++.++.+.+|+...+..  +..+.+
T Consensus       133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (351)
T 3f3f_A          133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG  212 (351)
T ss_dssp             TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC
T ss_pred             CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC
Confidence            8999999984321 110              124478999999997   89999999999998888877764  677888


Q ss_pred             CCCCeEEEEEcCCC----CEEEEEcCCCeEEEEcCCCC------------------------------------------
Q psy9936         131 KKGKLSVMTQNPYN----ACICLGHRNGTVTMWSPTVQ------------------------------------------  164 (315)
Q Consensus       131 ~~~~v~~~~~~p~~----~~l~~~~~d~~i~i~d~~~~------------------------------------------  164 (315)
                      |...|++++|+|++    ++|++++.||.|++||++++                                          
T Consensus       213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
T 3f3f_A          213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS  292 (351)
T ss_dssp             CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CC
T ss_pred             CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence            99999999999998    89999999999999998864                                          


Q ss_pred             ----cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEe
Q psy9936         165 ----KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       165 ----~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~  213 (315)
                          +.+..+.+|...|++++|+|++++|++++.||.|++||+.++ ..+..+
T Consensus       293 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~-~~~~~~  344 (351)
T 3f3f_A          293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS-NEFKCM  344 (351)
T ss_dssp             SEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT-SCEEEE
T ss_pred             cccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC-cchhhe
Confidence                456677789999999999999999999999999999999987 554443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=8.8e-30  Score=220.26  Aligned_cols=242  Identities=13%  Similarity=0.107  Sum_probs=199.9

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEE-EE-eCCeEEEEeCC-CCEEEEeecCCceEEEEEc
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFA-VA-QKDWVYIYDNQ-GIELHCLKVLNKVTRMEFL   99 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~i~~~~-~~~~~~~~~~~~v~~~~~~   99 (315)
                      ..+++++.++.|++||+.+++....+.+...+.+++|+|++++++ ++ .++.|++||+. ++.+..+.....+.+++|+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s   82 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS   82 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence            367788899999999999999998888777799999999998764 44 48999999995 4555566667799999999


Q ss_pred             CCCceEE-EEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEcCCCeEEEEcCCCCcceeEeecccccE
Q psy9936         100 PYHFLLA-TASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACI-CLGHRNGTVTMWSPTVQKPLASLLCHKAGI  177 (315)
Q Consensus       100 ~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i  177 (315)
                      |++++|+ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.++.|++||+++++.+..+..+ ..+
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~  160 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP  160 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCc
Confidence            9999775 4556799999999999888877754 468999999999977 68888999999999999888888754 556


Q ss_pred             EEEEECCCCCEE-EEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEE---cCCEEEecCC--------
Q psy9936         178 QSVAVNHTGTYM-ATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATS---RGNIVEFLKP--------  243 (315)
Q Consensus       178 ~~~~~sp~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~---~~~~i~~~~~--------  243 (315)
                      .+++|+|+|++| ++++.++.|++||++++ ..+..+..+..+.+++|+|+|.  ++++   .++.|++|++        
T Consensus       161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~  239 (391)
T 1l0q_A          161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR  239 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEE
Confidence            999999999987 56778899999999998 7777777777899999999994  3334   4789999886        


Q ss_pred             -------Cceeeccccccc-ccCCcchhhhhh
Q psy9936         244 -------PEINFEPRRKAN-KAGGSVQRAKVK  267 (315)
Q Consensus       244 -------~~~~~~~~~~~~-~~~~~~~~~~~~  267 (315)
                             ..++|+|+++.+ ++++.++.++..
T Consensus       240 ~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          240 IPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI  271 (391)
T ss_dssp             EECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EecCCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence                   468899999877 565666655544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-30  Score=224.54  Aligned_cols=231  Identities=13%  Similarity=0.138  Sum_probs=169.7

Q ss_pred             CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeec---CcEEEEEe-CCeEEEEeCC-CCE
Q psy9936          10 QFGIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL---ETMFAVAQ-KDWVYIYDNQ-GIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-~~~i~i~~~~-~~~   83 (315)
                      ...|.+++|+| ++.+|++++.||.|++||+.+++....+.+...+.++.|+|.   +.+++++. ++.|++||+. +..
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            67899999999 778999999999999999999999999888899999999985   44777765 8999999995 444


Q ss_pred             EEEee-cCCceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCe-EEEEe---------------ccCCCCeEEEEEcCCCC
Q psy9936          84 LHCLK-VLNKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGK-IVSDF---------------SAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        84 ~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~---------------~~~~~~v~~~~~~p~~~  145 (315)
                      +..+. |...|.+++|+|++. +|++++.||.|++||++++. .+..+               ..|...|.+++|+|+++
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  258 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL  258 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred             eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence            44444 668999999999998 58999999999999998764 33333               46888999999999999


Q ss_pred             EEEEEcCCCeEEEEcCCCCc-----------------------------------------------ceeEeecccccEE
Q psy9936         146 CICLGHRNGTVTMWSPTVQK-----------------------------------------------PLASLLCHKAGIQ  178 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~-----------------------------------------------~~~~~~~~~~~i~  178 (315)
                      +|++++.|+.|++||+++++                                               ++..+.+|...|+
T Consensus       259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~  338 (408)
T 4a11_B          259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD  338 (408)
T ss_dssp             EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence            99999999999999987643                                               3455667999999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC--eE-EEEcCCEEEecCC
Q psy9936         179 SVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG--LL-ATSRGNIVEFLKP  243 (315)
Q Consensus       179 ~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g--~~-~~~~~~~i~~~~~  243 (315)
                      +++|+|++++|++++.||.|++||+.+. +++.........  ..+.|..  .+ ....++.+++|+.
T Consensus       339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~  403 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCNILAWVPSLY-EPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWSH  403 (408)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred             EEEEcCCCCEEEEECCCCeEEEEeCCCC-CccCCCCceEec--cccccccceeecccCccCceeecCC
Confidence            9999999999999999999999999998 666554433322  2223322  22 3345788888864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-30  Score=222.38  Aligned_cols=223  Identities=11%  Similarity=0.019  Sum_probs=171.0

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEcc---------CceEEEEec--CCCceeEEEEee--cCcEEEEEe-CCeEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWV---------RKTLACEMN--VMEEVYDIKWLH--LETMFAVAQ-KDWVYI   76 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~---------~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~-~~~i~i   76 (315)
                      ..|.++.|+|+   +++++.|+.|++|+..         +++.+..+.  |.+.|.+++|+|  ++.++++++ |+.|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45566777887   8999999999999765         444344433  567899999999  999999776 899999


Q ss_pred             EeCCCCEE-EEe--ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEE-EEecc-CCCCeEEEEEcCCCCEEEEEc
Q psy9936          77 YDNQGIEL-HCL--KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV-SDFSA-KKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        77 ~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~v~~~~~~p~~~~l~~~~  151 (315)
                      ||+..... ...  .+...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |.+.|++++|+|+|.+|++++
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            99965443 333  23357999999999999999999999999999999877 77887 999999999999999999999


Q ss_pred             CCCeEEEEcCCCCcceeEeec---ccccEE--EEEECCCCCEEEEeeC-CCcEEEEEccCCCCCeeEeccCCCceeEEEc
Q psy9936         152 RNGTVTMWSPTVQKPLASLLC---HKAGIQ--SVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTFRTRTPINNLAFS  225 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~---~~~~i~--~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  225 (315)
                       ++.|++||+++++.+..+..   |...+.  +++|+|+|++|++++. |+.+++|++... ......   .++..++|+
T Consensus       234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~-~~~~~~---~~~~~~~~~  308 (343)
T 3lrv_A          234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK-TKNWTK---DEESALCLQ  308 (343)
T ss_dssp             -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCSEEE---EEEEECCC-
T ss_pred             -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc-ccceEe---cCceeEecC
Confidence             45999999999877665543   334443  6999999999999998 999999999766 332222   456677777


Q ss_pred             c---CC--eEEEEcCCEEEec
Q psy9936         226 Q---RG--LLATSRGNIVEFL  241 (315)
Q Consensus       226 ~---~g--~~~~~~~~~i~~~  241 (315)
                      |   ++  .++++.|+.+..+
T Consensus       309 ~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          309 SDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             ---CCCCEEEEEEETTEEEEE
T ss_pred             ccccccceeEEEecCCceEEE
Confidence            7   54  3445567777654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.4e-30  Score=225.72  Aligned_cols=259  Identities=11%  Similarity=0.100  Sum_probs=182.5

Q ss_pred             EEEeeCCCcEEEEEEc---CCCCEEEEEcCCCeEEEEEccCc----------eEEEEecCCCceeEEEE-----------
Q psy9936           4 QFDLDLQFGIYRMNYT---KNGRHLLLGGKRGHVAAFDWVRK----------TLACEMNVMEEVYDIKW-----------   59 (315)
Q Consensus         4 ~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~v~~~~~~----------~~~~~~~~~~~v~~~~~-----------   59 (315)
                      .+.+.++..++++.|.   |++..+++++.++.|.+|+....          ..+..+.+..++..+.|           
T Consensus         9 ~~~lpl~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (393)
T 4gq1_A            9 QYQLPLNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLH   88 (393)
T ss_dssp             EEECCTTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--
T ss_pred             ceEecCCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcccccccc
Confidence            3556667888899984   44444444445778999975321          11222233344444444           


Q ss_pred             ---------eecCcEEEEEe-CCeEEEEeCCCCEEEE---e----ecCCceEEEEEcC--------CCceEEEEcCCCeE
Q psy9936          60 ---------LHLETMFAVAQ-KDWVYIYDNQGIELHC---L----KVLNKVTRMEFLP--------YHFLLATASEEGYL  114 (315)
Q Consensus        60 ---------~~~~~~l~~~~-~~~i~i~~~~~~~~~~---~----~~~~~v~~~~~~~--------~~~~l~~~~~d~~i  114 (315)
                               .+++.+|++++ |++|++||........   +    .|...|++++|+|        ++++|++++.|++|
T Consensus        89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence                     34556788776 8999999996544322   1    3668999999998        78999999999999


Q ss_pred             EEEEccCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCCcceeE------------------------
Q psy9936         115 SWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQKPLAS------------------------  169 (315)
Q Consensus       115 ~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~~~~~~------------------------  169 (315)
                      ++||+.++..+..+..|...+.+++|+|++. +|++++.|++|++||+++++....                        
T Consensus       169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            9999998888888888999999999999875 899999999999999987754322                        


Q ss_pred             -eecccccEEEEEEC-CCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-------------------CceeEEEcc--
Q psy9936         170 -LLCHKAGIQSVAVN-HTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-------------------PINNLAFSQ--  226 (315)
Q Consensus       170 -~~~~~~~i~~~~~s-p~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------------~v~~~~~s~--  226 (315)
                       ..+|...+.++.|+ |+|..|++++.|+++++||+..+ .....+..+.                   ......|+|  
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY  327 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence             13466788889886 89999999999999999999876 4433332221                   123344544  


Q ss_pred             CCeEEEE--cCCEEEecCC----------------CceeecccccccccCCcchh
Q psy9936         227 RGLLATS--RGNIVEFLKP----------------PEINFEPRRKANKAGGSVQR  263 (315)
Q Consensus       227 ~g~~~~~--~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~  263 (315)
                      ++.++++  .|+.|++|+.                .+++|+|+|++||+++.++.
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            3455554  3899999976                67899999999999987764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=4.1e-29  Score=218.94  Aligned_cols=231  Identities=9%  Similarity=0.047  Sum_probs=195.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-CEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-IELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~~~~   85 (315)
                      ...|.+++|+|++.++++++.++.|++||+.+++....+. +...+.+++|+|++..++++.  ++.|++||+.. ..+.
T Consensus       169 ~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          169 LGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             CCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence            4578999999999999999999999999999998888776 777899999999998775443  79999999954 4455


Q ss_pred             EeecCCceEEEEEcCCCceEEEEc--------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEcCCCeE
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATAS--------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNAC-ICLGHRNGTV  156 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~~i  156 (315)
                      .+.....+.+++|+|+++.+++++        .|+.|++||+.+++.+..+. |...+..++|+|+++. +++++.++.|
T Consensus       249 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v  327 (433)
T 3bws_A          249 KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKI  327 (433)
T ss_dssp             ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEE
T ss_pred             EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEE
Confidence            566667799999999999998887        58899999999988776653 5557899999999975 5666899999


Q ss_pred             EEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeC---------------CCcEEEEEccCCCCCeeEeccCCCcee
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG---------------DSQLRIWDVRNLEGPLNTFRTRTPINN  221 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~v~~  221 (315)
                      .+||+++++.+..+. +...+.+++|+|+|++|++++.               ||.|++||+.++ +.+..+..+..+.+
T Consensus       328 ~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~~~~~~~  405 (433)
T 3bws_A          328 EVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEAGNQPTG  405 (433)
T ss_dssp             EEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEECSSSEEE
T ss_pred             EEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-cEEEEecCCCCCce
Confidence            999999988887776 7788999999999999888876               579999999998 88888887778999


Q ss_pred             EEEccCCeE-E-EEc-CCEEEecCC
Q psy9936         222 LAFSQRGLL-A-TSR-GNIVEFLKP  243 (315)
Q Consensus       222 ~~~s~~g~~-~-~~~-~~~i~~~~~  243 (315)
                      ++|+|+|.+ + ++. ++.|++|++
T Consensus       406 ~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          406 LDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEEe
Confidence            999999953 3 343 899999974

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1e-29  Score=210.31  Aligned_cols=191  Identities=13%  Similarity=0.100  Sum_probs=146.3

Q ss_pred             CcEEEEEEcCC----CCEEEEEcC--------------------CCeEEEEEc-cCceEEEEec-CCCceeEEEEee---
Q psy9936          11 FGIYRMNYTKN----GRHLLLGGK--------------------RGHVAAFDW-VRKTLACEMN-VMEEVYDIKWLH---   61 (315)
Q Consensus        11 ~~v~~~~~s~~----~~~l~~~~~--------------------dg~i~v~~~-~~~~~~~~~~-~~~~v~~~~~~~---   61 (315)
                      ..|.+++|+||    ++++++++.                    |+.|++|++ .+++.+..+. |...+..++|+|   
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence            36788888888    777776553                    777888887 3466655544 677778888888   


Q ss_pred             cCcEEEEEe-CCeEEEEeCC-CCEEEEee-cC---CceEEEEEcCCCceE------------EEEcCCCeEEEEEccCCe
Q psy9936          62 LETMFAVAQ-KDWVYIYDNQ-GIELHCLK-VL---NKVTRMEFLPYHFLL------------ATASEEGYLSWLDTSIGK  123 (315)
Q Consensus        62 ~~~~l~~~~-~~~i~i~~~~-~~~~~~~~-~~---~~v~~~~~~~~~~~l------------~~~~~d~~i~~~d~~~~~  123 (315)
                      ++.+|++++ |++|+|||+. ++.+..+. +.   ..+.+++|+|+|.++            ++|+.|++|++||..+++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            668888876 8999999995 66677775 22   467788999999876            567889999999999998


Q ss_pred             EEEEe-----ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEE-EEEECCCCCEEEEeeCCCc
Q psy9936         124 IVSDF-----SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQ-SVAVNHTGTYMATSAGDSQ  197 (315)
Q Consensus       124 ~~~~~-----~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~sp~g~~l~~~~~d~~  197 (315)
                      .+..+     .+|...+.+..+  ++.++++++.|++|+|||+.+++++.++.+|...+. +++|+|||++|++|+.|++
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            87665     356655544444  378999999999999999999999999998887655 5899999999999999999


Q ss_pred             EEEEEc
Q psy9936         198 LRIWDV  203 (315)
Q Consensus       198 i~iwd~  203 (315)
                      |+|||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.2e-29  Score=215.30  Aligned_cols=229  Identities=13%  Similarity=0.113  Sum_probs=182.0

Q ss_pred             EEccCceEEEEec-CCCceeEEEEeec---CcEEEEEe-CCeEEEEeCC--CCEE-EE-eecCCceEEEEEcCCCceEEE
Q psy9936          37 FDWVRKTLACEMN-VMEEVYDIKWLHL---ETMFAVAQ-KDWVYIYDNQ--GIEL-HC-LKVLNKVTRMEFLPYHFLLAT  107 (315)
Q Consensus        37 ~~~~~~~~~~~~~-~~~~v~~~~~~~~---~~~l~~~~-~~~i~i~~~~--~~~~-~~-~~~~~~v~~~~~~~~~~~l~~  107 (315)
                      ++....+.+..+. |.+.|++++|+|+   |.+|++++ |+.|++||+.  +..+ .. ..|...|.+++|+|++.+|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            3444555566665 8899999999998   58888887 8999999995  3443 23 346789999999999999999


Q ss_pred             EcCCCeEEEEEccCCeEEEEeccCCCCeEEEEE--cCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc-----------
Q psy9936         108 ASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQ--NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK-----------  174 (315)
Q Consensus       108 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------  174 (315)
                      ++.||.|++||+.+++.+. +..|...|.+++|  +|++++|++++.|+.|++||+++++++..+..+.           
T Consensus       104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  182 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM  182 (368)
T ss_dssp             EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred             EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence            9999999999999888766 4569999999999  9999999999999999999999988777666432           


Q ss_pred             ------------------------------ccEEEEEECCCCCE----EEEeeCCCcEEEEEccCCC--CCeeEeccCC-
Q psy9936         175 ------------------------------AGIQSVAVNHTGTY----MATSAGDSQLRIWDVRNLE--GPLNTFRTRT-  217 (315)
Q Consensus       175 ------------------------------~~i~~~~~sp~g~~----l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~-  217 (315)
                                                    ..+.++++.+++..    +++++.|+.|++||++...  ..+..+..|. 
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  262 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS  262 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence                                          22344444444433    9999999999999998762  2344555554 


Q ss_pred             ------------CceeEEEccCCe--EEEEcCCEEEecCC----------------CceeecccccccccCCcchhhhh
Q psy9936         218 ------------PINNLAFSQRGL--LATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKV  266 (315)
Q Consensus       218 ------------~v~~~~~s~~g~--~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~  266 (315)
                                  +|++++|+|++.  +.++.|+.|++|+.                .+++|+|+++++++++.+...+.
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence                        599999999994  34456999999987                67999999999999988764443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.3e-30  Score=238.52  Aligned_cols=219  Identities=13%  Similarity=0.147  Sum_probs=184.6

Q ss_pred             CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC---EEEEe-ecCCceEEEEEcCC--CceEEEEcCCCeEEEEEccCC
Q psy9936          50 VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI---ELHCL-KVLNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIG  122 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~---~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~  122 (315)
                      |.++|++++|+|++++|++++ ||.|++||+.+.   ....+ .|..+|.+++|+|+  +.+|++++.||.|++||+.++
T Consensus         8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~   87 (753)
T 3jro_A            8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG   87 (753)
T ss_dssp             CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred             CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence            889999999999999888886 899999998533   22333 36689999999988  899999999999999999988


Q ss_pred             e--EEEEeccCCCCeEEEEEcCC--CCEEEEEcCCCeEEEEcCCCCc--ceeEeecccccEEEEEECC------------
Q psy9936         123 K--IVSDFSAKKGKLSVMTQNPY--NACICLGHRNGTVTMWSPTVQK--PLASLLCHKAGIQSVAVNH------------  184 (315)
Q Consensus       123 ~--~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~sp------------  184 (315)
                      +  .+..+..|...|.+++|+|+  ++++++|+.||.|++||++++.  ....+.+|...|.+++|+|            
T Consensus        88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~  167 (753)
T 3jro_A           88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT  167 (753)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------C
T ss_pred             cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccC
Confidence            6  67778889999999999999  9999999999999999999873  4455678999999999999            


Q ss_pred             -CCCEEEEeeCCCcEEEEEccCCC---CCeeEeccCC-CceeEEEccC---CeE--EEEcCCEEEecCC-----------
Q psy9936         185 -TGTYMATSAGDSQLRIWDVRNLE---GPLNTFRTRT-PINNLAFSQR---GLL--ATSRGNIVEFLKP-----------  243 (315)
Q Consensus       185 -~g~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~-~v~~~~~s~~---g~~--~~~~~~~i~~~~~-----------  243 (315)
                       ++.+|++|+.||.|++||++++.   .+...+..|. +|++++|+|+   +.+  .++.|+.|++|++           
T Consensus       168 ~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~  247 (753)
T 3jro_A          168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL  247 (753)
T ss_dssp             GGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB
T ss_pred             CCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEE
Confidence             58999999999999999999862   2234445555 6999999999   743  4445899998865           


Q ss_pred             ----------CceeecccccccccCCcchhhhhhh
Q psy9936         244 ----------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       244 ----------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                                .+++|+|++.++++++.++.++.+.
T Consensus       248 ~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             SSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             eccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence                      5789999999999998888665554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.1e-28  Score=202.57  Aligned_cols=225  Identities=8%  Similarity=0.038  Sum_probs=161.6

Q ss_pred             EEEEEcCCCC---EEEEEcCCCeEEEEEccCc---eEEEEec-CCC-------------------------ceeEEEEee
Q psy9936          14 YRMNYTKNGR---HLLLGGKRGHVAAFDWVRK---TLACEMN-VME-------------------------EVYDIKWLH   61 (315)
Q Consensus        14 ~~~~~s~~~~---~l~~~~~dg~i~v~~~~~~---~~~~~~~-~~~-------------------------~v~~~~~~~   61 (315)
                      .++-|-.-|-   .+++++. ..|++|+..++   +.+.++. |..                         .|..++|+|
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp  121 (356)
T 2w18_A           43 SAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS  121 (356)
T ss_dssp             EEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred             eeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence            4444544332   5666664 57999999887   5555544 221                         466778888


Q ss_pred             c----CcEEEEEe---------------------CCeEEEEeC-C-CCEEEE-eecCCceEEEEEcC---CCceEEEEcC
Q psy9936          62 L----ETMFAVAQ---------------------KDWVYIYDN-Q-GIELHC-LKVLNKVTRMEFLP---YHFLLATASE  110 (315)
Q Consensus        62 ~----~~~l~~~~---------------------~~~i~i~~~-~-~~~~~~-~~~~~~v~~~~~~~---~~~~l~~~~~  110 (315)
                      +    +++++.++                     ++.|++|++ . ++.+.. ..|...+..++|+|   ++..|++++.
T Consensus       122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~  201 (356)
T 2w18_A          122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI  201 (356)
T ss_dssp             ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred             CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence            8    66666532                     667788877 2 343333 34556777888888   6789999999


Q ss_pred             CCeEEEEEccCCeEEEEeccCC---CCeEEEEEcCCCCEE------------EEEcCCCeEEEEcCCCCcceeEe-----
Q psy9936         111 EGYLSWLDTSIGKIVSDFSAKK---GKLSVMTQNPYNACI------------CLGHRNGTVTMWSPTVQKPLASL-----  170 (315)
Q Consensus       111 d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~p~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~-----  170 (315)
                      |++|++||+.+++.++++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++.+..+     
T Consensus       202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p  281 (356)
T 2w18_A          202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLP  281 (356)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCC
T ss_pred             CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeecc
Confidence            9999999999999999998654   357788999999876            56788999999999999877655     


Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-Cc-eeEEEccCCeEEE--EcCCEEEecC
Q psy9936         171 LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PI-NNLAFSQRGLLAT--SRGNIVEFLK  242 (315)
Q Consensus       171 ~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v-~~~~~s~~g~~~~--~~~~~i~~~~  242 (315)
                      .+|...+.+..++  +.++|+++.|++|+|||+.++ +++.++..|. .+ ..++|+|||.+++  +.|++|++|+
T Consensus       282 ~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          282 PGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             TTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             CCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            3566555444443  889999999999999999999 9999998775 34 4589999996444  4599999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=2.4e-26  Score=195.73  Aligned_cols=251  Identities=11%  Similarity=0.055  Sum_probs=201.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEEcC-------CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeC
Q psy9936           9 LQFGIYRMNYTKNGRHLLLGGK-------RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDN   79 (315)
Q Consensus         9 ~~~~v~~~~~s~~~~~l~~~~~-------dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~   79 (315)
                      ....+..++|+|+|+++++++.       ++.|.+||..+++....+.....+..++|+|+++.++++.  ++.|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3567889999999998887764       5689999999999888887666788999999998666554  589999999


Q ss_pred             CC-CEEEEeecCC----------ceEEEEEcCCCceEEEEc--CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCE
Q psy9936          80 QG-IELHCLKVLN----------KVTRMEFLPYHFLLATAS--EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        80 ~~-~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~  146 (315)
                      .+ ..+..+....          .+.+++|+|+++.+++++  .++.|.+||+.+++.+..+..+...+..++|+|+|++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            54 4444444321          268899999998777765  4788999999999988888755566888999999999


Q ss_pred             EEEEcCCCeEEEEcCCCCcceeEeec----ccccEEEEEECCCCCEEEEeeC-CCcEEEEEccCCCCCeeEeccCCCcee
Q psy9936         147 ICLGHRNGTVTMWSPTVQKPLASLLC----HKAGIQSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTFRTRTPINN  221 (315)
Q Consensus       147 l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~  221 (315)
                      +++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|+++++++. ++.|.+||+.++ +.+..+..+.+ ..
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~-~~  276 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPES-LA  276 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECSSC-CC
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCCC-ce
Confidence            99999999999999999988777663    4556888999999997777665 489999999988 77777776554 67


Q ss_pred             EEEccCCe--EEEE-cCCEEEecCC---------------CceeecccccccccCCcc
Q psy9936         222 LAFSQRGL--LATS-RGNIVEFLKP---------------PEINFEPRRKANKAGGSV  261 (315)
Q Consensus       222 ~~~s~~g~--~~~~-~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~  261 (315)
                      ++|+|+|.  +++. .++.|.+|++               ..++|+|+++.+..+...
T Consensus       277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            99999994  4444 4789998876               567899999866555443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4.6e-26  Score=198.66  Aligned_cols=218  Identities=12%  Similarity=0.104  Sum_probs=168.6

Q ss_pred             CCEEEEEcCC------CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C---CeEEEEeCCCCEEEE-eecC
Q psy9936          22 GRHLLLGGKR------GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K---DWVYIYDNQGIELHC-LKVL   90 (315)
Q Consensus        22 ~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---~~i~i~~~~~~~~~~-~~~~   90 (315)
                      +..+++++.+      +.|++||++++.......|...+.+++|+|+|+.|+.++ +   ..|++||+.+..... ..+.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~  222 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  222 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence            5566665543      799999998665555555888999999999999998876 4   389999996544444 4456


Q ss_pred             CceEEEEEcCCCceEE-EEcCCCe--EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CC--eEEEEcCCCC
Q psy9936          91 NKVTRMEFLPYHFLLA-TASEEGY--LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NG--TVTMWSPTVQ  164 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~i~d~~~~  164 (315)
                      ..+.+++|+|+|+.|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|||++|++++. ++  .|.+||+.++
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            7899999999999877 5655554  99999998775 567778888999999999998888775 44  7888899887


Q ss_pred             cceeEeecccccEEEEEECCCCCEEEEeeCC---CcEEEEEccCCCCCeeEeccCCCceeEEEccCCeE--EEEcCC---
Q psy9936         165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGD---SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLL--ATSRGN---  236 (315)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~~---  236 (315)
                      +. ..+..+...+.+++|+|+|++|++++.+   ..|++||+.++ .. ..+..+..+.+++|+|||.+  .++.++   
T Consensus       302 ~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-~~-~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~  378 (415)
T 2hqs_A          302 AP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGS  378 (415)
T ss_dssp             CC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEE
T ss_pred             CE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC-CE-EEecCCCCcCCeEEcCCCCEEEEEEcCCCcc
Confidence            64 4455577789999999999999988764   58999999987 54 44544557899999999953  333344   


Q ss_pred             EEEecCC
Q psy9936         237 IVEFLKP  243 (315)
Q Consensus       237 ~i~~~~~  243 (315)
                      .|..|++
T Consensus       379 ~l~~~d~  385 (415)
T 2hqs_A          379 VLNLVST  385 (415)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            6777765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.5e-26  Score=199.40  Aligned_cols=214  Identities=10%  Similarity=0.009  Sum_probs=173.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCC---eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEE-e-C--CeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRG---HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVA-Q-K--DWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg---~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-~--~~i~i~~~~~~   82 (315)
                      ...+.+++|||||++|++++.++   .|++||+.+++......+...+.+++|+|||+.|+.+ + +  ..|++||+.+.
T Consensus       178 ~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          178 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            67899999999999999998875   9999999999887666688889999999999988844 3 3  35999999665


Q ss_pred             EEEEe-ecCCceEEEEEcCCCceEEEEcC-CC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC---Ce
Q psy9936          83 ELHCL-KVLNKVTRMEFLPYHFLLATASE-EG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN---GT  155 (315)
Q Consensus        83 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---~~  155 (315)
                      ....+ .+...+.+++|+|+|+.|++++. ++  .|.+||+.+++. ..+..+...+..++|+|+|++|++++.+   ..
T Consensus       258 ~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~  336 (415)
T 2hqs_A          258 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH  336 (415)
T ss_dssp             CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceE
Confidence            55554 45578999999999998888876 44  688889887764 4455567788999999999999888764   58


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC---cEEEEEccCCCCCeeEeccCC-CceeEEEccCC
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS---QLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                      |.+||+.+++. ..+..+. .+.+++|+|+|++|++++.++   .|++||+.+  .....+..+. .|.+++|+|.-
T Consensus       337 i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g--~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          337 IAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS--CCEEECCCSSSEEEEEEECCCC
T ss_pred             EEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC--CcEEEeeCCCCCCcCCcccccc
Confidence            99999998865 4455554 889999999999999988777   799999975  5666777664 69999999964

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=4.7e-26  Score=188.59  Aligned_cols=219  Identities=12%  Similarity=0.104  Sum_probs=173.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-ceEEEEec-C-CCceeEEEEeecCcEEEEEe-----CCeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-KTLACEMN-V-MEEVYDIKWLHLETMFAVAQ-----KDWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~-----~~~i~i~~~~~   81 (315)
                      ...|.+++|+|+|++|++++ ++.|++||+.+ ++...... + ...+.+++|+|++++|+++.     ...|+.++..+
T Consensus        41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~  119 (297)
T 2ojh_A           41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG  119 (297)
T ss_dssp             SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred             CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence            67899999999999999886 78999999998 77766654 3 36789999999999998887     24666667666


Q ss_pred             CEEEEeecCCceEEEEEcCCCceEE-EEcCCCeEEEEEccC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEEE
Q psy9936          82 IELHCLKVLNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSI-GKIVSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVTM  158 (315)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i  158 (315)
                      .....+.....+..++|+|+++.|+ +++.++.+.+|++.. +.....+..+...+.+++|+|+|++|++++ .++.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i  199 (297)
T 2ojh_A          120 GTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQI  199 (297)
T ss_dssp             CCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccE
Confidence            6666666666799999999999777 677889999998642 234456666778899999999999877665 5889999


Q ss_pred             EcCC-CCcceeEeecccccEEEEEECCCCCEEEEeeCC-----------CcEEEEEccCCCCCeeEe--ccC-CCceeEE
Q psy9936         159 WSPT-VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD-----------SQLRIWDVRNLEGPLNTF--RTR-TPINNLA  223 (315)
Q Consensus       159 ~d~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~--~~~-~~v~~~~  223 (315)
                      |+++ .+..+..+..|...+.+++|+|+|++|++++.+           +.|.+||+.++ ......  ..+ ..+..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~  278 (297)
T 2ojh_A          200 WRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-NVETLFDLFGGQGTMNSPN  278 (297)
T ss_dssp             EEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-SCEEEEEEEESTTTSCSCC
T ss_pred             EEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC-CceeeeccCCCCcccccce
Confidence            9876 456677777788889999999999999988765           56999999887 553333  233 3689999


Q ss_pred             EccCCeE
Q psy9936         224 FSQRGLL  230 (315)
Q Consensus       224 ~s~~g~~  230 (315)
                      |+|+|..
T Consensus       279 ~spdg~~  285 (297)
T 2ojh_A          279 WSPDGDE  285 (297)
T ss_dssp             BCTTSSE
T ss_pred             ECCCCCE
Confidence            9999953

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.3e-26  Score=216.43  Aligned_cols=246  Identities=11%  Similarity=0.057  Sum_probs=188.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC-CC-----eEEEEEccCceEEEEecC-C------------------------CceeEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK-RG-----HVAAFDWVRKTLACEMNV-M------------------------EEVYDIK   58 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~-dg-----~i~v~~~~~~~~~~~~~~-~------------------------~~v~~~~   58 (315)
                      ...+.+++|||||++|++++. ++     .|++||+.+++....+.. .                        ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999988 87     899999999987766652 2                        2378999


Q ss_pred             EeecCcEEEEEeCCeEEEEeCCCC---EEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC
Q psy9936          59 WLHLETMFAVAQKDWVYIYDNQGI---ELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK  134 (315)
Q Consensus        59 ~~~~~~~l~~~~~~~i~i~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  134 (315)
                      |+|||++|+++.++.|++||+.+.   ....+. +...+.+++|+|||++|++++. +.|++||+.+++.......+...
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSS
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccc
Confidence            999999999999999999999765   444443 4478999999999999998874 58999999988766544433332


Q ss_pred             ----------------eEEEEEcCCCCEEEEEcCCC---------------------------------eEEEEcCCC-C
Q psy9936         135 ----------------LSVMTQNPYNACICLGHRNG---------------------------------TVTMWSPTV-Q  164 (315)
Q Consensus       135 ----------------v~~~~~~p~~~~l~~~~~d~---------------------------------~i~i~d~~~-~  164 (315)
                                      +..++|+|||++|++++.|+                                 .|.+||+.+ +
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            36799999999999887665                                 899999998 7


Q ss_pred             cceeEee--cccccEEEEEECCCCCEEEEeeC-----CCcEEEEEccCCCCCeeEeccCC-----CceeEEEccCCeEEE
Q psy9936         165 KPLASLL--CHKAGIQSVAVNHTGTYMATSAG-----DSQLRIWDVRNLEGPLNTFRTRT-----PINNLAFSQRGLLAT  232 (315)
Q Consensus       165 ~~~~~~~--~~~~~i~~~~~sp~g~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~~~  232 (315)
                      +......  .|...+..++| |||++|++++.     +..|++||+.++ .+...+..+.     .+.+++|+|||.+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence            7554332  37788999999 99999987754     567999999988 6666555443     356899999996443


Q ss_pred             E--cCCEEEec--CC--------------Cce-eecccccccccC
Q psy9936         233 S--RGNIVEFL--KP--------------PEI-NFEPRRKANKAG  258 (315)
Q Consensus       233 ~--~~~~i~~~--~~--------------~~~-~~~~~~~~~~~~  258 (315)
                      +  .++.+++|  +.              ..+ .|+|+++.++..
T Consensus       353 ~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~  397 (741)
T 2ecf_A          353 SSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFR  397 (741)
T ss_dssp             EECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             EecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEE
Confidence            3  35544443  32              133 599999876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=9.6e-25  Score=196.16  Aligned_cols=249  Identities=11%  Similarity=0.077  Sum_probs=194.5

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEc--cCceEEEEecCCCceeEEEEee----cCcEEEEEe--CCeEEEEe
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDW--VRKTLACEMNVMEEVYDIKWLH----LETMFAVAQ--KDWVYIYD   78 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~--~~~i~i~~   78 (315)
                      +.....+.+++|+|||++|++++.++.|.+||+  .+++.+..+.+...+..++|+|    +|+++++++  +++|.+||
T Consensus       175 i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D  254 (543)
T 1nir_A          175 IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD  254 (543)
T ss_dssp             EECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred             EecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence            343334889999999999999999999999999  8898888888777889999999    999988876  79999999


Q ss_pred             CC-CCEEEEeec-----------C-CceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEE--EeccCCCCeEEEEEcC
Q psy9936          79 NQ-GIELHCLKV-----------L-NKVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVS--DFSAKKGKLSVMTQNP  142 (315)
Q Consensus        79 ~~-~~~~~~~~~-----------~-~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~p  142 (315)
                      .. .+.+..+..           . ..+.++.++|++. ++++...++.|.+||+.+++.+.  .+. +...+..++|+|
T Consensus       255 ~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp  333 (543)
T 1nir_A          255 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS  333 (543)
T ss_dssp             TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT
T ss_pred             ccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC
Confidence            85 444444432           2 2688999999765 56677789999999998765433  333 455678899999


Q ss_pred             CCCEEEEE-cCCCeEEEEcCCCCcceeEeec----ccccEEEEEECCC-CCEEEEee-CCCcEEEEEccC-------CCC
Q psy9936         143 YNACICLG-HRNGTVTMWSPTVQKPLASLLC----HKAGIQSVAVNHT-GTYMATSA-GDSQLRIWDVRN-------LEG  208 (315)
Q Consensus       143 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~sp~-g~~l~~~~-~d~~i~iwd~~~-------~~~  208 (315)
                      +|++|+++ ..+++|.+||+.+++.+..+..    |.+....+ ++|+ |.+++++. .|++|.+||+.+       . +
T Consensus       334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~-~  411 (543)
T 1nir_A          334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW-K  411 (543)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT-S
T ss_pred             CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcC-e
Confidence            99977655 5688999999999998887764    55444333 4677 66777775 689999999988       6 8


Q ss_pred             CeeEeccCC-CceeEEEccCCeEEEEc---------CCEEEecCC-------------------------Cceeeccccc
Q psy9936         209 PLNTFRTRT-PINNLAFSQRGLLATSR---------GNIVEFLKP-------------------------PEINFEPRRK  253 (315)
Q Consensus       209 ~~~~~~~~~-~v~~~~~s~~g~~~~~~---------~~~i~~~~~-------------------------~~~~~~~~~~  253 (315)
                      +++.+..+. ++..+.|+|+|..+.+.         +++|.+|+.                         ..++|+|+|+
T Consensus       412 ~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~  491 (543)
T 1nir_A          412 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  491 (543)
T ss_dssp             EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS
T ss_pred             EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC
Confidence            888998875 57899999999644442         568887766                         2567899999


Q ss_pred             ccccC
Q psy9936         254 ANKAG  258 (315)
Q Consensus       254 ~~~~~  258 (315)
                      .+..+
T Consensus       492 ~~~~s  496 (543)
T 1nir_A          492 EVWFS  496 (543)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.2e-25  Score=184.50  Aligned_cols=233  Identities=13%  Similarity=0.091  Sum_probs=175.9

Q ss_pred             EcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC-CEEEEe-ecC--CceEEEEEcCCCc
Q psy9936          28 GGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG-IELHCL-KVL--NKVTRMEFLPYHF  103 (315)
Q Consensus        28 ~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~-~~~~~~-~~~--~~v~~~~~~~~~~  103 (315)
                      ++.++.|++||+.+++......+...+.+++|+|++++|+++.++.|++||+.+ .....+ ...  ..+.+++|+|+++
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence            457899999999999988777788899999999999999999999999999966 444333 222  5788999999999


Q ss_pred             eEEEEcC--CC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcCCCeEEEEcCCC-CcceeEeecccccE
Q psy9936         104 LLATASE--EG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHRNGTVTMWSPTV-QKPLASLLCHKAGI  177 (315)
Q Consensus       104 ~l~~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i  177 (315)
                      +|++++.  ++  .|..+++.++. ...+..+. .+..++|+|++++|+ +++.++.+.+|+++. ......+..+...+
T Consensus        98 ~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (297)
T 2ojh_A           98 LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN  175 (297)
T ss_dssp             EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred             EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence            9999883  33  45555555544 34444333 488899999999877 677899999998542 23445666688899


Q ss_pred             EEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEE--EEcC-----------CEEEecC
Q psy9936         178 QSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLA--TSRG-----------NIVEFLK  242 (315)
Q Consensus       178 ~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~--~~~~-----------~~i~~~~  242 (315)
                      .+++|+|+|++|++++ .++.+++|++......+..+..+. .+..++|+|+|.++  ++.+           +.|..|+
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d  255 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD  255 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence            9999999999888766 588999999873225666665554 58899999999533  3333           3477665


Q ss_pred             C------------------CceeecccccccccCCcch
Q psy9936         243 P------------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       243 ~------------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      +                  ..++|+|+++.++.++.+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          256 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            4                  5678999999888776554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=7.9e-25  Score=185.36  Aligned_cols=233  Identities=14%  Similarity=0.139  Sum_probs=169.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC-CeEEEEEcc--CceE--EEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCC-C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR-GHVAAFDWV--RKTL--ACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQ-G   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d-g~i~v~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~-~   81 (315)
                      ...+.+++|+|+|++|++++.+ +.|.+|++.  +++.  +..+.....+..++|+|++++|+++.  ++.|.+|++. +
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            5678899999999988888776 899999987  5553  34444445789999999999776665  6889999983 2


Q ss_pred             ---CEEEEeecCCceEEEEEcCCCceEEEEc-CCCeEEEEEccC-CeEEE----Eecc-CCCCeEEEEEcCCCCEEEEE-
Q psy9936          82 ---IELHCLKVLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTSI-GKIVS----DFSA-KKGKLSVMTQNPYNACICLG-  150 (315)
Q Consensus        82 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~-~~~~v~~~~~~p~~~~l~~~-  150 (315)
                         .....+.....+.+++|+|+++++++++ .++.|.+||+.+ ++...    .+.. ....+..++|+|+|++++++ 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~  196 (343)
T 1ri6_A          117 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  196 (343)
T ss_dssp             EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence               2223344456789999999999887776 889999999987 64432    2222 33468889999999976554 


Q ss_pred             cCCCeEEEEcCCC--Ccc--eeEee----cc--cccEEEEEECCCCCEEEEe-eCCCcEEEEEccC--C-CCCeeEeccC
Q psy9936         151 HRNGTVTMWSPTV--QKP--LASLL----CH--KAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRN--L-EGPLNTFRTR  216 (315)
Q Consensus       151 ~~d~~i~i~d~~~--~~~--~~~~~----~~--~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~--~-~~~~~~~~~~  216 (315)
                      ..++.|.+||++.  ++.  ...+.    ++  ...+..++|+|+|++|+++ ..++.|.+||+..  + ...+..+..+
T Consensus       197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  276 (343)
T 1ri6_A          197 ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE  276 (343)
T ss_dssp             TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred             CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC
Confidence            5789999999954  432  22222    11  2356789999999988754 4789999999983  2 0344445555


Q ss_pred             CCceeEEEccCCe-EEEE--cCCEEEecC
Q psy9936         217 TPINNLAFSQRGL-LATS--RGNIVEFLK  242 (315)
Q Consensus       217 ~~v~~~~~s~~g~-~~~~--~~~~i~~~~  242 (315)
                      ..+..++|+|+|. ++++  .++.+.+|+
T Consensus       277 ~~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          277 TQPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             SSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            5689999999995 3333  368999984

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.5e-24  Score=194.87  Aligned_cols=241  Identities=10%  Similarity=0.037  Sum_probs=191.4

Q ss_pred             EEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeC--C-CCEEEEeecCCc
Q psy9936          17 NYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN--Q-GIELHCLKVLNK   92 (315)
Q Consensus        17 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~--~-~~~~~~~~~~~~   92 (315)
                      +|+|++.++++++.+++|.+||..+++++..+.....+..++|+|+|++|++++ ++.|.+||+  . +..+..+.....
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~  223 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE  223 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC
Confidence            489999999999999999999999999998887444489999999999998876 799999999  4 445556666678


Q ss_pred             eEEEEEcC----CCceEEEEcC-CCeEEEEEccCCeEEEEeccC----------C-CCeEEEEEcCCCC-EEEEEcCCCe
Q psy9936          93 VTRMEFLP----YHFLLATASE-EGYLSWLDTSIGKIVSDFSAK----------K-GKLSVMTQNPYNA-CICLGHRNGT  155 (315)
Q Consensus        93 v~~~~~~~----~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~----------~-~~v~~~~~~p~~~-~l~~~~~d~~  155 (315)
                      +..++|+|    +|+++++++. +++|.+||..+++++..+..+          . ..+..+.++|++. ++++...++.
T Consensus       224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~  303 (543)
T 1nir_A          224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK  303 (543)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence            89999999    9999999884 899999999999988887642          2 2688999999776 5566778999


Q ss_pred             EEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccCC---CceeEE-EccC-
Q psy9936         156 VTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTRT---PINNLA-FSQR-  227 (315)
Q Consensus       156 i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~-~s~~-  227 (315)
                      |.+||+.+.+.+.  .+. +...+.++.|+|+|++|++++ .+++|.+||+.++ +++..+....   +-..+. ++|+ 
T Consensus       304 i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~~~p~~  381 (543)
T 1nir_A          304 VLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANFVHPKY  381 (543)
T ss_dssp             EEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEEEETTT
T ss_pred             EEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCcccCCCCC
Confidence            9999999876554  443 566788999999999876654 5889999999998 8887776421   112233 4677 


Q ss_pred             CeEEEE---cCCEEEecCC-----------------------CceeecccccccccCC
Q psy9936         228 GLLATS---RGNIVEFLKP-----------------------PEINFEPRRKANKAGG  259 (315)
Q Consensus       228 g~~~~~---~~~~i~~~~~-----------------------~~~~~~~~~~~~~~~~  259 (315)
                      |.+.++   ++++|.+|+.                       ..+.++|+++.+.+++
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            554443   3688987743                       4588999999998876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=3.1e-26  Score=213.30  Aligned_cols=248  Identities=8%  Similarity=-0.010  Sum_probs=186.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCC----ceeEEEEeecCcEEEEEeC----------CeEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME----EVYDIKWLHLETMFAVAQK----------DWVY   75 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~----------~~i~   75 (315)
                      ...+.+++|+|||+++++ +.||.|++||+.+++....+.+..    .+.+++|+|||++|+++.+          +.++
T Consensus        16 ~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           16 KIHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            344678999999997766 689999999999998877776433    4899999999999988863          7899


Q ss_pred             EEeCCCCEEEEeecC----CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCe----------------
Q psy9936          76 IYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKL----------------  135 (315)
Q Consensus        76 i~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v----------------  135 (315)
                      +||+.+.....+...    ..+..++|||||+.|++++. +.|++||+.+++.......+...+                
T Consensus        95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            999976554444432    34888999999999999886 799999999887766555444333                


Q ss_pred             --EEEEEcCCCCEEEEEcCCC----------------------------------eEEEEcCCCCcceeEeecc------
Q psy9936         136 --SVMTQNPYNACICLGHRNG----------------------------------TVTMWSPTVQKPLASLLCH------  173 (315)
Q Consensus       136 --~~~~~~p~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~~~~~~~------  173 (315)
                        .+++|+|||+.|++++.++                                  .|.+||+.+++....+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              7899999999999886542                                  8999999988765666544      


Q ss_pred             cccEEEEEECCCCCEEEEeeC----CCcEEEEEccCCCCCeeEeccC-C-Cc----eeEEEccCCe--EEE-E-cCC---
Q psy9936         174 KAGIQSVAVNHTGTYMATSAG----DSQLRIWDVRNLEGPLNTFRTR-T-PI----NNLAFSQRGL--LAT-S-RGN---  236 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~-~-~v----~~~~~s~~g~--~~~-~-~~~---  236 (315)
                      ...+..++|||||++|++.+.    +..|++||+.++ ++...+..+ . .+    ..++|+|||.  +++ + .++   
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence            568899999999998877653    357999999987 665554332 2 23    3899999995  332 3 355   


Q ss_pred             ---EEEecC---------C---C--------ceeecccccccccCCc
Q psy9936         237 ---IVEFLK---------P---P--------EINFEPRRKANKAGGS  260 (315)
Q Consensus       237 ---~i~~~~---------~---~--------~~~~~~~~~~~~~~~~  260 (315)
                         .|..|+         +   +        .++|+|+++.++..+.
T Consensus       333 ~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~  379 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST  379 (723)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred             ceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEc
Confidence               466666         2   0        1579999998865443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=6.6e-26  Score=211.70  Aligned_cols=246  Identities=9%  Similarity=0.017  Sum_probs=188.4

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCc---eEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK---TLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~   88 (315)
                      .+.+++|||||++|++++. +.|++||+.++   .......+...+..++|+|||++|+.+.++.|++||+.+.....+.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            4788999999999998876 89999999988   5554444777899999999999999999999999999776655543


Q ss_pred             cC--Cc----------------eEEEEEcCCCceEEEEcCCC---------------------------------eEEEE
Q psy9936          89 VL--NK----------------VTRMEFLPYHFLLATASEEG---------------------------------YLSWL  117 (315)
Q Consensus        89 ~~--~~----------------v~~~~~~~~~~~l~~~~~d~---------------------------------~i~~~  117 (315)
                      ..  ..                +.+++|+|||++|++++.|+                                 .|.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            22  11                47899999999999987665                                 78899


Q ss_pred             EccC-CeEEEEec--cCCCCeEEEEEcCCCCEEEEEcC-----CCeEEEEcCCCCcceeEeecccc----cEEEEEECCC
Q psy9936         118 DTSI-GKIVSDFS--AKKGKLSVMTQNPYNACICLGHR-----NGTVTMWSPTVQKPLASLLCHKA----GIQSVAVNHT  185 (315)
Q Consensus       118 d~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~sp~  185 (315)
                      |+.+ ++......  .|...+..++| |||++|++++.     +..|.+||+.+++....+..+..    .+..++|+||
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            9988 77554432  36677899999 99998887653     56899999999987766665443    3468999999


Q ss_pred             CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeE-EEccCCe-E-EEEc-CC--EEEecCC---------------
Q psy9936         186 GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNL-AFSQRGL-L-ATSR-GN--IVEFLKP---------------  243 (315)
Q Consensus       186 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~-~~s~~g~-~-~~~~-~~--~i~~~~~---------------  243 (315)
                      |+++++++.|+.++||.+..... ...+..+. .+.++ .|+|+|. + +++. ++  .+++|..               
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~  426 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPG  426 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCS
T ss_pred             CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCC
Confidence            99999999999888888763214 55555544 57777 5999994 3 3333 33  6666643               


Q ss_pred             -CceeecccccccccCCc
Q psy9936         244 -PEINFEPRRKANKAGGS  260 (315)
Q Consensus       244 -~~~~~~~~~~~~~~~~~  260 (315)
                       ..++|+|+++.++....
T Consensus       427 ~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          427 MHSASFARNASVYVDSWS  444 (741)
T ss_dssp             EEEEEECTTSSEEEEEEE
T ss_pred             ceEEEECCCCCEEEEEec
Confidence             25789999988876543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=3.5e-24  Score=180.88  Aligned_cols=242  Identities=9%  Similarity=0.046  Sum_probs=177.5

Q ss_pred             EEEcCCCCE-EEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCE--EEEeec
Q psy9936          16 MNYTKNGRH-LLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIE--LHCLKV   89 (315)
Q Consensus        16 ~~~s~~~~~-l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~--~~~~~~   89 (315)
                      ..|.+++.+ +++.+.++.|.+||..+++....+. +...+ .++|+|++++++++.  ++.|++||+.+..  ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            346666665 6677788999999999999877766 44456 999999998666554  6799999995443  444555


Q ss_pred             CCceEE-EEEcCCCceEEEEcCCC---eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCe-EEEEcCCC
Q psy9936          90 LNKVTR-MEFLPYHFLLATASEEG---YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGT-VTMWSPTV  163 (315)
Q Consensus        90 ~~~v~~-~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~-i~i~d~~~  163 (315)
                      ...... ++|+|++++++++..++   .|.+||+.+++.+..+..+ ..+..++|+|+|++++++ ..++. |.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            544455 99999999998655553   8999999999888877654 457899999999865554 55577 99999886


Q ss_pred             Cccee----EeecccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCC---eeEeccCCCceeEEEccCCe-EEEE-
Q psy9936         164 QKPLA----SLLCHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGP---LNTFRTRTPINNLAFSQRGL-LATS-  233 (315)
Q Consensus       164 ~~~~~----~~~~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~-~~~~-  233 (315)
                      ...+.    ........+..++|+|+|++++++ ..++.|.+||+.++ +.   +..+..+..+..++|+|||. ++++ 
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTNNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECSSCCCCEEECTTSSEEEEEC
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCCCCCceEEECCCCCEEEEEE
Confidence            44331    111234567899999999966555 46889999999988 77   77777777789999999996 3333 


Q ss_pred             -cCCEEEecCC-------------------------CceeecccccccccCCc
Q psy9936         234 -RGNIVEFLKP-------------------------PEINFEPRRKANKAGGS  260 (315)
Q Consensus       234 -~~~~i~~~~~-------------------------~~~~~~~~~~~~~~~~~  260 (315)
                       .++.|..|++                         ..++|+|+++++..++.
T Consensus       240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred             cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence             3566777765                         12589999988755443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=3.6e-25  Score=205.69  Aligned_cols=246  Identities=13%  Similarity=0.118  Sum_probs=186.4

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC-----CEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG-----IELH   85 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~-----~~~~   85 (315)
                      ..|.+++|||| ..++.+. ++.|++||+.+++......+...+.+++|+|||+.|+.+.++.|++|++.+     ....
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            57999999999 6666553 589999999999887777677789999999999999998999999999965     4433


Q ss_pred             Eee-cC-Cc--------------eEEEEEcCCCceEEEEc---------------------------------CCCeEEE
Q psy9936          86 CLK-VL-NK--------------VTRMEFLPYHFLLATAS---------------------------------EEGYLSW  116 (315)
Q Consensus        86 ~~~-~~-~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~~i~~  116 (315)
                      .+. .. ..              +.++.|+|||++|++++                                 .+..|.+
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            322 22 22              47899999999999887                                 3467999


Q ss_pred             EEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcCCC-----eEEEEcCCCCcceeEee--cccc---cEEEEEECC
Q psy9936         117 LDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHRNG-----TVTMWSPTVQKPLASLL--CHKA---GIQSVAVNH  184 (315)
Q Consensus       117 ~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~--~~~~---~i~~~~~sp  184 (315)
                      ||+.+++......  .|...+..++|+|||+.|++++.++     .|.+||+.+++....+.  .+..   .+.+++|+|
T Consensus       240 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp  319 (706)
T 2z3z_A          240 YHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLP  319 (706)
T ss_dssp             EETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeec
Confidence            9999887654432  4566789999999999998877665     99999999884444332  2222   246789999


Q ss_pred             --CCCEEEEeeCCCcEEEEEcc-CCCCCeeEeccCC-Ccee-EEEccCCe--EEEEc-CC----EEEecCC---------
Q psy9936         185 --TGTYMATSAGDSQLRIWDVR-NLEGPLNTFRTRT-PINN-LAFSQRGL--LATSR-GN----IVEFLKP---------  243 (315)
Q Consensus       185 --~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-~v~~-~~~s~~g~--~~~~~-~~----~i~~~~~---------  243 (315)
                        ||+++++++.|+.++||++. ++ ..+..+..+. .+.+ ++|+|+|.  ++++. ++    .|..|+.         
T Consensus       320 ~~dg~~l~~~~~~g~~~l~~~~~~~-~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~  398 (706)
T 2z3z_A          320 GSNNQFIWQSRRDGWNHLYLYDTTG-RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT  398 (706)
T ss_dssp             TCSSEEEEEECTTSSCEEEEEETTS-CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC
T ss_pred             CCCCEEEEEEccCCccEEEEEECCC-CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc
Confidence              99999999999999999887 44 5666665554 4666 79999994  33333 33    5555543         


Q ss_pred             -----CceeecccccccccCC
Q psy9936         244 -----PEINFEPRRKANKAGG  259 (315)
Q Consensus       244 -----~~~~~~~~~~~~~~~~  259 (315)
                           ..++|+|++++++...
T Consensus       399 ~~~~~~~~~~spdg~~l~~~~  419 (706)
T 2z3z_A          399 PESGMHRTQLSPDGSAIIDIF  419 (706)
T ss_dssp             CSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEe
Confidence                 4578999999887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.3e-23  Score=177.44  Aligned_cols=231  Identities=6%  Similarity=0.026  Sum_probs=168.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC-CCeEEEEEccCceE-EEEecC-CCceeEEEEeecCcEEEEEeCC----eEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK-RGHVAAFDWVRKTL-ACEMNV-MEEVYDIKWLHLETMFAVAQKD----WVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~~----~i~i~~~~~~   82 (315)
                      ...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+.. ..+..+++|+|++++++++.++    .|.+||+...
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence            4455 9999999997665554 88999999999887 666654 4444449999999988865543    8999999654


Q ss_pred             -EEEEeecCCceEEEEEcCCCceEEEE-cCCCe-EEEEEccCCeEE----EEeccCCCCeEEEEEcCCCCEEE-EEcCCC
Q psy9936          83 -ELHCLKVLNKVTRMEFLPYHFLLATA-SEEGY-LSWLDTSIGKIV----SDFSAKKGKLSVMTQNPYNACIC-LGHRNG  154 (315)
Q Consensus        83 -~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~~~d~~~~~~~----~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~  154 (315)
                       .+..+.....+.+++|+|+|++++++ ..++. |.+|++.....+    .........+..++|+|+|++++ ++..++
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  198 (331)
T 3u4y_A          119 KFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN  198 (331)
T ss_dssp             EEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence             44555666778999999999865555 55577 999998753322    11113345588999999999655 455689


Q ss_pred             eEEEEcCCCCcc---eeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCC--eeEeccC----C----Cce
Q psy9936         155 TVTMWSPTVQKP---LASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGP--LNTFRTR----T----PIN  220 (315)
Q Consensus       155 ~i~i~d~~~~~~---~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~--~~~~~~~----~----~v~  220 (315)
                      .|.+||+.+++.   +..+.. ...+..++|+|+|++|++++ .++.|.+||+.++ +.  +..+...    .    ...
T Consensus       199 ~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
T 3u4y_A          199 SIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG-TLSFVKSFGHGLLIDPRPLFGAN  276 (331)
T ss_dssp             EEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT-EEEEEEEEECCCCCCCGGGTTCC
T ss_pred             eEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC-ceeeecccccccccCCCCccccc
Confidence            999999999988   777763 46678999999999776654 5778999999987 54  3333222    1    135


Q ss_pred             eEEEccCCe--EEEEc-CCEEEecCC
Q psy9936         221 NLAFSQRGL--LATSR-GNIVEFLKP  243 (315)
Q Consensus       221 ~~~~s~~g~--~~~~~-~~~i~~~~~  243 (315)
                      .++|+|||.  ++++. ++.|.+|+.
T Consensus       277 ~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          277 QMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ceEECCCCCEEEEecCCCCcEEEEEe
Confidence            689999994  34444 569999987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=2e-23  Score=177.66  Aligned_cols=217  Identities=15%  Similarity=0.119  Sum_probs=174.6

Q ss_pred             CCcEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceEEEEecCCC----------ceeEEEEeecCcEEEEEe---CCeEE
Q psy9936          10 QFGIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTLACEMNVME----------EVYDIKWLHLETMFAVAQ---KDWVY   75 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~---~~~i~   75 (315)
                      ...+.+++|+|+|++++ +...++.|.+||..+++....+....          .+.++.|+|+++.++++.   ++.|.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            44577899999999655 45567899999999999877776322          268899999998777664   67899


Q ss_pred             EEeCCCCE-EEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc----CCCCeEEEEEcCCCCEEEE
Q psy9936          76 IYDNQGIE-LHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA----KKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        76 i~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~  149 (315)
                      +||..+.. ...+. +...+.+++|+|+++.+++++.++.|.+||+.+++....+..    +...+..++|+|+|+++++
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence            99996544 44454 345588999999999999999999999999999988877654    4456888999999997766


Q ss_pred             EcC-CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccCCCceeEEEccC
Q psy9936         150 GHR-NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQR  227 (315)
Q Consensus       150 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  227 (315)
                      ++. ++.|.+||+.+++.+..+....  ...++|+|+|+++++++ .++.|.+||+.++ +.+..+.....+.+++|+|+
T Consensus       248 ~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~d  324 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTPTHPNSLALSAD  324 (353)
T ss_dssp             EESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECCSEEEEEEECTT
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecCCCCCeEEEcCC
Confidence            654 5899999999998887776433  25799999999766555 6899999999998 88888877777899999999


Q ss_pred             Ce
Q psy9936         228 GL  229 (315)
Q Consensus       228 g~  229 (315)
                      |.
T Consensus       325 g~  326 (353)
T 3vgz_A          325 GK  326 (353)
T ss_dssp             SC
T ss_pred             CC
Confidence            95

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=1e-24  Score=198.30  Aligned_cols=244  Identities=13%  Similarity=0.033  Sum_probs=183.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC-CCeEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEeC----C--eEEEEeC--
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK-RGHVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQK----D--WVYIYDN--   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----~--~i~i~~~--   79 (315)
                      ..+|++++|+|||++||+++. +|++.||++++++......+. ..+..+.|+|| ++++++..    .  .|+.++.  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            467999999999999998876 999999999888776666555 58999999999 77776652    3  3444566  


Q ss_pred             CCCEEEEeecCCceEEEEEcCCCce-EEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC----C
Q psy9936          80 QGIELHCLKVLNKVTRMEFLPYHFL-LATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN----G  154 (315)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~  154 (315)
                      .+... .+.....+...+|+|+++. +++.+.++.+.+||+.+++.......+ .  .+++|+|||++|++++.+    +
T Consensus       100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCe
Confidence            55544 4444455667788988753 333334445569999988766554433 2  789999999999988776    7


Q ss_pred             eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC--cEEEEEccCCCCCeeEeccCC-CceeEE--------
Q psy9936         155 TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS--QLRIWDVRNLEGPLNTFRTRT-PINNLA--------  223 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~-~v~~~~--------  223 (315)
                      .|.+||+.+++.. .+..|...+..++|||||++|+++..++  .|++||+.++ .+. .+..+. .+..++        
T Consensus       176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  252 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-SVE-DLELPSKDFSSYRPTAITWLG  252 (582)
T ss_dssp             EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-CEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred             EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-cEE-EccCCCcChhhhhhcccccee
Confidence            8999999988754 6677888999999999999999888888  8999999987 555 555443 466667        


Q ss_pred             EccCCeEE--EEcCCEEEecCC-----------CceeecccccccccCCcch
Q psy9936         224 FSQRGLLA--TSRGNIVEFLKP-----------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       224 ~s~~g~~~--~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~  262 (315)
                      |+|||.++  ++.++.+++|.+           ..++|+ +++.+++++.+.
T Consensus       253 ~spdg~~~~~~~~~g~~~l~~~g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          253 YLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             ECTTSCEEEEEEETTEEEEEETTEEECCCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             EcCCCcEEEEEEcCCcEEEEEECCeeccCCCceEEEEec-CCEEEEEEcCCC
Confidence            99999543  445889998864           356788 888887766554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.1e-23  Score=177.87  Aligned_cols=215  Identities=9%  Similarity=0.002  Sum_probs=165.6

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCCC---ceeEEEEeecCcEEEEEe--CCeEEEEeCCC-CEEEEeecCC-----
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVME---EVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-IELHCLKVLN-----   91 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~~~~~~~~~~-----   91 (315)
                      +++++++.++.|.+||+.+++....+....   .+..++|+|+++.++++.  ++.|.+||+.+ ..+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            478889999999999999999888877555   688999999997665543  67999999954 4444444332     


Q ss_pred             -ceEEEEEcCCCceEEEEc------------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          92 -KVTRMEFLPYHFLLATAS------------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        92 -~v~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                       .+.+++|+|+|+++++++            .++.|.+||+.+++.+..+.. ...+..++|+|+|++|+++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence             677899999999888886            579999999999888777764 3457789999999988887  578999


Q ss_pred             EcCCCCcceeEeecc-----------------------------------------------------------------
Q psy9936         159 WSPTVQKPLASLLCH-----------------------------------------------------------------  173 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~-----------------------------------------------------------------  173 (315)
                      ||+.+++.+..+..+                                                                 
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            999877655443321                                                                 


Q ss_pred             -cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEcCCEEEecCC
Q psy9936         174 -KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       174 -~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~i~~~~~  243 (315)
                       ...+.+++|+|+|++++++  ++.|.+||+.++ +.+..+..+..+.+++|+|+|.  ++++.++.|.+|++
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence             1234468888888888877  678888888887 7777776666778888888884  44445788888876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=1.1e-23  Score=178.77  Aligned_cols=223  Identities=9%  Similarity=0.005  Sum_probs=172.3

Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCC--ceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEE-EEeec
Q psy9936          15 RMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME--EVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIEL-HCLKV   89 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~-~~~~~   89 (315)
                      ++++++++.++++++.++.|++||+.+++....+....  .+..++|+|+++.++++.  ++.|.+||+.+... ..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            46788899999999999999999999999888877544  688999999998665553  68999999965443 33432


Q ss_pred             CC-------ceEEEEEcCCCceEEEEcCC------------CeEEEEEccCCe---EEEEeccCCCCeEEEEEcCCCCEE
Q psy9936          90 LN-------KVTRMEFLPYHFLLATASEE------------GYLSWLDTSIGK---IVSDFSAKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        90 ~~-------~v~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l  147 (315)
                      ..       .+..++|+|+|+++++++.+            +.|.+||+.+++   .+..+. +...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence            22       27889999999999988865            899999998743   333333 334588899999999 5


Q ss_pred             EEEcCCCeEEEEcCCCCcceeEeeccc-----------------------------------------------------
Q psy9936         148 CLGHRNGTVTMWSPTVQKPLASLLCHK-----------------------------------------------------  174 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------------------------------------------  174 (315)
                      ++++.  .|.+||+.+++.+..+..+.                                                     
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            55544  39999999887666554221                                                     


Q ss_pred             ---------------ccEEEEEECC-CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEcCC
Q psy9936         175 ---------------AGIQSVAVNH-TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSRGN  236 (315)
Q Consensus       175 ---------------~~i~~~~~sp-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~  236 (315)
                                     ..+..++|+| +|++++++  ++.|.+||+.++ +.+..+..+..+.+++|+|+|.  ++++.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANLDHTYYCVAFDKKGDKLYLGGTFN  316 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcCCCCccceEECCCCCEEEEecCCC
Confidence                           1345678889 99999888  889999999998 7777777666788999999983  4445588


Q ss_pred             EEEecCCC
Q psy9936         237 IVEFLKPP  244 (315)
Q Consensus       237 ~i~~~~~~  244 (315)
                      .|.+|++.
T Consensus       317 ~v~v~d~~  324 (349)
T 1jmx_B          317 DLAVFNPD  324 (349)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEecc
Confidence            99999973

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=6.9e-24  Score=204.94  Aligned_cols=247  Identities=11%  Similarity=0.071  Sum_probs=195.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-ceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-KTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~   88 (315)
                      ...+.++.|+++ .++++++.++.+.||.+.. +.....+.....+...+|+|||+.|+.+.++.|++|++.+..+..+.
T Consensus       203 ~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~  281 (1045)
T 1k32_A          203 STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIE  281 (1045)
T ss_dssp             SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECC
T ss_pred             CCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeec
Confidence            678899999998 6667777888888887653 33334444334567789999999999999999999999665555433


Q ss_pred             c------------CCceEEEEEc-CCCceEEEEcCCCeEEEEEccCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEcCCC
Q psy9936          89 V------------LNKVTRMEFL-PYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG-KLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        89 ~------------~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      .            ...+.+++|+ |+|+.|++++ ++.+.+|++..+... .+..|.. .+..++|+ +|+.|++++.++
T Consensus       282 ~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~  358 (1045)
T 1k32_A          282 IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREG  358 (1045)
T ss_dssp             CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTE
T ss_pred             cCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCC
Confidence            2            2268899999 9999998887 789999999877654 4666777 89999999 999999988888


Q ss_pred             eEE-EEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeEEE
Q psy9936         155 TVT-MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLAT  232 (315)
Q Consensus       155 ~i~-i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~~~  232 (315)
                      .+. +||+.+++.. .+.+|...+..++|+|||++|++++.++.|++||+.++ +.......+. .+.+++|||||.+++
T Consensus       359 ~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          359 DFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTISDNSRFIA  436 (1045)
T ss_dssp             EEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             ceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEECCCCCeEE
Confidence            899 9999877543 44478889999999999999999999999999999988 6666664554 589999999996443


Q ss_pred             E--cC----------CEEEecCC---------------CceeecccccccccCCcch
Q psy9936         233 S--RG----------NIVEFLKP---------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       233 ~--~~----------~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      .  .+          +.|++|++               ..+.|+|+|+.++.++...
T Consensus       437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          437 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             EEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence            2  22          37888876               3578999999888776543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=3.6e-24  Score=199.43  Aligned_cols=246  Identities=9%  Similarity=-0.018  Sum_probs=174.8

Q ss_pred             cEEEEEEcCCCCEEEEEcCC---------CeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEEeCCeEEEEeC
Q psy9936          12 GIYRMNYTKNGRHLLLGGKR---------GHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVAQKDWVYIYDN   79 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~d---------g~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~   79 (315)
                      .|.+++|||||++|++++.+         +.|++||+.+++......   +...+..++|+|||+.|+.++++.|++|++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~  141 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence            48999999999999998764         789999999887632222   233488999999999999999999999999


Q ss_pred             CCCEEEEeec--CCc------------------eEEEEEcCCCceEEEEcCCC---------------------------
Q psy9936          80 QGIELHCLKV--LNK------------------VTRMEFLPYHFLLATASEEG---------------------------  112 (315)
Q Consensus        80 ~~~~~~~~~~--~~~------------------v~~~~~~~~~~~l~~~~~d~---------------------------  112 (315)
                      .+.....+..  ...                  +.+++|+|||+.|++++.++                           
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence            6544333322  222                  37899999999999887543                           


Q ss_pred             -------eEEEEEccCCeEEEEeccC------CCCeEEEEEcCCCCEEEEEcC----CCeEEEEcCCCCcceeEeec-cc
Q psy9936         113 -------YLSWLDTSIGKIVSDFSAK------KGKLSVMTQNPYNACICLGHR----NGTVTMWSPTVQKPLASLLC-HK  174 (315)
Q Consensus       113 -------~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~p~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~-~~  174 (315)
                             .|++||+.+++....+..+      ...+..++|+|||+++++...    +..|.+||+.+++....+.. +.
T Consensus       222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~  301 (723)
T 1xfd_A          222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE  301 (723)
T ss_dssp             TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC
Confidence                   7999999988765566544      556899999999998876643    35899999999887665543 33


Q ss_pred             ccEE----EEEECCCCCEEEE--eeCCC------cEEEEE-ccCCCC--CeeEecc-CCCcee-EEEccCCeE--EEEcC
Q psy9936         175 AGIQ----SVAVNHTGTYMAT--SAGDS------QLRIWD-VRNLEG--PLNTFRT-RTPINN-LAFSQRGLL--ATSRG  235 (315)
Q Consensus       175 ~~i~----~~~~sp~g~~l~~--~~~d~------~i~iwd-~~~~~~--~~~~~~~-~~~v~~-~~~s~~g~~--~~~~~  235 (315)
                      ..+.    .++|+|||++|+.  +..++      .|.+|| ..++ .  +...+.. +..+.. ++|+|||..  +++.+
T Consensus       302 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS-SNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS-SSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC-CccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence            4443    7899999997765  45666      466777 3343 3  1444433 334554 699999953  33333


Q ss_pred             ---CEEEecCC---------------------CceeecccccccccC
Q psy9936         236 ---NIVEFLKP---------------------PEINFEPRRKANKAG  258 (315)
Q Consensus       236 ---~~i~~~~~---------------------~~~~~~~~~~~~~~~  258 (315)
                         +.+++|..                     ..++|+|+++.++..
T Consensus       381 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence               55555532                     247789999877653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=4.3e-23  Score=174.65  Aligned_cols=241  Identities=12%  Similarity=0.118  Sum_probs=170.6

Q ss_pred             EEEEEcCCCeEEEEEcc-Cc--eEEEEecCCCceeEEEEeecCcEEEEEe-C-CeEEEEeCC--CCEEE---EeecCCce
Q psy9936          24 HLLLGGKRGHVAAFDWV-RK--TLACEMNVMEEVYDIKWLHLETMFAVAQ-K-DWVYIYDNQ--GIELH---CLKVLNKV   93 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~i~i~~~~--~~~~~---~~~~~~~v   93 (315)
                      .+++++.++.|++|++. ++  +....+.+...+.+++|+|++++|+++. + +.|.+|+++  +....   .+.....+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   86 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence            34444779999999985 33  3455566778899999999999887776 3 899999985  33332   33444578


Q ss_pred             EEEEEcCCCceEEEEc-CCCeEEEEEcc---CCeEEEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCC-Ccce
Q psy9936          94 TRMEFLPYHFLLATAS-EEGYLSWLDTS---IGKIVSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVTMWSPTV-QKPL  167 (315)
Q Consensus        94 ~~~~~~~~~~~l~~~~-~d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~-~~~~  167 (315)
                      ..++|+|+++++++++ .++.|.+||+.   ..+....+..+ ..+.+++|+|+|+++++++ .++.|.+||+.+ ++..
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            9999999999776665 48899999994   34455555443 4588899999999888776 899999999987 5432


Q ss_pred             e----Eeec-ccccEEEEEECCCCCEEEEee-CCCcEEEEEccC--CCCC--eeEec---cC----CCceeEEEccCCe-
Q psy9936         168 A----SLLC-HKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRN--LEGP--LNTFR---TR----TPINNLAFSQRGL-  229 (315)
Q Consensus       168 ~----~~~~-~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~--~~~~--~~~~~---~~----~~v~~~~~s~~g~-  229 (315)
                      .    .+.. ....+..++|+|+|++|++++ .++.|.+|++..  + ..  ...+.   ..    ..+..++|+|+|. 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG-NIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-CCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-cEEEEeeccccCccccccCCccceEECCCCCE
Confidence            2    2222 335788999999999776555 788999999954  3 22  22222   11    1356799999994 


Q ss_pred             EE-EE-cCCEEEecCC-------------------CceeecccccccccCC-cchhhhh
Q psy9936         230 LA-TS-RGNIVEFLKP-------------------PEINFEPRRKANKAGG-SVQRAKV  266 (315)
Q Consensus       230 ~~-~~-~~~~i~~~~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~  266 (315)
                      ++ +. .++.|.+|++                   ..++|+|+++.++.++ .++.+..
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  303 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEE
Confidence            33 33 4788887754                   5678999998777666 3444333

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=4.5e-24  Score=186.89  Aligned_cols=194  Identities=13%  Similarity=0.133  Sum_probs=152.7

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc-----------e-----EEEEecCCCceeEEEEeecCcEEEE----Ee
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK-----------T-----LACEMNVMEEVYDIKWLHLETMFAV----AQ   70 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-----------~-----~~~~~~~~~~v~~~~~~~~~~~l~~----~~   70 (315)
                      ..+..+++++++.++++++.++ +++|+....           .     ....+.+...|.+++|+|++++|++    ++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3578899999999999998887 888875321           1     1123345667999999999999984    43


Q ss_pred             -CCeEEEEeCCCC---------E---EEEe-ecCCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCe
Q psy9936          71 -KDWVYIYDNQGI---------E---LHCL-KVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKL  135 (315)
Q Consensus        71 -~~~i~i~~~~~~---------~---~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v  135 (315)
                       |+.|++||+...         .   +..+ .|...|.+++|+|+ +.+|++++.||+|++||++++..+.....|...+
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence             789999997321         1   2222 25688999999998 7899999999999999999987776667788899


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc-------cccEEEEEECCCCCEEEEe-eCCC------cEEEE
Q psy9936         136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH-------KAGIQSVAVNHTGTYMATS-AGDS------QLRIW  201 (315)
Q Consensus       136 ~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~sp~g~~l~~~-~~d~------~i~iw  201 (315)
                      .+++|+|+|++|++|+.||.|++||++ ++....+..|       ...+.+++|++++.++++. +.+|      .+++|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999998 5555555433       2389999999998877553 3443      38999


Q ss_pred             EccCC
Q psy9936         202 DVRNL  206 (315)
Q Consensus       202 d~~~~  206 (315)
                      ++...
T Consensus       275 ~l~~~  279 (434)
T 2oit_A          275 LLPKK  279 (434)
T ss_dssp             ECCCT
T ss_pred             EeccC
Confidence            99864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.3e-23  Score=183.91  Aligned_cols=192  Identities=10%  Similarity=0.106  Sum_probs=150.6

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC-----------CEE------EEeecCCceE
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG-----------IEL------HCLKVLNKVT   94 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~-----------~~~------~~~~~~~~v~   94 (315)
                      +.+++|+....     + ....++.+++++++.++++++...+.+|+...           ..+      ..+.+...|.
T Consensus        23 ~~vri~~~~~~-----~-~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   96 (434)
T 2oit_A           23 KKVRIFDSPEE-----L-PKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH   96 (434)
T ss_dssp             CEEECSCCCSS-----C-CCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred             eeEEecCCccc-----c-CCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence            45777764211     1 23458899999999999888855588886410           111      1233446799


Q ss_pred             EEEEcCCCceEE----EEcCCCeEEEEEccCC--------e---EEEEeccCCCCeEEEEEcCC-CCEEEEEcCCCeEEE
Q psy9936          95 RMEFLPYHFLLA----TASEEGYLSWLDTSIG--------K---IVSDFSAKKGKLSVMTQNPY-NACICLGHRNGTVTM  158 (315)
Q Consensus        95 ~~~~~~~~~~l~----~~~~d~~i~~~d~~~~--------~---~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~i  158 (315)
                      +++|+|++++|+    +++.|+.|++||+.++        +   ....+.+|...|.+++|+|+ +.+|++++.||+|++
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i  176 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV  176 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence            999999999999    7888999999998754        2   24456678999999999998 789999999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--------CCceeEEEccCCeE
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--------TPINNLAFSQRGLL  230 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~s~~g~~  230 (315)
                      ||++++..+....+|...|.+++|+|+|++|++|+.||.|++||++ + .....+..+        ..+.+++|++++.+
T Consensus       177 wD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          177 LQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             EEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             EEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceE
Confidence            9999987766667789999999999999999999999999999998 4 444444322        15899999999976


Q ss_pred             E
Q psy9936         231 A  231 (315)
Q Consensus       231 ~  231 (315)
                      +
T Consensus       255 l  255 (434)
T 2oit_A          255 A  255 (434)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=7.2e-22  Score=167.97  Aligned_cols=232  Identities=11%  Similarity=0.076  Sum_probs=162.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC---CCeEEEEEccCceE--EEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK---RGHVAAFDWVRKTL--ACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQ-   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~---dg~i~v~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~-   80 (315)
                      ...+..++|+|||+ |++++.   ++.|++|++.+++.  +..+. +...+..++|+|+|++|+++.  ++.|.+|++. 
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            45567799999999 554443   68999999987764  33322 566789999999999887776  6899999984 


Q ss_pred             CCEEE---EeecC----------CceEEEEEcCCCceEEEEcCCCeEEEEEcc-CCeEE--EEeccC-CCCeEEEEEcCC
Q psy9936          81 GIELH---CLKVL----------NKVTRMEFLPYHFLLATASEEGYLSWLDTS-IGKIV--SDFSAK-KGKLSVMTQNPY  143 (315)
Q Consensus        81 ~~~~~---~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~--~~~~~~-~~~v~~~~~~p~  143 (315)
                      .....   .+...          ..+.+++|+|+|+++++...++.|.+|++. +++..  ..+..+ ...+..++|+|+
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd  197 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD  197 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC
Confidence            22222   22221          247889999999977777778899999998 55433  222222 235788999999


Q ss_pred             CCEEEE-EcCCCeEEEEcCCC--Ccc--eeEeeccc------ccEEEEEECCCCCEEE-EeeCCCcEEEEEccCCC--CC
Q psy9936         144 NACICL-GHRNGTVTMWSPTV--QKP--LASLLCHK------AGIQSVAVNHTGTYMA-TSAGDSQLRIWDVRNLE--GP  209 (315)
Q Consensus       144 ~~~l~~-~~~d~~i~i~d~~~--~~~--~~~~~~~~------~~i~~~~~sp~g~~l~-~~~~d~~i~iwd~~~~~--~~  209 (315)
                      |+++++ +..++.|.+|+++.  ++.  +..+....      ..+..++|+|||++|+ ++..++.|.+|++....  ..
T Consensus       198 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~  277 (347)
T 3hfq_A          198 GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTL  277 (347)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEE
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEE
Confidence            996655 56788999999874  432  22332222      4588999999999874 55668999999997321  33


Q ss_pred             eeEeccCC-CceeEEEccCCe-E-EEEc-CCEEEecC
Q psy9936         210 LNTFRTRT-PINNLAFSQRGL-L-ATSR-GNIVEFLK  242 (315)
Q Consensus       210 ~~~~~~~~-~v~~~~~s~~g~-~-~~~~-~~~i~~~~  242 (315)
                      +..+..+. .+..++|+|||. + +++. ++.+.+|+
T Consensus       278 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          278 IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence            44444433 588999999995 3 3333 47899884

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=4.7e-23  Score=199.14  Aligned_cols=226  Identities=14%  Similarity=0.160  Sum_probs=181.2

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC------------CCceeEEEEe-ecCcEEEEEeCCeEEEEe
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV------------MEEVYDIKWL-HLETMFAVAQKDWVYIYD   78 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~------------~~~v~~~~~~-~~~~~l~~~~~~~i~i~~   78 (315)
                      .+...+|+|||++|+++ .++.|++|++...... .+..            ...+.+++|+ |||+.|+++.++.|++|+
T Consensus       246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~  323 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQD  323 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEEC
T ss_pred             CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEc
Confidence            45677999999999887 4889999998555443 4432            2268999999 999999998899999999


Q ss_pred             CCCCEEEEee-cCC-ceEEEEEcCCCceEEEEcCCCeEE-EEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCe
Q psy9936          79 NQGIELHCLK-VLN-KVTRMEFLPYHFLLATASEEGYLS-WLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGT  155 (315)
Q Consensus        79 ~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  155 (315)
                      ..+.....+. +.. .+..++|+ +|+.|++++.++.+. +||+.+++.. .+..|...+..++|+|||++|++++.++.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~  401 (1045)
T 1k32_A          324 VSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE  401 (1045)
T ss_dssp             TTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe
Confidence            9765554443 445 78999999 999999988888888 9999877654 34477788999999999999999999999


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC----------cEEEEEccCCCCCeeEeccCC-CceeEEE
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS----------QLRIWDVRNLEGPLNTFRTRT-PINNLAF  224 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~----------~i~iwd~~~~~~~~~~~~~~~-~v~~~~~  224 (315)
                      |++||+.+++....+.+|...+.+++|||||++|++++.++          .|++||+.++ . +..+..+. .+..++|
T Consensus       402 v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~~~l~~~~~~~~~~~~  479 (1045)
T 1k32_A          402 IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAF  479 (1045)
T ss_dssp             EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEE
T ss_pred             EEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-c-EEEeeCCCcccCCceE
Confidence            99999999987777768889999999999999999887654          8999999987 5 44554444 5788999


Q ss_pred             ccCCe--EEEEcCCEEEecCC
Q psy9936         225 SQRGL--LATSRGNIVEFLKP  243 (315)
Q Consensus       225 s~~g~--~~~~~~~~i~~~~~  243 (315)
                      +|||.  ++++.++....|+.
T Consensus       480 spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          480 DADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             CTTSCEEEEEESCCCCCEECS
T ss_pred             cCCCCEEEEEecccCCcCcch
Confidence            99995  34445555555543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=4.8e-22  Score=167.80  Aligned_cols=200  Identities=13%  Similarity=0.089  Sum_probs=160.4

Q ss_pred             cEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCCC------ceeEEEEeecCcEEEEEe-------------C
Q psy9936          12 GIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVME------EVYDIKWLHLETMFAVAQ-------------K   71 (315)
Q Consensus        12 ~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-------------~   71 (315)
                      .+.+++|+|+|+++ +++..++.|.+||+.+++....+....      .+..++|+|++++++++.             +
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            58899999999866 455667899999999998877766433      678899999998888773             6


Q ss_pred             CeEEEEeCCCCE-EEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC------------------
Q psy9936          72 DWVYIYDNQGIE-LHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK------------------  132 (315)
Q Consensus        72 ~~i~i~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------------  132 (315)
                      +.|.+||+.+.. ...+.....+.+++|+|++++|+++  ++.|.+||+.+++....+..+.                  
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeec
Confidence            899999996544 4445555678889999999988887  5789999998887665443221                  


Q ss_pred             ------------------------------------------------CCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936         133 ------------------------------------------------GKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus       133 ------------------------------------------------~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                                                                      ..+.+++|+|+|++++++  ++.|.+||+.++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~  270 (337)
T 1pby_B          193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN  270 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred             cCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence                                                            124468999999999888  789999999999


Q ss_pred             cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                      +.+..+.. ...+.+++|+|+|++|++++.++.|.+||+.++ +.+..+..+.
T Consensus       271 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~~~  321 (337)
T 1pby_B          271 ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDLPG  321 (337)
T ss_dssp             EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC-CEEEEEECGG
T ss_pred             cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEEcCC
Confidence            88777763 456789999999999999999999999999998 7777776553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.8e-22  Score=187.46  Aligned_cols=231  Identities=13%  Similarity=0.104  Sum_probs=171.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-----ceEEEEec-CCCc--------------eeEEEEeecCcEEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-----KTLACEMN-VMEE--------------VYDIKWLHLETMFAVA   69 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-----~~~~~~~~-~~~~--------------v~~~~~~~~~~~l~~~   69 (315)
                      ...+.+++|||||++|+++ .++.|++|++.+     ++...... +...              +.++.|+|||++|+++
T Consensus       120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~  198 (706)
T 2z3z_A          120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY  198 (706)
T ss_dssp             TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred             cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence            4567889999999999985 678999999998     77655444 2222              4889999999999887


Q ss_pred             e----------------------------------CCeEEEEeCCCCEEEEee----cCCceEEEEEcCCCceEEEEcCC
Q psy9936          70 Q----------------------------------KDWVYIYDNQGIELHCLK----VLNKVTRMEFLPYHFLLATASEE  111 (315)
Q Consensus        70 ~----------------------------------~~~i~i~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d  111 (315)
                      +                                  +..|++||+.+.....+.    +...+.+++|+|+|+.|++++.+
T Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  278 (706)
T 2z3z_A          199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN  278 (706)
T ss_dssp             EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred             EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence            5                                  257999999776654433    33678999999999999988766


Q ss_pred             C-----eEEEEEccCCeEEEEec--cCCC---CeEEEEEcC--CCCEEEEEcCCCeEEEEcCC-CCcceeEeecccccEE
Q psy9936         112 G-----YLSWLDTSIGKIVSDFS--AKKG---KLSVMTQNP--YNACICLGHRNGTVTMWSPT-VQKPLASLLCHKAGIQ  178 (315)
Q Consensus       112 ~-----~i~~~d~~~~~~~~~~~--~~~~---~v~~~~~~p--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~  178 (315)
                      +     .|.+||+.+++....+.  .+..   .+..++|+|  +|+++++++.++.+++|+++ ++..+..+..+...+.
T Consensus       279 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~  358 (706)
T 2z3z_A          279 RAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT  358 (706)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred             CCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence            5     89999999883333322  2222   235689999  99999999999999999876 5666777777777787


Q ss_pred             E-EEECCCCCEEEEeeCC-C----cEEEEEccCCCCCeeEeccCCCceeEEEccCCeEE-EE-cC----CEEEecCC
Q psy9936         179 S-VAVNHTGTYMATSAGD-S----QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLA-TS-RG----NIVEFLKP  243 (315)
Q Consensus       179 ~-~~~sp~g~~l~~~~~d-~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~-~~-~~----~~i~~~~~  243 (315)
                      . ++|+|+|+.|+.++.+ +    .|..||+.++ . ...+.....+.+++|+|||.++ .+ .+    +.+.+|+.
T Consensus       359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-K-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-C-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-C-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            6 7999999988766544 3    5666676665 3 4445445568999999999533 22 22    45777765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=4.7e-23  Score=191.86  Aligned_cols=225  Identities=12%  Similarity=0.065  Sum_probs=163.9

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCC----ceeEEEEeecCcEEEEEeC----------CeEEEEeC
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME----EVYDIKWLHLETMFAVAQK----------DWVYIYDN   79 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~----------~~i~i~~~   79 (315)
                      .+++|+|||+++++ +.++.|++||+.+++....+.+..    .+.+++|+|||++|+.+++          +.|++||+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            37899999965555 469999999999999877776432    3899999999999987753          79999999


Q ss_pred             CCCEE---EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe-ccCCCCe-----------------EEE
Q psy9936          80 QGIEL---HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF-SAKKGKL-----------------SVM  138 (315)
Q Consensus        80 ~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v-----------------~~~  138 (315)
                      .+...   ..+  ...+..++|||||+.|+++. ++.|++||+.+++..... .++...+                 .++
T Consensus        98 ~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           98 SNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTTEECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCCccccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            77665   333  25688999999999999886 779999999887765432 2222222                 479


Q ss_pred             EEcCCCCEEEEEcCCC----------------------------------eEEEEcCCCCcce--------eEeeccccc
Q psy9936         139 TQNPYNACICLGHRNG----------------------------------TVTMWSPTVQKPL--------ASLLCHKAG  176 (315)
Q Consensus       139 ~~~p~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~--------~~~~~~~~~  176 (315)
                      +|+|||++|++++.|.                                  .|.+||+.+++..        ..+.+|...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999887542                                  7899999987643        123357788


Q ss_pred             EEEEEECCCCCEEEEeeCC----CcEEEEE----ccCCCCCeeEe----ccCC-Cce-----eEEEccCCe--EEE-E-c
Q psy9936         177 IQSVAVNHTGTYMATSAGD----SQLRIWD----VRNLEGPLNTF----RTRT-PIN-----NLAFSQRGL--LAT-S-R  234 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~d----~~i~iwd----~~~~~~~~~~~----~~~~-~v~-----~~~~s~~g~--~~~-~-~  234 (315)
                      +..++||||++++++....    ..|.+||    +.++ ++...+    ..+. .+.     .+.|+|||.  +++ + .
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            9999999998877775433    2488899    7766 544444    2333 355     899999994  332 2 3


Q ss_pred             CC--EEEecCC
Q psy9936         235 GN--IVEFLKP  243 (315)
Q Consensus       235 ~~--~i~~~~~  243 (315)
                      ++  .|..|++
T Consensus       334 ~g~~~l~~~~~  344 (719)
T 1z68_A          334 DGYKHIHYIKD  344 (719)
T ss_dssp             TSCEEEEEESS
T ss_pred             CCceEEEEEEC
Confidence            34  4555554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.1e-20  Score=161.66  Aligned_cols=230  Identities=12%  Similarity=0.091  Sum_probs=157.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC----CeEEEEEccC--ceEEE--Eec-CCCceeEEEEeecCcEEEEEe--CCeEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR----GHVAAFDWVR--KTLAC--EMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d----g~i~v~~~~~--~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~   78 (315)
                      ...+..++|+|||++|++++.+    +.|.+|++..  ++...  ... +......+++  ++++|+++.  ++.|.+|+
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence            3455678999999999988775    7999998765  54332  232 3445667777  787777765  78999999


Q ss_pred             CCC-CEEE----Eeec-----------CCceEEEEEcCCCceEEEEc-CCCeEEEEEccCCe-------E------EEEe
Q psy9936          79 NQG-IELH----CLKV-----------LNKVTRMEFLPYHFLLATAS-EEGYLSWLDTSIGK-------I------VSDF  128 (315)
Q Consensus        79 ~~~-~~~~----~~~~-----------~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~-------~------~~~~  128 (315)
                      +.. ..+.    ...+           ...+.+++|+|+|+++++++ .++.|.+|++....       .      ....
T Consensus       127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~  206 (361)
T 3scy_A          127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK  206 (361)
T ss_dssp             BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred             eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence            842 2111    1111           12357899999998665554 57899999987533       1      1112


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCCCcc--eeEee---cccccEEEEEECCCCCEEEEeeCC--CcEEE
Q psy9936         129 SAKKGKLSVMTQNPYNACICLGH-RNGTVTMWSPTVQKP--LASLL---CHKAGIQSVAVNHTGTYMATSAGD--SQLRI  200 (315)
Q Consensus       129 ~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~---~~~~~i~~~~~sp~g~~l~~~~~d--~~i~i  200 (315)
                      ..+...+..++|+|+|+++++++ .++.|.+||+.+++.  +..+.   .+...+..++|+|||++|+++..+  +.|.+
T Consensus       207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence            22345678999999999887766 689999999987643  23232   233456899999999998776654  88999


Q ss_pred             EEcc--CCCC--CeeEeccCCCceeEEEccCCe-EEE-E-cCCEEEecC
Q psy9936         201 WDVR--NLEG--PLNTFRTRTPINNLAFSQRGL-LAT-S-RGNIVEFLK  242 (315)
Q Consensus       201 wd~~--~~~~--~~~~~~~~~~v~~~~~s~~g~-~~~-~-~~~~i~~~~  242 (315)
                      |++.  ++ .  .+..+.....+.+++|+|||. +++ + .++.+.+|.
T Consensus       287 ~~~~~~~g-~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          287 FKVDETNG-TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             EEECTTTC-CEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCC-cEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            9996  33 3  334444434688999999995 333 3 367888854

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=5.1e-21  Score=163.99  Aligned_cols=231  Identities=12%  Similarity=0.051  Sum_probs=162.5

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEcc-CceEEEEecC--CCceeEEEEeecCcE--EEEE--------------eC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWV-RKTLACEMNV--MEEVYDIKWLHLETM--FAVA--------------QK   71 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~--l~~~--------------~~   71 (315)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++......+  .+.+.+++|+|+|++  ++++              .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            367789999999999888877 89999997 7776544332  234667899999984  4443              47


Q ss_pred             CeEEEEeCC--CCEEEEee-----cCCceEEEEEcCCCceEEEEc-CCCeEEEEEcc-CCeEE--EEec--cCCCCeEEE
Q psy9936          72 DWVYIYDNQ--GIELHCLK-----VLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTS-IGKIV--SDFS--AKKGKLSVM  138 (315)
Q Consensus        72 ~~i~i~~~~--~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~--~~~~--~~~~~v~~~  138 (315)
                      +.+.+|++.  +.....+.     +...+.+++|+|+|++++++. .++.|.+||+. +++..  ..+.  .|...+..+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            889999984  44333332     346789999999999887765 46799999998 67643  2333  235668999


Q ss_pred             EEcCCCCEEEEEcC-CCeEEEEcCC--CCcce---eEee-------cccc------cEEEEE-ECCCCCEEEEeeCC-C-
Q psy9936         139 TQNPYNACICLGHR-NGTVTMWSPT--VQKPL---ASLL-------CHKA------GIQSVA-VNHTGTYMATSAGD-S-  196 (315)
Q Consensus       139 ~~~p~~~~l~~~~~-d~~i~i~d~~--~~~~~---~~~~-------~~~~------~i~~~~-~sp~g~~l~~~~~d-~-  196 (315)
                      +|+|+|+++++++. ++.|.+|+++  +++..   ..+.       +|..      .+..++ |+|||++|++++.+ + 
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            99999998887764 7899999765  45432   1222       1222      588999 99999988876543 2 


Q ss_pred             ----cEEEEEcc-CCCCCee---EeccC-CCceeEEEcc---CCeE-EEE-c-CCEEEecCC
Q psy9936         197 ----QLRIWDVR-NLEGPLN---TFRTR-TPINNLAFSQ---RGLL-ATS-R-GNIVEFLKP  243 (315)
Q Consensus       197 ----~i~iwd~~-~~~~~~~---~~~~~-~~v~~~~~s~---~g~~-~~~-~-~~~i~~~~~  243 (315)
                          .|.+|++. ++ ....   ....+ ..+..++|+|   ||.+ +++ . ++.|.+|+.
T Consensus       279 ~~~~~i~v~~~~~~g-~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          279 ELQGYIAGFKLRDCG-SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             TSCCEEEEEEECTTS-CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCCeEEEEEECCCC-CEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence                89999996 44 4332   13222 3578899999   7853 333 3 478998874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=4.5e-21  Score=162.67  Aligned_cols=199  Identities=11%  Similarity=0.069  Sum_probs=155.9

Q ss_pred             cEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceEEEEecCCC-------ceeEEEEeecCcEEEEEe-------------
Q psy9936          12 GIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTLACEMNVME-------EVYDIKWLHLETMFAVAQ-------------   70 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-------------   70 (315)
                      .+..++|+|+|++++ ++..++.|.+||+.+++....+....       .+..++|+|+|++++++.             
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            678999999998654 55678999999999998877665322       378899999999888776             


Q ss_pred             CCeEEEEeCCC----CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC--------------
Q psy9936          71 KDWVYIYDNQG----IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK--------------  132 (315)
Q Consensus        71 ~~~i~i~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------------  132 (315)
                      ++.|.+||+.+    ..+....+...+.+++|+|+|+ +++++.  .|.+||+.+++.+..+..+.              
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence            48999999854    2223444556788999999999 555543  49999999888776654321              


Q ss_pred             ------------------------------------------------------CCeEEEEEcC-CCCEEEEEcCCCeEE
Q psy9936         133 ------------------------------------------------------GKLSVMTQNP-YNACICLGHRNGTVT  157 (315)
Q Consensus       133 ------------------------------------------------------~~v~~~~~~p-~~~~l~~~~~d~~i~  157 (315)
                                                                            ..+..++|+| +|++++++  ++.|.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~  278 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA  278 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence                                                                  1345677889 99998888  88999


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                      +||+.+++.+..+.. ...+.+++|+|+|++|++++.++.|.+||+.++ +.+..+..+.
T Consensus       279 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~~~~  336 (349)
T 1jmx_B          279 KYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKLPG  336 (349)
T ss_dssp             EEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEECSS
T ss_pred             EEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeeecCC
Confidence            999999988777763 345678999999998888888999999999988 7777776553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.89  E-value=1.8e-19  Score=148.93  Aligned_cols=228  Identities=9%  Similarity=0.098  Sum_probs=177.4

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC-------CCceeEEEEe-ecCcEEEEEe--CCeEEEEeCC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV-------MEEVYDIKWL-HLETMFAVAQ--KDWVYIYDNQ   80 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-------~~~v~~~~~~-~~~~~l~~~~--~~~i~i~~~~   80 (315)
                      ..+.+++++|+|.++++...++.|.+||.. ++....+..       ...+..+++. +++.++++..  ++.|.+|+.+
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~  108 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  108 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence            468999999999988888888999999977 555555532       2467899994 6788877774  7899999987


Q ss_pred             CCEEEEeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          81 GIELHCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        81 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      +..+..+..  ...+.+++++|+|+++++...++.|.+||.. ++.+..+.  .+...+..++++|+|+++++...++.|
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i  187 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  187 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence            777665543  3578999999999988887888999999964 66665553  344568999999999988888889999


Q ss_pred             EEEcCCCCcceeEeecc--cccEEEEEECCCCCEEEEeeCCC-cEEEEEccCCCCCeeEeccCC---CceeEEEccCCe-
Q psy9936         157 TMWSPTVQKPLASLLCH--KAGIQSVAVNHTGTYMATSAGDS-QLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGL-  229 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~-  229 (315)
                      .+||.. ++.+..+..+  ...+..++++|+|+++++...++ .|.+||.. + ..+..+..+.   .+.+++++|+|. 
T Consensus       188 ~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~~i~~~~~g~l  264 (286)
T 1q7f_A          188 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALESKVKHAQCFDVALMDDGSV  264 (286)
T ss_dssp             EEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred             EEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-CEEEEEcccCCCCcceeEEECCCCcE
Confidence            999985 5556666433  35788999999999888888776 99999964 4 5666665443   367999999995 


Q ss_pred             EEEEcCCEEEecCC
Q psy9936         230 LATSRGNIVEFLKP  243 (315)
Q Consensus       230 ~~~~~~~~i~~~~~  243 (315)
                      ++++.++.|++|+.
T Consensus       265 ~vs~~~~~v~v~~~  278 (286)
T 1q7f_A          265 VLASKDYRLYIYRY  278 (286)
T ss_dssp             EEEETTTEEEEEEC
T ss_pred             EEECCCCeEEEEEc
Confidence            55566889999975

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=2.3e-22  Score=187.25  Aligned_cols=214  Identities=9%  Similarity=0.018  Sum_probs=155.2

Q ss_pred             cEEEEEEcCCCCEEEEEcC---------CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC
Q psy9936          12 GIYRMNYTKNGRHLLLGGK---------RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI   82 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~---------dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~   82 (315)
                      .+.+++|||||++|++++.         ++.|++||+.+++..........+..++|+|||+.|+.+.++.|++|++.+.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g  140 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD  140 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCC
Confidence            3889999999999998876         6899999999988732122335688999999999999999999999999654


Q ss_pred             EEEEeecC---Cce-----------------EEEEEcCCCceEEEEcCCC------------------------------
Q psy9936          83 ELHCLKVL---NKV-----------------TRMEFLPYHFLLATASEEG------------------------------  112 (315)
Q Consensus        83 ~~~~~~~~---~~v-----------------~~~~~~~~~~~l~~~~~d~------------------------------  112 (315)
                      ....+...   ..+                 .+++|+|||+.|++++.|.                              
T Consensus       141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~  220 (719)
T 1z68_A          141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK  220 (719)
T ss_dssp             CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred             CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence            43333211   112                 4899999999999887542                              


Q ss_pred             ----eEEEEEccCCeEE---E-----EeccCCCCeEEEEEcCCCCEEEEEcCC----CeEEEEc----CCCCcceeEe--
Q psy9936         113 ----YLSWLDTSIGKIV---S-----DFSAKKGKLSVMTQNPYNACICLGHRN----GTVTMWS----PTVQKPLASL--  170 (315)
Q Consensus       113 ----~i~~~d~~~~~~~---~-----~~~~~~~~v~~~~~~p~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~--  170 (315)
                          .|++||+.+++..   .     .+..|...+..++|+||++++++....    ..|.+||    +.+++....+  
T Consensus       221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~  300 (719)
T 1z68_A          221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH  300 (719)
T ss_dssp             CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE
T ss_pred             CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec
Confidence                7889999877642   1     133577789999999998877764322    3588999    8887766555  


Q ss_pred             --ecccccEE-----EEEECCCCCEEEE--eeCCC--cEEEEEccCCCCCeeEeccC-CCceeEEEccCC
Q psy9936         171 --LCHKAGIQ-----SVAVNHTGTYMAT--SAGDS--QLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRG  228 (315)
Q Consensus       171 --~~~~~~i~-----~~~~sp~g~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g  228 (315)
                        .+|...+.     .+.|+|||+.|+.  +..++  .|.+||+.++ . ...+..+ ..+..+.++ ++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-~-~~~lt~~~~~v~~~~~~-d~  367 (719)
T 1z68_A          301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-N-AIQITSGKWEAINIFRV-TQ  367 (719)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-T-CEECSCSSSCEEEEEEE-CS
T ss_pred             ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-c-eEecccCceEEEEEEEE-eC
Confidence              35677676     8899999996554  44555  5777787765 4 3444433 356777766 65

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.88  E-value=5.7e-20  Score=155.21  Aligned_cols=231  Identities=9%  Similarity=0.075  Sum_probs=176.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC------------------------CeEEEEEccCceEEEEec--CCCceeEEEEeecC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR------------------------GHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLE   63 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~   63 (315)
                      -..+.+++++|+|+++++...+                        +.|.+||..+++....+.  +...+..++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3568999999999999887766                        479999999898876665  33478899999999


Q ss_pred             cEEEEEe-CCeEEEEeCCCC--EEEEee----------cCCceEEEEEcC-CCceEEEEc-CCCeEEEEEccCCeEEEEe
Q psy9936          64 TMFAVAQ-KDWVYIYDNQGI--ELHCLK----------VLNKVTRMEFLP-YHFLLATAS-EEGYLSWLDTSIGKIVSDF  128 (315)
Q Consensus        64 ~~l~~~~-~~~i~i~~~~~~--~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~-~d~~i~~~d~~~~~~~~~~  128 (315)
                      +++++.. ++.|++|+.++.  .+..+.          +...+..++++| ++.++++.+ .++.|.+|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            9777765 689999999776  444442          124688999999 788877776 689999999 557777666


Q ss_pred             ccC----------CCCeEEEEEcCC-CCEEEEEcCCCeEEEEcCCCCcceeEee--cccccEEEEEECCCCCEEEE----
Q psy9936         129 SAK----------KGKLSVMTQNPY-NACICLGHRNGTVTMWSPTVQKPLASLL--CHKAGIQSVAVNHTGTYMAT----  191 (315)
Q Consensus       129 ~~~----------~~~v~~~~~~p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~----  191 (315)
                      ...          -..+..++++|+ +.++++...++.|++||..+++.+..+.  .+...+..++|+| +..+++    
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            422          233889999998 7777788889999999999888888774  4556788999999 433333    


Q ss_pred             ---eeCCCcEEEEEccCCCCCeeEecc---C-CCceeEEEccCCeEEEE--cCCEEEecCC
Q psy9936         192 ---SAGDSQLRIWDVRNLEGPLNTFRT---R-TPINNLAFSQRGLLATS--RGNIVEFLKP  243 (315)
Q Consensus       192 ---~~~d~~i~iwd~~~~~~~~~~~~~---~-~~v~~~~~s~~g~~~~~--~~~~i~~~~~  243 (315)
                         ...+..|++||..++ +.+..+..   + ..+..++++|+|.+.++  .++.|+.|++
T Consensus       261 ~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             CTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence               334558999999988 77777642   2 24899999999954443  4678887763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1e-19  Score=154.67  Aligned_cols=195  Identities=7%  Similarity=0.047  Sum_probs=140.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEc-CCCeEEEEEcc-Cce--EEEEecCC----------CceeEEEEeecCcEEEEEe-CCeE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGG-KRGHVAAFDWV-RKT--LACEMNVM----------EEVYDIKWLHLETMFAVAQ-KDWV   74 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~~-~~~--~~~~~~~~----------~~v~~~~~~~~~~~l~~~~-~~~i   74 (315)
                      ...+..++|+|||++|++++ .++.|.+|++. ++.  .+..+.+.          ..+.+++|+|+|+++++.. ++.|
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v  164 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV  164 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence            45678899999999888877 67899999985 333  33333222          2378899999999555544 6799


Q ss_pred             EEEeCC-CCEEEEe---e--cCCceEEEEEcCCCceEEE-EcCCCeEEEEEccC--CeE--EEEeccCC------CCeEE
Q psy9936          75 YIYDNQ-GIELHCL---K--VLNKVTRMEFLPYHFLLAT-ASEEGYLSWLDTSI--GKI--VSDFSAKK------GKLSV  137 (315)
Q Consensus        75 ~i~~~~-~~~~~~~---~--~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~--~~~--~~~~~~~~------~~v~~  137 (315)
                      .+|++. ...+...   .  ....+..++|+|+|+++++ ...++.|.+|++..  ++.  +..+....      ..+..
T Consensus       165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  244 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA  244 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred             EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence            999986 3333322   1  2246788999999996655 56788999999874  543  22333222      34888


Q ss_pred             EEEcCCCCEEE-EEcCCCeEEEEcCCCC---cceeEeecccccEEEEEECCCCCEEEEeeCC-CcEEEEEcc
Q psy9936         138 MTQNPYNACIC-LGHRNGTVTMWSPTVQ---KPLASLLCHKAGIQSVAVNHTGTYMATSAGD-SQLRIWDVR  204 (315)
Q Consensus       138 ~~~~p~~~~l~-~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-~~i~iwd~~  204 (315)
                      ++|+|+|++|+ +...++.|.+||+...   +.+..+..+...+..++|+|+|++|++++.+ +.|.+|++.
T Consensus       245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            99999999774 5556899999998732   4455555566678899999999998888764 889999554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=1.4e-20  Score=162.17  Aligned_cols=242  Identities=12%  Similarity=0.048  Sum_probs=166.0

Q ss_pred             EEEcCCCCEEEEEcC-CC--eEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE-eec
Q psy9936          16 MNYTKNGRHLLLGGK-RG--HVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC-LKV   89 (315)
Q Consensus        16 ~~~s~~~~~l~~~~~-dg--~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~-~~~   89 (315)
                      .+|||||++|++++. +|  .|.+||+.+++........ ..+..+.|+|||+.|+.+. ++.|++||+.+..... ...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            789999999998877 56  4888999999877666533 3445788999999988877 6799999996554433 332


Q ss_pred             C-CceEEE--EEcCCCceEEEE----------------------cCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC-C
Q psy9936          90 L-NKVTRM--EFLPYHFLLATA----------------------SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP-Y  143 (315)
Q Consensus        90 ~-~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p-~  143 (315)
                      . ..+...  .++|++..++..                      ..+..|.+||+.+++.... ..+...+..++|+| |
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-ecCCccccccEECCCC
Confidence            2 333333  348999888743                      2346799999998865443 34566789999999 9


Q ss_pred             CCEEEEEcCC------CeEEEEcCCCCcceeEeeccc--ccEEEEEECCCCCEEEEeeC-CC----cEEEEEccCCCCCe
Q psy9936         144 NACICLGHRN------GTVTMWSPTVQKPLASLLCHK--AGIQSVAVNHTGTYMATSAG-DS----QLRIWDVRNLEGPL  210 (315)
Q Consensus       144 ~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~sp~g~~l~~~~~-d~----~i~iwd~~~~~~~~  210 (315)
                      |+.|+.+..+      ..|.++|+..+.. ..+..+.  ..+..++|+|||+.|+..+. ++    .|++||+.++ +..
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g-~~~  277 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL-ENR  277 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC-CEE
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC-ceE
Confidence            9988876653      3788888876543 4444343  35788999999997766443 22    3999999987 432


Q ss_pred             e--EeccCC----CceeEEEccCCeEEE-----------EcCCEEEecCC--------------------------Ccee
Q psy9936         211 N--TFRTRT----PINNLAFSQRGLLAT-----------SRGNIVEFLKP--------------------------PEIN  247 (315)
Q Consensus       211 ~--~~~~~~----~v~~~~~s~~g~~~~-----------~~~~~i~~~~~--------------------------~~~~  247 (315)
                      .  .+....    ....+.|+|||..++           .++..|..|++                          ..++
T Consensus       278 ~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  357 (388)
T 3pe7_A          278 QLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPS  357 (388)
T ss_dssp             EEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCE
T ss_pred             EEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCcc
Confidence            2  222210    133458999995322           33556776654                          3458


Q ss_pred             ecccccccccCCc
Q psy9936         248 FEPRRKANKAGGS  260 (315)
Q Consensus       248 ~~~~~~~~~~~~~  260 (315)
                      |+|||+.++..+.
T Consensus       358 ~spDg~~l~~~s~  370 (388)
T 3pe7_A          358 FTPDDKQILFTSD  370 (388)
T ss_dssp             ECTTSSEEEEEEC
T ss_pred             CCCCCCEEEEEec
Confidence            9999988876553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=3.2e-21  Score=175.28  Aligned_cols=211  Identities=15%  Similarity=0.059  Sum_probs=157.6

Q ss_pred             CcEEEEEEcCCCCEEEEEcC---CCeEEEEEccC---ceEEEEecCCCceeEEEEeecCc--EEEEEeCCeEEEEeCCCC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGK---RGHVAAFDWVR---KTLACEMNVMEEVYDIKWLHLET--MFAVAQKDWVYIYDNQGI   82 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~---dg~i~v~~~~~---~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~i~i~~~~~~   82 (315)
                      ..+..++|||| +.+++++.   +....+|.+..   +... .+.....+...+|+|+++  .++++.++.+.+||+.+.
T Consensus        65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g  142 (582)
T 3o4h_A           65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG  142 (582)
T ss_dssp             SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT
T ss_pred             cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC
Confidence            47899999999 77776654   44455554322   2222 444344455778999875  444555666679999766


Q ss_pred             EEEEeecCCceEEEEEcCCCceEEEEcCC----CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC--eE
Q psy9936          83 ELHCLKVLNKVTRMEFLPYHFLLATASEE----GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG--TV  156 (315)
Q Consensus        83 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--~i  156 (315)
                      ....+..... .+++|+|||++|++++.+    +.|++||+.+++.. .+..|.+.+..++|+|||+.|+++..++  .|
T Consensus       143 ~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i  220 (582)
T 3o4h_A          143 GLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARL  220 (582)
T ss_dssp             EEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEE
T ss_pred             cEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEE
Confidence            6555443333 889999999999988776    77999999888754 5677888899999999999999888888  89


Q ss_pred             EEEcCCCCcceeEeecccccEEEEE--------ECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC
Q psy9936         157 TMWSPTVQKPLASLLCHKAGIQSVA--------VNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG  228 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~~~~i~~~~--------~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  228 (315)
                      .+||+.+++.. .+..|...+..++        |+|||.++++++.++.+++|++  + +....  ....+.+++|+ +|
T Consensus       221 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~~--~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          221 VTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVEA--PQGNHGRVVLW-RG  293 (582)
T ss_dssp             EEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEECC--CSSEEEEEEEE-TT
T ss_pred             EEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ceecc--CCCceEEEEec-CC
Confidence            99999988776 6667777666667        9999999999999999999999  5 54432  22458899999 88


Q ss_pred             eEEE
Q psy9936         229 LLAT  232 (315)
Q Consensus       229 ~~~~  232 (315)
                      .+++
T Consensus       294 ~~l~  297 (582)
T 3o4h_A          294 KLVT  297 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=2.8e-20  Score=173.62  Aligned_cols=215  Identities=11%  Similarity=0.029  Sum_probs=156.4

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCC-----ceeEEEEeecCcEEEEEeC----------CeE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VME-----EVYDIKWLHLETMFAVAQK----------DWV   74 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~l~~~~~----------~~i   74 (315)
                      ....+++|+|||++++++  ++.|++||+.+++....+. +..     ...++.|||||++|+.+.+          +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            345689999999988886  8999999999998776665 322     2244889999999988764          678


Q ss_pred             EEEeCCCCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE-eccCCCCe-----------------
Q psy9936          75 YIYDNQGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD-FSAKKGKL-----------------  135 (315)
Q Consensus        75 ~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v-----------------  135 (315)
                      ++||+.+.....+. +...+..++|||||+.||.+. ++.|++||+.++...+. ..++...+                 
T Consensus        95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            89999877665554 357799999999999999885 67999999988765432 22222222                 


Q ss_pred             EEEEEcCCCCEEEEEcCC------------------------------------CeEEEEcCCC---Cc--ceeEee---
Q psy9936         136 SVMTQNPYNACICLGHRN------------------------------------GTVTMWSPTV---QK--PLASLL---  171 (315)
Q Consensus       136 ~~~~~~p~~~~l~~~~~d------------------------------------~~i~i~d~~~---~~--~~~~~~---  171 (315)
                      ..+.|||||+.|+.++.|                                    ..|.+||+.+   ++  ....+.   
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            348999999999876422                                    1588899998   73  233343   


Q ss_pred             ---cccccEEEEEECCCCCEEEEeeC----CCcEEEEEccCCCC----C--eeEe--ccCC-Cc-----eeEEEccCCe
Q psy9936         172 ---CHKAGIQSVAVNHTGTYMATSAG----DSQLRIWDVRNLEG----P--LNTF--RTRT-PI-----NNLAFSQRGL  229 (315)
Q Consensus       172 ---~~~~~i~~~~~sp~g~~l~~~~~----d~~i~iwd~~~~~~----~--~~~~--~~~~-~v-----~~~~~s~~g~  229 (315)
                         +|...+..++|+|||++++....    +..|.+||+.++ +    +  +..+  ..+. .+     ..+.|+|||.
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg-~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES-SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT-TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC-ccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence               27778999999999997665533    336999999987 5    1  2222  2222 23     3789999995

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=7.8e-19  Score=150.02  Aligned_cols=212  Identities=9%  Similarity=0.086  Sum_probs=144.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEc-CCCeEEEEEccCceEEE----EecC-----------CCceeEEEEeecCcEEEEEe--C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGG-KRGHVAAFDWVRKTLAC----EMNV-----------MEEVYDIKWLHLETMFAVAQ--K   71 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~----~~~~-----------~~~v~~~~~~~~~~~l~~~~--~   71 (315)
                      ...+..+++  ++++|++++ .++.|.+|++.....+.    ...+           ...+.+++|+|+|++++++.  +
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  176 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT  176 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC
Confidence            345667777  788777665 57899999987433221    1111           12357899999999776664  6


Q ss_pred             CeEEEEeCC--CC----E---------EEEeecCCceEEEEEcCCCceEEEEc-CCCeEEEEEccCCeE--EEEec---c
Q psy9936          72 DWVYIYDNQ--GI----E---------LHCLKVLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTSIGKI--VSDFS---A  130 (315)
Q Consensus        72 ~~i~i~~~~--~~----~---------~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~--~~~~~---~  130 (315)
                      +.|.+|+++  +.    .         .........+..++|+|+|+++++++ .++.|.+||+.+++.  +..+.   .
T Consensus       177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~  256 (361)
T 3scy_A          177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV  256 (361)
T ss_dssp             TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS
T ss_pred             CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC
Confidence            799999874  21    1         11233346688999999999887776 689999999987754  23232   2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC--CCeEEEEcCC--CCc--ceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEc
Q psy9936         131 KKGKLSVMTQNPYNACICLGHR--NGTVTMWSPT--VQK--PLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDV  203 (315)
Q Consensus       131 ~~~~v~~~~~~p~~~~l~~~~~--d~~i~i~d~~--~~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~  203 (315)
                      +...+..++|+|||++|++++.  ++.|.+|+++  +++  .+..+.. ...+.+++|+|+|++|++++ .++.|.+|++
T Consensus       257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            3345789999999998877665  4899999986  344  3444443 45678999999999988887 6788999765


Q ss_pred             c--CCCCCeeEecc-C-CCceeEEEc
Q psy9936         204 R--NLEGPLNTFRT-R-TPINNLAFS  225 (315)
Q Consensus       204 ~--~~~~~~~~~~~-~-~~v~~~~~s  225 (315)
                      .  ++ +....... + ..+.++.|.
T Consensus       336 d~~~g-~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          336 DQATG-LLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CTTTC-CEEECSCCEECSSEEEEEEE
T ss_pred             ECCCC-cEeecceeeeCCCCeEEEEc
Confidence            4  44 33222211 1 247788875

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=6.4e-20  Score=171.25  Aligned_cols=208  Identities=8%  Similarity=0.055  Sum_probs=149.3

Q ss_pred             EEEEEcCCCCEEEEEcCC---------CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEE
Q psy9936          14 YRMNYTKNGRHLLLGGKR---------GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIEL   84 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~d---------g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~   84 (315)
                      ..++|||||++|++++.+         +.+.+||+.+++......+...+...+|||||+.||.+.++.|++|++.+...
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS  144 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence            347899999999988765         56789999999876544567789999999999999999999999999966544


Q ss_pred             EEeecC---Cce-----------------EEEEEcCCCceEEEEcCCC--------------------------------
Q psy9936          85 HCLKVL---NKV-----------------TRMEFLPYHFLLATASEEG--------------------------------  112 (315)
Q Consensus        85 ~~~~~~---~~v-----------------~~~~~~~~~~~l~~~~~d~--------------------------------  112 (315)
                      ..+...   ..+                 ..+.|||||+.||.++.|.                                
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~  224 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV  224 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence            444322   112                 3489999999998874221                                


Q ss_pred             ----eEEEEEccC---C---eEEEEec------cCCCCeEEEEEcCCCCEEEEEc----CCCeEEEEcCCCCc----c--
Q psy9936         113 ----YLSWLDTSI---G---KIVSDFS------AKKGKLSVMTQNPYNACICLGH----RNGTVTMWSPTVQK----P--  166 (315)
Q Consensus       113 ----~i~~~d~~~---~---~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~----~d~~i~i~d~~~~~----~--  166 (315)
                          .|++||+.+   +   +.. .+.      +|...+..++|+|||+.++...    .+..|.+||+.+++    +  
T Consensus       225 ~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~  303 (740)
T 4a5s_A          225 NPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV  303 (740)
T ss_dssp             CCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred             CCeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence                488899988   7   333 333      2667789999999999666543    23479999999887    1  


Q ss_pred             eeEe--ecccccEE-----EEEECCCCCEEE-EeeC-CC--cEEEEEccCCCCCeeEeccCCCceeEE
Q psy9936         167 LASL--LCHKAGIQ-----SVAVNHTGTYMA-TSAG-DS--QLRIWDVRNLEGPLNTFRTRTPINNLA  223 (315)
Q Consensus       167 ~~~~--~~~~~~i~-----~~~~sp~g~~l~-~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~  223 (315)
                      +..+  ..|...+.     .++|+|||+.|+ ..+. +|  .|++||+.++ .+.........+..+.
T Consensus       304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~-~~~~lT~g~~~v~~~~  370 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DCTFITKGTWEVIGIE  370 (740)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-SCEESCCSSSCEEEEE
T ss_pred             EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC-ceEecccCCEEEEEEE
Confidence            2222  34665554     789999999877 6653 34  5888888876 5444333444555543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=2.1e-19  Score=155.13  Aligned_cols=243  Identities=12%  Similarity=0.059  Sum_probs=164.7

Q ss_pred             EEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCcee-EEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          13 IYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVY-DIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      +..++|||||++|+.....   ..|.+|++.+++......+..... .+.|+|||+.|+.+. ++.|++|++.+.....+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            5678899999998876443   478899999888665544444433 488999999887766 67899999976544443


Q ss_pred             ec-CCc-eEE-------------------EEEcCCCceEEEE-----cCCCeEEEEEccCCeEEEEeccCCCCeEEEEEc
Q psy9936          88 KV-LNK-VTR-------------------MEFLPYHFLLATA-----SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQN  141 (315)
Q Consensus        88 ~~-~~~-v~~-------------------~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  141 (315)
                      .. ... ...                   +.|+|+++.++..     ..+..|.+||+.+++..... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            32 221 111                   3467777766554     35667999999988765544 456678999999


Q ss_pred             C-CCCEEEEEcCC------CeEEEEcCCCCcceeEeecc--cccEEEEEECCCCCEEEEeeCC-----CcEEEEEccCCC
Q psy9936         142 P-YNACICLGHRN------GTVTMWSPTVQKPLASLLCH--KAGIQSVAVNHTGTYMATSAGD-----SQLRIWDVRNLE  207 (315)
Q Consensus       142 p-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d-----~~i~iwd~~~~~  207 (315)
                      | ++..|+..+.+      ..|.+||+.+++.. .+..+  ...+..++|+|+|++|+.++.+     +.|++||+.++ 
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g-  274 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL-  274 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC-
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC-
Confidence            9 78877665443      46889998765433 33323  2357889999999988777544     44999999886 


Q ss_pred             CCeeEeccCCCceeEEEcc-CCeEEEE------------------cCCEEEecCC-----------C-------------
Q psy9936         208 GPLNTFRTRTPINNLAFSQ-RGLLATS------------------RGNIVEFLKP-----------P-------------  244 (315)
Q Consensus       208 ~~~~~~~~~~~v~~~~~s~-~g~~~~~------------------~~~~i~~~~~-----------~-------------  244 (315)
                      ......... ... +.|+| ||.+++.                  ++..|..|++           .             
T Consensus       275 ~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~  352 (396)
T 3c5m_A          275 ENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQIT  352 (396)
T ss_dssp             CEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTT
T ss_pred             CeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCC
Confidence            443322222 233 89999 9964443                  2367777764           1             


Q ss_pred             --ceeecccccccccCCc
Q psy9936         245 --EINFEPRRKANKAGGS  260 (315)
Q Consensus       245 --~~~~~~~~~~~~~~~~  260 (315)
                        .+.|+|+++.++..+.
T Consensus       353 ~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          353 HPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             CCCCEECTTSSEEEEEEC
T ss_pred             CCCceEccCCCeEEEEec
Confidence              2578899988776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=1.8e-18  Score=148.12  Aligned_cols=237  Identities=14%  Similarity=0.097  Sum_probs=158.3

Q ss_pred             EEEEEcCC--CeEEEEEc--cCceEEEE--ec--CCCceeEEEEeecCcEEEEEeCCeEEEEeCC-CCEEE-EeecC--C
Q psy9936          24 HLLLGGKR--GHVAAFDW--VRKTLACE--MN--VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GIELH-CLKVL--N   91 (315)
Q Consensus        24 ~l~~~~~d--g~i~v~~~--~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~~~~-~~~~~--~   91 (315)
                      ++++|+..  +.|.+|++  .++++...  ..  ....+..++|+|++++|++++.+.|.+|++. ...+. ...+.  +
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCC
Confidence            35555543  56887765  46654322  21  2346889999999998887775599999984 43332 22221  3


Q ss_pred             ceEEEEEcCCCce--EEEEc-------------CCCeEEEEEcc-CCeEEEEec----cCCCCeEEEEEcCCCCEEEEEc
Q psy9936          92 KVTRMEFLPYHFL--LATAS-------------EEGYLSWLDTS-IGKIVSDFS----AKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        92 ~v~~~~~~~~~~~--l~~~~-------------~d~~i~~~d~~-~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                      .+.+++|+|+|++  +++++             .++.+.+|++. +++....+.    .+...+.+++|+|+|++|++++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            4566899999984  45553             68899999997 465544333    2456789999999999888765


Q ss_pred             -CCCeEEEEcCC-CCcce--eEee--cccccEEEEEECCCCCEEEEeeC-CCcEEEEEcc--CCCCCe---eEec---c-
Q psy9936         152 -RNGTVTMWSPT-VQKPL--ASLL--CHKAGIQSVAVNHTGTYMATSAG-DSQLRIWDVR--NLEGPL---NTFR---T-  215 (315)
Q Consensus       152 -~d~~i~i~d~~-~~~~~--~~~~--~~~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~--~~~~~~---~~~~---~-  215 (315)
                       .++.|.+||+. +++..  ..+.  .|...+..++|+|+|++|++++. ++.|.+|++.  ++ ...   ..+.   . 
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~  242 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPG  242 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEESSCTT
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEccceEEcCCCC
Confidence             36799999998 66542  2333  23567899999999999888775 6889999875  34 332   1221   1 


Q ss_pred             ---CC-------CceeEE-EccCCeE--EEEc-CC-----EEEecCC--------------------Cceeecc---ccc
Q psy9936         216 ---RT-------PINNLA-FSQRGLL--ATSR-GN-----IVEFLKP--------------------PEINFEP---RRK  253 (315)
Q Consensus       216 ---~~-------~v~~~~-~s~~g~~--~~~~-~~-----~i~~~~~--------------------~~~~~~~---~~~  253 (315)
                         +.       .+..++ |+|||.+  ++.. ++     .|.+|++                    ..++|+|   +++
T Consensus       243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred             cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence               12       377899 9999953  2322 23     6776632                    3455678   788


Q ss_pred             ccccCCcc
Q psy9936         254 ANKAGGSV  261 (315)
Q Consensus       254 ~~~~~~~~  261 (315)
                      +++.++.+
T Consensus       323 ~l~v~~~~  330 (365)
T 1jof_A          323 WMAITDDQ  330 (365)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEcC
Confidence            88777654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.83  E-value=2.9e-18  Score=145.48  Aligned_cols=211  Identities=8%  Similarity=0.066  Sum_probs=149.0

Q ss_pred             cEEEEEEcCCCCEEEEEcCC---C--eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C--------------
Q psy9936          12 GIYRMNYTKNGRHLLLGGKR---G--HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K--------------   71 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~d---g--~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--------------   71 (315)
                      .+..++|||||++|++.+.+   +  .|++|++.+++......... +..+.|+|||+.|+.+. +              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            46778999999999887643   2  48888998888766665445 99999999999887764 2              


Q ss_pred             -------------CeEEEEeCCCCEE-EEeecCCceEEEEEcCCCceEEEEcCCC-------eEEEEEccCCeEEEEecc
Q psy9936          72 -------------DWVYIYDNQGIEL-HCLKVLNKVTRMEFLPYHFLLATASEEG-------YLSWLDTSIGKIVSDFSA  130 (315)
Q Consensus        72 -------------~~i~i~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~  130 (315)
                                   ..|++|++.+... ..+... .+..+.|+|+| +++++..++       ...+|.+.+++.. .+..
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~  215 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFE  215 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEE
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-Eecc
Confidence                         4689999976655 444443 78899999999 777775432       3344444455443 3333


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC--------CeEEEEcCCCCcceeEeecccccEEE-EEECCCCCEEEEeeCCCcEEEE
Q psy9936         131 KKGKLSVMTQNPYNACICLGHRN--------GTVTMWSPTVQKPLASLLCHKAGIQS-VAVNHTGTYMATSAGDSQLRIW  201 (315)
Q Consensus       131 ~~~~v~~~~~~p~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~sp~g~~l~~~~~d~~i~iw  201 (315)
                      + ..+..+  +|+|++|+.++.+        ..|.+||  +++.......+...+.. +.|+ +| ++++++.++.++||
T Consensus       216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence            4 445444  9999988776643        4788888  55544444456678886 9999 88 88999999999999


Q ss_pred             EccCCCCCeeEeccCCCceeEEEccCCeEEE-EcCC
Q psy9936         202 DVRNLEGPLNTFRTRTPINNLAFSQRGLLAT-SRGN  236 (315)
Q Consensus       202 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~-~~~~  236 (315)
                       +.++ ...........+.+++|+| ..+++ +.++
T Consensus       289 -~~~g-~~~~~~~~~~~v~~~~~s~-~~~~~~~~~~  321 (347)
T 2gop_A          289 -IWDG-EIKPIAKGRHWIMGFDVDE-IVVYLKETAT  321 (347)
T ss_dssp             -EESS-SEEEEECSSSEEEEEEESS-SEEEEEECSS
T ss_pred             -EcCC-ceEEEecCCCeEEeeeeeC-cEEEEEcCCC
Confidence             8854 5544444444689999999 75443 3344

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.82  E-value=1.8e-17  Score=137.63  Aligned_cols=225  Identities=11%  Similarity=0.028  Sum_probs=161.9

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~   86 (315)
                      .....+++|+|+|+ +++++..++.|..|+..++  ...+. +...+.+++++|+|+++++.. ++.|.+||........
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            45578999999998 7778888899999999887  33443 566789999999999887776 5799999994333333


Q ss_pred             e-ec-----CCceEEEEEcCCCceEEE----Ec-------------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCC
Q psy9936          87 L-KV-----LNKVTRMEFLPYHFLLAT----AS-------------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPY  143 (315)
Q Consensus        87 ~-~~-----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~  143 (315)
                      + ..     ...+..++++|+|+++++    ++             ..+.|..++.. ++. ..+..+......++|+|+
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTT
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCC
Confidence            2 21     135678999999998887    33             13466666655 443 334455667899999999


Q ss_pred             CCEEEEEcCCCeEEEEcCC-CCcc---eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc
Q psy9936         144 NACICLGHRNGTVTMWSPT-VQKP---LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI  219 (315)
Q Consensus       144 ~~~l~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  219 (315)
                      |+.+++.+.++.|.+||+. +++.   ...+..+...+.+++++++|+++++.  ++.|.+||.. + +.+..+..+..+
T Consensus       183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g-~~~~~~~~~~~~  258 (296)
T 3e5z_A          183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G-DELGRVLTPQTT  258 (296)
T ss_dssp             SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S-CEEEEEECSSCC
T ss_pred             CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C-CEEEEEECCCCc
Confidence            9988777888999999987 4443   22333345566789999999976666  7889999987 4 677777766558


Q ss_pred             eeEEE-ccCCe-EEEEcCCEEEecC
Q psy9936         220 NNLAF-SQRGL-LATSRGNIVEFLK  242 (315)
Q Consensus       220 ~~~~~-s~~g~-~~~~~~~~i~~~~  242 (315)
                      .+++| +|++. +.++..+.+..++
T Consensus       259 ~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          259 SNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             CEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             eeEEEECCCCCEEEEEcCCeEEEEE
Confidence            99999 57873 4444444444333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=1.5e-18  Score=149.44  Aligned_cols=213  Identities=9%  Similarity=-0.026  Sum_probs=145.7

Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC-CCceeEEE--EeecCcEEEEE---------------------
Q psy9936          14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV-MEEVYDIK--WLHLETMFAVA---------------------   69 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~v~~~~--~~~~~~~l~~~---------------------   69 (315)
                      ..++|+|||+.|++++.++.|++||+.+++....+.. ...+....  ++|++.+++..                     
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             SSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             cceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence            3568999999999999889999999999987766653 33343333  47899888743                     


Q ss_pred             --eCCeEEEEeCCCCEEEEe-ecCCceEEEEEcC-CCceEEEEcCC------CeEEEEEccCCeEEEEeccCC--CCeEE
Q psy9936          70 --QKDWVYIYDNQGIELHCL-KVLNKVTRMEFLP-YHFLLATASEE------GYLSWLDTSIGKIVSDFSAKK--GKLSV  137 (315)
Q Consensus        70 --~~~~i~i~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~--~~v~~  137 (315)
                        .+..|++||+.+.....+ .+...+..+.|+| +|+.|+....+      ..|.++|+..+.. ..+..+.  ..+..
T Consensus       164 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTH  242 (388)
T ss_dssp             GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEE
T ss_pred             cCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccccc
Confidence              135799999965554444 4557789999999 99988877653      3688888775543 3444443  24778


Q ss_pred             EEEcCCCCEEEEEcC-C----CeEEEEcCCCCcce--eEeeccccc---EEEEEECCCCCEEEEe---------eCCCcE
Q psy9936         138 MTQNPYNACICLGHR-N----GTVTMWSPTVQKPL--ASLLCHKAG---IQSVAVNHTGTYMATS---------AGDSQL  198 (315)
Q Consensus       138 ~~~~p~~~~l~~~~~-d----~~i~i~d~~~~~~~--~~~~~~~~~---i~~~~~sp~g~~l~~~---------~~d~~i  198 (315)
                      ++|+|||+.|+..+. +    ..|.+||+.+++..  ..+.++...   ...+.|+|||++|+..         ..+..|
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence            899999997765432 2    24999999988642  233221111   1123799999988754         445689


Q ss_pred             EEEEccCCCCCeeEeccCC------------CceeEEEccCCe
Q psy9936         199 RIWDVRNLEGPLNTFRTRT------------PINNLAFSQRGL  229 (315)
Q Consensus       199 ~iwd~~~~~~~~~~~~~~~------------~v~~~~~s~~g~  229 (315)
                      ++||+.++ .. ..+..+.            .+.+++|+|||.
T Consensus       323 ~~~d~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~  363 (388)
T 3pe7_A          323 YVFNMKNG-TQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDK  363 (388)
T ss_dssp             EEEETTTT-EE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             EEEeccCC-ce-EEeccccCcccccccccccCCCCccCCCCCC
Confidence            99999886 44 3333332            378899999994

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.81  E-value=3.6e-17  Score=133.80  Aligned_cols=231  Identities=10%  Similarity=-0.039  Sum_probs=164.8

Q ss_pred             cEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee-
Q psy9936          12 GIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK-   88 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~-   88 (315)
                      .+.+++++|+|++++ +...++.|.+|+..+........ ....+.++++.++++++++..++.|.+|+..+.....+. 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence            788999999998777 54677899999976654332211 335678899999998777666789999999776554443 


Q ss_pred             -cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce
Q psy9936          89 -VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus        89 -~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~  167 (315)
                       ....+..++++|+|.++++...++.|.+|+..+.............+..++++|+|+++++...++.|.+||.......
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  184 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  184 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence             2367899999999988777777889999986554433222223345788999999997777777889999998876543


Q ss_pred             eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCCeE-EEE-cCCEEEecCC
Q psy9936         168 ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRGLL-ATS-RGNIVEFLKP  243 (315)
Q Consensus       168 ~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~-~~~-~~~~i~~~~~  243 (315)
                      .....+...+.+++++|+|.++++...++.|.+|+..+. ........+ ..+.+++++|+|.+ ++. .++.|+.++.
T Consensus       185 ~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          185 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-CCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-cceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            332233367889999999987777777889999998764 332222122 35899999999953 443 4788888764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=1.4e-17  Score=142.31  Aligned_cols=211  Identities=12%  Similarity=0.108  Sum_probs=141.8

Q ss_pred             EEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEecC-------CCceeEEEEeecCcEEEEEe---CCeE
Q psy9936          15 RMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMNV-------MEEVYDIKWLHLETMFAVAQ---KDWV   74 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~---~~~i   74 (315)
                      .++|+|||++++++.          .++.|.+||..+++....+..       ......++++|||++|+++.   ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998875          256799999999888877652       23467899999999998875   4789


Q ss_pred             EEEeCCCCEE-EE-eecCCceEEEEEcCCC-ceEEEEcCCCeEEE-----------------------------------
Q psy9936          75 YIYDNQGIEL-HC-LKVLNKVTRMEFLPYH-FLLATASEEGYLSW-----------------------------------  116 (315)
Q Consensus        75 ~i~~~~~~~~-~~-~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~-----------------------------------  116 (315)
                      .+||+....+ .. +... ....+.+.|++ ..+++.+.||.+.+                                   
T Consensus       134 ~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~  212 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD  212 (361)
T ss_dssp             EEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS
T ss_pred             EEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC
Confidence            9999965443 33 3222 11223334432 23333334444444                                   


Q ss_pred             -------------EEccCCe--EEEEecc------C----CCCeEEEEEcCCCCEEEEEcC-----------CCeEEEEc
Q psy9936         117 -------------LDTSIGK--IVSDFSA------K----KGKLSVMTQNPYNACICLGHR-----------NGTVTMWS  160 (315)
Q Consensus       117 -------------~d~~~~~--~~~~~~~------~----~~~v~~~~~~p~~~~l~~~~~-----------d~~i~i~d  160 (315)
                                   +|+....  ....+..      +    ......++|+|+++.++++..           .+.|.+||
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD  292 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD  292 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence                         4433221  1111100      0    001112688999887776543           35899999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC-CCeeEe-ccCCCceeEEEccCCe
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE-GPLNTF-RTRTPINNLAFSQRGL  229 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~s~~g~  229 (315)
                      +.+++.+.++..+.  +.+++|+|||++|++++. +.|.+||..++. +.+..+ ........++++|+|.
T Consensus       293 ~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          293 TKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999998766  899999999999998887 999999998851 334454 3344678999999984

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=3.6e-18  Score=157.45  Aligned_cols=230  Identities=10%  Similarity=-0.007  Sum_probs=160.3

Q ss_pred             CCcEEEEEEcCCCCEEEEE--cCCCeEEEEEcc-CceEEEEecCCCcee---------EEEEe--ecCcE-EEEEeC--C
Q psy9936          10 QFGIYRMNYTKNGRHLLLG--GKRGHVAAFDWV-RKTLACEMNVMEEVY---------DIKWL--HLETM-FAVAQK--D   72 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~--~~dg~i~v~~~~-~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~~--~   72 (315)
                      ...+..++|++++-+++..  +.++...||... ++.......+...+.         ...|+  |||+. |+.+.+  .
T Consensus        23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~  102 (662)
T 3azo_A           23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ  102 (662)
T ss_dssp             CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred             CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence            4678899999887677766  557888999853 444333333544555         56676  99988 887764  5


Q ss_pred             eEEEEeCC--C-CEEEEeec------CCceEEEEEcCCCceEEEEcCC----------CeEEEEEccC------CeEEEE
Q psy9936          73 WVYIYDNQ--G-IELHCLKV------LNKVTRMEFLPYHFLLATASEE----------GYLSWLDTSI------GKIVSD  127 (315)
Q Consensus        73 ~i~i~~~~--~-~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~~~~~  127 (315)
                      .|+++++.  + .....+..      ...+..++|+|||+.|++++.+          ..|++||+.+      +.. ..
T Consensus       103 ~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~  181 (662)
T 3azo_A          103 RLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RE  181 (662)
T ss_dssp             CEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EE
T ss_pred             eEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eE
Confidence            78888877  3 44444433      3567899999999999988876          5799999987      544 44


Q ss_pred             ec-cCCCCeEEEEEcCCCCEEEEEcCC--------CeEEEEcCC-CC---cceeEeecccccEEEEEECCCCCEEEEeeC
Q psy9936         128 FS-AKKGKLSVMTQNPYNACICLGHRN--------GTVTMWSPT-VQ---KPLASLLCHKAGIQSVAVNHTGTYMATSAG  194 (315)
Q Consensus       128 ~~-~~~~~v~~~~~~p~~~~l~~~~~d--------~~i~i~d~~-~~---~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~  194 (315)
                      +. .+...+..++|+|||++|+.++.+        ..|.+||+. ++   +.......|...+..++|+|||+++++++.
T Consensus       182 l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~  261 (662)
T 3azo_A          182 LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR  261 (662)
T ss_dssp             SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT
T ss_pred             EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECC
Confidence            55 555677889999999999877654        489999998 56   333333445788999999999998888888


Q ss_pred             CC--cEEEEEccCCCCCeeEeccCCC---------ceeEEEccCCeEEEEc-CCEEEec
Q psy9936         195 DS--QLRIWDVRNLEGPLNTFRTRTP---------INNLAFSQRGLLATSR-GNIVEFL  241 (315)
Q Consensus       195 d~--~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~s~~g~~~~~~-~~~i~~~  241 (315)
                      ++  .|.+||+.++ +.......+..         +..++|+|++.++++. .+.+++|
T Consensus       262 ~~~~~l~~~~~~~~-~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~  319 (662)
T 3azo_A          262 TGWWNLHRVDPATG-AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLG  319 (662)
T ss_dssp             TSSCEEEEECTTTC-CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEE
T ss_pred             CCCeEEEEEECCCC-ceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEE
Confidence            88  5666666555 43333332221         4678899988544332 2555555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=2.2e-16  Score=133.23  Aligned_cols=222  Identities=10%  Similarity=0.104  Sum_probs=161.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-cCCCceeEEEEeecCcEEEEEeC-----CeEEEEeCCCCE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-NVMEEVYDIKWLHLETMFAVAQK-----DWVYIYDNQGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----~~i~i~~~~~~~   83 (315)
                      ...+.+++|+|+|++++++..++.|.+||..+++..... .+...+.+++|+|++++++++..     +.|.+||.++..
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~  123 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  123 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence            456789999999998888888899999999888766554 35678999999999998887764     489999987655


Q ss_pred             EE-Eee---cCCceEEEEEcCCCceEEEEcC------CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcC
Q psy9936          84 LH-CLK---VLNKVTRMEFLPYHFLLATASE------EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHR  152 (315)
Q Consensus        84 ~~-~~~---~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~  152 (315)
                      .. .+.   ....+.+++++|+|.++++...      .+.|..+|..+++.... ..+...+..++|+|+|+.|+ +...
T Consensus       124 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~  202 (333)
T 2dg1_A          124 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETT  202 (333)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCC
Confidence            43 222   2356899999999987776653      35677777665544332 22334578899999998654 4456


Q ss_pred             CCeEEEEcCCC-CcceeEe--------ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC------
Q psy9936         153 NGTVTMWSPTV-QKPLASL--------LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT------  217 (315)
Q Consensus       153 d~~i~i~d~~~-~~~~~~~--------~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------  217 (315)
                      ++.|.+||+++ +..+..+        .++ ..+..++++++|+++++...++.|.+||.. + ..+..+..+.      
T Consensus       203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g-~~~~~~~~~~~~~g~~  279 (333)
T 2dg1_A          203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G-YPIGQILIPGRDEGHM  279 (333)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S-CEEEEEECTTGGGTCS
T ss_pred             CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C-CEEEEEEcCCCccccc
Confidence            78999999864 3333221        112 467889999999988888888899999984 4 5666665443      


Q ss_pred             -CceeEEEccCC-e-EEEEcC
Q psy9936         218 -PINNLAFSQRG-L-LATSRG  235 (315)
Q Consensus       218 -~v~~~~~s~~g-~-~~~~~~  235 (315)
                       .+.+++|+||+ . ++++.+
T Consensus       280 ~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          280 LRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CBCCEEEECTTSCEEEEEEEC
T ss_pred             cCcceEEECCCCCEEEEEeCc
Confidence             47899999997 3 444544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.80  E-value=3.7e-17  Score=134.26  Aligned_cols=209  Identities=12%  Similarity=0.073  Sum_probs=169.2

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCC--CceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecC--CceEEE
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVM--EEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVL--NKVTRM   96 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~--~~v~~~   96 (315)
                      .+++|++++.++.|.+||.++++.+..+...  ..+.++.++|+|++++ +.++.|+.||.+++.+..+...  ..+.++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCcccccc
Confidence            4578999999999999999999999888744  3689999999999988 5678899999988888777654  478899


Q ss_pred             EEcCCCceEEEEcC-CCeEEEEEccCCeEEEEeccC------CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeE
Q psy9936          97 EFLPYHFLLATASE-EGYLSWLDTSIGKIVSDFSAK------KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLAS  169 (315)
Q Consensus        97 ~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~  169 (315)
                      .+.|+|+++++.+. ++.+..+|. +|+.+..+...      ......+++.++|+++++...++.|..||.. ++.+.+
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~  160 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS  160 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence            99999999999887 778888886 67777665421      1234456789999999999999999999998 998888


Q ss_pred             eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-------CceeEEEccCCe-EEEEc
Q psy9936         170 LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-------PINNLAFSQRGL-LATSR  234 (315)
Q Consensus       170 ~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~g~-~~~~~  234 (315)
                      +..+ ..+.++.+.++|+++++++.++.|..+|..++ +.+..+....       .+..+...++|. ++++.
T Consensus       161 ~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          161 VKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8754 45567888999999999998889999999988 8887775321       167888889995 44443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=1.5e-16  Score=131.39  Aligned_cols=192  Identities=12%  Similarity=0.160  Sum_probs=149.3

Q ss_pred             CcEEEEEE-cCCCCEEEEEcC-CCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEE
Q psy9936          11 FGIYRMNY-TKNGRHLLLGGK-RGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELH   85 (315)
Q Consensus        11 ~~v~~~~~-s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~   85 (315)
                      ..+.++++ .+++.++++... ++.|.+|+ .+++....+.  +...+.++++.|+|+++++.. ++.|.+|+.++..+.
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~  155 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH  155 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE
Confidence            46789999 577776666533 78899999 5666666664  335689999999998777765 689999999887766


Q ss_pred             Eeec---CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEcCCC-eEEEE
Q psy9936          86 CLKV---LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK--KGKLSVMTQNPYNACICLGHRNG-TVTMW  159 (315)
Q Consensus        86 ~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~d~-~i~i~  159 (315)
                      .+..   ...+..++++|+++++++...++.|.+||.. ++.+..+..+  ...+..++++|+|+++++...++ .|.+|
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  234 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence            6642   3568999999999988888889999999974 6666666433  35689999999999888887776 99999


Q ss_pred             cCCCCcceeEeeccc--ccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         160 SPTVQKPLASLLCHK--AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       160 d~~~~~~~~~~~~~~--~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      |.. ++.+..+..+.  ..+.+++++|+|+++++ +.++.|++|++...
T Consensus       235 ~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          235 TQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            964 66677666543  34789999999987776 67899999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=7.9e-18  Score=155.20  Aligned_cols=215  Identities=10%  Similarity=-0.064  Sum_probs=150.2

Q ss_pred             EEEEc--CCCCE-EEEEcC-CCeEEEEEcc--C-ceEEEEec-----CCCceeEEEEeecCcEEEEEe-C----------
Q psy9936          15 RMNYT--KNGRH-LLLGGK-RGHVAAFDWV--R-KTLACEMN-----VMEEVYDIKWLHLETMFAVAQ-K----------   71 (315)
Q Consensus        15 ~~~~s--~~~~~-l~~~~~-dg~i~v~~~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-~----------   71 (315)
                      ...|+  |||+. |+.++. +..|+++++.  + +.......     +...+..++|+|||+.|+.++ +          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            44455  99998 776654 5678888876  3 54433333     345688999999999888765 3          


Q ss_pred             CeEEEEeCCC------CEEEEee--cCCceEEEEEcCCCceEEEEcCC--------CeEEEEEcc-CC---eEEEEeccC
Q psy9936          72 DWVYIYDNQG------IELHCLK--VLNKVTRMEFLPYHFLLATASEE--------GYLSWLDTS-IG---KIVSDFSAK  131 (315)
Q Consensus        72 ~~i~i~~~~~------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~-~~---~~~~~~~~~  131 (315)
                      ..|++|++.+      .....+.  +...+..++|+|||++|+.++.+        ..|++||+. ++   +.......+
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            4899999976      5555544  34677889999999999887754        379999998 56   444444455


Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCC--eEEEEcCCCCcceeEeeccccc--------EEEEEECCCCCEEEEeeCCCcEEEE
Q psy9936         132 KGKLSVMTQNPYNACICLGHRNG--TVTMWSPTVQKPLASLLCHKAG--------IQSVAVNHTGTYMATSAGDSQLRIW  201 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~sp~g~~l~~~~~d~~i~iw  201 (315)
                      ...+..++|+|||+++++++.++  .|.+||+.+++.......+...        +..++|+|++.++++++. +.++||
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~  319 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG  319 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence            67899999999999888888888  7778887766544333322221        467899999999999998 999999


Q ss_pred             Ec--cCCCCCeeEeccCC-CceeE-EEccCCeEEE
Q psy9936         202 DV--RNLEGPLNTFRTRT-PINNL-AFSQRGLLAT  232 (315)
Q Consensus       202 d~--~~~~~~~~~~~~~~-~v~~~-~~s~~g~~~~  232 (315)
                      .+  .++  .+..+..+. .+..+ +++++..+++
T Consensus       320 ~~d~~~~--~~~~l~~~~~~~~~~~s~~~~~~~~~  352 (662)
T 3azo_A          320 ILDPESG--ELVDAAGPWTEWAATLTVSGTRAVGV  352 (662)
T ss_dssp             EEETTTT--EEEECCSSCCEEEEEEEEETTEEEEE
T ss_pred             EEECCCC--cEEEecCCCCeEEEEEecCCCEEEEE
Confidence            54  443  355665554 35555 4444444433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=8.4e-17  Score=135.77  Aligned_cols=230  Identities=8%  Similarity=0.027  Sum_probs=161.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      ...|.+++|+|++..++..+.++.++.|.   ++....+. +...+.+++|+|++++++++. ++.|++||..+.....+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             ccccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            45678889999988877777788899992   33343443 556678999999999877765 78999999976554443


Q ss_pred             --ecCCceEEEEEcCCCceEEEEcCC----CeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcC------C
Q psy9936          88 --KVLNKVTRMEFLPYHFLLATASEE----GYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHR------N  153 (315)
Q Consensus        88 --~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~------d  153 (315)
                        .+...+.+++++|+++++++...+    +.|.+||..++.....+.  .+...+..++++|+|+++++...      .
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence              344779999999999888777666    689999998776543332  23456899999999987776653      3


Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEe--------ccCCCceeEEE
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTF--------RTRTPINNLAF  224 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~  224 (315)
                      +.|..+|..+++.. .+..+...+..++|+|+|++|+.+ +.++.|.+||+.+....+..+        ..+..+..+++
T Consensus       162 ~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~  240 (333)
T 2dg1_A          162 GGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  240 (333)
T ss_dssp             EEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE
Confidence            56777777655433 333334567899999999866544 567899999996421333211        12234788999


Q ss_pred             ccCCeEE-EE-cCCEEEecCC
Q psy9936         225 SQRGLLA-TS-RGNIVEFLKP  243 (315)
Q Consensus       225 s~~g~~~-~~-~~~~i~~~~~  243 (315)
                      +++|.+. ++ .++.|..|++
T Consensus       241 d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          241 DSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             BTTCCEEEEEETTTEEEEECT
T ss_pred             CCCCCEEEEEcCCCEEEEECC
Confidence            9999644 43 3677887755

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=3.8e-16  Score=131.65  Aligned_cols=227  Identities=11%  Similarity=0.063  Sum_probs=165.0

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEE-eCCeEEEEeCCCCEEE-Eee
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVA-QKDWVYIYDNQGIELH-CLK   88 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~~~~~~~-~~~   88 (315)
                      ..+..+.+. +++.+++...++.|.+||..+++.+..+........++++++++++++. .++.|.+||..+..+. .+.
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            345677775 3455556666789999999999998888766778999999999766666 4899999999765543 444


Q ss_pred             cCC------ceEEEEEcCCCceEEEEc-CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC--------
Q psy9936          89 VLN------KVTRMEFLPYHFLLATAS-EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN--------  153 (315)
Q Consensus        89 ~~~------~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--------  153 (315)
                      ...      ....+++ .++.++++.. .++.|.++|+.+++.+..+.... ....++++|+|++++++..+        
T Consensus       123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~  200 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGY  200 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred             cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCcccc
Confidence            333      5667777 3444444443 48899999999998888776533 35678999999977776554        


Q ss_pred             --CeEEEEcCCCCcceeEeecc-cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE--ecc-CCCceeEEEcc-
Q psy9936         154 --GTVTMWSPTVQKPLASLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT--FRT-RTPINNLAFSQ-  226 (315)
Q Consensus       154 --~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~-~~~v~~~~~s~-  226 (315)
                        +.|.++|..+++....+... ...+..++|+|++++|+++..  .|.+||..++ +....  +.. ...+..++++| 
T Consensus       201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~-~~~~~~~~~~~~~~p~gi~vdp~  277 (328)
T 3dsm_A          201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD-RVPVRPFLEFRDTKYYGLTVNPN  277 (328)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS-SCCSSCSBCCCSSCEEEEEECTT
T ss_pred             CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC-ceeeeeeecCCCCceEEEEEcCC
Confidence              79999999998877666532 246789999999998887765  8999999887 44321  222 23578999999 


Q ss_pred             CCe-EEEE-----cCCEEEecCC
Q psy9936         227 RGL-LATS-----RGNIVEFLKP  243 (315)
Q Consensus       227 ~g~-~~~~-----~~~~i~~~~~  243 (315)
                      ++. +++.     .++.|..|++
T Consensus       278 ~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          278 NGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             TCCEEEEECTTSSSEEEEEEECT
T ss_pred             CCeEEEEcccccccCCEEEEECC
Confidence            454 4443     3677888775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1.6e-16  Score=147.63  Aligned_cols=230  Identities=9%  Similarity=0.004  Sum_probs=161.2

Q ss_pred             cEEEEEEcCCCCEEEEEcCCC-----eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCe------------
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRG-----HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDW------------   73 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~------------   73 (315)
                      .+..++|||||++||.+..++     .|++||+.+++..........+..++|+|||+.|+.+. ++.            
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            477899999999998765433     89999999998765433223367899999999888765 433            


Q ss_pred             ----EEEEeCCCCE---EEEee---cCCceEEEEEcCCCceEEEEcC-----CCeEEEEEccC------Ce-EEEEeccC
Q psy9936          74 ----VYIYDNQGIE---LHCLK---VLNKVTRMEFLPYHFLLATASE-----EGYLSWLDTSI------GK-IVSDFSAK  131 (315)
Q Consensus        74 ----i~i~~~~~~~---~~~~~---~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~~  131 (315)
                          |++|++.+..   .....   +...+..+.|+|+|++|+.++.     +..|++||+.+      +. ....+..+
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence                9999995432   22222   2345789999999998887764     56899999986      43 34555556


Q ss_pred             CCCeEEEEEcCCCCEEEEEcC----CCeEEEEcCCCCc--ceeEeecccc--cEEEEEECCCCCEEEEeeCCCc--EEEE
Q psy9936         132 KGKLSVMTQNPYNACICLGHR----NGTVTMWSPTVQK--PLASLLCHKA--GIQSVAVNHTGTYMATSAGDSQ--LRIW  201 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~~~----d~~i~i~d~~~~~--~~~~~~~~~~--~i~~~~~sp~g~~l~~~~~d~~--i~iw  201 (315)
                      ...+.. .|+|+|+.|+..+.    .+.|.+||+.++.  ....+..|..  .+..++|++++.++++...++.  |.+|
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence            555554 58899987766554    3479999998764  2345554543  6888999988888888888885  5666


Q ss_pred             EccCCCCCeeEeccCC-CceeEEEccCCe-EEE--Ec---CCEEEecCC
Q psy9936         202 DVRNLEGPLNTFRTRT-PINNLAFSQRGL-LAT--SR---GNIVEFLKP  243 (315)
Q Consensus       202 d~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~~--~~---~~~i~~~~~  243 (315)
                      ++.++ ..+..+..+. .+..+.++|++. ++.  ++   .+++..|++
T Consensus       365 ~~~~g-~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          365 DLATG-ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             ETTTC-CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             ECCCC-CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            77566 6666666554 478889999883 322  22   346666654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=9.2e-17  Score=137.20  Aligned_cols=220  Identities=11%  Similarity=0.078  Sum_probs=145.2

Q ss_pred             CCCCEEEEEc------CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-----------CCeEEEEeCCC-
Q psy9936          20 KNGRHLLLGG------KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-----------KDWVYIYDNQG-   81 (315)
Q Consensus        20 ~~~~~l~~~~------~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~i~~~~~-   81 (315)
                      ++++++++..      .|+.|++||..+++.+..+...... .++|+||+++++++.           ++.|.+||... 
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            3566666543      3679999999999988777643334 899999999888874           45799999854 


Q ss_pred             CEEEEeec-------CCceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCC-CEEEEE
Q psy9936          82 IELHCLKV-------LNKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYN-ACICLG  150 (315)
Q Consensus        82 ~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~-~~l~~~  150 (315)
                      +.+..+..       ......++++|+|++|+++..  +++|.+||+.+++.+.. +....  ...+.+.|++ ..+++.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEE
Confidence            44444432       235678999999999998864  57899999999988877 54321  1112233332 223333


Q ss_pred             cCCC------------------------------------------------eEEEEcCCCCcce--eEeec------cc
Q psy9936         151 HRNG------------------------------------------------TVTMWSPTVQKPL--ASLLC------HK  174 (315)
Q Consensus       151 ~~d~------------------------------------------------~i~i~d~~~~~~~--~~~~~------~~  174 (315)
                      +.||                                                .+.++|+......  ..+..      +.
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~  249 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK  249 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence            3333                                                3444444322110  11100      00


Q ss_pred             ----ccEEEEEECCCCCEEEEeeC-----------CCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe-EEEEcCCEE
Q psy9936         175 ----AGIQSVAVNHTGTYMATSAG-----------DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL-LATSRGNIV  238 (315)
Q Consensus       175 ----~~i~~~~~sp~g~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~~~~~i  238 (315)
                          .....++|+|++..++++..           .+.|.+||+.+. +.+..+..+. +.+++|+|||. +.++.+++|
T Consensus       250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v  327 (361)
T 2oiz_A          250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD-ALSMTIDQQRNLMLTLDGGNV  327 (361)
T ss_dssp             TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT-CCEEEEETTTTEEEEECSSCE
T ss_pred             ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC-eeEEEECCCCCEEEEeCCCeE
Confidence                01112689999887776543           347999999999 8999998888 99999999994 444445889


Q ss_pred             EecCCC
Q psy9936         239 EFLKPP  244 (315)
Q Consensus       239 ~~~~~~  244 (315)
                      .+|++.
T Consensus       328 ~v~D~~  333 (361)
T 2oiz_A          328 NVYDIS  333 (361)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            998863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=1.4e-16  Score=134.49  Aligned_cols=195  Identities=9%  Similarity=0.057  Sum_probs=154.3

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-EEEEec----------CCCceeEEEEee-cCcEEEEEe--CCeEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-LACEMN----------VMEEVYDIKWLH-LETMFAVAQ--KDWVYI   76 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~--~~~i~i   76 (315)
                      ..+..++++|+|+++++...++.|++|+..... .+..+.          +......++++| ++.++++.+  ++.|++
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            367899999999988888888999999976542 344442          223588999999 788888874  789999


Q ss_pred             EeCCCCEEEEeecC-----------CceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcC
Q psy9936          77 YDNQGIELHCLKVL-----------NKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNP  142 (315)
Q Consensus        77 ~~~~~~~~~~~~~~-----------~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p  142 (315)
                      |+.++..+..+...           ..+..++++|+ +.++++...++.|.+||..+++.+..+.  .+...+..++++|
T Consensus       171 ~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          171 FSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP  250 (329)
T ss_dssp             ECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred             EcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC
Confidence            99888777665422           34889999998 7777888889999999999898888774  3556788999999


Q ss_pred             CCCEEEEE-------cCCCeEEEEcCCCCcceeEee---cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         143 YNACICLG-------HRNGTVTMWSPTVQKPLASLL---CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       143 ~~~~l~~~-------~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                       +..+++.       ..+..|.+||+.+++.+..+.   ++...+..++++|+|.++++...++.|++|++...
T Consensus       251 -g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          251 -GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             -TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             -CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence             4333333       344589999999998888773   56677899999999988888888999999998753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=7.7e-17  Score=138.98  Aligned_cols=208  Identities=9%  Similarity=0.005  Sum_probs=141.7

Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeE-------------------EEEeecCcEEEEE------
Q psy9936          16 MNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYD-------------------IKWLHLETMFAVA------   69 (315)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~l~~~------   69 (315)
                      +.|+|||++|++++.++.|++|++.+++...... +......                   +.|+|+++.++..      
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            6799999999999888899999999887665554 2221112                   3455665554432      


Q ss_pred             eCCeEEEEeCCCCEEEE-eecCCceEEEEEcC-CCceEEEEcCC------CeEEEEEccCCeEEEEeccCC--CCeEEEE
Q psy9936          70 QKDWVYIYDNQGIELHC-LKVLNKVTRMEFLP-YHFLLATASEE------GYLSWLDTSIGKIVSDFSAKK--GKLSVMT  139 (315)
Q Consensus        70 ~~~~i~i~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~--~~v~~~~  139 (315)
                      .+..|++||+.+..... ..+...+..+.|+| ++..|+..+.+      ..|.+||+..+... .+..+.  ..+..++
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF  244 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE
T ss_pred             CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE
Confidence            24589999996544433 44557789999999 78767665543      36888998765433 333332  2477899


Q ss_pred             EcCCCCEEEEEcCC-----CeEEEEcCCCCcceeEeecccccEEEEEECC-CCCEEEEee----------------CCCc
Q psy9936         140 QNPYNACICLGHRN-----GTVTMWSPTVQKPLASLLCHKAGIQSVAVNH-TGTYMATSA----------------GDSQ  197 (315)
Q Consensus       140 ~~p~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~~~----------------~d~~  197 (315)
                      |+|+|++|+.++.+     +.|.+||+.+++...... ... .. +.|+| +|+++++++                .+..
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence            99999987776543     459999999876433222 222 23 89999 999888765                2467


Q ss_pred             EEEEEccCCCCCeeEeccCCC------------ceeEEEccCCe
Q psy9936         198 LRIWDVRNLEGPLNTFRTRTP------------INNLAFSQRGL  229 (315)
Q Consensus       198 i~iwd~~~~~~~~~~~~~~~~------------v~~~~~s~~g~  229 (315)
                      |++||+.++ ... .+..+..            +..++|+|||.
T Consensus       322 i~~~d~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~  363 (396)
T 3c5m_A          322 LYVLNTKAK-SAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD  363 (396)
T ss_dssp             EEEEETTTT-BCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             EEEEecccC-ceE-EccCCCCccccccccccCCCCCceEccCCC
Confidence            999999876 443 3333222            56789999994

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.78  E-value=6.2e-17  Score=137.28  Aligned_cols=211  Identities=9%  Similarity=0.044  Sum_probs=145.7

Q ss_pred             CcEEEEEEcCCCCEEEEEc---------CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC----C--eEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGG---------KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK----D--WVY   75 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~---------~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~--~i~   75 (315)
                      ..+...++  ||++++...         .++.|++|++.+++....    ..+..++|+|||+.|+...+    +  .|+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            45677778  899887642         256799999998875433    56788999999998887652    3  488


Q ss_pred             EEeCCCCEEEEee-cCCceEEEEEcCCCceEEEEcCC---------------------------CeEEEEEccCCeEEEE
Q psy9936          76 IYDNQGIELHCLK-VLNKVTRMEFLPYHFLLATASEE---------------------------GYLSWLDTSIGKIVSD  127 (315)
Q Consensus        76 i~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~~~~  127 (315)
                      +|++.+.....+. ... +..+.|+|+|+.|+.++.+                           ..|.+||+.+++.+..
T Consensus        89 ~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~  167 (347)
T 2gop_A           89 VADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE  167 (347)
T ss_dssp             EEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred             EEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee
Confidence            8888766554443 334 9999999999988887632                           5699999998876455


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEcCCC---------eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCC---
Q psy9936         128 FSAKKGKLSVMTQNPYNACICLGHRNG---------TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD---  195 (315)
Q Consensus       128 ~~~~~~~v~~~~~~p~~~~l~~~~~d~---------~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---  195 (315)
                      +.. . .+..++|+|+| +++++..+.         .|.++|  +++ ...+..+ ..+..+  +|+|++|+.++.+   
T Consensus       168 l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          168 FEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             ecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence            544 3 78889999999 777775432         455555  444 3444444 555544  9999998887754   


Q ss_pred             -----CcEEEEEccCCCCCeeEeccC-CCcee-EEEccCCeEE-EEcCCEEEec
Q psy9936         196 -----SQLRIWDVRNLEGPLNTFRTR-TPINN-LAFSQRGLLA-TSRGNIVEFL  241 (315)
Q Consensus       196 -----~~i~iwd~~~~~~~~~~~~~~-~~v~~-~~~s~~g~~~-~~~~~~i~~~  241 (315)
                           ..|.+||  ++ ........+ ..+.. +.|+ ||.++ ++.++.+++|
T Consensus       239 ~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~  288 (347)
T 2gop_A          239 YMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY  288 (347)
T ss_dssp             CCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE
T ss_pred             CccccceEEEEC--CC-ceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE
Confidence                 3577777  44 433333333 34675 8999 88433 3457777777

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.77  E-value=4.6e-16  Score=129.98  Aligned_cols=230  Identities=12%  Similarity=0.083  Sum_probs=165.6

Q ss_pred             CCcEEEEEEcCCCCEEEE-------EcCCCeEEEEEccCceEEEEec-----CCCceeEEEEeec-CcEEEEEeCCeEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLL-------GGKRGHVAAFDWVRKTLACEMN-----VMEEVYDIKWLHL-ETMFAVAQKDWVYI   76 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~-------~~~dg~i~v~~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~l~~~~~~~i~i   76 (315)
                      -..+.+++|+++|.++++       +..++.|.+|+..+++......     +...+.++++.++ ++++++...+.|.+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            345689999999988777       5667889999988877654332     3356889999999 88777776668999


Q ss_pred             EeCCCCEEEEe-ec------CCceEEEEEcCCCceEEEEcCC---------------CeEEEEEccCCeEEEEeccCCCC
Q psy9936          77 YDNQGIELHCL-KV------LNKVTRMEFLPYHFLLATASEE---------------GYLSWLDTSIGKIVSDFSAKKGK  134 (315)
Q Consensus        77 ~~~~~~~~~~~-~~------~~~v~~~~~~~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~~~~~  134 (315)
                      ||.+ .....+ ..      ...+.+++++++|+++++...+               +.|..||.. ++..... .+...
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~  173 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQF  173 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESS
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCC
Confidence            9988 444433 21      1347899999999877776654               567788766 5543322 23345


Q ss_pred             eEEEEEc----CCCCEEEEE-cCCCeEEEEcCC-CCc-----ceeEeeccc-ccEEEEEECCCCCEEEEeeCCCcEEEEE
Q psy9936         135 LSVMTQN----PYNACICLG-HRNGTVTMWSPT-VQK-----PLASLLCHK-AGIQSVAVNHTGTYMATSAGDSQLRIWD  202 (315)
Q Consensus       135 v~~~~~~----p~~~~l~~~-~~d~~i~i~d~~-~~~-----~~~~~~~~~-~~i~~~~~sp~g~~l~~~~~d~~i~iwd  202 (315)
                      ...++|+    |+++.++.+ ..++.|.+||+. +++     ....+..+. ..+..++++++|+++++...++.|.+||
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence            6889999    999765544 567899999976 343     222333333 5678999999999888888888999999


Q ss_pred             ccCCCCCeeEeccC-CCceeEEEccCCe-EEEEc--CCEEEecCC
Q psy9936         203 VRNLEGPLNTFRTR-TPINNLAFSQRGL-LATSR--GNIVEFLKP  243 (315)
Q Consensus       203 ~~~~~~~~~~~~~~-~~v~~~~~s~~g~-~~~~~--~~~i~~~~~  243 (315)
                      ..++ +.+..+..+ ..+.+++|+|+|. +.++.  ++.|..+++
T Consensus       254 ~~~g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          254 PDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCC-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            9866 666666655 4689999999995 44443  357877664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=1.4e-15  Score=128.22  Aligned_cols=213  Identities=7%  Similarity=0.002  Sum_probs=157.9

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCC------ceeEEEEeecCcEEEEEe--CCeEEEEe
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME------EVYDIKWLHLETMFAVAQ--KDWVYIYD   78 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~--~~~i~i~~   78 (315)
                      +.....+..++++++++.+++...++.|.+||..+++....+....      ....+++ .+++++++..  ++.|.++|
T Consensus        80 i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           80 ITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             EECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEE
T ss_pred             cCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEE
Confidence            3334678899999998555554478999999999999887776443      5667777 5666666653  78999999


Q ss_pred             CCCCE-EEEeecCCceEEEEEcCCCceEEEEcCC----------CeEEEEEccCCeEEEEeccC-CCCeEEEEEcCCCCE
Q psy9936          79 NQGIE-LHCLKVLNKVTRMEFLPYHFLLATASEE----------GYLSWLDTSIGKIVSDFSAK-KGKLSVMTQNPYNAC  146 (315)
Q Consensus        79 ~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~p~~~~  146 (315)
                      +.+.. ...+........+.++|+|++++++..+          +.|.++|..+++....+... ...+..++++|+++.
T Consensus       159 ~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          159 TETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             TTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             CCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence            96544 4445555566789999999877776554          78999999999877766543 236889999999998


Q ss_pred             EEEEcCCCeEEEEcCCCCcceeE--eecccccEEEEEECC-CCCEEEEe----eCCCcEEEEEccCCCCCeeEeccCCCc
Q psy9936         147 ICLGHRNGTVTMWSPTVQKPLAS--LLCHKAGIQSVAVNH-TGTYMATS----AGDSQLRIWDVRNLEGPLNTFRTRTPI  219 (315)
Q Consensus       147 l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~sp-~g~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~v  219 (315)
                      |+++..  .|.+||+.+++....  +......+..++++| ++.++++.    ..++.|.+||.. + +.+..+......
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~~i~~G~~P  314 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLIDEFYVGIIP  314 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEEEEEEEESE
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEEEEEeccCc
Confidence            888765  899999988775321  222245788999999 56666666    578899999998 6 888888766556


Q ss_pred             eeEEE
Q psy9936         220 NNLAF  224 (315)
Q Consensus       220 ~~~~~  224 (315)
                      ..++|
T Consensus       315 ~~~~~  319 (328)
T 3dsm_A          315 GAFCW  319 (328)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            66666

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.75  E-value=8e-15  Score=131.75  Aligned_cols=236  Identities=16%  Similarity=0.188  Sum_probs=167.9

Q ss_pred             eeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEcc--CceEEEEecCCCceeEEEEe----ecCcEEEEEe--CCeEEEEe
Q psy9936           7 LDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWV--RKTLACEMNVMEEVYDIKWL----HLETMFAVAQ--KDWVYIYD   78 (315)
Q Consensus         7 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~--~~~i~i~~   78 (315)
                      +.....+..+.|||||+++++++.++.|.+||+.  +++.+..+........++|+    |||++++++.  ++.|.++|
T Consensus       193 i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             EeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence            4445567899999999999999999999999995  88888777765667899999    6999888876  68999999


Q ss_pred             CCC-CEEEEeec--------------------------------------------------------CCceEEEEEcCC
Q psy9936          79 NQG-IELHCLKV--------------------------------------------------------LNKVTRMEFLPY  101 (315)
Q Consensus        79 ~~~-~~~~~~~~--------------------------------------------------------~~~v~~~~~~~~  101 (315)
                      ..+ +.+..+..                                                        ......+.|+|+
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd  352 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGS  352 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTT
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCC
Confidence            743 22222110                                                        011235679999


Q ss_pred             CceEEEEc-CCCeEEEEEccCCeEEEEecc-----CCCCeEEEEEcCCCC-EEEEEc-CCCeEEEEcCCC-------Ccc
Q psy9936         102 HFLLATAS-EEGYLSWLDTSIGKIVSDFSA-----KKGKLSVMTQNPYNA-CICLGH-RNGTVTMWSPTV-------QKP  166 (315)
Q Consensus       102 ~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~~p~~~-~l~~~~-~d~~i~i~d~~~-------~~~  166 (315)
                      +++++++. .++.|.++|+.+++.+..+..     |.+.-..+ ++|++. .++++. .++.|.++|..+       .+.
T Consensus       353 gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv  431 (567)
T 1qks_A          353 HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI  431 (567)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence            99876654 578899999999988776654     33222222 588754 445553 468999999987       566


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeC-------CCcEEEEEccCC-----CCCeeEecc---------CCCceeEEEc
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAG-------DSQLRIWDVRNL-----EGPLNTFRT---------RTPINNLAFS  225 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~-------d~~i~iwd~~~~-----~~~~~~~~~---------~~~v~~~~~s  225 (315)
                      +.++......-..+..+|++++|.+...       .++|.++|+.+.     ...+..+..         ...+..+.|+
T Consensus       432 v~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (567)
T 1qks_A          432 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFN  511 (567)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEEC
T ss_pred             EEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeEC
Confidence            7777754444345788999999888663       358999999876     333344431         2358899999


Q ss_pred             cCCe--EEEEc-----CCEEEecCC
Q psy9936         226 QRGL--LATSR-----GNIVEFLKP  243 (315)
Q Consensus       226 ~~g~--~~~~~-----~~~i~~~~~  243 (315)
                      |+|.  +++..     ++.|.+++.
T Consensus       512 ~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          512 KDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             TTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CCCCEEEEEeecCCCCCCcEEEEEC
Confidence            9993  44432     578888776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.75  E-value=4.5e-14  Score=116.79  Aligned_cols=227  Identities=11%  Similarity=0.027  Sum_probs=167.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-c-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-N-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~   86 (315)
                      ...+.+++++++|..+++...++.|.+||.. ++..... . ....+.++++.+++.++++.. ++.|..|+.++.. ..
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~   91 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII-KE   91 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE-EE
Confidence            4689999999999988777667899999988 5543322 2 346789999999999888776 6889999987543 33


Q ss_pred             ee---cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          87 LK---VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        87 ~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      +.   ....+.++++.+++.++++...++.|..||. +++.... ...+...+..++++|+|+++++...++.|..||. 
T Consensus        92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-  169 (299)
T 2z2n_A           92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-  169 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred             EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence            32   3357899999999988887777889999998 5554332 2334456899999999988887777889999999 


Q ss_pred             CCcceeE-eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCeE-EEE-cCC
Q psy9936         163 VQKPLAS-LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLL-ATS-RGN  236 (315)
Q Consensus       163 ~~~~~~~-~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~-~~~-~~~  236 (315)
                      +++.... +..+...+.+++++++|.++++...++.|.+||. ++ . +..+...   ..+.+++++++|.+ ++. .++
T Consensus       170 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  246 (299)
T 2z2n_A          170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG-E-ITEFKIPTPNARPHAITAGAGIDLWFTEWGAN  246 (299)
T ss_dssp             TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-C-EEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC-c-EEEEECCCCCCCceeEEECCCCCEEEeccCCc
Confidence            6654332 2233456889999999997777767889999999 55 4 3333222   35889999999864 444 467


Q ss_pred             EEEecCC
Q psy9936         237 IVEFLKP  243 (315)
Q Consensus       237 ~i~~~~~  243 (315)
                      .|..+++
T Consensus       247 ~i~~~d~  253 (299)
T 2z2n_A          247 KIGRLTS  253 (299)
T ss_dssp             EEEEEET
T ss_pred             eEEEECC
Confidence            7877665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=8.7e-15  Score=131.51  Aligned_cols=220  Identities=12%  Similarity=0.040  Sum_probs=162.9

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeC---CCCEEEEeecCCceEE
Q psy9936          20 KNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDN---QGIELHCLKVLNKVTR   95 (315)
Q Consensus        20 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~---~~~~~~~~~~~~~v~~   95 (315)
                      |.+.++++...++.|.++|..+++.+..+.....+..+.|+|||+++.+++ ++.|.+||+   +...+..+........
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence            444567777888999999999999998888666788999999999888776 789999999   4455556665666789


Q ss_pred             EEEc----CCCceEEEEcC-CCeEEEEEccCCeEEEEeccC-----------CCCeEEEEEcCCCCE-EEEEcCCCeEEE
Q psy9936          96 MEFL----PYHFLLATASE-EGYLSWLDTSIGKIVSDFSAK-----------KGKLSVMTQNPYNAC-ICLGHRNGTVTM  158 (315)
Q Consensus        96 ~~~~----~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-----------~~~v~~~~~~p~~~~-l~~~~~d~~i~i  158 (315)
                      ++|+    |+|+++++++. ++++.++|..+.+.+..+...           ...+..+..++++.. ++....+|.|.+
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            9999    69998887765 589999999999888776421           125788888988664 455567799999


Q ss_pred             EcCCCCcce--eEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEecc-CC---CceeEE-EccCC-e
Q psy9936         159 WSPTVQKPL--ASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRT-RT---PINNLA-FSQRG-L  229 (315)
Q Consensus       159 ~d~~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~---~v~~~~-~s~~g-~  229 (315)
                      +|..+.+.+  ..+. .......+.|+|+|+++++++ .++.|.++|+.++ +.+..+.. ..   +-..+. ++|++ .
T Consensus       325 vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~~~p~~g~  402 (567)
T 1qks_A          325 VDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANFVHPTFGP  402 (567)
T ss_dssp             EETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred             EecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCccceeeECCCCCc
Confidence            998865432  2222 334567889999999887665 5778999999998 77766655 22   123444 47774 4


Q ss_pred             -EEEE--cCCEEEec
Q psy9936         230 -LATS--RGNIVEFL  241 (315)
Q Consensus       230 -~~~~--~~~~i~~~  241 (315)
                       ++++  ++++|.++
T Consensus       403 v~~t~~~g~~~Vsvi  417 (567)
T 1qks_A          403 VWATSHMGDDSVALI  417 (567)
T ss_dssp             EEEEEBSSSSEEEEE
T ss_pred             EEEeCCCCCCeEEEe
Confidence             3444  35777754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.74  E-value=7.9e-15  Score=121.82  Aligned_cols=219  Identities=10%  Similarity=0.018  Sum_probs=155.5

Q ss_pred             cEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecC
Q psy9936          12 GIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVL   90 (315)
Q Consensus        12 ~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~   90 (315)
                      -..+..|+|++. ++++...++.|+.||..++.. ..+.....+.+++++++|+++++ .++.|.+||..+.....+...
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEEEEEEEC
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-ECCeEEEEECCCCcEEEEEec
Confidence            446889999654 556666788999999988765 34556678999999999996555 477899999976655544321


Q ss_pred             ------CceEEEEEcCCCceEEEEcC-----------CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcC
Q psy9936          91 ------NKVTRMEFLPYHFLLATASE-----------EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHR  152 (315)
Q Consensus        91 ------~~v~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~  152 (315)
                            ..+..++++|+|+++++...           .+.|..++.. ++... +..+....+.++|+|+++.|+ +.+.
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCC
Confidence                  34788999999986665422           2334444433 33322 223334578999999998665 4556


Q ss_pred             CCeEEEEcC--CCCcc-----eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEE
Q psy9936         153 NGTVTMWSP--TVQKP-----LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAF  224 (315)
Q Consensus       153 d~~i~i~d~--~~~~~-----~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~  224 (315)
                      ++.|.+||+  .++..     +..+..+...+..++++++|++.++....+.|.+||..++ +.+..+..+. .+++++|
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~p~~~~t~~~f  248 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKLPVDKTTSCCF  248 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEECSSSBEEEEEE
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEECCCCCceEEEE
Confidence            789999987  44532     2222334467789999999998888878888999999988 8888887764 6899999


Q ss_pred             c-cCC--eEEEEcC
Q psy9936         225 S-QRG--LLATSRG  235 (315)
Q Consensus       225 s-~~g--~~~~~~~  235 (315)
                      . |++  +++++..
T Consensus       249 ~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          249 GGKNYSEMYVTCAR  262 (297)
T ss_dssp             ESGGGCEEEEEEBC
T ss_pred             eCCCCCEEEEEcCC
Confidence            8 776  4566553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=8.2e-15  Score=121.54  Aligned_cols=192  Identities=11%  Similarity=0.101  Sum_probs=143.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC-----CCceeEEEEeecCcEEEEEe--------------
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV-----MEEVYDIKWLHLETMFAVAQ--------------   70 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~--------------   70 (315)
                      ...+.+++++|+|+++++...++.|.+||..+++.......     ...+.++++.|+|+++++..              
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~  147 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE  147 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence            45688999999999888877778999999988876544321     23467899999999888632              


Q ss_pred             ----CCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc-CCeE---EEEeccCCCCeEEEEEcC
Q psy9936          71 ----KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS-IGKI---VSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        71 ----~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~---~~~~~~~~~~v~~~~~~p  142 (315)
                          .+.|+.++..+..............++|+|+++.+++.+.++.|.+|++. +++.   ...+..+...+..+++++
T Consensus       148 ~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~  227 (296)
T 3e5z_A          148 MELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA  227 (296)
T ss_dssp             CCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT
T ss_pred             ccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC
Confidence                34677777764443334455678899999999988777888999999986 4554   233333455577899999


Q ss_pred             CCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEE-CCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         143 YNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV-NHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       143 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +|+++++.  ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +.-++..+.
T Consensus       228 ~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          228 GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            99876665  7899999987 777777776666 899999 68999888888764 445555553

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.71  E-value=3.2e-14  Score=123.39  Aligned_cols=226  Identities=9%  Similarity=0.021  Sum_probs=157.2

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CC--eEEEEeCCC-CEEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KD--WVYIYDNQG-IELHC   86 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~--~i~i~~~~~-~~~~~   86 (315)
                      ..+..++|+|+++++++...++.|++||..++............. ++|++++..|+++. ++  .|++++..+ .....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            367899999999988887778899999999888766655434444 99999998877775 33  799998843 22233


Q ss_pred             e----e-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE----eccCCCCe-E-EEEEcCC-CCEEEEEcCCC
Q psy9936          87 L----K-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD----FSAKKGKL-S-VMTQNPY-NACICLGHRNG  154 (315)
Q Consensus        87 ~----~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~v-~-~~~~~p~-~~~l~~~~~d~  154 (315)
                      +    . ....+.+++++|++..|+++..++.|+.||..++.....    ..++...- . .++|+|+ +.++++...++
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            3    2 335678899999555555577788999999987653322    22222222 3 8999995 66666667788


Q ss_pred             eEEEEcCCCCcceeEeeccc---------------ccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccC--
Q psy9936         155 TVTMWSPTVQKPLASLLCHK---------------AGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTR--  216 (315)
Q Consensus       155 ~i~i~d~~~~~~~~~~~~~~---------------~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~--  216 (315)
                      .|+.|+....  +..+.++.               .....++++|+|+++++-+ .++.|+.|++.++ . +..+..+  
T Consensus       290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~~g~~~  365 (409)
T 3hrp_A          290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTVAGQVD  365 (409)
T ss_dssp             EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEEEECTT
T ss_pred             EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEEeCCCC
Confidence            9999998743  33333332               3478999999999777777 7889999997765 3 3333222  


Q ss_pred             --------------CCceeEEEccCCeEEEE--cCCEEEec
Q psy9936         217 --------------TPINNLAFSQRGLLATS--RGNIVEFL  241 (315)
Q Consensus       217 --------------~~v~~~~~s~~g~~~~~--~~~~i~~~  241 (315)
                                    ..+..++++|+|.+.++  .++.|+.+
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence                          23688999999854443  35566543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.70  E-value=7.6e-13  Score=109.42  Aligned_cols=227  Identities=11%  Similarity=0.026  Sum_probs=165.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE-ec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE-MN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~   86 (315)
                      ...+.+++++++|..+++...++.|.+|+.. ++.... +. ....+..+++.+++.++++.. ++.|..+|..+.. ..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~-~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF-TE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe-EE
Confidence            4688999999999988877778899999987 554432 22 235688999999998887765 6789999988543 33


Q ss_pred             ee---cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC
Q psy9936          87 LK---VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS-DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT  162 (315)
Q Consensus        87 ~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~  162 (315)
                      +.   ....+.++++.+++.++++...++.|..||.. ++... .+......+..+++.|+|+++++...++.|..||. 
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  174 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-  174 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence            32   23678999999999888877778899999987 65442 23334456899999999997777766889999998 


Q ss_pred             CCcceeEee--cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE-ecc-CCCceeEEEccCCeE-EEEc-CC
Q psy9936         163 VQKPLASLL--CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT-FRT-RTPINNLAFSQRGLL-ATSR-GN  236 (315)
Q Consensus       163 ~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~s~~g~~-~~~~-~~  236 (315)
                      +++... +.  .+...+..++++++|.++++....+.|.+||. ++ ..... ... ...+.+++++++|.+ ++.. ++
T Consensus       175 ~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  251 (300)
T 2qc5_A          175 TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG-EISEYDIPTPNARPHAITAGKNSEIWFTEWGAN  251 (300)
T ss_dssp             TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC-cEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence            454332 32  33456889999999987777767778999998 43 33222 221 235789999999954 4443 57


Q ss_pred             EEEecCC
Q psy9936         237 IVEFLKP  243 (315)
Q Consensus       237 ~i~~~~~  243 (315)
                      .|..+++
T Consensus       252 ~i~~~~~  258 (300)
T 2qc5_A          252 QIGRITN  258 (300)
T ss_dssp             EEEEECT
T ss_pred             eEEEECC
Confidence            7877665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=1.6e-15  Score=140.62  Aligned_cols=227  Identities=10%  Similarity=-0.014  Sum_probs=152.4

Q ss_pred             cEEEEEEcCCCCEEEEE-----cCCCeEEEEEccCceEEEEecCCCce--eEEEEeecCcEEEEEe-CCe----------
Q psy9936          12 GIYRMNYTKNGRHLLLG-----GKRGHVAAFDWVRKTLACEMNVMEEV--YDIKWLHLETMFAVAQ-KDW----------   73 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~-----~~dg~i~v~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-~~~----------   73 (315)
                      .+.+++|||||++||.+     +.+..|++||+.+++.+. ..+...+  ..++|+|||+.|+.+. +..          
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            57899999999999843     344689999999988641 1122222  6899999999888775 443          


Q ss_pred             ---EEEEeCCCCE---EEEee---cCCceEEEEEcCCCceEEEEcCCC----eEEEEEccCCeEEEEeccCCCCeEEEEE
Q psy9936          74 ---VYIYDNQGIE---LHCLK---VLNKVTRMEFLPYHFLLATASEEG----YLSWLDTSIGKIVSDFSAKKGKLSVMTQ  140 (315)
Q Consensus        74 ---i~i~~~~~~~---~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~  140 (315)
                         |++|++.+..   .....   +...+..+.|+|+|++|+.++.++    .|.+++..++.. ..+..+...+....+
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~  279 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA  279 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe
Confidence               9999995432   22222   225688999999999988877665    677777655543 344445555566666


Q ss_pred             cCCCCEEEEEc---CCCeEEEEcCCCCcc--eeEeecc--cccEEEEEECCCCCEEEEeeCCCcEEEEEcc-CCCCCeeE
Q psy9936         141 NPYNACICLGH---RNGTVTMWSPTVQKP--LASLLCH--KAGIQSVAVNHTGTYMATSAGDSQLRIWDVR-NLEGPLNT  212 (315)
Q Consensus       141 ~p~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~-~~~~~~~~  212 (315)
                       ++|.+++.+.   .++.|.+||+.++..  ...+..+  ...+..++|+ ++.++++...|+..+||.+. .+ .....
T Consensus       280 -~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-~~~~~  356 (695)
T 2bkl_A          280 -WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG-KPVRT  356 (695)
T ss_dssp             -ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-CEEEE
T ss_pred             -cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-CeeEE
Confidence             5666444444   257999999987753  2333333  4567888988 67788888999988888765 34 55555


Q ss_pred             eccC--CCceeEEEccCCe-EE--EEc---CCEEEecCC
Q psy9936         213 FRTR--TPINNLAFSQRGL-LA--TSR---GNIVEFLKP  243 (315)
Q Consensus       213 ~~~~--~~v~~~~~s~~g~-~~--~~~---~~~i~~~~~  243 (315)
                      +..+  ..+..++++|++. ++  .++   .++|..|++
T Consensus       357 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          357 VQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             CCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             ecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            5544  2477888999883 22  222   246766654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=3.8e-13  Score=111.15  Aligned_cols=226  Identities=7%  Similarity=-0.001  Sum_probs=162.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEE-EEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA-CEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~   86 (315)
                      ...+.+++++++|.++++...++.|..|+.. ++.. ..+. ....+..+++.+++.++++.. ++.|..||.++.....
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~  134 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREY  134 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence            4678999999999988877778889999976 3332 2222 345688999999998887765 6799999995443322


Q ss_pred             e-e-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          87 L-K-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        87 ~-~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      . . ....+..+++.+++.++++...++.|..||. +++.... +..+...+..++++++|+++++...++.|.+||. +
T Consensus       135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  212 (299)
T 2z2n_A          135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S  212 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C
Confidence            2 1 2356899999999988777777889999998 6665432 3334456889999999997777777889999999 6


Q ss_pred             CcceeE-eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCe-EEEEcCCEE
Q psy9936         164 QKPLAS-LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGL-LATSRGNIV  238 (315)
Q Consensus       164 ~~~~~~-~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~-~~~~~~~~i  238 (315)
                      ++.... +..+...+.+++++++|+++++...++.|..||. ++ . +..+...   ..+.++++ ++|. ++++..+.+
T Consensus       213 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l  288 (299)
T 2z2n_A          213 GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN-I-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKI  288 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT-E-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEE
T ss_pred             CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC-c-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcE
Confidence            653321 2234467899999999997776667788999998 33 3 3333222   35889999 8885 455456666


Q ss_pred             EecC
Q psy9936         239 EFLK  242 (315)
Q Consensus       239 ~~~~  242 (315)
                      ..++
T Consensus       289 ~~~~  292 (299)
T 2z2n_A          289 GKLT  292 (299)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.68  E-value=1.7e-13  Score=115.24  Aligned_cols=216  Identities=11%  Similarity=0.055  Sum_probs=151.0

Q ss_pred             EEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecC-
Q psy9936          13 IYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVL-   90 (315)
Q Consensus        13 v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~-   90 (315)
                      ..+.+|+|++. ++++...++.|..|+..+++.. .+.....+.++.|+++|++++++ .+.|.+||..+..+..+... 
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~  128 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELE  128 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCC
Confidence            46889999755 5566667789999999887653 34455679999999999988766 45599999865554443321 


Q ss_pred             -----CceEEEEEcCCCceEEEEcC------CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEE
Q psy9936          91 -----NKVTRMEFLPYHFLLATASE------EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTM  158 (315)
Q Consensus        91 -----~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i  158 (315)
                           ..+..+.++|+|+++++...      .+.|..++  +++... +..+......++|+|+|+.++.+ ..++.|.+
T Consensus       129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence                 35789999999987665432      24566666  455433 22233457889999999876554 55789999


Q ss_pred             EcCC--CC-cc-----eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEc-cCC
Q psy9936         159 WSPT--VQ-KP-----LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFS-QRG  228 (315)
Q Consensus       159 ~d~~--~~-~~-----~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s-~~g  228 (315)
                      ||+.  ++ ..     +..+......+..++++++|.++++...++.|.+||. ++ +.+..+..+. .+++++|+ |++
T Consensus       206 ~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          206 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTTCPAFIGPDA  283 (326)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEEEEEEESTTS
T ss_pred             EEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC-CEEEEEECCCCCcEEEEEecCCC
Confidence            9986  55 32     1222223456788999999998877777788999998 45 6666676655 58999998 886


Q ss_pred             --eEEEEcC
Q psy9936         229 --LLATSRG  235 (315)
Q Consensus       229 --~~~~~~~  235 (315)
                        +++++..
T Consensus       284 ~~L~vt~~~  292 (326)
T 2ghs_A          284 SRLLVTSAR  292 (326)
T ss_dssp             CEEEEEEBC
T ss_pred             CEEEEEecC
Confidence              3444443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=2.3e-14  Score=133.21  Aligned_cols=221  Identities=10%  Similarity=0.003  Sum_probs=148.9

Q ss_pred             CCCCEEEEEcCC-----CeEEEEEccCceEEEEec-------CCCceeEEEEeecCcEEEEEe--CC----eEEEEeCCC
Q psy9936          20 KNGRHLLLGGKR-----GHVAAFDWVRKTLACEMN-------VMEEVYDIKWLHLETMFAVAQ--KD----WVYIYDNQG   81 (315)
Q Consensus        20 ~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~--~~----~i~i~~~~~   81 (315)
                      |+|++++....+     +.+.+.+..+++....+.       +...+..++|||||++|+.+.  +|    .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            899988765432     245556655555433332       112478899999999998764  23    899999977


Q ss_pred             CEEEEee-cCCceEEEEEcCCCceEEEEcCCCe----------------EEEEEccCCe----EEEEeccCCCCeEEEEE
Q psy9936          82 IELHCLK-VLNKVTRMEFLPYHFLLATASEEGY----------------LSWLDTSIGK----IVSDFSAKKGKLSVMTQ  140 (315)
Q Consensus        82 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~----------------i~~~d~~~~~----~~~~~~~~~~~v~~~~~  140 (315)
                      ....... ....+..++|+|||+.|+.++.++.                |++|++.+++    .+.....+...+..+.|
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            6554422 2233678999999999998887765                9999998775    22222334556789999


Q ss_pred             cCCCCEEEEEcC-----CCeEEEEcCCC------Cc-ceeEeecccccEEEEEECCCCCEEEEeeCC----CcEEEEEcc
Q psy9936         141 NPYNACICLGHR-----NGTVTMWSPTV------QK-PLASLLCHKAGIQSVAVNHTGTYMATSAGD----SQLRIWDVR  204 (315)
Q Consensus       141 ~p~~~~l~~~~~-----d~~i~i~d~~~------~~-~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----~~i~iwd~~  204 (315)
                      +|||++|+.++.     +..|.+||+.+      +. ....+..+...+.. .|+|+|..|+..+..    +.|.+||+.
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~  319 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT  319 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            999998887654     57899999986      43 45666666666554 588999988776653    359999998


Q ss_pred             CCCC--CeeEeccCC---CceeEEEccCCeEEEE--cCCE--EEecC
Q psy9936         205 NLEG--PLNTFRTRT---PINNLAFSQRGLLATS--RGNI--VEFLK  242 (315)
Q Consensus       205 ~~~~--~~~~~~~~~---~v~~~~~s~~g~~~~~--~~~~--i~~~~  242 (315)
                      ++ .  ....+..+.   .+.+++|++++.++++  .++.  |..|+
T Consensus       320 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          320 DP-EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             SC-CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             CC-CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence            76 3  234443332   4778999977754433  3553  44444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.68  E-value=7.6e-14  Score=116.32  Aligned_cols=221  Identities=10%  Similarity=0.008  Sum_probs=152.4

Q ss_pred             CCcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      .....+..|+|+|+ ++++...++.|..|+. +++..........+..+++.++|+++++.. ++.|.+|+.++......
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~  122 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLV  122 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEE
Confidence            44567899999998 5667777889999997 455433333556789999999999877765 47899999875533222


Q ss_pred             ec-----CCceEEEEEcCCCceEEE----EcC-------------CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCC
Q psy9936          88 KV-----LNKVTRMEFLPYHFLLAT----ASE-------------EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        88 ~~-----~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~  145 (315)
                      ..     ...+..++++|+|.++++    |..             .+.|..||..+++.....  .......++|+|+++
T Consensus       123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~  200 (305)
T 3dr2_A          123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQ  200 (305)
T ss_dssp             CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSS
T ss_pred             eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCC
Confidence            21     134678999999987776    332             256888887666544333  334578899999999


Q ss_pred             EEEEEcCC------CeEEEEcCCCCcceeE---e-ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         146 CICLGHRN------GTVTMWSPTVQKPLAS---L-LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       146 ~l~~~~~d------~~i~i~d~~~~~~~~~---~-~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      .|+.+...      +.|.+||+..+. +..   + ....+.+..++++++|++.++ +.+ .|.+|+.. + +.+..+..
T Consensus       201 ~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~-g-~~~~~~~~  275 (305)
T 3dr2_A          201 TLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD-G-QLLGHIPT  275 (305)
T ss_dssp             EEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECTT-S-CEEEEEEC
T ss_pred             EEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECCC-C-CEEEEEEC
Confidence            87777654      789999987543 211   1 112334567899999995544 444 49999985 4 67777776


Q ss_pred             CCCceeEEEccCC-eEEEEcCCEE
Q psy9936         216 RTPINNLAFSQRG-LLATSRGNIV  238 (315)
Q Consensus       216 ~~~v~~~~~s~~g-~~~~~~~~~i  238 (315)
                      +..+.+++|+|++ .+.++..+.+
T Consensus       276 ~~~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          276 PGTASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             SSCCCEEEECTTSCEEEEEETTEE
T ss_pred             CCceeEEEEeCCCCEEEEEcCCeE
Confidence            6678999999887 3433433444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=1.9e-14  Score=117.53  Aligned_cols=195  Identities=8%  Similarity=-0.027  Sum_probs=144.7

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-cCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe-
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-NVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL-   87 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~-   87 (315)
                      ..+.+++++++|+++++.. ++.|.+||..+....... .....+..+++.++|+++++.. ++.|.+|+..+...... 
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~  145 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  145 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence            4678899999999766665 889999998765443222 1235688999999998777664 68899998644322222 


Q ss_pred             -ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          88 -KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        88 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                       .....+.+++++++|+++++...++.|.+||............+...+..++++++|.++++...++.|.+||......
T Consensus       146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence             2224678899999998777777788999999886654433333336689999999998777777788999999876543


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      ......+...+.+++++|+|+++++...++.|+++++...
T Consensus       226 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          226 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            3222223357899999999998888889999999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.67  E-value=6.5e-15  Score=136.54  Aligned_cols=219  Identities=8%  Similarity=-0.032  Sum_probs=144.6

Q ss_pred             cCCCCEEEEEcCCC-----eEEEEEccCceEEEEec-------CCCceeEEEEeecCcEEEEEe------CCeEEEEeCC
Q psy9936          19 TKNGRHLLLGGKRG-----HVAAFDWVRKTLACEMN-------VMEEVYDIKWLHLETMFAVAQ------KDWVYIYDNQ   80 (315)
Q Consensus        19 s~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~------~~~i~i~~~~   80 (315)
                      +|+|++++....++     .|.+.+..+++....+.       +...+..++|||||++|+.+.      +..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            48899888765433     35555655555444433       222588999999999998653      2479999997


Q ss_pred             CCEEEEeecCCce--EEEEEcCCCceEEEEcCCCe-------------EEEEEccCCe----EEEEeccCCCCeEEEEEc
Q psy9936          81 GIELHCLKVLNKV--TRMEFLPYHFLLATASEEGY-------------LSWLDTSIGK----IVSDFSAKKGKLSVMTQN  141 (315)
Q Consensus        81 ~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~-------------i~~~d~~~~~----~~~~~~~~~~~v~~~~~~  141 (315)
                      +.......+...+  ..++|+|||+.|+.++.+..             |++|++.++.    .+.....+...+..+.|+
T Consensus       156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence            6554311122222  68999999999999888765             9999998775    333333455678899999


Q ss_pred             CCCCEEEEEcCCC----eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee---CCCcEEEEEccCCCCC---ee
Q psy9936         142 PYNACICLGHRNG----TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA---GDSQLRIWDVRNLEGP---LN  211 (315)
Q Consensus       142 p~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~---~d~~i~iwd~~~~~~~---~~  211 (315)
                      |||++|+.++.++    .|.+||..+++ ...+..+...+....| |+|.+++.+.   .++.|.+||+.++ ..   ..
T Consensus       236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~-~~~~~~~  312 (695)
T 2bkl_A          236 RDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKP-ARASWKE  312 (695)
T ss_dssp             TTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBC-SGGGCEE
T ss_pred             CCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCC-CccCCeE
Confidence            9999888777655    78888776554 4455556666667667 6666444443   2578999999876 43   33


Q ss_pred             EeccC-C-CceeEEEccCCeEEE--EcCCEEEec
Q psy9936         212 TFRTR-T-PINNLAFSQRGLLAT--SRGNIVEFL  241 (315)
Q Consensus       212 ~~~~~-~-~v~~~~~s~~g~~~~--~~~~~i~~~  241 (315)
                      .+..+ . .+.+++|+ ++.+++  ..++..++|
T Consensus       313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence            33332 2 37788888 453333  346655544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.2e-13  Score=113.39  Aligned_cols=207  Identities=7%  Similarity=0.006  Sum_probs=159.2

Q ss_pred             EEeeCC--CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCC--CceeEEEEeecCcEEEEEe--CCeEEEEe
Q psy9936           5 FDLDLQ--FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM--EEVYDIKWLHLETMFAVAQ--KDWVYIYD   78 (315)
Q Consensus         5 ~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~--~~~i~i~~   78 (315)
                      .++...  ..+.+++++|+|++|++  .++.|+.||. +++.+..+...  ..+.++.+.++|+++++..  ++.+..++
T Consensus        29 w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd  105 (276)
T 3no2_A           29 WEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVN  105 (276)
T ss_dssp             EEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEEC
T ss_pred             EEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEe
Confidence            344442  36889999999998883  4678999998 88888888743  4688899999999998876  46788888


Q ss_pred             CCCCEEEEeecC-------CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc
Q psy9936          79 NQGIELHCLKVL-------NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        79 ~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                      .+++.+..+...       .....+++.++|+++++...++.|..||.. |+.+..+..+ ..+.++...++|++++++.
T Consensus       106 ~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~  183 (276)
T 3no2_A          106 MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG  183 (276)
T ss_dssp             TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB
T ss_pred             CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC
Confidence            888877665421       234556789999999999999999999988 9999888764 3456678889999999998


Q ss_pred             CCCeEEEEcCCCCcceeEeeccc------ccEEEEEECCCCCEEEEeeCC--------CcEEEEEcc-CCCCCeeEeccC
Q psy9936         152 RNGTVTMWSPTVQKPLASLLCHK------AGIQSVAVNHTGTYMATSAGD--------SQLRIWDVR-NLEGPLNTFRTR  216 (315)
Q Consensus       152 ~d~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~sp~g~~l~~~~~d--------~~i~iwd~~-~~~~~~~~~~~~  216 (315)
                      .++.|..+|..+++.+.++..+.      ..+..+...++|.++++....        +..+++.+. ++ +.+..+...
T Consensus       184 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g-~~~W~~~~~  262 (276)
T 3no2_A          184 DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG-KVVWQLNDK  262 (276)
T ss_dssp             TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS-BEEEEECCT
T ss_pred             CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC-CEEEEecCc
Confidence            88899999999999998886432      237889999999988887422        244666663 44 666666544


Q ss_pred             C
Q psy9936         217 T  217 (315)
Q Consensus       217 ~  217 (315)
                      .
T Consensus       263 ~  263 (276)
T 3no2_A          263 V  263 (276)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.66  E-value=6.2e-15  Score=125.50  Aligned_cols=168  Identities=8%  Similarity=0.047  Sum_probs=131.1

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-----------EEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-----------LACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~   80 (315)
                      ++..+++++...++++|+.++ +.+|+++..+           ......+.. |+.++|  |+.+|+++.++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence            588999999999999999885 7779876443           223344566 999999  8999999999999999984


Q ss_pred             CC--EEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          81 GI--ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        81 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      ..  .-....+..++.++.+.+..  +++++.||.+.+||+.++....    +...|++++|||+|  ++.|..||.+++
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            32  11223344667887776553  8888999999999999877654    33579999999999  678889999999


Q ss_pred             EcCCCCcc--eeEe------e---cccccEEEEEECCCCCEEEE
Q psy9936         159 WSPTVQKP--LASL------L---CHKAGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       159 ~d~~~~~~--~~~~------~---~~~~~i~~~~~sp~g~~l~~  191 (315)
                      |+......  ..++      .   +|...|.+|.|.+++.++++
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99887664  4455      2   36789999999999998876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=2.3e-14  Score=133.80  Aligned_cols=228  Identities=10%  Similarity=0.024  Sum_probs=152.3

Q ss_pred             cEEEEEEcCCCCEEEEEcCC-----CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CC-------------
Q psy9936          12 GIYRMNYTKNGRHLLLGGKR-----GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KD-------------   72 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~-------------   72 (315)
                      .+..++|||||++||.++.+     ..|++||+.+++.+........+..++|+|| +.|+.+. ++             
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            57789999999999876543     4699999999987654222222367899999 8777664 32             


Q ss_pred             -eEEEEeCCCCE---EEEeecC---CceEEEEEcCCCceEEEEcCCC-----eEEEEEccCC--eEEEEeccCCCCeEEE
Q psy9936          73 -WVYIYDNQGIE---LHCLKVL---NKVTRMEFLPYHFLLATASEEG-----YLSWLDTSIG--KIVSDFSAKKGKLSVM  138 (315)
Q Consensus        73 -~i~i~~~~~~~---~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~~v~~~  138 (315)
                       .|++|++.+..   .......   ..+..+.|+|||++|+..+.++     .|++||+.++  +....+..+.......
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF  322 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence             38999984322   2222222   2588999999999888776543     7999999877  3134455455445444


Q ss_pred             EEcCCCCEEEEEcC----CCeEEEEcCCCC--cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEcc-CCCCCee
Q psy9936         139 TQNPYNACICLGHR----NGTVTMWSPTVQ--KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR-NLEGPLN  211 (315)
Q Consensus       139 ~~~p~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~-~~~~~~~  211 (315)
                      . +|+|+.|+..+.    ++.|.+||+.++  .....+..+...+..++|+ ++.++++...|+..+||.+. .+ ....
T Consensus       323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-~~~~  399 (741)
T 1yr2_A          323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG-KPAG  399 (741)
T ss_dssp             E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-CEEE
T ss_pred             E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-Ccee
Confidence            3 488988877665    456999999874  2333344445567778887 56677888889887777665 34 5555


Q ss_pred             EeccC--CCceeEEEccCCe-EE--EEc---CCEEEecCC
Q psy9936         212 TFRTR--TPINNLAFSQRGL-LA--TSR---GNIVEFLKP  243 (315)
Q Consensus       212 ~~~~~--~~v~~~~~s~~g~-~~--~~~---~~~i~~~~~  243 (315)
                      .+..+  ..+..+.++|++. ++  .++   .+++..|++
T Consensus       400 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          400 AVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             ECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             eccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            55543  3478899999873 22  222   245666654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.66  E-value=5.8e-15  Score=125.66  Aligned_cols=168  Identities=9%  Similarity=-0.001  Sum_probs=131.8

Q ss_pred             ceeEEEEeecCcEEEEEeCCeEEEEeCCC------------CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc
Q psy9936          53 EVYDIKWLHLETMFAVAQKDWVYIYDNQG------------IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS  120 (315)
Q Consensus        53 ~v~~~~~~~~~~~l~~~~~~~i~i~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  120 (315)
                      +++.+++++...++++++...+.+|+++.            .......... |+.++|  ++++|+++ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            68999999999999999877888898521            1113344556 999999  88999998 88999999998


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       121 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                      +.........|...+..+.+.+..  +++++.||.|.+||+.++....    +...|++++|||+|  ++.|..||.+++
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            766555566677778888776543  8888999999999999776542    45689999999999  788999999999


Q ss_pred             EEccCCCCC--eeEe------c----cCCCceeEEEccCCeEEEE
Q psy9936         201 WDVRNLEGP--LNTF------R----TRTPINNLAFSQRGLLATS  233 (315)
Q Consensus       201 wd~~~~~~~--~~~~------~----~~~~v~~~~~s~~g~~~~~  233 (315)
                      |+..+. ..  ...+      .    ....|.++.|.+++.++++
T Consensus       187 ~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          187 FAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCCc-cccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            998876 43  4445      2    1235999999999976665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=4.7e-13  Score=111.62  Aligned_cols=194  Identities=9%  Similarity=0.063  Sum_probs=142.1

Q ss_pred             CcEEEEEEcCC-CCEEEEEcCCCeEEEEEccCceEEEE-ecC-----CCceeEEEEeecCcEEEEEe-C-----------
Q psy9936          11 FGIYRMNYTKN-GRHLLLGGKRGHVAAFDWVRKTLACE-MNV-----MEEVYDIKWLHLETMFAVAQ-K-----------   71 (315)
Q Consensus        11 ~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~-~-----------   71 (315)
                      ..+.+++++++ |+++++.. .+.|.+||.. ++.... ...     ...+.++++.++|+++++.. +           
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence            56889999999 76555544 4479999988 765443 221     13478999999998887765 3           


Q ss_pred             ----CeEEEEeCCCCEEEEeecCCceEEEEEc----CCCceEEEE-cCCCeEEEEEcc-CCe-----EEEEeccCC-CCe
Q psy9936          72 ----DWVYIYDNQGIELHCLKVLNKVTRMEFL----PYHFLLATA-SEEGYLSWLDTS-IGK-----IVSDFSAKK-GKL  135 (315)
Q Consensus        72 ----~~i~i~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~~~d~~-~~~-----~~~~~~~~~-~~v  135 (315)
                          +.|..++..+..............++|+    |+++.++.+ ..++.|.+||+. +++     ....+..+. ..+
T Consensus       149 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T 1pjx_A          149 QEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             SSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             cCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCC
Confidence                5688888775443334444567889999    999655544 567899999986 454     223333343 568


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEE-eeCCCcEEEEEccCC
Q psy9936         136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAT-SAGDSQLRIWDVRNL  206 (315)
Q Consensus       136 ~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~-~~~d~~i~iwd~~~~  206 (315)
                      ..++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+|++|++ ...++.|..|++...
T Consensus       229 ~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            88999999998888777889999999888877777766678999999999995554 455678999998753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=4.4e-12  Score=104.79  Aligned_cols=226  Identities=8%  Similarity=0.013  Sum_probs=160.6

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE-ec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEE-
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE-MN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHC-   86 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~-   86 (315)
                      ..+.+++++++|.++++...++.|..||.. ++.... .. ....+.++++.+++.++++.. ++.|..++.++..... 
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~  140 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYD  140 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEcc
Confidence            678999999999888877667889999987 554322 22 235688999999998887776 6799999988544322 


Q ss_pred             ee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936          87 LK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        87 ~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      +. ....+.++++.++++++++...++.|..||. +++.... ...+...+..++++++|+++++....+.|.+||. ++
T Consensus       141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  218 (300)
T 2qc5_A          141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG  218 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence            22 2367899999999997777666789999998 5554432 2234456889999999987777777788999998 44


Q ss_pred             cceeE-eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCeEEEEcCCEEEe
Q psy9936         165 KPLAS-LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLLATSRGNIVEF  240 (315)
Q Consensus       165 ~~~~~-~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~~~~~~~~i~~  240 (315)
                      +.... +..+...+.+++++++|+++++...++.|..||.. + . +..+...   ..+.+++++++|.+.++..+.|..
T Consensus       219 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~i~~  295 (300)
T 2qc5_A          219 EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-N-T-IQEYQLQTENAEPHGITFGKDGSVWFALKCKIGK  295 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S-C-EEEEECCSTTCCCCCEEECTTSCEEEECSSEEEE
T ss_pred             cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-C-c-EEEEECCccCCccceeEeCCCCCEEEEccCceEE
Confidence            43322 22345678899999999977776667899999983 3 3 2233222   358899999999654443235544


Q ss_pred             cC
Q psy9936         241 LK  242 (315)
Q Consensus       241 ~~  242 (315)
                      ++
T Consensus       296 ~~  297 (300)
T 2qc5_A          296 LN  297 (300)
T ss_dssp             EE
T ss_pred             eC
Confidence            43

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.63  E-value=1.1e-12  Score=112.22  Aligned_cols=220  Identities=12%  Similarity=0.023  Sum_probs=144.6

Q ss_pred             EEcCCCCEEEEEcC--CC---eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-----------CCeEEEEeCC
Q psy9936          17 NYTKNGRHLLLGGK--RG---HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-----------KDWVYIYDNQ   80 (315)
Q Consensus        17 ~~s~~~~~l~~~~~--dg---~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~i~~~~   80 (315)
                      ...|+++++++...  ..   .|.++|..+++.+..+...... .+.++|||+++.++.           ++.|.+||..
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            44578887776653  22   7899999999988877744334 999999999988874           4679999995


Q ss_pred             C-CEEEEeecC--------CceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCC-EE
Q psy9936          81 G-IELHCLKVL--------NKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNA-CI  147 (315)
Q Consensus        81 ~-~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~-~l  147 (315)
                      + ..+..+...        .....+.|+|+|++|++++.  ++.|.++| .+++.+.. +.... .   +.+.|+++ .+
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~---~~~~~~~~~~~  180 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-C---YHIHPGAPSTF  180 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-e---EEEEeCCCceE
Confidence            4 333333221        23568999999999998874  47899999 99988877 54321 1   12222221 22


Q ss_pred             EEEcCCC-----------------------------------------------eEEEEcCCCCc--ceeEeec------
Q psy9936         148 CLGHRNG-----------------------------------------------TVTMWSPTVQK--PLASLLC------  172 (315)
Q Consensus       148 ~~~~~d~-----------------------------------------------~i~i~d~~~~~--~~~~~~~------  172 (315)
                      ++.+.||                                               .+.+.|+.+..  .+..+..      
T Consensus       181 ~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~  260 (373)
T 2mad_H          181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK  260 (373)
T ss_pred             EEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence            2223333                                               34444443221  1111110      


Q ss_pred             ----ccccEEEEEECCCCCEEEEeeC----------CCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEE--c
Q psy9936         173 ----HKAGIQSVAVNHTGTYMATSAG----------DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATS--R  234 (315)
Q Consensus       173 ----~~~~i~~~~~sp~g~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~--~  234 (315)
                          .......+.++|++..++++..          ++.|.++|+.+. +.+..+.......+++|+|||.  +.++  .
T Consensus       261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~  339 (373)
T 2mad_H          261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLGHDVDAISVAQDGGPDLYALSAG  339 (373)
T ss_pred             ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECCCCcCeEEECCCCCeEEEEEcCC
Confidence                0112233778999887777643          357999999998 8888888777799999999995  3333  3


Q ss_pred             CCEEEecCC
Q psy9936         235 GNIVEFLKP  243 (315)
Q Consensus       235 ~~~i~~~~~  243 (315)
                      ++.|.+++.
T Consensus       340 ~~~V~ViD~  348 (373)
T 2mad_H          340 TEVLHIYDA  348 (373)
T ss_pred             CCeEEEEEC
Confidence            788988886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.62  E-value=9e-13  Score=109.36  Aligned_cols=183  Identities=13%  Similarity=0.068  Sum_probs=134.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC-----CCceeEEEEeecCcEEEEEeC------------C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV-----MEEVYDIKWLHLETMFAVAQK------------D   72 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~------------~   72 (315)
                      ...+.+++++|+|+++++.  ++.|.+||..+++.......     ...++++++.|+|+++++...            +
T Consensus        53 ~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence            5678999999999965543  45799999988876443322     234788999999998776531            3


Q ss_pred             eEEEEeCCCCEEEEeecCCceEEEEEcCCCceEE-EEcCCCeEEEEEc--cCCeE-----EEEeccCCCCeEEEEEcCCC
Q psy9936          73 WVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLA-TASEEGYLSWLDT--SIGKI-----VSDFSAKKGKLSVMTQNPYN  144 (315)
Q Consensus        73 ~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~--~~~~~-----~~~~~~~~~~v~~~~~~p~~  144 (315)
                      .|+.++..+............+.++|+|+++.|+ +.+.++.|.+||+  .++..     ...+..+.+.+..++++++|
T Consensus       131 ~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          131 ALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG  210 (297)
T ss_dssp             EEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred             EEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence            4666666555444444556678999999998664 5566789999997  45543     22233334568899999999


Q ss_pred             CEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEEC-CCCCEEEEeeC
Q psy9936         145 ACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVN-HTGTYMATSAG  194 (315)
Q Consensus       145 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~  194 (315)
                      ++.++....+.|..||..+++.+..+..+...+++++|. |+++.|++++.
T Consensus       211 ~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          211 KLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            888777778899999999999888888776789999998 88876665543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=3.1e-12  Score=109.44  Aligned_cols=192  Identities=15%  Similarity=0.073  Sum_probs=128.6

Q ss_pred             EEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEecCC--------CceeEEEEeecCcEEEEEe---CCe
Q psy9936          15 RMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMNVM--------EEVYDIKWLHLETMFAVAQ---KDW   73 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~   73 (315)
                      .+++||||++++++.          .++.|.+||..+.+....+...        .....+.|+|||++|++++   ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999988875          3578999999998887766532        2355799999999998875   368


Q ss_pred             EEEEeCCCCEEE-E-eecCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEE-------------------------
Q psy9936          74 VYIYDNQGIELH-C-LKVLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIV-------------------------  125 (315)
Q Consensus        74 i~i~~~~~~~~~-~-~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~-------------------------  125 (315)
                      |.++| .+..+. . +....   ++.+.|++ ..+++.+.||.+.++|. +++.+                         
T Consensus       150 v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence            99999 765433 3 22211   12222332 22233333444444443 22211                         


Q ss_pred             -------------------------EEecc----------CCCCeEEEEEcCCCCEEEEEcC----------CCeEEEEc
Q psy9936         126 -------------------------SDFSA----------KKGKLSVMTQNPYNACICLGHR----------NGTVTMWS  160 (315)
Q Consensus       126 -------------------------~~~~~----------~~~~v~~~~~~p~~~~l~~~~~----------d~~i~i~d  160 (315)
                                               ..+..          .......++++|+++.++++..          .+.|.++|
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence                                     11110          0112333778999887777543          35899999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCC-EEEEee-CCCcEEEEEccCCCCCeeEe
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGT-YMATSA-GDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~-~d~~i~iwd~~~~~~~~~~~  213 (315)
                      +.+++.+.++. ......+++|+|||+ +++++. .++.|.+||+.++ +.+..+
T Consensus       305 ~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~i  357 (373)
T 2mad_H          305 GLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQST  357 (373)
T ss_pred             CCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEeee
Confidence            99999988886 344678999999999 777776 5899999999998 777773

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.58  E-value=1.6e-12  Score=110.29  Aligned_cols=225  Identities=13%  Similarity=0.057  Sum_probs=153.2

Q ss_pred             EEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEecCC--------CceeEEEEeecCcEEEEEe---CCe
Q psy9936          15 RMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMNVM--------EEVYDIKWLHLETMFAVAQ---KDW   73 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~   73 (315)
                      .+++||||++++++.          .++.|.+||..+++....+...        .....+.|+|||+++.++.   ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887764          3568999999999988877532        2467799999999888775   478


Q ss_pred             EEEEeCCCCEE-EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC-CeEEEEeccC----CCCeE-EEEE-cCCCC
Q psy9936          74 VYIYDNQGIEL-HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI-GKIVSDFSAK----KGKLS-VMTQ-NPYNA  145 (315)
Q Consensus        74 i~i~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~----~~~v~-~~~~-~p~~~  145 (315)
                      |.++|+....+ ..+...+.  ...+......+++.+.||++.+.++.+ ++.......+    ..++. ...| .++|+
T Consensus       162 VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~  239 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  239 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             EEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence            99999965543 44433321  122322345667778888888888875 5543221111    11221 2355 46776


Q ss_pred             EEEEEcCCCeEEEEcCCCCc--ceeEee----------cccccEEEEEECCCCCEEEEeeC----------CCcEEEEEc
Q psy9936         146 CICLGHRNGTVTMWSPTVQK--PLASLL----------CHKAGIQSVAVNHTGTYMATSAG----------DSQLRIWDV  203 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~--~~~~~~----------~~~~~i~~~~~sp~g~~l~~~~~----------d~~i~iwd~  203 (315)
                      +++ .+.+|.|.+.|+.++.  .+..+.          ........++++|+++.++....          .+.|.++|+
T Consensus       240 ~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~  318 (386)
T 3sjl_D          240 LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  318 (386)
T ss_dssp             EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence            555 5558999999997664  222222          01223335778999888777643          247999999


Q ss_pred             cCCCCCeeEeccCCCceeEEEccCCe--EEEE-c-CCEEEecCC
Q psy9936         204 RNLEGPLNTFRTRTPINNLAFSQRGL--LATS-R-GNIVEFLKP  243 (315)
Q Consensus       204 ~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~-~-~~~i~~~~~  243 (315)
                      .+. +.+..+....++++++++||+.  +.++ . +++|.+++.
T Consensus       319 ~t~-kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          319 KTG-ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             TTC-CEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             CCC-eEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            999 8999988877899999999983  4443 3 788988776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=1.5e-12  Score=110.34  Aligned_cols=221  Identities=10%  Similarity=0.069  Sum_probs=147.3

Q ss_pred             CcEEEEEEcCCCCEEEEEc--CCCeEEEEEccCceEEEEec--------CCCceeEEEEeecCcEEEEEe------CCeE
Q psy9936          11 FGIYRMNYTKNGRHLLLGG--KRGHVAAFDWVRKTLACEMN--------VMEEVYDIKWLHLETMFAVAQ------KDWV   74 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~------~~~i   74 (315)
                      ..+..++++|+|+.+++..  .++.++||.+.+++.. .+.        +...+..+++.++++++++..      +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5789999999999888853  2342555555455543 221        235689999999998777653      4789


Q ss_pred             EEEeCCCCE-EEEeecC-------CceEEEEEcCCCceE-EEEc---CCCeEEEEEccCCeEEEEeccCC----------
Q psy9936          75 YIYDNQGIE-LHCLKVL-------NKVTRMEFLPYHFLL-ATAS---EEGYLSWLDTSIGKIVSDFSAKK----------  132 (315)
Q Consensus        75 ~i~~~~~~~-~~~~~~~-------~~v~~~~~~~~~~~l-~~~~---~d~~i~~~d~~~~~~~~~~~~~~----------  132 (315)
                      .+||+.+.. +..+...       ..+..+++++++..+ ++..   .++.|.+||+.+++....+..|.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999996544 4444321       346889999865444 4444   57889999998887666554321          


Q ss_pred             -------------------CCeEEEEEcCCCCEEEEEcCCC-eEEEEcCC---CCc-----cee--EeecccccEEEEEE
Q psy9936         133 -------------------GKLSVMTQNPYNACICLGHRNG-TVTMWSPT---VQK-----PLA--SLLCHKAGIQSVAV  182 (315)
Q Consensus       133 -------------------~~v~~~~~~p~~~~l~~~~~d~-~i~i~d~~---~~~-----~~~--~~~~~~~~i~~~~~  182 (315)
                                         ..+..++|+|+|+.|+++...+ .+..++..   .+.     ...  ...++......+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                               2368899999999888876655 55555532   111     011  11234445667999


Q ss_pred             CCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--CCceeEEEccCCeEEEE
Q psy9936         183 NHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--TPINNLAFSQRGLLATS  233 (315)
Q Consensus       183 sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~~~~  233 (315)
                      +++|.++++...++.|.+||..++ +........  ..+.+++|+++|.+.++
T Consensus       256 d~~G~l~va~~~~~~V~~~d~~~G-~~~~~~~~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITSADR-AYKLLVTDEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEETTTT-EEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred             CCCCCEEEEccCCCeEEEEECCCC-CEEEEEECCceecCCeeEECCCCcEEEE
Confidence            999999999888999999998555 432222222  24789999999854443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.55  E-value=6.3e-13  Score=123.11  Aligned_cols=226  Identities=11%  Similarity=0.079  Sum_probs=146.8

Q ss_pred             cEEEEEEcCCCCEEEEEc-----CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CC-------------
Q psy9936          12 GIYRMNYTKNGRHLLLGG-----KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KD-------------   72 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~-----~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~-------------   72 (315)
                      .+..++|||||++||.+.     ....|++||+.+++.+...........++|+ |++.|+.+. +.             
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~  208 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH  208 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence            578889999999998532     2357999999999865432111113678999 998877765 42             


Q ss_pred             eEEEEeCCCCE---EEEeec----CCceEEEEEcCCCceEEEEcC----CCeEEEEEccCCe-EEEEeccCCCCeEEEEE
Q psy9936          73 WVYIYDNQGIE---LHCLKV----LNKVTRMEFLPYHFLLATASE----EGYLSWLDTSIGK-IVSDFSAKKGKLSVMTQ  140 (315)
Q Consensus        73 ~i~i~~~~~~~---~~~~~~----~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~  140 (315)
                      .|++|++.+..   ......    .....++.|+|||++|+....    ...|+++|+.++. ....+..+....... +
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~  287 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-V  287 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-E
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-E
Confidence            49999984321   222222    234678999999998765432    3579999997763 344455555555544 6


Q ss_pred             cCCCCEEE-EEcC---CCeEEEEcCCCCcc--eeEeecccccEEEEEECCCCCEEEEeeCCC---cEEEEEccCCCCCee
Q psy9936         141 NPYNACIC-LGHR---NGTVTMWSPTVQKP--LASLLCHKAGIQSVAVNHTGTYMATSAGDS---QLRIWDVRNLEGPLN  211 (315)
Q Consensus       141 ~p~~~~l~-~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~---~i~iwd~~~~~~~~~  211 (315)
                      +++|..|+ +...   .+.|..+|+.++..  ...+..|...+.  .|+|++++|+....++   .|++|++.+.  ...
T Consensus       288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~~  363 (693)
T 3iuj_A          288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK--RVR  363 (693)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC--EEE
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC--eeE
Confidence            66666554 4433   36899999987654  345555666554  8999999888776544   6889998753  444


Q ss_pred             EeccCC--CceeEEEccCCe--EEEEcC----CEEEecCC
Q psy9936         212 TFRTRT--PINNLAFSQRGL--LATSRG----NIVEFLKP  243 (315)
Q Consensus       212 ~~~~~~--~v~~~~~s~~g~--~~~~~~----~~i~~~~~  243 (315)
                      .+..+.  .+..+.++|++.  ++...+    +++..+++
T Consensus       364 ~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          364 EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            444332  466777888772  333223    56666654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=1.3e-11  Score=103.75  Aligned_cols=182  Identities=10%  Similarity=0.032  Sum_probs=129.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC-----CCceeEEEEeecCcEEEEEeC-------CeEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV-----MEEVYDIKWLHLETMFAVAQK-------DWVYIY   77 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-------~~i~i~   77 (315)
                      ...+.+++++|+|+++++. .+ .|.+||..+++.......     ...++++.++|+|+++++..+       +.|+.+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            5678999999999877754 44 499999988876443322     135889999999998776542       467777


Q ss_pred             eCCCCEEEEeecCCceEEEEEcCCCceEEEE-cCCCeEEEEEcc--CC-e-----EEEEeccCCCCeEEEEEcCCCCEEE
Q psy9936          78 DNQGIELHCLKVLNKVTRMEFLPYHFLLATA-SEEGYLSWLDTS--IG-K-----IVSDFSAKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~--~~-~-----~~~~~~~~~~~v~~~~~~p~~~~l~  148 (315)
                      + ++..............++|+|+++.++.+ +.++.|.+||+.  ++ .     ....+......+..++++++|++.+
T Consensus       167 ~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          167 A-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             E-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             e-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence            7 44332222333567899999999866554 557899999986  55 3     2223333345678899999998777


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecccccEEEEEEC-CCCCEEEEeeCC
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVN-HTGTYMATSAGD  195 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~~~~~d  195 (315)
                      +...++.|.+||. +++.+..+..+...+++++|+ |++..|++++..
T Consensus       246 a~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          246 ARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            7666789999998 577777777666779999998 888776555433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.55  E-value=1.4e-12  Score=121.72  Aligned_cols=221  Identities=9%  Similarity=-0.012  Sum_probs=139.6

Q ss_pred             cCCCCEEEEEcCCC-----eEEEEEcc---CceEEEEec-------CCCceeEEEEeecCcEEEEEeC------CeEEEE
Q psy9936          19 TKNGRHLLLGGKRG-----HVAAFDWV---RKTLACEMN-------VMEEVYDIKWLHLETMFAVAQK------DWVYIY   77 (315)
Q Consensus        19 s~~~~~l~~~~~dg-----~i~v~~~~---~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~------~~i~i~   77 (315)
                      +|+|++++....++     .|.+.+..   +++....+.       +...+..++|||||++|+.+.+      ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48999888665433     34444544   444333322       1125788999999999987752      369999


Q ss_pred             eCCCCEEEEee-cCCceEEEEEcCCCceEEEEcCCCe--------------EEEEEccCCe----EEEEeccCCCCeEEE
Q psy9936          78 DNQGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGY--------------LSWLDTSIGK----IVSDFSAKKGKLSVM  138 (315)
Q Consensus        78 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~~~d~~~~~----~~~~~~~~~~~v~~~  138 (315)
                      |+.+....... ....+..++|+|| +.|+.++.++.              |++|++.++.    .+.....+...+..+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            99765543322 1122357899999 88888876543              8899987764    222222333458899


Q ss_pred             EEcCCCCEEEEEcCC-----CeEEEEcCCCC--cceeEeecccccEEEEEECCCCCEEEEeeCC----CcEEEEEccCCC
Q psy9936         139 TQNPYNACICLGHRN-----GTVTMWSPTVQ--KPLASLLCHKAGIQSVAVNHTGTYMATSAGD----SQLRIWDVRNLE  207 (315)
Q Consensus       139 ~~~p~~~~l~~~~~d-----~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d----~~i~iwd~~~~~  207 (315)
                      .|+|||++|+..+.+     ..|.+||+.++  ++...+..+...+.... +|+|..|+..+.+    +.|.+||+.++.
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~  352 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST  352 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence            999999988877644     38999999876  42455555555555553 4899988877754    459999987741


Q ss_pred             -CCeeEeccCC-CceeEEEccCCeEEE-EcCCEEEec
Q psy9936         208 -GPLNTFRTRT-PINNLAFSQRGLLAT-SRGNIVEFL  241 (315)
Q Consensus       208 -~~~~~~~~~~-~v~~~~~s~~g~~~~-~~~~~i~~~  241 (315)
                       .....+..+. .+.++.|+.+.+++. ..++..++|
T Consensus       353 ~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          353 PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEE
T ss_pred             cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEE
Confidence             2233333333 356777873333332 346655433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=1.3e-11  Score=102.63  Aligned_cols=206  Identities=12%  Similarity=0.043  Sum_probs=139.1

Q ss_pred             CCCceeEEEEeecCcEE-EEEe-CCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEE
Q psy9936          50 VMEEVYDIKWLHLETMF-AVAQ-KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD  127 (315)
Q Consensus        50 ~~~~v~~~~~~~~~~~l-~~~~-~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  127 (315)
                      .........|+|+++.| .+.. ++.|..|+.++...........+..++++++|+++++...++.|.+|+.. ++....
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~  121 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL  121 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence            44556789999999844 4443 68999999865533333345678999999999977776667889999986 553322


Q ss_pred             eccC----CCCeEEEEEcCCCCEEEE----EcC-------------CCeEEEEcCCCCcceeEeecccccEEEEEECCCC
Q psy9936         128 FSAK----KGKLSVMTQNPYNACICL----GHR-------------NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTG  186 (315)
Q Consensus       128 ~~~~----~~~v~~~~~~p~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g  186 (315)
                      ....    ...++.++++|+|+++++    |..             .+.|..||..+++.....  .....+.++|+|++
T Consensus       122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg  199 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDE  199 (305)
T ss_dssp             ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTS
T ss_pred             EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCC
Confidence            2111    124677999999998876    332             357888888777644332  34567889999999


Q ss_pred             CEEEEeeCC------CcEEEEEccCCCCCeeE---ec--cCCCceeEEEccCCeEEEEcCCEEEecCC------------
Q psy9936         187 TYMATSAGD------SQLRIWDVRNLEGPLNT---FR--TRTPINNLAFSQRGLLATSRGNIVEFLKP------------  243 (315)
Q Consensus       187 ~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~--~~~~v~~~~~s~~g~~~~~~~~~i~~~~~------------  243 (315)
                      +.|+.+...      +.|.+|++... . +..   +.  ....+..++++++|.+.++..+.|..|++            
T Consensus       200 ~~lyv~~~~~~~~~~~~i~~~~~~~~-~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~~~~~~~~~~  277 (305)
T 3dr2_A          200 QTLYVSQTPEQGHGSVEITAFAWRDG-A-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQLLGHIPTPG  277 (305)
T ss_dssp             SEEEEEECCC---CCCEEEEEEEETT-E-EEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTSCEEEEEECSS
T ss_pred             CEEEEEecCCcCCCCCEEEEEEecCC-C-ccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCCCEEEEEECCC
Confidence            988777665      68999998764 3 211   11  12236789999999755555556777766            


Q ss_pred             --CceeecccccccccCCc
Q psy9936         244 --PEINFEPRRKANKAGGS  260 (315)
Q Consensus       244 --~~~~~~~~~~~~~~~~~  260 (315)
                        ..++|+|+++.|..++.
T Consensus       278 ~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          278 TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             CCCEEEECTTSCEEEEEET
T ss_pred             ceeEEEEeCCCCEEEEEcC
Confidence              45667777665544433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.52  E-value=7.5e-12  Score=107.98  Aligned_cols=210  Identities=13%  Similarity=0.066  Sum_probs=139.1

Q ss_pred             EEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEecCC--------CceeEEEEeecCcEEEEEe---CCe
Q psy9936          15 RMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMNVM--------EEVYDIKWLHLETMFAVAQ---KDW   73 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~   73 (315)
                      .++++|||++++++.          .++.|.++|..+++....+...        .....+.|+|||+++.++.   ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888765          3578999999999988877532        3456899999999988875   468


Q ss_pred             EEEEeCCCCEE-EEeecCCc--------eEEEEEcCCCc-------------------------------------eEEE
Q psy9936          74 VYIYDNQGIEL-HCLKVLNK--------VTRMEFLPYHF-------------------------------------LLAT  107 (315)
Q Consensus        74 i~i~~~~~~~~-~~~~~~~~--------v~~~~~~~~~~-------------------------------------~l~~  107 (315)
                      |.+.|+....+ ..+.....        -..+.++++|.                                     .++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999965433 33332110        01123333333                                     3333


Q ss_pred             EcCCCeEEEEEccCCeEE--EEecc----------CCCCeEEEEEcCCCCEEEEEcC----------CCeEEEEcCCCCc
Q psy9936         108 ASEEGYLSWLDTSIGKIV--SDFSA----------KKGKLSVMTQNPYNACICLGHR----------NGTVTMWSPTVQK  165 (315)
Q Consensus       108 ~~~d~~i~~~d~~~~~~~--~~~~~----------~~~~v~~~~~~p~~~~l~~~~~----------d~~i~i~d~~~~~  165 (315)
                      .+..+.+.+.|+......  ..+..          .......++++|+++.+++...          ++.|.++|+.+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            334455556665433211  00100          0111223689999887776542          3589999999999


Q ss_pred             ceeEeecccccEEEEEECCCCC-EEEEee-CCCcEEEEEccCCCCCeeEe-ccCCCceeEEEccC
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGT-YMATSA-GDSQLRIWDVRNLEGPLNTF-RTRTPINNLAFSQR  227 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~-~l~~~~-~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~  227 (315)
                      .+.++.. .....+++|+|||+ +++++. .++.|.++|+.++ +.+..+ ....... +..+||
T Consensus       362 vv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI~~vG~~P~-~i~~~~  423 (426)
T 3c75_H          362 RINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSVDQLGRGPQ-IITTHD  423 (426)
T ss_dssp             EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCCSSSCC-EEECCC
T ss_pred             EEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEecCCCCCCc-EEEcCC
Confidence            9998873 33578999999999 888887 5899999999999 888887 3333222 555554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.52  E-value=3.5e-12  Score=110.02  Aligned_cols=222  Identities=10%  Similarity=0.013  Sum_probs=146.8

Q ss_pred             CCCCEEEEEcC-C----CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-----------CCeEEEEeCCC-C
Q psy9936          20 KNGRHLLLGGK-R----GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-----------KDWVYIYDNQG-I   82 (315)
Q Consensus        20 ~~~~~l~~~~~-d----g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~i~~~~~-~   82 (315)
                      |+++.+++... +    +.|.++|..+++.+..+...... .+.++||++.+.++.           ++.|.++|..+ +
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            56676655543 2    69999999999999988844334 899999998777664           46899999954 4


Q ss_pred             EEEEeecC--------CceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEEeccCCC-------CeEEEEEcCCCC
Q psy9936          83 ELHCLKVL--------NKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSDFSAKKG-------KLSVMTQNPYNA  145 (315)
Q Consensus        83 ~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~-------~v~~~~~~p~~~  145 (315)
                      .+..+...        .....+.++|||++++++..  ++.|.++|+.+++.+..+.....       .-..+.++++|+
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~  240 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGS  240 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSS
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCC
Confidence            44444321        34567899999999998864  57899999999988777653211       001133444444


Q ss_pred             EEEE-------------------------------------EcCCCeEEEEcCCCCcc--eeEeec----------cccc
Q psy9936         146 CICL-------------------------------------GHRNGTVTMWSPTVQKP--LASLLC----------HKAG  176 (315)
Q Consensus       146 ~l~~-------------------------------------~~~d~~i~i~d~~~~~~--~~~~~~----------~~~~  176 (315)
                      +++.                                     .+..+.+.+.|+.+...  +..+.-          ....
T Consensus       241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g  320 (426)
T 3c75_H          241 LARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG  320 (426)
T ss_dssp             EEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred             EEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence            3333                                     33334455555433211  011100          0011


Q ss_pred             EEEEEECCCCCEEEEeeC----------CCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEE--cCCEEEecC
Q psy9936         177 IQSVAVNHTGTYMATSAG----------DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATS--RGNIVEFLK  242 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~--~~~~i~~~~  242 (315)
                      ...++++|++..+++...          ++.|.++|+.+. +.+..+........+.|+|||.  +.++  .++.|.+++
T Consensus       321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-ERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-eEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            122689999887766542          357999999999 8999888777799999999985  3333  378999888


Q ss_pred             C
Q psy9936         243 P  243 (315)
Q Consensus       243 ~  243 (315)
                      .
T Consensus       400 ~  400 (426)
T 3c75_H          400 A  400 (426)
T ss_dssp             T
T ss_pred             C
Confidence            7

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.51  E-value=9.8e-13  Score=111.64  Aligned_cols=207  Identities=11%  Similarity=0.029  Sum_probs=139.9

Q ss_pred             EEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEecCC--------CceeEEEEeecCcEEEEEe---CCe
Q psy9936          15 RMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMNVM--------EEVYDIKWLHLETMFAVAQ---KDW   73 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~---~~~   73 (315)
                      .+.++|||++++++.          .++.|.+||+.+++....+...        .....+.++|||++++++.   .+.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888775          3678999999999999887632        3467899999999888875   357


Q ss_pred             EEE--EeCCCCEEEEeecCCc--------eEEEEE-------------------------------------cCCCceEE
Q psy9936          74 VYI--YDNQGIELHCLKVLNK--------VTRMEF-------------------------------------LPYHFLLA  106 (315)
Q Consensus        74 i~i--~~~~~~~~~~~~~~~~--------v~~~~~-------------------------------------~~~~~~l~  106 (315)
                      +.+  +|+..  +..+.....        -..+.+                                     ++++..++
T Consensus       149 v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~  226 (368)
T 1mda_H          149 AGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             EEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEE
Confidence            888  88744  222221100        000111                                     22222333


Q ss_pred             EEcCCCeEEEEEccCCe--EEEEecc-------C---CCCeEEEEEcCCCCEEEEEcC---------CCeEEEEcCCCCc
Q psy9936         107 TASEEGYLSWLDTSIGK--IVSDFSA-------K---KGKLSVMTQNPYNACICLGHR---------NGTVTMWSPTVQK  165 (315)
Q Consensus       107 ~~~~d~~i~~~d~~~~~--~~~~~~~-------~---~~~v~~~~~~p~~~~l~~~~~---------d~~i~i~d~~~~~  165 (315)
                      ..+. +.+.+.|+..+.  .+..+..       +   ......++++|+++.++++..         ++.+.++|+.+.+
T Consensus       227 ~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~  305 (368)
T 1mda_H          227 WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ  305 (368)
T ss_dssp             ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred             EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence            3333 566666765322  2222211       0   011122689999998876533         2356699999999


Q ss_pred             ceeEeecccccEEEEEECCCCC-EEEEee-CCCcEEEEEccCCCCCeeEeccCCCceeEEEcc
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGT-YMATSA-GDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQ  226 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~-~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  226 (315)
                      .+..+... .....++|+|||+ .++++. .++.|.++|+.++ +.+..+........+++.+
T Consensus       306 vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          306 TSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSCCCEEECCC
T ss_pred             EEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCCCCEEEeec
Confidence            88888743 3678999999998 566666 5899999999999 9999998887778887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.50  E-value=1e-11  Score=105.34  Aligned_cols=211  Identities=15%  Similarity=0.084  Sum_probs=146.4

Q ss_pred             cEEEEEEcCCCCEEEEEcC--CCeEEEEEccCceEEEEecCCCceeEEEEeecC-cEEEEEeCCeEEEEeCCC--CEEEE
Q psy9936          12 GIYRMNYTKNGRHLLLGGK--RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLE-TMFAVAQKDWVYIYDNQG--IELHC   86 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~i~~~~~--~~~~~   86 (315)
                      ....++|+|||++++++..  ++.|.++|+.+++.+..+...+.  ...+.... .+++.+.||.+.+.++..  .....
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~  215 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  215 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence            3456899999998887753  68899999999999988865442  12222233 344555688888888743  32221


Q ss_pred             ee-cC----CceE-EEEEc-CCCceEEEEcCCCeEEEEEccCCe--EEEEec----------cCCCCeEEEEEcCCCCEE
Q psy9936          87 LK-VL----NKVT-RMEFL-PYHFLLATASEEGYLSWLDTSIGK--IVSDFS----------AKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        87 ~~-~~----~~v~-~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~----------~~~~~v~~~~~~p~~~~l  147 (315)
                      .. ..    .++. ...|. ++|++++ .+.+|.+++.|+.++.  ....+.          ...+....++++|+++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence            11 11    2222 24564 6775554 5568999999997553  222221          012233457789999987


Q ss_pred             EEEcC----------CCeEEEEcCCCCcceeEeecccccEEEEEECCCCC-EEEEe-eCCCcEEEEEccCCCCCeeEecc
Q psy9936         148 CLGHR----------NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT-YMATS-AGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       148 ~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~-~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      +....          .+.|.++|+.+++.+..+.. ...+.+++++||++ +|+++ ..++.|.++|..++ +.+..+..
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~  372 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ  372 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecC
Confidence            77642          25799999999999988873 34778999999997 66664 45889999999999 99999988


Q ss_pred             CCCceeEEEccC
Q psy9936         216 RTPINNLAFSQR  227 (315)
Q Consensus       216 ~~~v~~~~~s~~  227 (315)
                      ....+.+.+++|
T Consensus       373 ~~~p~~l~~s~d  384 (386)
T 3sjl_D          373 LGHGPQVITTAD  384 (386)
T ss_dssp             CCSSCCEEEECC
T ss_pred             CCCCceeEECCc
Confidence            887888888887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.48  E-value=6.6e-11  Score=95.29  Aligned_cols=193  Identities=11%  Similarity=0.039  Sum_probs=137.6

Q ss_pred             cEEEEEEcCCCCEEEEEcC--CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-CEEEE
Q psy9936          12 GIYRMNYTKNGRHLLLGGK--RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-IELHC   86 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~~~~~   86 (315)
                      ....++|+|++.++++.+.  ++.|+++|+.+++.+..+..........+..++..|..+.  ++.+.++|..+ +.+..
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~  101 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN  101 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence            4689999998755554443  5789999999999988876444333333444455555554  78999999865 44445


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-----CCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-----GKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      +... ......++++|+.++++..++.|.++|..+.+.+..+....     ..++.+.|. +|..++....++.|.+.|.
T Consensus       102 i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          102 FTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             EECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred             EECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence            5433 11234466788877777778899999999988887765322     236788888 7766666656889999999


Q ss_pred             CCCcceeEeeccc-------------ccEEEEEECCCCC-EEEEeeCCCcEEEEEccCC
Q psy9936         162 TVQKPLASLLCHK-------------AGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       162 ~~~~~~~~~~~~~-------------~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~  206 (315)
                      .+++.+..+....             ...+.|+|+|+++ +++++...+.+.+.++...
T Consensus       180 ~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          180 KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999888886321             2568999999986 4556667788999888765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=3.6e-11  Score=104.17  Aligned_cols=185  Identities=9%  Similarity=0.017  Sum_probs=133.3

Q ss_pred             EEEcCCCCEEEEEcCCC--eEEEEEccCceEEEEe----c-CCCceeEEEEee-cCcEEEEEeCCeEEEEeCCCCEEEEe
Q psy9936          16 MNYTKNGRHLLLGGKRG--HVAAFDWVRKTLACEM----N-VMEEVYDIKWLH-LETMFAVAQKDWVYIYDNQGIELHCL   87 (315)
Q Consensus        16 ~~~s~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~   87 (315)
                      ++|+|+++.|+++..++  .|.+++..++.....+    . ....+.+++++| ++.++++..++.|+.||..+.....+
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999888887755  7999988765543333    2 345678999999 56666644468899999976554444


Q ss_pred             e----c-C-Cc-eE-EEEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCC---------------CCeEEEEEcCC
Q psy9936          88 K----V-L-NK-VT-RMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKK---------------GKLSVMTQNPY  143 (315)
Q Consensus        88 ~----~-~-~~-v~-~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------~~v~~~~~~p~  143 (315)
                      .    . . .. .. .++|+|+ +.++++-..++.|+.|+....  +..+.++.               .....++++|+
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence            1    1 1 11 13 9999995 666666677889999997633  22332222               34789999999


Q ss_pred             CCEEEEEc-CCCeEEEEcCCCCcceeEeecc---------------cccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         144 NACICLGH-RNGTVTMWSPTVQKPLASLLCH---------------KAGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       144 ~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      |+++++-. .++.|+.||+.++. +..+.++               -..+..++++|+|.++++-..++.|+.+++
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            99777777 88999999987775 4444443               245789999999888888888888988775

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.44  E-value=4.7e-14  Score=120.71  Aligned_cols=200  Identities=14%  Similarity=0.100  Sum_probs=119.5

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEE-eCCeEEEEeC-CCCEEEEeecC--CceE-E
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVA-QKDWVYIYDN-QGIELHCLKVL--NKVT-R   95 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~i~~~-~~~~~~~~~~~--~~v~-~   95 (315)
                      ++..+++++.||.|+.||..+|+.+..+.. +.+.+..+.+++.+++++ .|+.|+.||. +++.+......  ..+. +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            567899999999999999999999888776 666666666777666664 5899999998 45444333321  1110 1


Q ss_pred             EEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccc
Q psy9936          96 MEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKA  175 (315)
Q Consensus        96 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  175 (315)
                      ..+. .+..+++++.++.++.||..+|+.+..+..+.    ...++|++..+++++.++.|..||.++++.+..+..+. 
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence            1111 34567788889999999999999887776543    23456788899999999999999999998877765321 


Q ss_pred             cEEEEEECCCC---CEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc-eeEEEccCCe
Q psy9936         176 GIQSVAVNHTG---TYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI-NNLAFSQRGL  229 (315)
Q Consensus       176 ~i~~~~~sp~g---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~g~  229 (315)
                       .....++++.   ..+++++.||.+..||..++ +.+.......++ ....++++|.
T Consensus       161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEECSSCEEEEEECTTSSC
T ss_pred             -ccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecCCCceEEEEEecCCce
Confidence             1233344432   45777889999999999998 777777766665 3456667775

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.39  E-value=1.7e-10  Score=98.83  Aligned_cols=215  Identities=9%  Similarity=0.060  Sum_probs=142.1

Q ss_pred             CCCCEEEE-EcCCCeEEEEEccCc----eEEEEec--------CCCceeEEEEeecCcEEEEE-eC------CeEEEEeC
Q psy9936          20 KNGRHLLL-GGKRGHVAAFDWVRK----TLACEMN--------VMEEVYDIKWLHLETMFAVA-QK------DWVYIYDN   79 (315)
Q Consensus        20 ~~~~~l~~-~~~dg~i~v~~~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~l~~~-~~------~~i~i~~~   79 (315)
                      +++++|++ +..++.|+|+|+.+.    +...+++        .......+..+|+| +++++ ++      +.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77887765 556788999998755    5666662        11245567788999 55443 23      68999998


Q ss_pred             CC-CEEEEeecC----CceEEEEEcCCCceEEEEc-------------------CCCeEEEEEccCCeEEEEeccCC--C
Q psy9936          80 QG-IELHCLKVL----NKVTRMEFLPYHFLLATAS-------------------EEGYLSWLDTSIGKIVSDFSAKK--G  133 (315)
Q Consensus        80 ~~-~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~~--~  133 (315)
                      .+ +.+..+...    ...+.+.|+|+++.+++..                   ...+|.+||+.+++.+.++....  .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            65 444444322    2234688899999888884                   36789999999998888876531  2


Q ss_pred             CeEEEEE--cCCCCEEEEEc------CCCeEEEEcCCCCc--ceeEe--ec----------------ccccEEEEEECCC
Q psy9936         134 KLSVMTQ--NPYNACICLGH------RNGTVTMWSPTVQK--PLASL--LC----------------HKAGIQSVAVNHT  185 (315)
Q Consensus       134 ~v~~~~~--~p~~~~l~~~~------~d~~i~i~d~~~~~--~~~~~--~~----------------~~~~i~~~~~sp~  185 (315)
                      ....+.|  +|+++++++++      .+++|.+|..+.++  ..+.+  ..                -...+..|.+|||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            3445655  99999887776      45688776554332  11111  10                0234678999999


Q ss_pred             CCEEEEeeC-CCcEEEEEccCCC--CCeeEeccCC---------------CceeEEEccCCeEEEEcC
Q psy9936         186 GTYMATSAG-DSQLRIWDVRNLE--GPLNTFRTRT---------------PINNLAFSQRGLLATSRG  235 (315)
Q Consensus       186 g~~l~~~~~-d~~i~iwd~~~~~--~~~~~~~~~~---------------~v~~~~~s~~g~~~~~~~  235 (315)
                      |++|+++.. .+.|.+||+....  +.+..+....               ....++++|||.++...+
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999887764 6789999986331  3444444331               368999999996443333

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.39  E-value=1.6e-10  Score=102.23  Aligned_cols=217  Identities=7%  Similarity=-0.011  Sum_probs=152.4

Q ss_pred             EEEEcCCCeEEEEEccCceEEEEecC----------------------------------------CCceeEEEEee---
Q psy9936          25 LLLGGKRGHVAAFDWVRKTLACEMNV----------------------------------------MEEVYDIKWLH---   61 (315)
Q Consensus        25 l~~~~~dg~i~v~~~~~~~~~~~~~~----------------------------------------~~~v~~~~~~~---   61 (315)
                      +.+|+..|.++|+-+.+++.+..+..                                        .+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            45778889999999988876654420                                        01122345554   


Q ss_pred             --cCcEEEEEe--CCeEEEEeCCCCEE-E--EeecCCceEEEEE-c-CCCceEEEEc------------------CCCeE
Q psy9936          62 --LETMFAVAQ--KDWVYIYDNQGIEL-H--CLKVLNKVTRMEF-L-PYHFLLATAS------------------EEGYL  114 (315)
Q Consensus        62 --~~~~l~~~~--~~~i~i~~~~~~~~-~--~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i  114 (315)
                        ||+++.+..  ++.|.+.|+...+. .  .+.....+..+++ + |++.++++++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              788888776  56799999976553 2  3334466888888 5 9999988884                  34579


Q ss_pred             EEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC--------------------------------------eE
Q psy9936         115 SWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG--------------------------------------TV  156 (315)
Q Consensus       115 ~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--------------------------------------~i  156 (315)
                      .++|..+.+.+.++.... ....++++|+|+++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999998888876433 346688999999988887542                                      47


Q ss_pred             EEEcCCC--Ccc-eeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCC-----------CCeeEeccCCCcee
Q psy9936         157 TMWSPTV--QKP-LASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLE-----------GPLNTFRTRTPINN  221 (315)
Q Consensus       157 ~i~d~~~--~~~-~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~v~~  221 (315)
                      .+.|.++  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+..           ..+..+....+...
T Consensus       257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h  335 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  335 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred             EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence            7778776  444 445543 33557899999999877665 67799999998641           12344555567899


Q ss_pred             EEEccCCe-EEEE-cCCEEEecCC
Q psy9936         222 LAFSQRGL-LATS-RGNIVEFLKP  243 (315)
Q Consensus       222 ~~~s~~g~-~~~~-~~~~i~~~~~  243 (315)
                      ++|+|+|. |++. .++.|..|+.
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEH
T ss_pred             EEECCCCeEEEEEecCCcEEEEEh
Confidence            99999994 3333 4788876654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.38  E-value=3.2e-11  Score=106.62  Aligned_cols=210  Identities=12%  Similarity=0.041  Sum_probs=146.2

Q ss_pred             CCCEEEEEcC-CCeEEEEEccCceEEEEec--CCCceeEEEE-e-ecCcEEEEEe-------------------CCeEEE
Q psy9936          21 NGRHLLLGGK-RGHVAAFDWVRKTLACEMN--VMEEVYDIKW-L-HLETMFAVAQ-------------------KDWVYI   76 (315)
Q Consensus        21 ~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~l~~~~-------------------~~~i~i   76 (315)
                      ||+++.+... ++.|.+.|+.+.+....+.  .......+++ + |++.++.+++                   ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8887776554 5679999999999877444  4456888888 4 8998888873                   247888


Q ss_pred             EeCCCCEE-EEeecCCceEEEEEcCCCceEEEEcCCC--------------------------------------eEEEE
Q psy9936          77 YDNQGIEL-HCLKVLNKVTRMEFLPYHFLLATASEEG--------------------------------------YLSWL  117 (315)
Q Consensus        77 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~~~  117 (315)
                      .|.++.++ ..+.-.+....++++|+|+++++.+.+.                                      .|.+.
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            99866443 3444434556788999999998887553                                      36666


Q ss_pred             EccC--CeE-EEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCCCc------------ceeEeecccccEEEEE
Q psy9936         118 DTSI--GKI-VSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVTMWSPTVQK------------PLASLLCHKAGIQSVA  181 (315)
Q Consensus       118 d~~~--~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~  181 (315)
                      |..+  ++. +..+... ....++.++|||+++++++ .+.+|.++|+.+.+            .+.++. -......++
T Consensus       260 D~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a  337 (595)
T 1fwx_A          260 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA  337 (595)
T ss_dssp             ECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred             eCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence            7665  433 3444322 2356789999999777665 57899999998653            223333 335678999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEEccC----------CCCCeeEeccCCCc------eeEEEccCCeEEEE
Q psy9936         182 VNHTGTYMATSAGDSQLRIWDVRN----------LEGPLNTFRTRTPI------NNLAFSQRGLLATS  233 (315)
Q Consensus       182 ~sp~g~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v------~~~~~s~~g~~~~~  233 (315)
                      |+|+|...++.-.|++|.+||+..          . ..+..+..+..+      ..+.++|||+++.+
T Consensus       338 F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~-~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~  404 (595)
T 1fwx_A          338 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD-PIKDKLDVHYQPGHLKTVMGETLDATNDWLVC  404 (595)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC-CEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred             ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc-eeEEEeecccccccceeccceEeCCCCCEEEE
Confidence            999994444556799999999987          3 566666666543      34466899965544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.38  E-value=3e-10  Score=91.42  Aligned_cols=194  Identities=11%  Similarity=-0.009  Sum_probs=134.7

Q ss_pred             ceEEEEecCCCc--eeEEEEeecCcEEEEEe---CCeEEEEeCC-CCEEEEeecCC--ceEEEEEcCCCceE-EEEcCCC
Q psy9936          42 KTLACEMNVMEE--VYDIKWLHLETMFAVAQ---KDWVYIYDNQ-GIELHCLKVLN--KVTRMEFLPYHFLL-ATASEEG  112 (315)
Q Consensus        42 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~---~~~i~i~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~  112 (315)
                      .+.+.++.|...  ...+.|++++.++++++   ++.|.++|+. ++.+..+....  ....+++.  +..| ++.-.++
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            455667776643  57999999886666654   4799999995 45444444322  23345554  4444 4445678


Q ss_pred             eEEEEEccCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc-----ccEEEEEECCCC
Q psy9936         113 YLSWLDTSIGKIVSDFSAK-KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK-----AGIQSVAVNHTG  186 (315)
Q Consensus       113 ~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~sp~g  186 (315)
                      .+.++|..+.+.+.++... ..   ...+++||+.++++..++.|.++|..+.+.+..+....     ..++.+.|. +|
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg  162 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG  162 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC
Confidence            9999999999998888643 22   23456688877777778999999999988888776321     236788888 77


Q ss_pred             CEEEEeeCCCcEEEEEccCCCCCeeEeccC--------------CCceeEEEccCC-eEEEEc--CCEEEecC
Q psy9936         187 TYMATSAGDSQLRIWDVRNLEGPLNTFRTR--------------TPINNLAFSQRG-LLATSR--GNIVEFLK  242 (315)
Q Consensus       187 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~s~~g-~~~~~~--~~~i~~~~  242 (315)
                      ..++....++.|.+.|..++ +.+..+...              ...+.++|+|++ ++.+++  .+.+...+
T Consensus       163 ~lyvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          163 EVWANIWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             EEEEecCCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            65555556789999999999 888887643              135899999998 444443  45555444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=7.3e-10  Score=94.87  Aligned_cols=226  Identities=12%  Similarity=0.123  Sum_probs=148.6

Q ss_pred             eEEEEEccC-----ceEEEEecCC---CceeEEEE-----------e--ecCcEEEEEe--CCeEEEEeCCCC-----EE
Q psy9936          33 HVAAFDWVR-----KTLACEMNVM---EEVYDIKW-----------L--HLETMFAVAQ--KDWVYIYDNQGI-----EL   84 (315)
Q Consensus        33 ~i~v~~~~~-----~~~~~~~~~~---~~v~~~~~-----------~--~~~~~l~~~~--~~~i~i~~~~~~-----~~   84 (315)
                      .|.+.|++.     ++.+..+...   .....+.|           +  +++++|.+.+  ++.|+++|+...     ..
T Consensus        44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~  123 (462)
T 2ece_A           44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII  123 (462)
T ss_dssp             EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred             eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence            467777765     5665554411   13444445           6  7888888876  689999998432     22


Q ss_pred             EEee-------cC-CceEEEEEcCCCceEEEEcCC------CeEEEEEccCCeEEEEeccCCC---CeEEEEEcCCCCEE
Q psy9936          85 HCLK-------VL-NKVTRMEFLPYHFLLATASEE------GYLSWLDTSIGKIVSDFSAKKG---KLSVMTQNPYNACI  147 (315)
Q Consensus        85 ~~~~-------~~-~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~---~v~~~~~~p~~~~l  147 (315)
                      ..+.       .. .....+.++|+| +++++..+      |.|.++|..+.+.+.++.....   ..+.+.|+|+++.+
T Consensus       124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m  202 (462)
T 2ece_A          124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL  202 (462)
T ss_dssp             EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred             eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence            3331       11 245667889999 66665544      7899999999999988863222   24457889999988


Q ss_pred             EEEc-------------------CCCeEEEEcCCCCcceeEeecc--cccEEEEEE--CCCCCEEEEee------CCCcE
Q psy9936         148 CLGH-------------------RNGTVTMWSPTVQKPLASLLCH--KAGIQSVAV--NHTGTYMATSA------GDSQL  198 (315)
Q Consensus       148 ~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~--sp~g~~l~~~~------~d~~i  198 (315)
                      ++..                   ...+|.+||+.+++.+.++...  ......+.|  +|+++++++++      .+++|
T Consensus       203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V  282 (462)
T 2ece_A          203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI  282 (462)
T ss_dssp             EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred             EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence            8874                   3689999999998888877642  134456666  99999888776      56678


Q ss_pred             EEEEccCCC-CCeeEe--cc-----------------CCCceeEEEccCCe--EEEE-cCCEEEecC-------------
Q psy9936         199 RIWDVRNLE-GPLNTF--RT-----------------RTPINNLAFSQRGL--LATS-RGNIVEFLK-------------  242 (315)
Q Consensus       199 ~iwd~~~~~-~~~~~~--~~-----------------~~~v~~~~~s~~g~--~~~~-~~~~i~~~~-------------  242 (315)
                      .+|....+. ...+.+  ..                 ...+..+.+||||+  |++. +.+.|.+++             
T Consensus       283 ~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I  362 (462)
T 2ece_A          283 WLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV  362 (462)
T ss_dssp             EEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             EEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence            776654320 001110  00                 23478999999995  3333 356776433             


Q ss_pred             --------------------CCceeecccccccccCC
Q psy9936         243 --------------------PPEINFEPRRKANKAGG  259 (315)
Q Consensus       243 --------------------~~~~~~~~~~~~~~~~~  259 (315)
                                          |..+.++|||+++..+.
T Consensus       363 ~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          363 KLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                                46677888888776665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.36  E-value=3.2e-09  Score=86.35  Aligned_cols=213  Identities=9%  Similarity=-0.016  Sum_probs=139.7

Q ss_pred             cEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEe
Q psy9936          12 GIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~   87 (315)
                      .+.+++|+|++..|+ +....+.|.+++..+......+. .......+++.+++..|..+.  .+.|.++++++.....+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            456899999766555 44557899999987765443333 225678999999755555443  57899999976543333


Q ss_pred             e--cCCceEEEEEcCCCceEEEEcC---CCeEEEEEccCCeEEEEe-ccCCCCeEEEEEcCCCCEEEE-EcCCCeEEEEc
Q psy9936          88 K--VLNKVTRMEFLPYHFLLATASE---EGYLSWLDTSIGKIVSDF-SAKKGKLSVMTQNPYNACICL-GHRNGTVTMWS  160 (315)
Q Consensus        88 ~--~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~-~~~d~~i~i~d  160 (315)
                      .  .......++++|++..|+.+..   .+.|..+++... ....+ .........++++|++..|+. ....+.|.++|
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            2  2256789999997655555543   468888887633 22222 223345789999998765554 45568999999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC--CceeEEEccCC
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT--PINNLAFSQRG  228 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g  228 (315)
                      +........+.. ......++.. .+.++++....+.|.++|..++ +.+..+....  ....+++.|++
T Consensus       196 ~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          196 PAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT-EEEEEECCSSCCCCCCEEEECSC
T ss_pred             cCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC-CceEEEccccccccceeeecCcc
Confidence            985443333332 2334566654 3434444445678999999988 7777776543  47888888876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=5.9e-11  Score=100.70  Aligned_cols=207  Identities=9%  Similarity=-0.084  Sum_probs=134.0

Q ss_pred             eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-----------CCeEEEEeCC-CCEEEEeecC--------Cc
Q psy9936          33 HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-----------KDWVYIYDNQ-GIELHCLKVL--------NK   92 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~i~~~~-~~~~~~~~~~--------~~   92 (315)
                      .|.++|..+++.+..+...... .+.++||++.+.++.           ++.|.+||+. .+.+..+...        ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence            7889999999999988833333 899999998888775           5789999995 4555555432        34


Q ss_pred             eEEEEEcCCCceEEEEcC--CCeEEE--EEccCCeEEEEeccCCC-------CeEEEEE---------------------
Q psy9936          93 VTRMEFLPYHFLLATASE--EGYLSW--LDTSIGKIVSDFSAKKG-------KLSVMTQ---------------------  140 (315)
Q Consensus        93 v~~~~~~~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~~~~-------~v~~~~~---------------------  140 (315)
                      ...++++|||++++++..  ...+.+  +|+.+   +..+.....       .-.-+++                     
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v  202 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence            668999999999998864  456888  88865   222211000       0000111                     


Q ss_pred             ----------------cCCCCEEEEEcCCCeEEEEcCCCCc--ceeEeec-------cc---ccEEEEEECCCCCEEEEe
Q psy9936         141 ----------------NPYNACICLGHRNGTVTMWSPTVQK--PLASLLC-------HK---AGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       141 ----------------~p~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~-------~~---~~i~~~~~sp~g~~l~~~  192 (315)
                                      .+++..++..+. +.+.+.|+.+..  .+..+..       +.   .....++++|+++.++++
T Consensus       203 ~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          203 GAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             EEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence                            222333333333 566666765432  1111110       00   111126899999988765


Q ss_pred             eC---------CCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEc--CCEEEecCCCc
Q psy9936         193 AG---------DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSR--GNIVEFLKPPE  245 (315)
Q Consensus       193 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~--~~~i~~~~~~~  245 (315)
                      ..         ++.+.++|+.+. +.+..+........++|+|||.  +++..  +++|.+++...
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVG-QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSC-CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eccccCcccccCCCEEEEECCCC-eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            43         235669999998 8888888777799999999993  45554  79999988733

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=1.7e-10  Score=97.68  Aligned_cols=191  Identities=9%  Similarity=-0.016  Sum_probs=127.6

Q ss_pred             CcEEEEEEcCCCCEEEEEcC-----CCeEEEEEccCceEEEEecCC-------CceeEEEEeec-CcEEEEE----eCCe
Q psy9936          11 FGIYRMNYTKNGRHLLLGGK-----RGHVAAFDWVRKTLACEMNVM-------EEVYDIKWLHL-ETMFAVA----QKDW   73 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~-----dg~i~v~~~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~l~~~----~~~~   73 (315)
                      ..+.+++++++|+++++...     ++.|.+||+.+++.+..+...       ..+..+++.++ +..+++.    .++.
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            57899999999987665543     478999999999876665421       24688999986 4444443    3578


Q ss_pred             EEEEeCCC-CEEEEeec------------------------------CCceEEEEEcCCCceEEEEcCCC-eEEEEEcc-
Q psy9936          74 VYIYDNQG-IELHCLKV------------------------------LNKVTRMEFLPYHFLLATASEEG-YLSWLDTS-  120 (315)
Q Consensus        74 i~i~~~~~-~~~~~~~~------------------------------~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~-  120 (315)
                      |.+||+.+ .....+..                              ...+..++|+|+++.|+++...+ .+..++.. 
T Consensus       147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~  226 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD  226 (343)
T ss_dssp             EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred             EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence            99999854 33332211                              02357899999998888876655 56556542 


Q ss_pred             --CCe-----EEE--EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec-ccccEEEEEECCCCCEEE
Q psy9936         121 --IGK-----IVS--DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC-HKAGIQSVAVNHTGTYMA  190 (315)
Q Consensus       121 --~~~-----~~~--~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~  190 (315)
                        .+.     ...  ...++.+....++++++|+++++...++.|.+||..+++....... +...+.+++|.++|.+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v  306 (343)
T 2qe8_A          227 LSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYF  306 (343)
T ss_dssp             HTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEE
T ss_pred             hcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEE
Confidence              110     000  1112333456799999999999988899999999855653322221 245688999999998888


Q ss_pred             EeeCCCcEEEE
Q psy9936         191 TSAGDSQLRIW  201 (315)
Q Consensus       191 ~~~~d~~i~iw  201 (315)
                      +.+..+.+.+|
T Consensus       307 ~~~~~~~~~~f  317 (343)
T 2qe8_A          307 DCNQLHHSAPL  317 (343)
T ss_dssp             EECCGGGSGGG
T ss_pred             EeCcccccccc
Confidence            87655554433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.33  E-value=4.3e-10  Score=103.57  Aligned_cols=222  Identities=13%  Similarity=0.105  Sum_probs=151.3

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCC------CceeEEEEeecCcEEEEEe------CCeEEEEeC-CCCEEEEe
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVM------EEVYDIKWLHLETMFAVAQ------KDWVYIYDN-QGIELHCL   87 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~------~~~i~i~~~-~~~~~~~~   87 (315)
                      ++..|++++.++.|..+|..+|+.+..+...      ..+...-...++.+++.+.      ++.|+.+|. +++.+..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            3567888888999999999999998877633      1222211223555555443      589999998 45655544


Q ss_pred             ecCCc---------------------------------eEEEEEcCCCceEEEEcCCC-------------------eEE
Q psy9936          88 KVLNK---------------------------------VTRMEFLPYHFLLATASEEG-------------------YLS  115 (315)
Q Consensus        88 ~~~~~---------------------------------v~~~~~~~~~~~l~~~~~d~-------------------~i~  115 (315)
                      .....                                 ...++++|++..++.++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            32111                                 13578889888888887664                   599


Q ss_pred             EEEccCCeEEEEecc--CC-------CCeEEEEEcCCC---CEEEEEcCCCeEEEEcCCCCcceeEeeccc---------
Q psy9936         116 WLDTSIGKIVSDFSA--KK-------GKLSVMTQNPYN---ACICLGHRNGTVTMWSPTVQKPLASLLCHK---------  174 (315)
Q Consensus       116 ~~d~~~~~~~~~~~~--~~-------~~v~~~~~~p~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------  174 (315)
                      .+|..+|+.+-.++.  |.       .....+....+|   ..++.++.+|.+.++|.++++.+..+....         
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            999999998877653  21       112223344477   688999999999999999999877654211         


Q ss_pred             --ccE------------------------EEEEECCCCCEEEEeeC----------------------------------
Q psy9936         175 --AGI------------------------QSVAVNHTGTYMATSAG----------------------------------  194 (315)
Q Consensus       175 --~~i------------------------~~~~~sp~g~~l~~~~~----------------------------------  194 (315)
                        .++                        ..++++|++.++++...                                  
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence              011                        14688898887777543                                  


Q ss_pred             ---------CCcEEEEEccCCCCCeeEeccCCCceeEEEccCC-e-EEEEcCCEEEecCC
Q psy9936         195 ---------DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG-L-LATSRGNIVEFLKP  243 (315)
Q Consensus       195 ---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~-~~~~~~~~i~~~~~  243 (315)
                               .+.|..||+.++ +.+..+....++....++.++ + ++++.++.++.|+.
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTT-EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccCCCCCccEEEEEeCCCC-cEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                     267999999998 777777766666665566554 3 55567899997765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.32  E-value=9.1e-09  Score=86.12  Aligned_cols=228  Identities=11%  Similarity=0.067  Sum_probs=148.8

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--------------------CCCceeEEEEee-cCcEEEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--------------------VMEEVYDIKWLH-LETMFAVA   69 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~~   69 (315)
                      ..+.+++++++|++++++..++.|..|+..++.......                    ....+..+++.+ +++++++.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            456789999999878888888999999987765432211                    013478899997 77777766


Q ss_pred             eCCeEEEEeCCCCEEEEeec------CCceEEEEEcC-CCceEEEEcC-----------------CCeEEEEEccCCeEE
Q psy9936          70 QKDWVYIYDNQGIELHCLKV------LNKVTRMEFLP-YHFLLATASE-----------------EGYLSWLDTSIGKIV  125 (315)
Q Consensus        70 ~~~~i~i~~~~~~~~~~~~~------~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~~~d~~~~~~~  125 (315)
                      ..+.|..+|..+..+..+..      ......+++.+ +|.+.++...                 ++.|..||..+++..
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            66668888887554433321      23578899999 8876665432                 367889998766543


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEcCCCCc--ceeEeecccccEEEEEECCCCCEEEEeeC--------
Q psy9936         126 SDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWSPTVQK--PLASLLCHKAGIQSVAVNHTGTYMATSAG--------  194 (315)
Q Consensus       126 ~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--------  194 (315)
                      .... .......++++|+|+.|+++ ...+.|.+|++....  ....+....+ ...+++.++|+++++...        
T Consensus       179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~  256 (322)
T 2fp8_A          179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG  256 (322)
T ss_dssp             EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred             Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence            3222 12335679999999866555 556899999987532  1222221223 788999999987666544        


Q ss_pred             --CCcEEEEEccCCCCCeeEeccCC-----CceeEEEccCCe-EEEE-cCCEEEecCC
Q psy9936         195 --DSQLRIWDVRNLEGPLNTFRTRT-----PINNLAFSQRGL-LATS-RGNIVEFLKP  243 (315)
Q Consensus       195 --d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~-~~~~-~~~~i~~~~~  243 (315)
                        .+.|..+|.. + +.+..+....     .+..+++ .++. ++++ ..+.|..+++
T Consensus       257 ~~~~~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          257 RVDPKGIKFDEF-G-NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             CEEEEEEEECTT-S-CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             CCccEEEEECCC-C-CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence              4568888864 4 6666665432     3566766 4564 4444 4566766553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.32  E-value=1.5e-09  Score=86.42  Aligned_cols=181  Identities=8%  Similarity=0.020  Sum_probs=129.1

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCC--eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCC-CCEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRG--HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQ-GIELH   85 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg--~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~-~~~~~   85 (315)
                      .-...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+............+++..|....  ++.+.+||.. .+.+.
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            334788898 666666666655  89999999999998887655555544445555555544  8899999995 45555


Q ss_pred             EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-----CCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          86 CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-----GKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        86 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      .+.....-  ..+++++..|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +|..++..-.+..|.+.|
T Consensus       122 ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          122 SFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            66654322  3344667777777667889999999998888765421     335667776 777666666788999999


Q ss_pred             CCCCcceeEeecc------------cccEEEEEECCCCCEEEEeeCC
Q psy9936         161 PTVQKPLASLLCH------------KAGIQSVAVNHTGTYMATSAGD  195 (315)
Q Consensus       161 ~~~~~~~~~~~~~------------~~~i~~~~~sp~g~~l~~~~~d  195 (315)
                      ..+++.+..+...            ..-.+.|+|+|+++.|++.+..
T Consensus       199 p~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          199 PETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            9999988777631            1356899999998877666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=2.8e-10  Score=105.36  Aligned_cols=187  Identities=12%  Similarity=0.081  Sum_probs=121.7

Q ss_pred             CceeEEEEeecCcEEEEEe--C----CeEEEEeCCCCEEEEeecCC-ceEEEEEcCCCceEEEEcCCC------------
Q psy9936          52 EEVYDIKWLHLETMFAVAQ--K----DWVYIYDNQGIELHCLKVLN-KVTRMEFLPYHFLLATASEEG------------  112 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~--~----~~i~i~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~------------  112 (315)
                      ..+..++|||||++|+.+.  .    ..|++||+.+.+........ ....++|+ |++.|+.++.+.            
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            3578889999999998654  2    37999999765543322111 13578899 999888887764            


Q ss_pred             -eEEEEEccCCe----EEEEecc-CCCCeEEEEEcCCCCEEEEEc----CCCeEEEEcCCCCc-ceeEeecccccEEEEE
Q psy9936         113 -YLSWLDTSIGK----IVSDFSA-KKGKLSVMTQNPYNACICLGH----RNGTVTMWSPTVQK-PLASLLCHKAGIQSVA  181 (315)
Q Consensus       113 -~i~~~d~~~~~----~~~~~~~-~~~~v~~~~~~p~~~~l~~~~----~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~  181 (315)
                       .|++|++.++.    .+..... |......+.|+|||++|+...    .+..|.++|+.++. ....+..+....... 
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-  286 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-  286 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred             cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence             39999987764    2333333 445578899999999876543    23589999998763 455666566655555 


Q ss_pred             ECCCCCEEEEee-CC---CcEEEEEccCCCCC--eeEeccCC-CceeEEEccCCe-E-EEEc-CC--EEEecCC
Q psy9936         182 VNHTGTYMATSA-GD---SQLRIWDVRNLEGP--LNTFRTRT-PINNLAFSQRGL-L-ATSR-GN--IVEFLKP  243 (315)
Q Consensus       182 ~sp~g~~l~~~~-~d---~~i~iwd~~~~~~~--~~~~~~~~-~v~~~~~s~~g~-~-~~~~-~~--~i~~~~~  243 (315)
                      |+++|..|+..+ .+   +.|..+|+.++ ..  ...+..+. .+.  .|++++. + +... ++  .|.+|++
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANP-GPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSC-CGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCC-CccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence            667776555444 33   57999999876 43  23444443 343  8888883 2 2222 33  5666654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.28  E-value=2.2e-09  Score=85.50  Aligned_cols=187  Identities=7%  Similarity=0.036  Sum_probs=128.2

Q ss_pred             eEEEEecCCCc--eeEEEEeecCcEEEEEe-CC--eEEEEeCC-CCEEEEeecCCceEEEEEcCCCceEEEE-cCCCeEE
Q psy9936          43 TLACEMNVMEE--VYDIKWLHLETMFAVAQ-KD--WVYIYDNQ-GIELHCLKVLNKVTRMEFLPYHFLLATA-SEEGYLS  115 (315)
Q Consensus        43 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-~~--~i~i~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~  115 (315)
                      +.+.++.|...  ...+.|+ ++.++.+++ +|  .|+.+|+. ++.+..+............+++..|+.. -.++.+.
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            45666776654  4788998 666665554 44  89999995 4555555544444443333445555554 4578999


Q ss_pred             EEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc--c---ccEEEEEECCCCCEEE
Q psy9936         116 WLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH--K---AGIQSVAVNHTGTYMA  190 (315)
Q Consensus       116 ~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~sp~g~~l~  190 (315)
                      +||..+.+.+.++.....   ...+.+++..|+.+..++.|.++|..+.+.+..+...  .   ..++.+.|. +|+.++
T Consensus       111 v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             EEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            999999999998875332   2333467777777766889999999999888877632  1   334567776 777666


Q ss_pred             EeeCCCcEEEEEccCCCCCeeEeccC-------------CCceeEEEccCC-eEEEEcC
Q psy9936         191 TSAGDSQLRIWDVRNLEGPLNTFRTR-------------TPINNLAFSQRG-LLATSRG  235 (315)
Q Consensus       191 ~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~s~~g-~~~~~~~  235 (315)
                      ..-.++.|.+.|.+++ +.+..+...             ...+.|+|+|++ ++.+++.
T Consensus       187 n~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          187 NVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6657889999999998 877777542             124889999986 4555553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=2.2e-09  Score=99.11  Aligned_cols=234  Identities=13%  Similarity=0.115  Sum_probs=154.2

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCC-C-----ceeEEEEeecCcEEEEEe------CCeEEEEeCC-CCEEEEee
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVM-E-----EVYDIKWLHLETMFAVAQ------KDWVYIYDNQ-GIELHCLK   88 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-~-----~v~~~~~~~~~~~l~~~~------~~~i~i~~~~-~~~~~~~~   88 (315)
                      +..|++++.|+.|+.+|..+|+.+..+... .     .+.+.-...++.+++...      ++.|+.||.. ++.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            457888888999999999999988776532 1     121111112565555432      5789999984 55554443


Q ss_pred             cC--C------------------------------ceEEEEEcCCCceEEEEcCCCe-------------------EEEE
Q psy9936          89 VL--N------------------------------KVTRMEFLPYHFLLATASEEGY-------------------LSWL  117 (315)
Q Consensus        89 ~~--~------------------------------~v~~~~~~~~~~~l~~~~~d~~-------------------i~~~  117 (315)
                      ..  .                              ....++++|++.+++.++.++.                   |..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            11  0                              0125788898888999887764                   9999


Q ss_pred             EccCCeEEEEecc--CC-------CCeEEEEEcCCCC---EEEEEcCCCeEEEEcCCCCcceeEeeccc-ccE-------
Q psy9936         118 DTSIGKIVSDFSA--KK-------GKLSVMTQNPYNA---CICLGHRNGTVTMWSPTVQKPLASLLCHK-AGI-------  177 (315)
Q Consensus       118 d~~~~~~~~~~~~--~~-------~~v~~~~~~p~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i-------  177 (315)
                      |..+|+.+-.++.  |.       ..+.......+|+   .++.++.+|.+.++|.++++.+....... .+.       
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            9999998887654  21       1122222233565   78889999999999999998874332100 000       


Q ss_pred             -------------------------------EEEEECCCCCEEEEeeC--------------------------------
Q psy9936         178 -------------------------------QSVAVNHTGTYMATSAG--------------------------------  194 (315)
Q Consensus       178 -------------------------------~~~~~sp~g~~l~~~~~--------------------------------  194 (315)
                                                     ..++++|+..++++...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                           12688888777776532                                


Q ss_pred             -------------CCcEEEEEccCCCCCeeEeccCCCceeEEEccC-Ce-EEEEcCCEEEecCC----------------
Q psy9936         195 -------------DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQR-GL-LATSRGNIVEFLKP----------------  243 (315)
Q Consensus       195 -------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-g~-~~~~~~~~i~~~~~----------------  243 (315)
                                   +|.|..||+.++ +.+..+..+.+.....++.. ++ ++++.|+.++.|+.                
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~  519 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM  519 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cccccCCCCCCCcceeEEEEECCCC-CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence                         377999999999 88877777665554455444 44 55667899997765                


Q ss_pred             -Cceeecccccccc
Q psy9936         244 -PEINFEPRRKANK  256 (315)
Q Consensus       244 -~~~~~~~~~~~~~  256 (315)
                       .-+.|+.+|+..+
T Consensus       520 ~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          520 AAPVTYSVDGEQYV  533 (689)
T ss_dssp             SCCEEEEETTEEEE
T ss_pred             cCceEEEECCEEEE
Confidence             4466667776443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=1.2e-09  Score=100.55  Aligned_cols=200  Identities=17%  Similarity=0.152  Sum_probs=140.7

Q ss_pred             CCeEEEEEccCceEEEEecCCCce---------------------------------eEEEEeecCcEEEEEe-CC----
Q psy9936          31 RGHVAAFDWVRKTLACEMNVMEEV---------------------------------YDIKWLHLETMFAVAQ-KD----   72 (315)
Q Consensus        31 dg~i~v~~~~~~~~~~~~~~~~~v---------------------------------~~~~~~~~~~~l~~~~-~~----   72 (315)
                      +|.|+.+|..+|+.+..+......                                 ..+++.|++.++.++. ++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            689999999999988776522111                                 2467788777776664 32    


Q ss_pred             ---------------eEEEEeCC-CCEEEEeec--C--------CceEEEEEcCCC---ceEEEEcCCCeEEEEEccCCe
Q psy9936          73 ---------------WVYIYDNQ-GIELHCLKV--L--------NKVTRMEFLPYH---FLLATASEEGYLSWLDTSIGK  123 (315)
Q Consensus        73 ---------------~i~i~~~~-~~~~~~~~~--~--------~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~  123 (315)
                                     .|..+|.. ++.+..+..  +        .....+....+|   ..++.++.+|.++++|..+|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           48899985 454444332  1        122223334467   688999999999999999999


Q ss_pred             EEEEeccCCC----------C-e------------------------EEEEEcCCCCEEEEEcC----------------
Q psy9936         124 IVSDFSAKKG----------K-L------------------------SVMTQNPYNACICLGHR----------------  152 (315)
Q Consensus       124 ~~~~~~~~~~----------~-v------------------------~~~~~~p~~~~l~~~~~----------------  152 (315)
                      .+..+.....          . +                        ..++++|++.++++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            8876542210          0 1                        14688998887776532                


Q ss_pred             ---------------------------CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         153 ---------------------------NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       153 ---------------------------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                                                 .+.|..||+.+++.+.++. +..++....++.++.++++++.|+.+++||.++
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence                                       2789999999999888776 444455556667888889999999999999999


Q ss_pred             CCCCeeEeccCCC--ceeEEEccCCe-EEE
Q psy9936         206 LEGPLNTFRTRTP--INNLAFSQRGL-LAT  232 (315)
Q Consensus       206 ~~~~~~~~~~~~~--v~~~~~s~~g~-~~~  232 (315)
                      + +.+..+....+  ..-+.|.++|. +++
T Consensus       508 G-~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          508 G-EKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             C-CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             C-ceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            9 89988876654  35567778884 443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.27  E-value=2.5e-08  Score=81.02  Aligned_cols=219  Identities=11%  Similarity=0.023  Sum_probs=134.3

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEE-----EEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEee--cCC
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLA-----CEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCLK--VLN   91 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~--~~~   91 (315)
                      |.+|+.+. .+.|+.++++.....     ..+. ....+..++|.+++..|..+.  .+.|..+++++.....+.  ...
T Consensus         1 ~~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             CcEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            34555554 357888888765421     1121 123567899999765555554  679999999765443332  225


Q ss_pred             ceEEEEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC---CCeEEEEcCCCCcce
Q psy9936          92 KVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR---NGTVTMWSPTVQKPL  167 (315)
Q Consensus        92 ~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~i~d~~~~~~~  167 (315)
                      ....++++|++. ++++-...+.|.++++..................++++|++..|+.+..   .+.|..++++.. ..
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~  158 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NR  158 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CC
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-Cc
Confidence            788999999755 4445556788999998743322222222246789999997665555543   468888887643 33


Q ss_pred             eEee-cccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEc-CCEEEecCC
Q psy9936         168 ASLL-CHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSR-GNIVEFLKP  243 (315)
Q Consensus       168 ~~~~-~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~-~~~i~~~~~  243 (315)
                      ..+. ........++++|++..|+.+ ...+.|.++|.... .....+........++...+.++++.. ++.|..+++
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence            3332 223467899999987766555 45678999998764 333333322334667665333455543 567776554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.24  E-value=1.4e-09  Score=91.04  Aligned_cols=211  Identities=13%  Similarity=0.039  Sum_probs=142.4

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecC-CceEEEEEc
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVL-NKVTRMEFL   99 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~-~~v~~~~~~   99 (315)
                      +..|.+++.++.|..+|.. ++...... ....+.++...+++.+++.+.++.|..+|..+......... ..+.++...
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d  185 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIG  185 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEEC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEc
Confidence            4466777778889999988 66655554 33445666777788877766678999999886555444432 455667777


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEE
Q psy9936         100 PYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQS  179 (315)
Q Consensus       100 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  179 (315)
                      +++.++ .++  +.+..+| .+++....+......+.++...++|.+ ..++.++.+..+|. +++.+..+......+..
T Consensus       186 ~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~  259 (330)
T 3hxj_A          186 KDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGKRIESS  259 (330)
T ss_dssp             TTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred             CCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCCCcccc
Confidence            777644 444  7899999 677777666655566778888888754 45566778888874 46566655544443445


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC-eEEEEcCCEEEecC
Q psy9936         180 VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG-LLATSRGNIVEFLK  242 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g-~~~~~~~~~i~~~~  242 (315)
                      +.+.+++. |..++.++.+..+|. ++ +.+..+.... .+.++..+++| +++++.+|.+....
T Consensus       260 ~~~~~~g~-l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          260 PVIGNTDT-IYFGSYDGHLYAINP-DG-TEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALF  321 (330)
T ss_dssp             CEECTTSC-EEEECTTCEEEEECT-TS-CEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred             ceEcCCCe-EEEecCCCCEEEECC-CC-cEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEe
Confidence            66666664 556777888999986 55 5565555444 46788887887 46667788776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.24  E-value=2.4e-08  Score=78.88  Aligned_cols=182  Identities=9%  Similarity=0.034  Sum_probs=128.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC--CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-CEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR--GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-IEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~~~   84 (315)
                      ..-...+.|++ +.++.+.+.+  ..|+++|+.+++.+..+............+.+..|....  ++.+.+||..+ +.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            45567899986 5555565554  489999999999998887655555554444454454444  88999999954 455


Q ss_pred             EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-----CCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-----GKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ..+.....-..++  +++..|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|..++..-.+..|.+.
T Consensus        99 ~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X           99 ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI  175 (243)
T ss_dssp             EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence            5566544334444  567777777778899999999998888776432     245667765 67766666567899999


Q ss_pred             cCCCCcceeEeecc-------------cccEEEEEECCCCCEEEEeeCC
Q psy9936         160 SPTVQKPLASLLCH-------------KAGIQSVAVNHTGTYMATSAGD  195 (315)
Q Consensus       160 d~~~~~~~~~~~~~-------------~~~i~~~~~sp~g~~l~~~~~d  195 (315)
                      |.++++.+..+...             ..-.+.|+++|++..|++.+..
T Consensus       176 Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          176 DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            99999988777521             1356899999987766655543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.21  E-value=8.2e-08  Score=79.70  Aligned_cols=220  Identities=9%  Similarity=0.020  Sum_probs=141.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC--C-eEEEEeCCCCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK--D-WVYIYDNQGIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~-~i~i~~~~~~~~~~   86 (315)
                      ...+..++|+++|+++++...++.|..||..+. ....+.....+..+++.++++++++...  + .|..++.....+..
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            466789999999997777767889999997654 4444445567889999999997766542  2 47777764444433


Q ss_pred             eec---CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE-EEEec---------cCCCCeEEEEEcCCCCEEEEE-cC
Q psy9936          87 LKV---LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI-VSDFS---------AKKGKLSVMTQNPYNACICLG-HR  152 (315)
Q Consensus        87 ~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~---------~~~~~v~~~~~~p~~~~l~~~-~~  152 (315)
                      +..   ......++..+++..+++-..++.|+++|...+.. +....         ..-...+.+  +|+++.|+++ ..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            322   22334555556565555555688999999876531 21110         111235556  7888766554 55


Q ss_pred             CCeEEEEcCCC-Ccc--eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee--EeccC-CCceeEEEc-
Q psy9936         153 NGTVTMWSPTV-QKP--LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN--TFRTR-TPINNLAFS-  225 (315)
Q Consensus       153 d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~-~~v~~~~~s-  225 (315)
                      .+.|..||+.. ++.  ...+. .......++++++|+++++....+.|.++|.. + +...  .+... ..+++++|. 
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G-~~~~~~~~~~~~~~p~~~a~~g  264 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R-STTIIAQAEQGVIGSTAVAFGQ  264 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C-CEEEEECGGGTCTTEEEEEECC
T ss_pred             CCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C-CEEEEeecccccCCceEEEEec
Confidence            78999999874 321  12221 11345678999999987777778899999975 4 4422  23333 357899998 


Q ss_pred             --cCC--eEEEEcC
Q psy9936         226 --QRG--LLATSRG  235 (315)
Q Consensus       226 --~~g--~~~~~~~  235 (315)
                        |++  +|+++..
T Consensus       265 ~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          265 TEGDCTAIYVVTNG  278 (306)
T ss_dssp             STTTTTEEEEEECT
T ss_pred             ccCCCCEEEEECCC
Confidence              785  4555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.21  E-value=8.6e-09  Score=82.07  Aligned_cols=179  Identities=7%  Similarity=0.021  Sum_probs=125.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-CEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-IELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-~~~~~   86 (315)
                      ..-...+.|+. +.++.+.+.+|.|+++|+++++.+..+ ........-..+++..|....  ++.+.+||..+ +.+..
T Consensus        54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            34457888874 566677788889999999999988777 555554433344444444443  88999999954 44555


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCC-----CCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK-----GKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      +.....-..++  +++..|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +|.+++..-.+..|.+.|.
T Consensus       132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             EECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            65443333444  567777777778899999999998888765422     235677776 7776666656889999999


Q ss_pred             CCCcceeEeecc-------------cccEEEEEECCCCCEEEEee
Q psy9936         162 TVQKPLASLLCH-------------KAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       162 ~~~~~~~~~~~~-------------~~~i~~~~~sp~g~~l~~~~  193 (315)
                      .+++.+..+...             ..-.+.|+++|+++.|++.+
T Consensus       209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            999988777632             13568999999866554444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.19  E-value=9.3e-10  Score=92.15  Aligned_cols=217  Identities=14%  Similarity=0.126  Sum_probs=139.2

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCc-eeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecC-
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEE-VYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVL-   90 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~-   90 (315)
                      +.++...++|. |.+++.+  |..+|. +++....+..... ....... ++.+++.+.++.|..+|..+......... 
T Consensus        62 ~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~  136 (330)
T 3hxj_A           62 ECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKK  136 (330)
T ss_dssp             EECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSS
T ss_pred             ccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCC
Confidence            45566666664 4444444  777875 5544333332222 2222232 66665555588999999886554444433 


Q ss_pred             CceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEe
Q psy9936          91 NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASL  170 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~  170 (315)
                      ..+.++...+++. ++.++.++.+..||.. ++....+......+.++...+++.+++ ++  +.|..+| .+++.+..+
T Consensus       137 ~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~  210 (330)
T 3hxj_A          137 AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF  210 (330)
T ss_dssp             CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred             ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence            3455666666665 6667778999999998 877766665555677777878887554 44  7899999 777777666


Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         171 LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       171 ~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      ......+.++...++|. |..++.++.+..+|. ++ ..+..+..... +.++.+.++|. ++++.++.+..+++
T Consensus       211 ~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          211 YAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG-TEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TS-CEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred             ccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CC-CEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence            65556678888888886 445666777888874 44 55555554443 45677777774 56666778887776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=6.1e-09  Score=96.11  Aligned_cols=200  Identities=14%  Similarity=0.177  Sum_probs=137.0

Q ss_pred             CCeEEEEEccCceEEEEecCC--C------------------------------ceeEEEEeecCcEEEEEe-CC-----
Q psy9936          31 RGHVAAFDWVRKTLACEMNVM--E------------------------------EVYDIKWLHLETMFAVAQ-KD-----   72 (315)
Q Consensus        31 dg~i~v~~~~~~~~~~~~~~~--~------------------------------~v~~~~~~~~~~~l~~~~-~~-----   72 (315)
                      +|.|+.||..+|+.+..+...  .                              ....+++.|++.++.++. ++     
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            689999999999988766421  0                              012467788777777665 43     


Q ss_pred             --------------eEEEEeCC-CCEEEEeecC----------CceEEEEEcCCCc---eEEEEcCCCeEEEEEccCCeE
Q psy9936          73 --------------WVYIYDNQ-GIELHCLKVL----------NKVTRMEFLPYHF---LLATASEEGYLSWLDTSIGKI  124 (315)
Q Consensus        73 --------------~i~i~~~~-~~~~~~~~~~----------~~v~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~  124 (315)
                                    .|..+|.. ++.+..+...          .++.......+|.   .++.++.+|.++++|..+|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                          39999995 5555444321          1122222233554   788999999999999999988


Q ss_pred             EEEeccCC-CC--------------------------------------eEEEEEcCCCCEEEEEcC-------------
Q psy9936         125 VSDFSAKK-GK--------------------------------------LSVMTQNPYNACICLGHR-------------  152 (315)
Q Consensus       125 ~~~~~~~~-~~--------------------------------------v~~~~~~p~~~~l~~~~~-------------  152 (315)
                      +....... ..                                      -..++++|+..++++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            74432110 00                                      112688898887776521             


Q ss_pred             --------------------------------CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         153 --------------------------------NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       153 --------------------------------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                                                      +|.|..||+.+++.+.++..+ .+.....++..+.++++++.|+.++.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEE
Confidence                                            378999999999988887643 33333456667889999999999999


Q ss_pred             EEccCCCCCeeEeccCCCc--eeEEEccCCe-EEE
Q psy9936         201 WDVRNLEGPLNTFRTRTPI--NNLAFSQRGL-LAT  232 (315)
Q Consensus       201 wd~~~~~~~~~~~~~~~~v--~~~~~s~~g~-~~~  232 (315)
                      ||.+++ +.+..+..+.++  .-+.|..+|. |++
T Consensus       501 ~D~~tG-~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          501 YAADTG-EKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EECCCC-ccceeeeCCCCcccCceEEEECCEEEEE
Confidence            999999 888888776543  5577888994 444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=6.1e-12  Score=107.58  Aligned_cols=173  Identities=7%  Similarity=0.022  Sum_probs=94.1

Q ss_pred             CcEEEEEeCCeEEEEeC-CCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC-eE-EEE
Q psy9936          63 ETMFAVAQKDWVYIYDN-QGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK-LS-VMT  139 (315)
Q Consensus        63 ~~~l~~~~~~~i~i~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~-~~~  139 (315)
                      +.+++.+.++.|+.||. +++.+..+.. ..+.+..+.+++..+++++.|+.|+.||..+|+.+..+..+... +. ...
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~   88 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPC   88 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCce
Confidence            44444445899999998 5666655555 55555556667778888889999999999888876665433110 10 001


Q ss_pred             EcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc
Q psy9936         140 QNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI  219 (315)
Q Consensus       140 ~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v  219 (315)
                      +. ++..+++++.++.+..||.++|+.+..+..+.    ...++|++..+++++.|+.|+.||.+++ +.+..+..+. .
T Consensus        89 ~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~-~  161 (369)
T 2hz6_A           89 RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTR-ELRWNATYFD-Y  161 (369)
T ss_dssp             C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSS-SCCCEEEEEE-E
T ss_pred             Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCC-CEEEeEeccc-c
Confidence            11 34567788889999999999999887776543    2456778889999999999999999998 7665554322 2


Q ss_pred             eeEEEccC----C-eEEEEcCCEEEecCC
Q psy9936         220 NNLAFSQR----G-LLATSRGNIVEFLKP  243 (315)
Q Consensus       220 ~~~~~s~~----g-~~~~~~~~~i~~~~~  243 (315)
                      ..++++++    + .++++.++.+..|++
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             cCccccCCccccceEEEECCCCEEEEEEC
Confidence            33344442    4 466677899998887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.15  E-value=2.7e-08  Score=85.07  Aligned_cols=217  Identities=15%  Similarity=0.083  Sum_probs=137.8

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecC----------CCceeEEEEeecCcEEEEEeCCeEEEEeCC-CCEEEEeec
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNV----------MEEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GIELHCLKV   89 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~~~~~~~~   89 (315)
                      .+..+++++.++.|..+|..+++.+.....          ...+.......++.+++.+.++.|..+|.. ++.+.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            355777788889999999999998776653          222333223335666666668999999985 555544443


Q ss_pred             CCceE-EEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCe-----EEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          90 LNKVT-RMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKL-----SVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        90 ~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v-----~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      ...+. .....  +..+++++.++.+..+|..+|+.+..+.......     ......  +..++++..++.+..+|..+
T Consensus       132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred             CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence            32221 11222  4477888889999999999998887765432111     111222  34677788899999999999


Q ss_pred             CcceeEeeccccc----EEE---EEECC--CCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEc
Q psy9936         164 QKPLASLLCHKAG----IQS---VAVNH--TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSR  234 (315)
Q Consensus       164 ~~~~~~~~~~~~~----i~~---~~~sp--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  234 (315)
                      ++.+.........    +..   +.-.|  .+..++.++.++.+..+|..++ +.+...... ....+....+..++++.
T Consensus       208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-~~~w~~~~~-~~~~~~~~~~~l~~~~~  285 (376)
T 3q7m_A          208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-QIMWKRELG-SVNDFIVDGNRIYLVDQ  285 (376)
T ss_dssp             CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-CEEEEECCC-CEEEEEEETTEEEEEET
T ss_pred             CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-cEEeeccCC-CCCCceEECCEEEEEcC
Confidence            9887766522100    000   11111  2456777888999999999998 666555433 24445554333567777


Q ss_pred             CCEEEecCC
Q psy9936         235 GNIVEFLKP  243 (315)
Q Consensus       235 ~~~i~~~~~  243 (315)
                      ++.+..+++
T Consensus       286 ~g~l~~~d~  294 (376)
T 3q7m_A          286 NDRVMALTI  294 (376)
T ss_dssp             TCCEEEEET
T ss_pred             CCeEEEEEC
Confidence            778887665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.15  E-value=3.4e-08  Score=84.37  Aligned_cols=216  Identities=12%  Similarity=0.106  Sum_probs=139.5

Q ss_pred             CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeC-CCCEEEEeecCCce------
Q psy9936          21 NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN-QGIELHCLKVLNKV------   93 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~~~~~~~~~~~v------   93 (315)
                      ++..+++++.++.|..+|..+++.+........+.......++.+++.+.++.|..+|. +++.+.......++      
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            34577778889999999999999887766443333222233566666556899999998 56555554433222      


Q ss_pred             EEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCC-------eEEEEEcC--CCCEEEEEcCCCeEEEEcCCCC
Q psy9936          94 TRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK-------LSVMTQNP--YNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        94 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------v~~~~~~p--~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      ......  +..+++++.++.+..+|..+|+.+.........       +..+...|  .+..++.++.++.+..+|.+++
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence            112222  346778888999999999999887765432110       00011111  2456777888999999999999


Q ss_pred             cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-CC-CceeEEEccCCeEEEEcCCEEEecC
Q psy9936         165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-RT-PINNLAFSQRGLLATSRGNIVEFLK  242 (315)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~-~v~~~~~s~~g~~~~~~~~~i~~~~  242 (315)
                      +.+.....  .....+..  ++..++.++.++.+..+|..++ +.+..... .. .+..+....+..++++.++.+..++
T Consensus       260 ~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          260 QIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             CEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred             cEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEE
Confidence            87766542  23344443  3667888888999999999998 66655542 22 2444444433356667788888877


Q ss_pred             C
Q psy9936         243 P  243 (315)
Q Consensus       243 ~  243 (315)
                      +
T Consensus       335 ~  335 (376)
T 3q7m_A          335 V  335 (376)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.13  E-value=1.2e-08  Score=81.24  Aligned_cols=185  Identities=9%  Similarity=-0.013  Sum_probs=124.1

Q ss_pred             eEEEEecCCCc--eeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEEeecCCceEEEEEcCCCceEE-EEcCCCeEEEE
Q psy9936          43 TLACEMNVMEE--VYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHCLKVLNKVTRMEFLPYHFLLA-TASEEGYLSWL  117 (315)
Q Consensus        43 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~  117 (315)
                      +.+.++.|...  ...+.|+. +.++.+++ +|.|+++|+. ++.+..+ ...........+++..|+ ..-.++.+.+|
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred             EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence            45666666544  47888873 45544444 6789999995 4443444 333333322233444444 44568899999


Q ss_pred             EccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc--c---ccEEEEEECCCCCEEEEe
Q psy9936         118 DTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH--K---AGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~sp~g~~l~~~  192 (315)
                      |..+.+.+.++..... -..++  +++..|+.+..++.|.++|..+.+.+.++...  .   ..++.+.|. +|+.++..
T Consensus       122 D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          122 SGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             ETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            9999999998875332 23343  56787877777899999999999888877632  2   245677876 77666555


Q ss_pred             eCCCcEEEEEccCCCCCeeEeccC--------------CCceeEEEccCC-eEEEEc
Q psy9936         193 AGDSQLRIWDVRNLEGPLNTFRTR--------------TPINNLAFSQRG-LLATSR  234 (315)
Q Consensus       193 ~~d~~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~s~~g-~~~~~~  234 (315)
                      -.++.|.+.|.+++ +.+..+...              .-.+.|+|+|++ ++++++
T Consensus       198 w~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          198 WHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            56789999999998 877776532              125889999976 455554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.13  E-value=5.2e-08  Score=76.92  Aligned_cols=186  Identities=11%  Similarity=0.040  Sum_probs=125.4

Q ss_pred             eEEEEecCCC--ceeEEEEeecCcEEEEEe-C--CeEEEEeCC-CCEEEEeecCCceEEEEEcCCCceE-EEEcCCCeEE
Q psy9936          43 TLACEMNVME--EVYDIKWLHLETMFAVAQ-K--DWVYIYDNQ-GIELHCLKVLNKVTRMEFLPYHFLL-ATASEEGYLS  115 (315)
Q Consensus        43 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-~--~~i~i~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~  115 (315)
                      +.+.++.|..  -...+.|++ +.++.+++ .  ..|+.+|+. ++.+..+.-..........+.+..| ...-.++.+.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            4566677654  366899986 55555544 3  489999995 4555555444444333333334444 4445688999


Q ss_pred             EEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc-----ccEEEEEECCCCCEEE
Q psy9936         116 WLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK-----AGIQSVAVNHTGTYMA  190 (315)
Q Consensus       116 ~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~sp~g~~l~  190 (315)
                      +||..+.+.+.++...... ..++  +++..|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+.++
T Consensus        89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya  164 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA  164 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence            9999999999988754322 3444  567777777778999999999998888776321     345667765 677665


Q ss_pred             EeeCCCcEEEEEccCCCCCeeEeccC--------------CCceeEEEccCC-eEEEEc
Q psy9936         191 TSAGDSQLRIWDVRNLEGPLNTFRTR--------------TPINNLAFSQRG-LLATSR  234 (315)
Q Consensus       191 ~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~v~~~~~s~~g-~~~~~~  234 (315)
                      ..-.+..|.+.|.+++ +.+..+...              .-.+.|+++|++ ++.+++
T Consensus       165 nvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          165 NVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            5556779999999998 877776532              125889999976 555555

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=1.6e-07  Score=81.80  Aligned_cols=151  Identities=15%  Similarity=0.134  Sum_probs=101.8

Q ss_pred             cEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC--C----eEEEEeCCCCEE
Q psy9936          12 GIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK--D----WVYIYDNQGIEL   84 (315)
Q Consensus        12 ~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~----~i~i~~~~~~~~   84 (315)
                      .+..++++| ++..|.++...+.|+.+|+.++..............++|+++++.|.++..  +    .+..++..+...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            457889998 355555554448899999988776655555566889999999985555542  1    344455443221


Q ss_pred             --EEeecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEecc-CCCCeEEEEEcCCCCEEE-EEcCCCeEEEE
Q psy9936          85 --HCLKVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDFSA-KKGKLSVMTQNPYNACIC-LGHRNGTVTMW  159 (315)
Q Consensus        85 --~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~-~~~~d~~i~i~  159 (315)
                        ..+........++++| ++.++++-..++.|..++...+........ .......++|+|+|++|+ +-...+.|..+
T Consensus       218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          218 VITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             SEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence              2333445667889999 677666666788999999986654222221 223578899999999554 44567889998


Q ss_pred             cCC
Q psy9936         160 SPT  162 (315)
Q Consensus       160 d~~  162 (315)
                      +.+
T Consensus       298 ~~d  300 (430)
T 3tc9_A          298 DYD  300 (430)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.03  E-value=1.6e-07  Score=84.69  Aligned_cols=221  Identities=12%  Similarity=0.074  Sum_probs=139.9

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCC-----ceeEEEEeecCcEEEEEe------CCeEEEEeCC-CCEEEEeec
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVME-----EVYDIKWLHLETMFAVAQ------KDWVYIYDNQ-GIELHCLKV   89 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------~~~i~i~~~~-~~~~~~~~~   89 (315)
                      +..+++++.++.+..+|..+|+.+.......     .+.+--...++.+++.+.      ++.|+.+|.. ++.+.....
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            4577778889999999999999887765322     222211112565555544      6899999994 565554432


Q ss_pred             CCce---------------------------------------EEEEEcCCCceEEEEcCC----------------CeE
Q psy9936          90 LNKV---------------------------------------TRMEFLPYHFLLATASEE----------------GYL  114 (315)
Q Consensus        90 ~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------~~i  114 (315)
                      ....                                       ..+++.+....++.++.+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            2111                                       135667766667666532                369


Q ss_pred             EEEEccCCeEEEEeccC--C-------CCeEEEEEcCCCC---EEEEEcCCCeEEEEcCCCCcceeEeeccc--------
Q psy9936         115 SWLDTSIGKIVSDFSAK--K-------GKLSVMTQNPYNA---CICLGHRNGTVTMWSPTVQKPLASLLCHK--------  174 (315)
Q Consensus       115 ~~~d~~~~~~~~~~~~~--~-------~~v~~~~~~p~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------  174 (315)
                      ..+|..+|+.+-.++..  .       ....-+...++|+   .++.++.+|.+.++|..+++.+..+....        
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~  354 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccc
Confidence            99999999988776532  1       1111123334674   57788899999999999998876654211        


Q ss_pred             -----ccE--------------------------EEEEECCCCCEEEEee------------------------------
Q psy9936         175 -----AGI--------------------------QSVAVNHTGTYMATSA------------------------------  193 (315)
Q Consensus       175 -----~~i--------------------------~~~~~sp~g~~l~~~~------------------------------  193 (315)
                           .++                          ..++++|+..++++.+                              
T Consensus       355 d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  434 (571)
T 2ad6_A          355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence                 111                          1357788777666553                              


Q ss_pred             -------CCCcEEEEEccCCCCCeeEeccCCCceeEEE-ccCCe-EEEEcCCEEEecCC
Q psy9936         194 -------GDSQLRIWDVRNLEGPLNTFRTRTPINNLAF-SQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       194 -------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~g~-~~~~~~~~i~~~~~  243 (315)
                             .++.+..||+.++ +.+..+....++..... ..++. ++++.++.+..++.
T Consensus       435 ~~~~~~~~~g~l~a~D~~tG-~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~  492 (571)
T 2ad6_A          435 PNGPTKKEMGQIRAFDLTTG-KAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTC-CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccCCCCCCeEEEEECCCC-CEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence                   3478999999998 77777665544433322 23454 55566888886665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.02  E-value=6.1e-07  Score=74.40  Aligned_cols=199  Identities=16%  Similarity=0.089  Sum_probs=124.0

Q ss_pred             ceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCC--CeEEEEE
Q psy9936          42 KTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEE--GYLSWLD  118 (315)
Q Consensus        42 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~~~d  118 (315)
                      .+.+..+........++|.++++++++.. ++.|+.||.++.....+.....+..+++.++|+++++....  ..|..+|
T Consensus        22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence            44455554445678899999998777764 78999999987665555555678899999999866655332  2477788


Q ss_pred             ccCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc-eeEee---------cccccEEEEEECCCCC
Q psy9936         119 TSIGKIVSDFSA-KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP-LASLL---------CHKAGIQSVAVNHTGT  187 (315)
Q Consensus       119 ~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~---------~~~~~i~~~~~sp~g~  187 (315)
                      ..+++....... .......++..+++..+++...++.|.++|..+++. +....         ..-...+.+  +|++.
T Consensus       102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~  179 (306)
T 2p4o_A          102 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN  179 (306)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred             CCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence            777765433221 222345666666665555555688999999875421 11000         111234555  78887


Q ss_pred             EEEEe-eCCCcEEEEEccC-CCCC--eeEeccCCCceeEEEccCCeEEEEc--CCEEEecCC
Q psy9936         188 YMATS-AGDSQLRIWDVRN-LEGP--LNTFRTRTPINNLAFSQRGLLATSR--GNIVEFLKP  243 (315)
Q Consensus       188 ~l~~~-~~d~~i~iwd~~~-~~~~--~~~~~~~~~v~~~~~s~~g~~~~~~--~~~i~~~~~  243 (315)
                      +|+.+ ...+.|..|++.. + ..  ...+........++++++|.+.++.  .+.|..+++
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g-~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTD-KPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTS-CBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             EEEEEeCCCCEEEEEEeCCCC-CCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            66555 4567899999875 2 21  2222222346788999998544432  456665544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.99  E-value=2.6e-06  Score=71.99  Aligned_cols=228  Identities=11%  Similarity=-0.018  Sum_probs=142.7

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEee
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~   88 (315)
                      +...|.+..++ .+|+.+. ...|+..++.+............+..++|.+.+..|..+.  .+.|+.+++++.....+.
T Consensus        34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            34456666663 3555443 4468888887766655555556688999998655555543  678999999765443332


Q ss_pred             --cCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCC-CeEEEEcCCC
Q psy9936          89 --VLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRN-GTVTMWSPTV  163 (315)
Q Consensus        89 --~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d-~~i~i~d~~~  163 (315)
                        .......+++.+.+ .++++-...+.|.+.++........+.........++++|.+..|+.. ... +.|..++++.
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence              22456789999854 455555667889999987543333333334567899999966655544 344 7899998874


Q ss_pred             CcceeEe-ecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCCeEEEE-cCCEEE
Q psy9936         164 QKPLASL-LCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRGLLATS-RGNIVE  239 (315)
Q Consensus       164 ~~~~~~~-~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~-~~~~i~  239 (315)
                      . ....+ ...-...+.++++|++..|+.+. ..+.|..+|+... .....+... .....+++..+..+.+. ..+.|.
T Consensus       192 ~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~  269 (349)
T 3v64_C          192 S-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSIN  269 (349)
T ss_dssp             C-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEETTEEEEEETTTTEEE
T ss_pred             C-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEEECCEEEEecCCCCeEE
Confidence            3 33333 22334678999998776666554 5567999998764 333323222 24567777544455554 355665


Q ss_pred             ecC
Q psy9936         240 FLK  242 (315)
Q Consensus       240 ~~~  242 (315)
                      ..+
T Consensus       270 ~~~  272 (349)
T 3v64_C          270 SAN  272 (349)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.99  E-value=1.8e-07  Score=84.45  Aligned_cols=212  Identities=17%  Similarity=0.129  Sum_probs=134.4

Q ss_pred             CEEEEEcC------CCeEEEEEccCceEEEEecCCCce---------------------------------------eEE
Q psy9936          23 RHLLLGGK------RGHVAAFDWVRKTLACEMNVMEEV---------------------------------------YDI   57 (315)
Q Consensus        23 ~~l~~~~~------dg~i~v~~~~~~~~~~~~~~~~~v---------------------------------------~~~   57 (315)
                      ..+++++.      ++.|+.+|..+|+.+..+......                                       ..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555544      789999999999988776532211                                       124


Q ss_pred             EEeecCcEEEEEe-C----------------CeEEEEeCC-CCEEEEeecC----------CceEEEEEcCCCc---eEE
Q psy9936          58 KWLHLETMFAVAQ-K----------------DWVYIYDNQ-GIELHCLKVL----------NKVTRMEFLPYHF---LLA  106 (315)
Q Consensus        58 ~~~~~~~~l~~~~-~----------------~~i~i~~~~-~~~~~~~~~~----------~~v~~~~~~~~~~---~l~  106 (315)
                      ++.+....+..+. +                +.|..+|.. ++.+......          ....-+...++|+   .++
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~  320 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS  320 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence            5555544444443 1                258889985 4544444321          1111122234673   677


Q ss_pred             EEcCCCeEEEEEccCCeEEEEeccCC-------------CCe--------------------------EEEEEcCCCCEE
Q psy9936         107 TASEEGYLSWLDTSIGKIVSDFSAKK-------------GKL--------------------------SVMTQNPYNACI  147 (315)
Q Consensus       107 ~~~~d~~i~~~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~p~~~~l  147 (315)
                      .++.+|.++++|..+|+.+..+....             .++                          ..++++|+..++
T Consensus       321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  400 (571)
T 2ad6_A          321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL  400 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence            88899999999999998877654221             011                          235788887776


Q ss_pred             EEEc-------------------------------------CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEE
Q psy9936         148 CLGH-------------------------------------RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMA  190 (315)
Q Consensus       148 ~~~~-------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~  190 (315)
                      ++..                                     .++.|..||+.+++.+.++.. ...+....+...+..++
T Consensus       401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~  479 (571)
T 2ad6_A          401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVW  479 (571)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEE
T ss_pred             EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEE
Confidence            6543                                     357899999999998877753 22222222333466777


Q ss_pred             EeeCCCcEEEEEccCCCCCeeEeccCCCc--eeEEEccCCe-EEEEcCC
Q psy9936         191 TSAGDSQLRIWDVRNLEGPLNTFRTRTPI--NNLAFSQRGL-LATSRGN  236 (315)
Q Consensus       191 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~g~-~~~~~~~  236 (315)
                      +++.|+.++.||.+++ +.+..+....++  ..+.+..+|. ++++.++
T Consensus       480 ~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          480 YATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             EECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEcCCCeEEEEECCCC-CEEEEEeCCCCcEeeeEEEEECCEEEEEEECC
Confidence            8999999999999999 888888766543  3345667884 5554433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.99  E-value=6.1e-07  Score=78.11  Aligned_cols=192  Identities=13%  Similarity=0.118  Sum_probs=122.6

Q ss_pred             cEEEEEEcCC--CCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCC-----eEEEEeCCCCE-
Q psy9936          12 GIYRMNYTKN--GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD-----WVYIYDNQGIE-   83 (315)
Q Consensus        12 ~v~~~~~s~~--~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~i~i~~~~~~~-   83 (315)
                      .+..++|+|+  +..|..+...+.|+.++..++..............++|+++|.++++...+     .+...+..+.. 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            4678999995  344444443388999999888876665555668999999999955554421     24444432211 


Q ss_pred             -EEEeecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEe-cc-CCCCeEEEEEcCCCCEEEE-EcCCCeEEE
Q psy9936          84 -LHCLKVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDF-SA-KKGKLSVMTQNPYNACICL-GHRNGTVTM  158 (315)
Q Consensus        84 -~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~-~~~~v~~~~~~p~~~~l~~-~~~d~~i~i  158 (315)
                       ...+........++++| ++.++++-..++.|+.+|..++.....+ .. .......++|+|+|++|+. -...+.|..
T Consensus       220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence             12233445567789999 6666656667788999998877652222 21 1223457999999995554 455789999


Q ss_pred             EcCC--CCcc--eeEeecc---------------cccEEEEEE---------CCCCCEEEEeeCCCcEEEEEc
Q psy9936         159 WSPT--VQKP--LASLLCH---------------KAGIQSVAV---------NHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       159 ~d~~--~~~~--~~~~~~~---------------~~~i~~~~~---------sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      ++..  ++..  ...+.+.               -.....+++         .++|.++++-...+.|+.++.
T Consensus       300 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          300 VDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            7765  2321  1122211               124677999         777877777667778998885

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.98  E-value=3.8e-07  Score=76.20  Aligned_cols=191  Identities=10%  Similarity=-0.007  Sum_probs=123.5

Q ss_pred             cEEEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEec-----CCCceeEEEEee-cCcEEEEEeC-------------
Q psy9936          12 GIYRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMN-----VMEEVYDIKWLH-LETMFAVAQK-------------   71 (315)
Q Consensus        12 ~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-------------   71 (315)
                      .+.++++.+ +|.+++ +...+.|..+|..++.......     .......+++.+ +|+++++...             
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            578899998 665544 4344458888877664322211     113468899999 8987776532             


Q ss_pred             -----CeEEEEeCCCCEEEEe-ecCCceEEEEEcCCCceEEEE-cCCCeEEEEEccCCe--EEEEeccCCCCeEEEEEcC
Q psy9936          72 -----DWVYIYDNQGIELHCL-KVLNKVTRMEFLPYHFLLATA-SEEGYLSWLDTSIGK--IVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        72 -----~~i~i~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~p  142 (315)
                           +.|..+|..+.....+ ........++++|+++.|+++ ...+.|.+|++....  ....+....+ ...+++.+
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~  238 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA  238 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred             ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence                 5788899865554433 233556789999999866555 566899999987421  1111111233 78899999


Q ss_pred             CCCEEEEEcC----------CCeEEEEcCCCCcceeEeeccc----ccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         143 YNACICLGHR----------NGTVTMWSPTVQKPLASLLCHK----AGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       143 ~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +|++.++...          .+.|..+|.. ++.+..+....    ..++++++ .+++++++....+.|..+++...
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            9986666544          4678889875 66666665332    34666666 46666666667788999988643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.97  E-value=8.6e-06  Score=67.78  Aligned_cols=217  Identities=10%  Similarity=0.002  Sum_probs=135.8

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC----CEEEE-ee-cCCceEE
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG----IELHC-LK-VLNKVTR   95 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~----~~~~~-~~-~~~~v~~   95 (315)
                      +|+.+.. ..|+..++.+.+....+.....+..+.|.+.+..|..+.  .+.|+.+++.+    ..... +. .......
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            4555443 469999998877666666566788999998765555543  67999999865    22222 22 2245688


Q ss_pred             EEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-C-CeEEEEcCCCCcceeEee-
Q psy9936          96 MEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-N-GTVTMWSPTVQKPLASLL-  171 (315)
Q Consensus        96 ~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~-  171 (315)
                      +++.+.+ +++++-...+.|.++++........+.........++++|.+..|+.+.. . +.|..+++. +.....+. 
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE
Confidence            9998754 45555567889999998754333333333456789999997665555543 2 688888886 33333332 


Q ss_pred             cccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCeEEEE-cCCEEEecCC
Q psy9936         172 CHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLLATS-RGNIVEFLKP  243 (315)
Q Consensus       172 ~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~~~~-~~~~i~~~~~  243 (315)
                      ..-...+.++++|++..|+.+. ..+.|..+|+... .........   .....+++..+..+.+. ..+.|..+++
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence            2335678999999877666554 5568999998753 322222221   23567777654445444 3566665543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.96  E-value=2.7e-06  Score=68.00  Aligned_cols=191  Identities=9%  Similarity=0.077  Sum_probs=127.0

Q ss_pred             CCcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecC--CCceeEEEEeecCcEEEEEe-CCeEEEEeCC--CC-
Q psy9936          10 QFGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNV--MEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ--GI-   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~--~~-   82 (315)
                      ...+..++|+|++..| ++...++.|...|.. ++....+..  ....-.+++.+++.++++.. ++.+.++++.  +. 
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            5679999999987655 456678889999987 887777653  34677888988888766553 6788888863  22 


Q ss_pred             -EEEEee-------cCCceEEEEEcCCCceEEEEcCCCeEEEEEcc---CCeEEEEec-------cCCCCeEEEEEcCCC
Q psy9936          83 -ELHCLK-------VLNKVTRMEFLPYHFLLATASEEGYLSWLDTS---IGKIVSDFS-------AKKGKLSVMTQNPYN  144 (315)
Q Consensus        83 -~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~-------~~~~~v~~~~~~p~~  144 (315)
                       .+....       .......++|+|.++.|+++.......+|.+.   ....+..+.       .+...+.+++++|..
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence             112221       12346899999998877777766555555553   111112111       123457889999954


Q ss_pred             -CEEEEEcCCCeEEEEcCCCCcceeEeeccc---------ccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         145 -ACICLGHRNGTVTMWSPTVQKPLASLLCHK---------AGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       145 -~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                       ++++.......+.++|.. ++.+..+.-..         .....|+|.|+|+++++ +..+.++.+.-
T Consensus       185 g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence             466667778899999977 55555544221         25689999999985544 67776766643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.94  E-value=8e-07  Score=80.31  Aligned_cols=156  Identities=12%  Similarity=0.094  Sum_probs=101.3

Q ss_pred             EEEcCCCCE----EEEEcCCCeEEEEEccCceEEEEecCCC-----ceeEEEEeecCcEEEEEe------CCeEEEEeCC
Q psy9936          16 MNYTKNGRH----LLLGGKRGHVAAFDWVRKTLACEMNVME-----EVYDIKWLHLETMFAVAQ------KDWVYIYDNQ   80 (315)
Q Consensus        16 ~~~s~~~~~----l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------~~~i~i~~~~   80 (315)
                      ++++|.+..    |++++.++.|.-+|..+|+.+.......     .+.+--...++.+++.+.      ++.|+-+|..
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~  190 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK  190 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECC
Confidence            455444444    7788889999999999999887765322     222211122565555443      6899999985


Q ss_pred             -CCEEEEeecCCce---------------------------------------EEEEEcCCCceEEEEcCC---------
Q psy9936          81 -GIELHCLKVLNKV---------------------------------------TRMEFLPYHFLLATASEE---------  111 (315)
Q Consensus        81 -~~~~~~~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~~d---------  111 (315)
                       ++.+.......+.                                       ..+++.+...+++.++.+         
T Consensus       191 TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r  270 (599)
T 1w6s_A          191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR  270 (599)
T ss_dssp             TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             CCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence             5555544322111                                       134566777777777655         


Q ss_pred             -------CeEEEEEccCCeEEEEeccCCC---------CeEEEEEc-CCC---CEEEEEcCCCeEEEEcCCCCcceeEee
Q psy9936         112 -------GYLSWLDTSIGKIVSDFSAKKG---------KLSVMTQN-PYN---ACICLGHRNGTVTMWSPTVQKPLASLL  171 (315)
Q Consensus       112 -------~~i~~~d~~~~~~~~~~~~~~~---------~v~~~~~~-p~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~  171 (315)
                             +.|..+|..+|+.+-.++....         ...-+... .+|   ..++.++.+|.+.++|.++++.+....
T Consensus       271 ~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                   3799999999998877654221         11112222 567   467778999999999999998876654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.93  E-value=3.2e-06  Score=79.53  Aligned_cols=223  Identities=7%  Similarity=0.026  Sum_probs=148.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec---------CCCceeEEEEeecCc-EEEEEeCCeEEEEeC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN---------VMEEVYDIKWLHLET-MFAVAQKDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~l~~~~~~~i~i~~~   79 (315)
                      ...|.++...++|.+. .|+.++.|..|+..+++......         ....|.++...+++. +.+.+.++-|..++.
T Consensus       356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            4568999999888654 46677679999988776543321         134688888888898 666555678999998


Q ss_pred             CCCEEEEeec------CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec------cCCCCeEEEEEcCCCCEE
Q psy9936          80 QGIELHCLKV------LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS------AKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        80 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l  147 (315)
                      .+.....+..      ...|.++...++|.+.+.. .+ -+.+||..+++......      .....|.++...++|++.
T Consensus       435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  512 (795)
T 4a2l_A          435 NSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW  512 (795)
T ss_dssp             TTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred             CCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE
Confidence            7665555432      2568899888888755444 44 58899988765433221      123568999999999866


Q ss_pred             EEEcCCCeEEEEcCCCCcceeEee-------cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-----
Q psy9936         148 CLGHRNGTVTMWSPTVQKPLASLL-------CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-----  215 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----  215 (315)
                      +...  +.+..||..+++.  .+.       .....|.++...++|.+.+... . -+..||..+.  .+..+..     
T Consensus       513 igt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~--~~~~~~~~~gl~  584 (795)
T 4a2l_A          513 IGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK--QIKRYNTTNGLP  584 (795)
T ss_dssp             EEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT--EEEEECGGGTCS
T ss_pred             EEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC--cEEEeCCCCCCc
Confidence            5443  4588888876653  222       1345789999999998655443 3 5888988764  3333322     


Q ss_pred             CCCceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         216 RTPINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       216 ~~~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      ...|.++..+++|.+-++.++-+..++|
T Consensus       585 ~~~i~~i~~d~~g~lWi~t~~Gl~~~~~  612 (795)
T 4a2l_A          585 NNVVYGILEDSFGRLWLSTNRGISCFNP  612 (795)
T ss_dssp             CSCEEEEEECTTSCEEEEETTEEEEEET
T ss_pred             hhheEEEEECCCCCEEEEcCCceEEEcC
Confidence            1247889999988654444555555555

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.92  E-value=2.6e-06  Score=80.16  Aligned_cols=224  Identities=11%  Similarity=0.055  Sum_probs=150.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-------CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-------VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~   82 (315)
                      ...|.++...++|.+. .|+.++.|..|+..++.......       ....|.++...++|.+.+.+.++-|..|+....
T Consensus       309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTC
T ss_pred             CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCC
Confidence            4679999999988654 46666679999876654332211       134588888888888887777778999998655


Q ss_pred             EEEEeec----------CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec----cCCCCeEEEEEcCCCCEEE
Q psy9936          83 ELHCLKV----------LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS----AKKGKLSVMTQNPYNACIC  148 (315)
Q Consensus        83 ~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~  148 (315)
                      ....+..          ...|.++...+++..|.+|+.++-+..||..+++......    .....|.++...++|++.+
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred             cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence            4444321          2568899888888756677777789999988776443321    1245689999988887555


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeec-------ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec-------
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLC-------HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR-------  214 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------  214 (315)
                      .. . +.+.+||..+++.. .+..       ....|.++...++|.+.+...  +-+..||..+. ..  .+.       
T Consensus       468 gt-~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~-~~--~~~~~~~~~~  539 (795)
T 4a2l_A          468 GT-L-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL-DI--QKASILPVSN  539 (795)
T ss_dssp             EE-S-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT-EE--EECCCSCSCG
T ss_pred             Ee-c-CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC-eE--EEecCCCCCC
Confidence            44 3 45888998876432 2221       235789999999998665444  45888998775 33  222       


Q ss_pred             -cCCCceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         215 -TRTPINNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       215 -~~~~v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                       ....|.++..+++|. ++++.+ -+..+++
T Consensus       540 l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~  569 (795)
T 4a2l_A          540 VTKLFTNCIYEASNGIIWVGTRE-GFYCFNE  569 (795)
T ss_dssp             GGGSCEEEEEECTTSCEEEEESS-CEEEEET
T ss_pred             CCCCeeEEEEECCCCCEEEEeCC-CceeECC
Confidence             112478899999985 555555 4555544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.92  E-value=7.7e-07  Score=83.07  Aligned_cols=190  Identities=10%  Similarity=0.001  Sum_probs=112.3

Q ss_pred             cEEEEEEc-CCCCEEEEEcC-C----CeEEEEEccCc-eEEEEecCCCceeEEEEeecCcEEEEEe-C-----CeEEEEe
Q psy9936          12 GIYRMNYT-KNGRHLLLGGK-R----GHVAAFDWVRK-TLACEMNVMEEVYDIKWLHLETMFAVAQ-K-----DWVYIYD   78 (315)
Q Consensus        12 ~v~~~~~s-~~~~~l~~~~~-d----g~i~v~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-----~~i~i~~   78 (315)
                      .+...+|| |||++||.+.. +    ..|+++|+.++ +.+.. ........+.|+||++.|+... +     ..|++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            56788999 99998886533 2    35999999988 63211 0111235789999997776654 3     2688888


Q ss_pred             CCCC---EEEEee--cCCceEEEEEcCCCceEEEEcC---CCeEEEEEccCCe-EE--EEe-ccCCCCeEEEEEcCCCCE
Q psy9936          79 NQGI---ELHCLK--VLNKVTRMEFLPYHFLLATASE---EGYLSWLDTSIGK-IV--SDF-SAKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        79 ~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~-~~~~~~v~~~~~~p~~~~  146 (315)
                      +.+.   ....+.  .......+.|+|||++|+..+.   ...|.++|+.++. ..  ..+ .........+.|+..+.+
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            8542   122222  2244667899999998877653   3458889988752 12  333 333445566665544444


Q ss_pred             EEEEcCC----CeEEEEcCCCCcceeE-eecccc--cEEEEEECCCCCEEEEeeCCCc--EEEEEc
Q psy9936         147 ICLGHRN----GTVTMWSPTVQKPLAS-LLCHKA--GIQSVAVNHTGTYMATSAGDSQ--LRIWDV  203 (315)
Q Consensus       147 l~~~~~d----~~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~sp~g~~l~~~~~d~~--i~iwd~  203 (315)
                      ++....+    ..|..+|+.++..... +..+..  .+..+.+. .+.++++...++.  |.++++
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            4454443    3677788765322222 322333  44555554 2334555666775  555665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.91  E-value=4.6e-06  Score=71.46  Aligned_cols=227  Identities=11%  Similarity=-0.013  Sum_probs=142.1

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEee--
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCLK--   88 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~--   88 (315)
                      -.|.+..+ ..+|+.+. ...|+.+++.+............+..++|.+.+..|..+.  .+.|+.+++++.....+.  
T Consensus        79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             CeECCccc-cceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            34555555 33555443 4568889988776655555556788999998655555443  678999999776544432  


Q ss_pred             cCCceEEEEEcCCC-ceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc-CC-CeEEEEcCCCCc
Q psy9936          89 VLNKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH-RN-GTVTMWSPTVQK  165 (315)
Q Consensus        89 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d-~~i~i~d~~~~~  165 (315)
                      .......+++.+.+ .++++-...+.|.++++........+.........++++|.+..|+... .. +.|..+++....
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence            22456788998754 4555556677899998874433333333345678999999776555544 34 689888887443


Q ss_pred             ceeEeecccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCCeEEEE-cCCEEEecC
Q psy9936         166 PLASLLCHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRGLLATS-RGNIVEFLK  242 (315)
Q Consensus       166 ~~~~~~~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~-~~~~i~~~~  242 (315)
                      ........-...+.|+|+|++..|+.+ +..+.|..+|+... .....+... .....+++..+.+|.+. ..+.|..++
T Consensus       237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence            222222233467899999876666555 45667999998754 333333222 24677777544455554 356666544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.90  E-value=6e-06  Score=69.76  Aligned_cols=201  Identities=5%  Similarity=-0.094  Sum_probs=128.2

Q ss_pred             CcEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEE-EEEe-CCeEEEEeCCCCEEEE
Q psy9936          11 FGIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMF-AVAQ-KDWVYIYDNQGIELHC   86 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~-~~~i~i~~~~~~~~~~   86 (315)
                      ..+..++|++.+..|. +-...+.|+.+++.+......+. .......+++.+.+..| .+.. .+.|.+.++++.....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4467899997655554 44567889999987765444333 23456788888754444 4433 5789999997754433


Q ss_pred             ee--cCCceEEEEEcCCCceEEEE-cCC-CeEEEEEccCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEc
Q psy9936          87 LK--VLNKVTRMEFLPYHFLLATA-SEE-GYLSWLDTSIGKIVSDF-SAKKGKLSVMTQNPYNACICLG-HRNGTVTMWS  160 (315)
Q Consensus        87 ~~--~~~~v~~~~~~~~~~~l~~~-~~d-~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d  160 (315)
                      +.  .......++++|.+..|+.+ ... +.|..+++... ....+ ...-...+.++++|++..|+.+ ...+.|..+|
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            32  23667899999965554444 444 78999988643 33333 2233457899999877655554 4567899999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      +........+.........+++ ..+.++++-...+.|..++..++ .....+.
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G-~~~~~i~  283 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG-KNQEIIR  283 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC-CSCEEEE
T ss_pred             CCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC-CccEEec
Confidence            8754332223333445677888 34555555556778888886666 5555554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.89  E-value=4.1e-07  Score=83.70  Aligned_cols=202  Identities=18%  Similarity=0.242  Sum_probs=132.3

Q ss_pred             CCeEEEEEccCceEEEEecCC--Cc------------------------------eeEEEEeecCcEEEEEe-CC-----
Q psy9936          31 RGHVAAFDWVRKTLACEMNVM--EE------------------------------VYDIKWLHLETMFAVAQ-KD-----   72 (315)
Q Consensus        31 dg~i~v~~~~~~~~~~~~~~~--~~------------------------------v~~~~~~~~~~~l~~~~-~~-----   72 (315)
                      +|.|+.+|..+|+.+..+...  .+                              ...+++.|+..++.++. ++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            588999999999988776521  10                              11357777666666654 33     


Q ss_pred             --------------eEEEEeCC-CCEEEEeecC----------CceEEEEEcCCCc---eEEEEcCCCeEEEEEccCCeE
Q psy9936          73 --------------WVYIYDNQ-GIELHCLKVL----------NKVTRMEFLPYHF---LLATASEEGYLSWLDTSIGKI  124 (315)
Q Consensus        73 --------------~i~i~~~~-~~~~~~~~~~----------~~v~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~  124 (315)
                                    .|..+|.. ++.+......          .+.....+..+|+   .++.++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          48889984 5544444321          2222233334664   688899999999999999988


Q ss_pred             EEEeccCC-----------CC-------------------------eEEEEEcCCCCEEEEE------------------
Q psy9936         125 VSDFSAKK-----------GK-------------------------LSVMTQNPYNACICLG------------------  150 (315)
Q Consensus       125 ~~~~~~~~-----------~~-------------------------v~~~~~~p~~~~l~~~------------------  150 (315)
                      +.......           +.                         -..++++|+..++++.                  
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            74432211           00                         0126778876665541                  


Q ss_pred             ------------------cCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         151 ------------------HRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       151 ------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                                        ..+|.|..||+.+++.+.+...+ .+.....+...+.++++++.|+.++.||.+++ +.+..
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~  494 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQ  494 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcC-hhheE
Confidence                              12488999999999988777632 33333344556788999999999999999999 88888


Q ss_pred             eccCCCc--eeEEEccCCe-EEEEc
Q psy9936         213 FRTRTPI--NNLAFSQRGL-LATSR  234 (315)
Q Consensus       213 ~~~~~~v--~~~~~s~~g~-~~~~~  234 (315)
                      +....++  .-+.+..+|. +++.+
T Consensus       495 ~~~~~~~~~~p~~~~~~G~~yva~~  519 (668)
T 1kv9_A          495 FEAQSGIVAAPMTFELAGRQYVAIM  519 (668)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ecCCCCcccCceEEEECCEEEEEEE
Confidence            8776543  3455566774 44433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.89  E-value=1.9e-06  Score=68.93  Aligned_cols=189  Identities=6%  Similarity=0.109  Sum_probs=124.6

Q ss_pred             CCceeEEEEeecCcEE-EEEe-CCeEEEEeCCCCEEEEeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE--
Q psy9936          51 MEEVYDIKWLHLETMF-AVAQ-KDWVYIYDNQGIELHCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI--  124 (315)
Q Consensus        51 ~~~v~~~~~~~~~~~l-~~~~-~~~i~i~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--  124 (315)
                      ...+..++|.|++..| ++.. ++.|...|.++..+..+..  ......+++.+++.++++.-.++.+.++++.....  
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            3569999999976544 4444 5789999998777666543  35788899999888767666678899998865432  


Q ss_pred             -EEEec------cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCC---CCcceeEee-------cccccEEEEEECCCC-
Q psy9936         125 -VSDFS------AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT---VQKPLASLL-------CHKAGIQSVAVNHTG-  186 (315)
Q Consensus       125 -~~~~~------~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~-------~~~~~i~~~~~sp~g-  186 (315)
                       +....      ........++|+|.++.|+++.......+|.++   ....+..+.       .+-..+.+++++|.. 
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence             22221      123346899999999877777665444455443   112222221       122356889999974 


Q ss_pred             CEEEEeeCCCcEEEEEccCCCCCeeEeccCC----------CceeEEEccCC-eEEEEcCCEEEec
Q psy9936         187 TYMATSAGDSQLRIWDVRNLEGPLNTFRTRT----------PINNLAFSQRG-LLATSRGNIVEFL  241 (315)
Q Consensus       187 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~s~~g-~~~~~~~~~i~~~  241 (315)
                      .+++.+..+..+.++|...  +++..+....          ..-.|+|+++| +|+++..+.+..+
T Consensus       186 ~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f  249 (255)
T 3qqz_A          186 TLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRF  249 (255)
T ss_dssp             EEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEE
T ss_pred             eEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEE
Confidence            4555666677888998764  5555554331          35889999999 5777777765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.89  E-value=1.1e-06  Score=79.43  Aligned_cols=160  Identities=17%  Similarity=0.180  Sum_probs=103.6

Q ss_pred             CeEEEEeCC-CCEEEEeec--CC-----ceE---EEEEc-CCC---ceEEEEcCCCeEEEEEccCCeEEEEeccCC----
Q psy9936          72 DWVYIYDNQ-GIELHCLKV--LN-----KVT---RMEFL-PYH---FLLATASEEGYLSWLDTSIGKIVSDFSAKK----  132 (315)
Q Consensus        72 ~~i~i~~~~-~~~~~~~~~--~~-----~v~---~~~~~-~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----  132 (315)
                      +.|.-+|.. ++.+.....  +.     .+.   -+... .+|   ..++.++.+|.++++|..+|+.+..+....    
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            579999984 555544432  11     111   12222 466   378889999999999999998876654321    


Q ss_pred             --------CC---------------------------------eEEEEEcCCCCEEEEEc--------------------
Q psy9936         133 --------GK---------------------------------LSVMTQNPYNACICLGH--------------------  151 (315)
Q Consensus       133 --------~~---------------------------------v~~~~~~p~~~~l~~~~--------------------  151 (315)
                              +.                                 -..++++|+..++++..                    
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                    00                                 01346677655554432                    


Q ss_pred             -------------CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC
Q psy9936         152 -------------RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP  218 (315)
Q Consensus       152 -------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  218 (315)
                                   .+|.|..||+.+++.+.+.... .++..-.....+.++++++.|+.++.||.+++ +.+..+....+
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g  528 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSG  528 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSC
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCCC
Confidence                         3588999999999988776532 22221112224667888999999999999999 88988887765


Q ss_pred             ce--eEEEccCCe-EEEE
Q psy9936         219 IN--NLAFSQRGL-LATS  233 (315)
Q Consensus       219 v~--~~~~s~~g~-~~~~  233 (315)
                      +.  -+.|..+|+ |++.
T Consensus       529 ~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          529 IVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             CCSCCEEEEETTEEEEEE
T ss_pred             cccCceEEEECCEEEEEE
Confidence            43  477778884 5543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.88  E-value=7.2e-06  Score=70.27  Aligned_cols=213  Identities=5%  Similarity=-0.102  Sum_probs=134.4

Q ss_pred             CCcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEE-e-CCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVA-Q-KDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~-~~~i~i~~~~~~~~~   85 (315)
                      ...+..++|++.+..| ++-...+.|+.+++.+......+. .......+++.+.+..|..+ . .+.|.+.++++....
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            3457789999765544 455567889999988765444443 23356778888754444444 3 578999998765433


Q ss_pred             Eee--cCCceEEEEEcCCCceEEEEc-CC-CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEc
Q psy9936          86 CLK--VLNKVTRMEFLPYHFLLATAS-EE-GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWS  160 (315)
Q Consensus        86 ~~~--~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d  160 (315)
                      .+.  .......+++.|.+..|+.+. .. +.|..+++............-...+.++++|++..|+.+ ...+.|..+|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            332  236678999999766555543 34 689999887433322233334457899999876655554 5567899999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEE
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAF  224 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~  224 (315)
                      +........+.........+++ ..+.++++....+.|..++..++ ..+..+... ..+..+++
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G-~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG-KNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC-CSCEEEECSCSCCCCEEE
T ss_pred             CCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC-cceEEEccCCCCCceEEE
Confidence            8754333233323345678888 44555556666778999987666 555555433 23445544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=6.7e-07  Score=82.27  Aligned_cols=221  Identities=14%  Similarity=0.144  Sum_probs=141.9

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCC-----ceeEEEEeecCcEEEEEe------CCeEEEEeC-CCCEEEEeec
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVME-----EVYDIKWLHLETMFAVAQ------KDWVYIYDN-QGIELHCLKV   89 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------~~~i~i~~~-~~~~~~~~~~   89 (315)
                      +..+++++.++.|..+|..+|+.+..+....     .+.+.-...++.+++...      ++.|+.+|. +++.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            4577788889999999999999887765321     121111112555554433      478999998 4565555432


Q ss_pred             C--C------------------------------ceEEEEEcCCCceEEEEcCCC-------------------eEEEEE
Q psy9936          90 L--N------------------------------KVTRMEFLPYHFLLATASEEG-------------------YLSWLD  118 (315)
Q Consensus        90 ~--~------------------------------~v~~~~~~~~~~~l~~~~~d~-------------------~i~~~d  118 (315)
                      .  .                              ....+++.|+...++.++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            1  0                              012468888888888887766                   399999


Q ss_pred             ccCCeEEEEecc--CC-------CCeEEEEEcCCCC---EEEEEcCCCeEEEEcCCCCcceeEeeccc------------
Q psy9936         119 TSIGKIVSDFSA--KK-------GKLSVMTQNPYNA---CICLGHRNGTVTMWSPTVQKPLASLLCHK------------  174 (315)
Q Consensus       119 ~~~~~~~~~~~~--~~-------~~v~~~~~~p~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------  174 (315)
                      ..+|+.+-.++.  |.       .+.....+..+|+   .++.++.+|.+.++|..+++.+.......            
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            999998877654  22       2222223334665   68889999999999999998874432111            


Q ss_pred             ccE------------------------EEEEECCCCCEEEEe------------------------------------eC
Q psy9936         175 AGI------------------------QSVAVNHTGTYMATS------------------------------------AG  194 (315)
Q Consensus       175 ~~i------------------------~~~~~sp~g~~l~~~------------------------------------~~  194 (315)
                      .++                        ..++++|+...+++.                                    ..
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence            000                        125777776655542                                    12


Q ss_pred             CCcEEEEEccCCCCCeeEeccCCCceeEEEcc-CCe-EEEEcCCEEEecCC
Q psy9936         195 DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQ-RGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       195 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~-~~~~~~~~i~~~~~  243 (315)
                      +|.|..||+.++ +.+.....+.+.....+.. +++ ++++.++.++.++.
T Consensus       437 ~g~l~A~D~~tG-~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          437 SGALLAWDPVKQ-KAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             EEEEEEEETTTT-EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cceEEEEeCCCC-cEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhh
Confidence            378999999998 7777766655554333333 344 55566899987765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.85  E-value=1.5e-05  Score=68.57  Aligned_cols=217  Identities=9%  Similarity=-0.032  Sum_probs=137.7

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCC-----EEEEee-cCCceEE
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGI-----ELHCLK-VLNKVTR   95 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~-----~~~~~~-~~~~v~~   95 (315)
                      +|+.+. ...|+..++..............+..++|.+.+..|..+.  .+.|+.+++++.     ....+. .......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            555443 4679999988776665666667789999998655555553  678999998652     222222 3356788


Q ss_pred             EEEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc--CCCeEEEEcCCCCcceeEeec
Q psy9936          96 MEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH--RNGTVTMWSPTVQKPLASLLC  172 (315)
Q Consensus        96 ~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~  172 (315)
                      +++.+. ++++++-...+.|.+.++........+.........++++|.+..|+...  ..+.|...++........+..
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~  243 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  243 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence            999984 55555666778999999875544444443445588999999766665554  246899998874433322333


Q ss_pred             ccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCeEEEE-cCCEEEecC
Q psy9936         173 HKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLLATS-RGNIVEFLK  242 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~~~~-~~~~i~~~~  242 (315)
                      .-...+.|+++|++..|+.+. ..+.|..+|+... .........   .....+++..+..|.+. ..+.|..++
T Consensus       244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence            335778999999877776664 4568999998764 333333321   13456776554454443 345555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.84  E-value=2.7e-05  Score=64.70  Aligned_cols=200  Identities=9%  Similarity=-0.016  Sum_probs=126.2

Q ss_pred             CcEEEEEEcCCCCEE-EEEcCCCeEEEEEccC----ceEEEEec-CCCceeEEEEeecC-cEEEEEe-CCeEEEEeCCCC
Q psy9936          11 FGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVR----KTLACEMN-VMEEVYDIKWLHLE-TMFAVAQ-KDWVYIYDNQGI   82 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~----~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~-~~~i~i~~~~~~   82 (315)
                      ..+.+++|++++..| ++-...+.|..+++.+    ......+. .......+++.+.+ .++++-. .+.|.+++.++.
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            456789999866555 4555568899999876    22222232 22456788988754 4444433 679999999876


Q ss_pred             EEEEee--cCCceEEEEEcCCCceEEEEcC-C-CeEEEEEccCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEE-cCCCeE
Q psy9936          83 ELHCLK--VLNKVTRMEFLPYHFLLATASE-E-GYLSWLDTSIGKIVSDF-SAKKGKLSVMTQNPYNACICLG-HRNGTV  156 (315)
Q Consensus        83 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~-~~d~~i  156 (315)
                      ....+.  .......++++|.+..|+.+.. . +.|..+++. |.....+ ...-...+.++++|++..|+.+ ...+.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            544433  3367889999997655555443 3 689888886 4333333 2233567899999987766555 456799


Q ss_pred             EEEcCCCCcceeEeec---ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         157 TMWSPTVQKPLASLLC---HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      ..+|+... ....+..   .......+++. .+.++++-...+.|..++..++ ..+..+.
T Consensus       189 ~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g-~~~~~i~  246 (316)
T 1ijq_A          189 SSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG-SDVNLLA  246 (316)
T ss_dssp             EEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC-CCCEEEE
T ss_pred             EEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC-cceEEEe
Confidence            99999743 3333321   12345678884 3555555566778999998776 5555554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.83  E-value=5.2e-06  Score=68.94  Aligned_cols=189  Identities=15%  Similarity=0.221  Sum_probs=128.0

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeec----Cc---EEEEEe----CCeEEEEeC--CCCEEEEee
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHL----ET---MFAVAQ----KDWVYIYDN--QGIELHCLK   88 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~----~~~i~i~~~--~~~~~~~~~   88 (315)
                      ..+++.....+.+.+||+ +|+.+..+.. +.++.+..-|+    |+   +++++.    +++|.+|++  ....+..+.
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            345555556778999999 7787777754 66777777663    22   333332    368999966  444555552


Q ss_pred             c-------C-CceEEEEE--cCC-Cc-eEEEEcCCCeEEEEEcc-------CCeEEEEeccCCCCeEEEEEcCCCCEEEE
Q psy9936          89 V-------L-NKVTRMEF--LPY-HF-LLATASEEGYLSWLDTS-------IGKIVSDFSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        89 ~-------~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      .       . ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++... +.+..+...+....|+.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEE
Confidence            2       1 45666777  775 43 67788889999999883       34667777654 46888899998889999


Q ss_pred             EcCCCeEEEEcCC-----CCcceeEee-cc-cccEEEEEE--CCCCC-EEEEee-CCCcEEEEEcc-CCCCCeeEec
Q psy9936         150 GHRNGTVTMWSPT-----VQKPLASLL-CH-KAGIQSVAV--NHTGT-YMATSA-GDSQLRIWDVR-NLEGPLNTFR  214 (315)
Q Consensus       150 ~~~d~~i~i~d~~-----~~~~~~~~~-~~-~~~i~~~~~--sp~g~-~l~~~~-~d~~i~iwd~~-~~~~~~~~~~  214 (315)
                      +-++..|..||.+     +++.+..+. ++ ...+..|++  .++++ ||++++ .+++..+||.. +. +.+..+.
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~-~~vg~f~  272 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN-KYVADFR  272 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC-CEEEEEE
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC-cEEEEEE
Confidence            9998888888865     233444432 22 246888888  56666 666555 67799999997 44 6666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.80  E-value=2.9e-07  Score=84.69  Aligned_cols=243  Identities=9%  Similarity=-0.019  Sum_probs=140.1

Q ss_pred             EEEEcC-CCCEEEEEcCCC-----------eEEEEEccCceEEE--Eec--CCCceeEEEEeecCcEEEEEe--CCeEEE
Q psy9936          15 RMNYTK-NGRHLLLGGKRG-----------HVAAFDWVRKTLAC--EMN--VMEEVYDIKWLHLETMFAVAQ--KDWVYI   76 (315)
Q Consensus        15 ~~~~s~-~~~~l~~~~~dg-----------~i~v~~~~~~~~~~--~~~--~~~~v~~~~~~~~~~~l~~~~--~~~i~i   76 (315)
                      ++++.| +++.++.|+.+.           .+.+||..+++...  .+.  +.....++++.+++++++.|+  +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888888876532           58899988876432  222  222234567788999998886  458999


Q ss_pred             EeCCCCEEEEeecC---CceEEEEEcCCCceEEEEc-CC-----CeEEEEEccCCeEEEEe-----ccCCCCeEEEEEcC
Q psy9936          77 YDNQGIELHCLKVL---NKVTRMEFLPYHFLLATAS-EE-----GYLSWLDTSIGKIVSDF-----SAKKGKLSVMTQNP  142 (315)
Q Consensus        77 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~p  142 (315)
                      ||........+...   ..-.+++..+++++++.|+ .+     ..+.+||..+.+-...-     ......- ...+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeec
Confidence            99976655554321   2223456667899999988 34     46999999877644320     0000000 012234


Q ss_pred             CCCEEEEEcCC---------CeEEEEcCCCCcceeEeecccc---------cEEEEEEC-CCCCEEEEeeCCC-------
Q psy9936         143 YNACICLGHRN---------GTVTMWSPTVQKPLASLLCHKA---------GIQSVAVN-HTGTYMATSAGDS-------  196 (315)
Q Consensus       143 ~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~s-p~g~~l~~~~~d~-------  196 (315)
                      ++..++.|+.+         ..+..||..+.........+..         .-.++.|. .++++++.|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            55555555444         4578888887654333221111         22344443 3678888887542       


Q ss_pred             ----cEEEEEccCCCCCeeEec---cCC--CceeEEEccCCeEEEEcC-------------CEEEecCC-----------
Q psy9936         197 ----QLRIWDVRNLEGPLNTFR---TRT--PINNLAFSQRGLLATSRG-------------NIVEFLKP-----------  243 (315)
Q Consensus       197 ----~i~iwd~~~~~~~~~~~~---~~~--~v~~~~~s~~g~~~~~~~-------------~~i~~~~~-----------  243 (315)
                          .+.+||..+. . ...+.   .+.  .-.+++..|+|.+++.++             ..+..|+|           
T Consensus       429 ~~~~~v~~yd~~~~-~-W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~  506 (656)
T 1k3i_A          429 TNAHIITLGEPGTS-P-NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  506 (656)
T ss_dssp             CCEEEEECCSTTSC-C-EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             CcceEEEcCCCCCC-C-eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence                5778887764 2 22221   122  134556778885444332             23555555           


Q ss_pred             ------C-ceeecccccccccCCc
Q psy9936         244 ------P-EINFEPRRKANKAGGS  260 (315)
Q Consensus       244 ------~-~~~~~~~~~~~~~~~~  260 (315)
                            . ...+.|+++.++.|+.
T Consensus       507 ~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          507 SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCccccccHhhcCCCcEEEecCCC
Confidence                  1 1234578888888774

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=8.9e-06  Score=76.33  Aligned_cols=226  Identities=11%  Similarity=0.126  Sum_probs=145.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe---c-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM---N-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~   85 (315)
                      ...|.++...++|.+. .|+.++.|..|+..++......   . ....|.++...+++.+.+.+.++-+..++..+....
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE
Confidence            4568999988888654 4555556889997665432211   1 235688888887888877666678999998766655


Q ss_pred             Eeec----CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccC-----CCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936          86 CLKV----LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK-----KGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus        86 ~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      .+..    ...|.++...+++.+.+ |+. +-+..||..+++........     ...|.++...++|.+.+. +.++-+
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl  517 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGV  517 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCE
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCE
Confidence            5542    35788998888876444 444 56899998876543322211     356899999998875554 443447


Q ss_pred             EEEcCCCCcceeEeec----ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC-----CCceeEEEccC
Q psy9936         157 TMWSPTVQKPLASLLC----HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-----TPINNLAFSQR  227 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~----~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~  227 (315)
                      ..||..+++ +..+..    ....|.++...++|.+.+.. .+|.+..||..+. . +..+...     ..|.++..+++
T Consensus       518 ~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~-~-~~~~~~~~gl~~~~i~~i~~d~~  593 (781)
T 3v9f_A          518 GIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF-D-YQVFQRKEGLPNTHIRAISEDKN  593 (781)
T ss_dssp             EEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC-C-CEEECGGGTCSCCCCCEEEECSS
T ss_pred             EEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC-c-EEEccccCCCCCceEEEEEECCC
Confidence            778887654 333321    23578899999999865544 4665488888775 3 3333321     24788999998


Q ss_pred             CeEEEEcCCEEEecCC
Q psy9936         228 GLLATSRGNIVEFLKP  243 (315)
Q Consensus       228 g~~~~~~~~~i~~~~~  243 (315)
                      |.+-++..+-|..++|
T Consensus       594 g~lW~~t~~Gl~~~~~  609 (781)
T 3v9f_A          594 GNIWASTNTGISCYIT  609 (781)
T ss_dssp             SCEEEECSSCEEEEET
T ss_pred             CCEEEEcCCceEEEEC
Confidence            8644444433554444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.78  E-value=2.3e-05  Score=65.21  Aligned_cols=217  Identities=7%  Similarity=-0.057  Sum_probs=133.0

Q ss_pred             EEEEEcCCCeEEEEEccCce--EEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCE---EEEeecCCceEEE
Q psy9936          24 HLLLGGKRGHVAAFDWVRKT--LACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIE---LHCLKVLNKVTRM   96 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~---~~~~~~~~~v~~~   96 (315)
                      +|+.+. ...|+.+++++..  ....+.....+..+.|.+.+..|..+.  .+.|+.+++++..   ............+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            455443 4679999988763  222222234567889998655555443  6789999986542   1222233567789


Q ss_pred             EEcCC-CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc--CCCeEEEEcCCCCcceeEe-ec
Q psy9936          97 EFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH--RNGTVTMWSPTVQKPLASL-LC  172 (315)
Q Consensus        97 ~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~i~d~~~~~~~~~~-~~  172 (315)
                      ++.+. +.++++-...+.|.++++........+.........++++|.+..|+.+.  ..+.|...+++.. ....+ ..
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~  163 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINS  163 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECS
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEEC
Confidence            99975 45555556678999999874433323333445678999999766665554  3578998888743 33333 22


Q ss_pred             ccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEecc-CCCceeEEEccCCeEEEE-cCCEEEecCC
Q psy9936         173 HKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRT-RTPINNLAFSQRGLLATS-RGNIVEFLKP  243 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~-~~~~i~~~~~  243 (315)
                      .-...+.++|+|++..|+.+. ..+.|..+|+... ........ ......+++..++.|.+- ..+.|...++
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence            234678999999776666554 5678999998754 33222221 223567777665555443 3556664443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.78  E-value=3.4e-06  Score=76.27  Aligned_cols=202  Identities=13%  Similarity=0.097  Sum_probs=127.4

Q ss_pred             CCCeEEEEEccCceEEEEecCCCce---------------------------------------eEEEEeecCcEEEEEe
Q psy9936          30 KRGHVAAFDWVRKTLACEMNVMEEV---------------------------------------YDIKWLHLETMFAVAQ   70 (315)
Q Consensus        30 ~dg~i~v~~~~~~~~~~~~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~   70 (315)
                      .+|.|+.+|..+|+.+..+....+.                                       ..+++.+...++..+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3789999999999988776633221                                       1234555555555543


Q ss_pred             -C----------------CeEEEEeCC-CCEEEEeecC-C---------ceEEEEEc-CCC---ceEEEEcCCCeEEEEE
Q psy9936          71 -K----------------DWVYIYDNQ-GIELHCLKVL-N---------KVTRMEFL-PYH---FLLATASEEGYLSWLD  118 (315)
Q Consensus        71 -~----------------~~i~i~~~~-~~~~~~~~~~-~---------~v~~~~~~-~~~---~~l~~~~~d~~i~~~d  118 (315)
                       +                +.|.-+|.+ ++........ .         ...-+... .+|   ..++.++.+|.++++|
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence             3                378889985 4444333321 0         11112222 467   5677889999999999


Q ss_pred             ccCCeEEEEeccCC------------C-Ce--------------------------EEEEEcCCCCEEEEE---------
Q psy9936         119 TSIGKIVSDFSAKK------------G-KL--------------------------SVMTQNPYNACICLG---------  150 (315)
Q Consensus       119 ~~~~~~~~~~~~~~------------~-~v--------------------------~~~~~~p~~~~l~~~---------  150 (315)
                      ..+|+.+.......            + ++                          ..++++|+..++++.         
T Consensus       340 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~  419 (599)
T 1w6s_A          340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE  419 (599)
T ss_dssp             TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred             CCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence            99998876654211            1 01                          235677766655442         


Q ss_pred             ------------------------c------CCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         151 ------------------------H------RNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       151 ------------------------~------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                                              +      ..|.|..||+.+++.+.+... ..+...-.+.-.+.+++.++.|+.++.
T Consensus       420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A  498 (599)
T 1w6s_A          420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKA  498 (599)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEE
Confidence                                    1      347899999999988777652 222221112234667778999999999


Q ss_pred             EEccCCCCCeeEeccCCCc--eeEEEccCCe-EEEE
Q psy9936         201 WDVRNLEGPLNTFRTRTPI--NNLAFSQRGL-LATS  233 (315)
Q Consensus       201 wd~~~~~~~~~~~~~~~~v--~~~~~s~~g~-~~~~  233 (315)
                      ||.+++ +.+..++...++  .-+.+..+|+ |++.
T Consensus       499 ~D~~tG-~~lW~~~l~~g~~~~P~~y~~~G~qyv~~  533 (599)
T 1w6s_A          499 RDSDTG-DLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (599)
T ss_dssp             EETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EECCCC-CEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence            999999 888888766543  4466677884 4443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.75  E-value=1.1e-05  Score=70.63  Aligned_cols=192  Identities=14%  Similarity=0.091  Sum_probs=116.9

Q ss_pred             cEEEEEEcCC-CC-EEEEEcCCCeEEEEEccCceEEEEecCC----CceeEEEE-------eecCcEEEEEeC-C-----
Q psy9936          12 GIYRMNYTKN-GR-HLLLGGKRGHVAAFDWVRKTLACEMNVM----EEVYDIKW-------LHLETMFAVAQK-D-----   72 (315)
Q Consensus        12 ~v~~~~~s~~-~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~----~~v~~~~~-------~~~~~~l~~~~~-~-----   72 (315)
                      ....|+|+|. .. ++++....+.|++.|+.++.+.......    .....++|       ++++..|.++.+ +     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 44 4444444467999999888876655422    25889999       999986666642 2     


Q ss_pred             --eEEEEeCCC--CE-----EEEeecCCceEEEEEcCC-CceEEEEcCCCeEEEEEcc-------CCeE-----------
Q psy9936          73 --WVYIYDNQG--IE-----LHCLKVLNKVTRMEFLPY-HFLLATASEEGYLSWLDTS-------IGKI-----------  124 (315)
Q Consensus        73 --~i~i~~~~~--~~-----~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~-------~~~~-----------  124 (315)
                        .|.+++...  .-     ...+........++++|+ +.++++-..++.|..+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              266775432  11     122333345567889995 5556666678889999997       5543           


Q ss_pred             EEE-ec-cCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEcCC--CCcc--eeEeecc---c------------ccEE-EEE
Q psy9936         125 VSD-FS-AKKGKLSVMTQNPYNACICLG-HRNGTVTMWSPT--VQKP--LASLLCH---K------------AGIQ-SVA  181 (315)
Q Consensus       125 ~~~-~~-~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~~--~~~~--~~~~~~~---~------------~~i~-~~~  181 (315)
                      ... +. ........++|+|+|++|+.+ ...+.|+.++..  ++..  ...+-+.   .            .... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            111 21 123446889999999965444 567789986643  2221  1222221   0            1234 445


Q ss_pred             EC-------CCCCEEEEeeCCCcEEEEEc
Q psy9936         182 VN-------HTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       182 ~s-------p~g~~l~~~~~d~~i~iwd~  203 (315)
                      ..       ++|.++++-.....|+.++.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEeC
Confidence            54       45666666566778888883

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.74  E-value=4e-05  Score=63.75  Aligned_cols=202  Identities=5%  Similarity=-0.075  Sum_probs=126.3

Q ss_pred             cEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceE-EEEec-CCCceeEEEEeecC-cEEEEEe-CCeEEEEeCCCCEEEE
Q psy9936          12 GIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTL-ACEMN-VMEEVYDIKWLHLE-TMFAVAQ-KDWVYIYDNQGIELHC   86 (315)
Q Consensus        12 ~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~-~~~~~-~~~~v~~~~~~~~~-~~l~~~~-~~~i~i~~~~~~~~~~   86 (315)
                      .+.+++|++.+. ++.+-...+.|..+++.+... ...+. .......+++.+.+ .++.+-. .+.|.++++++.....
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            356788988554 445555678899999876532 11121 23456778888754 4444433 6789999997754444


Q ss_pred             e--ecCCceEEEEEcCCCceEEEEc--CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEcC
Q psy9936          87 L--KVLNKVTRMEFLPYHFLLATAS--EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWSP  161 (315)
Q Consensus        87 ~--~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~  161 (315)
                      +  ........+++.|.+..|+.+.  ..+.|..+++............-...+.++++|++..|+.+ ...+.|..+|+
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            3  2346778999999755555554  35789999886332222222233457899999976665554 55789999998


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      +.........+.......+++.. +.++.+-...+.|..++..++ .....+..
T Consensus       196 dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G-~~~~~i~~  247 (318)
T 3sov_A          196 DGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG-EGLREIHS  247 (318)
T ss_dssp             TSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC-CSCEEEEC
T ss_pred             CCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC-CceEEEeC
Confidence            74332222222344567777753 344555556778999998777 55555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.73  E-value=8.4e-05  Score=63.93  Aligned_cols=204  Identities=9%  Similarity=-0.048  Sum_probs=128.1

Q ss_pred             CCcEEEEEEcCCCCEEE-EEcCCCeEEEEEccCc----eEEEEec-CCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRK----TLACEMN-VMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~----~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~   81 (315)
                      -..+..++|++.+..|. +-...+.|+.+++...    .....+. .......+++.+. +.++.+-. .+.|.+.++++
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            35678999998665554 4455678988888652    2222333 3346778898874 44444433 67899999987


Q ss_pred             CEEEEee--cCCceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeE
Q psy9936          82 IELHCLK--VLNKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTV  156 (315)
Q Consensus        82 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i  156 (315)
                      .....+.  .......+++.|.+..|+.+..  .+.|...++........+...-...+.|+++|++..|+.+ ...+.|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I  270 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  270 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence            6554433  3356889999997655555542  4689999987433333333333568999999887766665 456799


Q ss_pred             EEEcCCCCcceeEeec--ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         157 TMWSPTVQKPLASLLC--HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~--~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      ..+|++..........  .-.....+++. .+.++.+-...+.|..+|..++ ..+..+..
T Consensus       271 ~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G-~~~~~i~~  329 (400)
T 3p5b_L          271 SSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG-SDVNLLAE  329 (400)
T ss_dssp             EEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC-CCCEEEEC
T ss_pred             EEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC-CceEEEec
Confidence            9999875433222221  22345677773 3445555566678999997777 55555543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=4e-05  Score=71.91  Aligned_cols=227  Identities=12%  Similarity=0.035  Sum_probs=146.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-------c---CCCceeEEEEeecCcEEEEEeCCeEEEEeC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-------N---VMEEVYDIKWLHLETMFAVAQKDWVYIYDN   79 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-------~---~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~   79 (315)
                      ...|.++...++|.+ ..|+.++-|..++..+.......       .   ....|.++...++|.+.+.+.++-|..|+.
T Consensus       312 ~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~  390 (781)
T 3v9f_A          312 NASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN  390 (781)
T ss_dssp             SSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred             CCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence            467899999988864 45665666888987765433221       1   224588888888888877766677888988


Q ss_pred             CCCEEEEee-----cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcC
Q psy9936          80 QGIELHCLK-----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        80 ~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      .+.....+.     ....|.++...+++.+ .+|+.++-+..+|..+++......  .....|.++...++|.+.+ |+.
T Consensus       391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~  468 (781)
T 3v9f_A          391 GKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH  468 (781)
T ss_dssp             TEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET
T ss_pred             CCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC
Confidence            654433221     1256888888877764 456666679999987765432211  1345689999888887554 444


Q ss_pred             CCeEEEEcCCCCcceeEeecc-----cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-----CCCceeE
Q psy9936         153 NGTVTMWSPTVQKPLASLLCH-----KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-----RTPINNL  222 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~~  222 (315)
                       +.|..||..+++........     ...|.++...++|.+.+. +.++-+..||..+.  .+..+..     ...|.++
T Consensus       469 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i~~i  544 (781)
T 3v9f_A          469 -AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTINQI  544 (781)
T ss_dssp             -TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCC--EEEEECTTTTCSCSCEEEE
T ss_pred             -CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCC--eEEEccCCCCCCCCeeEEE
Confidence             56889998876543322211     357899999999986554 44334777887664  2333322     1247889


Q ss_pred             EEccCCe-EEEEcCCEEEecCC
Q psy9936         223 AFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       223 ~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      ..+++|. ++++.+|.+..+++
T Consensus       545 ~~d~~g~lWi~T~~Glv~~~d~  566 (781)
T 3v9f_A          545 YRSSKGQMWLATGEGLVCFPSA  566 (781)
T ss_dssp             EECTTSCEEEEETTEEEEESCT
T ss_pred             EECCCCCEEEEECCCceEEECC
Confidence            9989885 55666554366665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.69  E-value=1.4e-06  Score=80.04  Aligned_cols=219  Identities=10%  Similarity=0.037  Sum_probs=127.9

Q ss_pred             EEEEcCCCCEEEEEcC-CCeEEEEEccCceEEEEec-CCC-ceeEEEEeecCcEEEEEe--C-----CeEEEEeCCCCEE
Q psy9936          15 RMNYTKNGRHLLLGGK-RGHVAAFDWVRKTLACEMN-VME-EVYDIKWLHLETMFAVAQ--K-----DWVYIYDNQGIEL   84 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~~~~--~-----~~i~i~~~~~~~~   84 (315)
                      ++++.++++.+++|+. +..+.+||..+++....-. ... .-.+++..+++++++.|+  +     ..+.+||......
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            4677789999999884 4589999998887654432 112 223456667898888876  2     4799999977665


Q ss_pred             EEeecC------CceEEEEEcCCCceEEEEcCC---------CeEEEEEccCCeEEEEeccCC---------CCeEEEEE
Q psy9936          85 HCLKVL------NKVTRMEFLPYHFLLATASEE---------GYLSWLDTSIGKIVSDFSAKK---------GKLSVMTQ  140 (315)
Q Consensus        85 ~~~~~~------~~v~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~  140 (315)
                      ..+...      ..-....+..++..++.++.+         ..+..||..+.........+.         ..-.++.|
T Consensus       327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~  406 (656)
T 1k3i_A          327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY  406 (656)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred             eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence            554211      000011122445555555444         356788887765433222111         12244455


Q ss_pred             cC-CCCEEEEEcCCC-----------eEEEEcCCCCcceeEe--eccccc-EEEEEECCCCCEEEEeeCC----------
Q psy9936         141 NP-YNACICLGHRNG-----------TVTMWSPTVQKPLASL--LCHKAG-IQSVAVNHTGTYMATSAGD----------  195 (315)
Q Consensus       141 ~p-~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~~-i~~~~~sp~g~~l~~~~~d----------  195 (315)
                      .. ++++++.|+.++           .+.+||..+.......  ..+... -.++...|+|++++.|+.+          
T Consensus       407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence            43 677888887542           6888998876543322  112222 2345667899999999854          


Q ss_pred             -CcEEEEEccCCCCCeeEec---cCCC-ceeEEEccCCeEEEEcC
Q psy9936         196 -SQLRIWDVRNLEGPLNTFR---TRTP-INNLAFSQRGLLATSRG  235 (315)
Q Consensus       196 -~~i~iwd~~~~~~~~~~~~---~~~~-v~~~~~s~~g~~~~~~~  235 (315)
                       ..+.+||..+. + ...+.   .... .....+.|+|.+++.++
T Consensus       487 ~~~v~~ydp~t~-~-W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          487 VFTPEIYVPEQD-T-FYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             CCCCEEEEGGGT-E-EEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             ccceEEEcCCCC-c-eeecCCCCCccccccHhhcCCCcEEEecCC
Confidence             46899998774 2 22221   1111 23455678996555443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.67  E-value=1.3e-06  Score=81.64  Aligned_cols=153  Identities=12%  Similarity=0.027  Sum_probs=94.3

Q ss_pred             ceeEEEEe-ecCcEEEEEeC--C----eEEEEeCCCC-EEEEeecCCceEEEEEcCCCceEEEEcCC-----CeEEEEEc
Q psy9936          53 EVYDIKWL-HLETMFAVAQK--D----WVYIYDNQGI-ELHCLKVLNKVTRMEFLPYHFLLATASEE-----GYLSWLDT  119 (315)
Q Consensus        53 ~v~~~~~~-~~~~~l~~~~~--~----~i~i~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~  119 (315)
                      .+...+|| |||++|+.+.+  |    .|+++|+.+. +............+.|+|||+.|+....+     ..|+++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            57788999 99999887642  2    4999999765 42110001123468899999877777654     25888888


Q ss_pred             cCCeE--EEEec-cCCCCeEEEEEcCCCCEEEEEc---CCCeEEEEcCCCCc-ce--eEee-cccccEEEEEECCCCCEE
Q psy9936         120 SIGKI--VSDFS-AKKGKLSVMTQNPYNACICLGH---RNGTVTMWSPTVQK-PL--ASLL-CHKAGIQSVAVNHTGTYM  189 (315)
Q Consensus       120 ~~~~~--~~~~~-~~~~~v~~~~~~p~~~~l~~~~---~d~~i~i~d~~~~~-~~--~~~~-~~~~~i~~~~~sp~g~~l  189 (315)
                      .++..  ...+. ........+.|+|||++|+...   ....|.++|+.++. ..  ..+. .......++.|+..+.++
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~  334 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLV  334 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEE
Confidence            76631  22222 2233466789999999887654   34578899998752 22  3332 334455666665444444


Q ss_pred             EEeeCC--C--cEEEEEccC
Q psy9936         190 ATSAGD--S--QLRIWDVRN  205 (315)
Q Consensus       190 ~~~~~d--~--~i~iwd~~~  205 (315)
                      +.+..+  +  .|..+++.+
T Consensus       335 ~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          335 ILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEECTTTCTTCEEEEEETTS
T ss_pred             EEeCCCCCCCcEEEEEcCCC
Confidence            444443  2  466667654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.66  E-value=2.9e-05  Score=70.17  Aligned_cols=221  Identities=10%  Similarity=0.095  Sum_probs=134.1

Q ss_pred             CCEEEEEcCCCeEEEEEccCceEEEEecCCC-----cee-EEEEeec---Cc-EEEEEe-------CCeEEEEeCC-CCE
Q psy9936          22 GRHLLLGGKRGHVAAFDWVRKTLACEMNVME-----EVY-DIKWLHL---ET-MFAVAQ-------KDWVYIYDNQ-GIE   83 (315)
Q Consensus        22 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~v~-~~~~~~~---~~-~l~~~~-------~~~i~i~~~~-~~~   83 (315)
                      +..+++++.++.|.-+|..+|+.+.......     .+. ......+   ++ .++++.       ++.|+-+|.. ++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            4567778889999999999999887765221     111 1112222   22 444443       6789999984 555


Q ss_pred             EEEeecCC-c-----------------------------------------eEEEEEcCCCceEEEEcC-----------
Q psy9936          84 LHCLKVLN-K-----------------------------------------VTRMEFLPYHFLLATASE-----------  110 (315)
Q Consensus        84 ~~~~~~~~-~-----------------------------------------v~~~~~~~~~~~l~~~~~-----------  110 (315)
                      +....... .                                         -..+++.|...+++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            44332210 0                                         013456677667776653           


Q ss_pred             ---------C----CeEEEEEccCCeEEEEecc--CCC-------CeEEEEEc-CCCC---EEEEEcCCCeEEEEcCCCC
Q psy9936         111 ---------E----GYLSWLDTSIGKIVSDFSA--KKG-------KLSVMTQN-PYNA---CICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus       111 ---------d----~~i~~~d~~~~~~~~~~~~--~~~-------~v~~~~~~-p~~~---~l~~~~~d~~i~i~d~~~~  164 (315)
                               |    +.|..+|..+|+.+-.++.  |..       ...-+... .+|+   .++.++.+|.+.++|.+++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    5899999999998877653  321       11112222 4674   7888999999999999999


Q ss_pred             cceeEeeccc-------------ccE--------------------------------EEEEECCCCCEEEEee------
Q psy9936         165 KPLASLLCHK-------------AGI--------------------------------QSVAVNHTGTYMATSA------  193 (315)
Q Consensus       165 ~~~~~~~~~~-------------~~i--------------------------------~~~~~sp~g~~l~~~~------  193 (315)
                      +.+..+....             .++                                ..++++|+..++++..      
T Consensus       357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~  436 (582)
T 1flg_A          357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED  436 (582)
T ss_dssp             CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred             CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence            8876654321             000                                1345666654444432      


Q ss_pred             ---------------------------CCCcEEEEEccCCCCCeeEeccCCCcee-EEEccCCe-EEEEcCCEEEecCC
Q psy9936         194 ---------------------------GDSQLRIWDVRNLEGPLNTFRTRTPINN-LAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       194 ---------------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                                                 .+|.|.-||+.++ +.+.......++.. .....+|+ ++++.|+.++.++.
T Consensus       437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-KVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-CEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             eecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-CEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence                                       2578999999998 77766665544332 22223554 55667888886654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.66  E-value=0.00012  Score=61.21  Aligned_cols=221  Identities=10%  Similarity=0.093  Sum_probs=126.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE--ec---CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE--MN---VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIEL   84 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~--~~---~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~   84 (315)
                      ...+.++.|.+++..++++ ..|.| +...+.++.=..  ..   ....+.++.|.+ +..++++..+.|+.-.-.+...
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW  111 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSW  111 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEESSTTSSC
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEECCCCCCc
Confidence            5678999998888777755 46655 333344432111  11   134688898876 6666777777665532223333


Q ss_pred             EEee----cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936          85 HCLK----VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS-DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus        85 ~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                      ....    ....+..+.+.+++..++++. ++.|.. ..+.|+.-. ........+..+.+.|++.+++++...+..+-.
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~  189 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW  189 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE
T ss_pred             eECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe
Confidence            3322    124567788777776666554 554422 222233222 223345578899999999888777655545555


Q ss_pred             cC--CCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec-----cCCCceeEEEccCCe-EE
Q psy9936         160 SP--TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR-----TRTPINNLAFSQRGL-LA  231 (315)
Q Consensus       160 d~--~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~g~-~~  231 (315)
                      |-  .+.+.+.  ......+..+.+.|++.+++ ++.+|.+++.+...+ .....+.     ....+..+.+.+++. ++
T Consensus       190 d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (327)
T 2xbg_A          190 EPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWL  265 (327)
T ss_dssp             CTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred             CCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence            53  2233321  23456788999999987664 456777777642212 2111111     122478888988774 55


Q ss_pred             EEcCCEEE
Q psy9936         232 TSRGNIVE  239 (315)
Q Consensus       232 ~~~~~~i~  239 (315)
                      ++.++.+.
T Consensus       266 ~g~~g~i~  273 (327)
T 2xbg_A          266 AGGAGALL  273 (327)
T ss_dssp             EESTTCEE
T ss_pred             EeCCCeEE
Confidence            55666554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.63  E-value=0.00014  Score=60.72  Aligned_cols=222  Identities=10%  Similarity=0.081  Sum_probs=129.5

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec----CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN----VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHC   86 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~   86 (315)
                      ..+.++.|++ +..+++ +..+.|.. ..+.++.-....    ....+..+.+.+++.+++++.++.|+.-.-.+.....
T Consensus        80 ~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~  156 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQA  156 (327)
T ss_dssp             CEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEE
T ss_pred             ccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEE
Confidence            3678899986 444444 45564443 334343222221    2345778888888888887777765433222333333


Q ss_pred             ee--cCCceEEEEEcCCCceEEEEcCCCeEEE-EEc--cCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          87 LK--VLNKVTRMEFLPYHFLLATASEEGYLSW-LDT--SIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        87 ~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~-~d~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      ..  ....+..+.+.|++.+++++.. |.+.. .|-  .+-+.+.  ......+..+.+.|++.+++. +.+|.+.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~  232 (327)
T 2xbg_A          157 LVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDP  232 (327)
T ss_dssp             EECSCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEET
T ss_pred             eecCCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecC
Confidence            32  3357889999998887776654 44433 332  2223332  234456888999999876654 45788777643


Q ss_pred             CCCcceeEee-c---ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc----CCCceeEEEccCCe-EEE
Q psy9936         162 TVQKPLASLL-C---HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT----RTPINNLAFSQRGL-LAT  232 (315)
Q Consensus       162 ~~~~~~~~~~-~---~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~g~-~~~  232 (315)
                      +.++.-..+. .   +...+..+.+.|++.+++++. ++.+ ++....+ ..-..+..    +..+.++.|.+++. +++
T Consensus       233 D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~  309 (327)
T 2xbg_A          233 DNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPDQGFIL  309 (327)
T ss_dssp             TEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred             CCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence            3232211121 1   223588999999888776654 6666 4444444 44444432    34578899987775 566


Q ss_pred             EcCCEEEecC
Q psy9936         233 SRGNIVEFLK  242 (315)
Q Consensus       233 ~~~~~i~~~~  242 (315)
                      +.+|.|..++
T Consensus       310 G~~G~i~~~~  319 (327)
T 2xbg_A          310 GQKGILLRYV  319 (327)
T ss_dssp             CSTTEEEEEC
T ss_pred             cCCceEEEEc
Confidence            6678877655

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.61  E-value=4.3e-05  Score=64.56  Aligned_cols=217  Identities=14%  Similarity=0.150  Sum_probs=120.3

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEE--EEec----CCCceeEEEEeec----CcEEEEEe-C-----CeE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA--CEMN----VMEEVYDIKWLHL----ETMFAVAQ-K-----DWV   74 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~----~~~~v~~~~~~~~----~~~l~~~~-~-----~~i   74 (315)
                      ..+..++|.|+|+++++ ...|.|++++  +++..  ..+.    .......++|+|+    +.++++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45789999999986665 4568999998  34422  2221    2346889999998    44444433 2     678


Q ss_pred             EEEeCCCCEE----EE---eec----CCceEEEEEcCCCceEEEEcC-------------CCeEEEEEccCC--------
Q psy9936          75 YIYDNQGIEL----HC---LKV----LNKVTRMEFLPYHFLLATASE-------------EGYLSWLDTSIG--------  122 (315)
Q Consensus        75 ~i~~~~~~~~----~~---~~~----~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~--------  122 (315)
                      ..++..+..+    ..   +..    ......++|.|+|.++++.+.             .|.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            8887754211    11   221    123468999999976655432             245666665420        


Q ss_pred             ----eEEEEe-ccCCCCeEEEEEcC-CCCEEEEEcCCCe--------EEEEcCCC----------------CcceeEeec
Q psy9936         123 ----KIVSDF-SAKKGKLSVMTQNP-YNACICLGHRNGT--------VTMWSPTV----------------QKPLASLLC  172 (315)
Q Consensus       123 ----~~~~~~-~~~~~~v~~~~~~p-~~~~l~~~~~d~~--------i~i~d~~~----------------~~~~~~~~~  172 (315)
                          .....+ .++. ....++|+| +|.++++-.....        |.+...-.                ..++..+. 
T Consensus       188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-  265 (352)
T 2ism_A          188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-  265 (352)
T ss_dssp             TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence                000111 1222 256789999 6665554332222        44432211                01233332 


Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCC-----eeEe-ccCCCceeEEEccCCe-EEEE
Q psy9936         173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP-----LNTF-RTRTPINNLAFSQRGL-LATS  233 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~-----~~~~-~~~~~v~~~~~s~~g~-~~~~  233 (315)
                      +......++| .+|.++++.-..+.|...++......     ...+ .....+..+++.|||. +++.
T Consensus       266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence            2334567888 56776666656677888877654111     1122 2223588999999994 4544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.58  E-value=3.9e-05  Score=63.18  Aligned_cols=201  Identities=10%  Similarity=0.080  Sum_probs=127.9

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEc-CCCeEEEEEccCceEEEE-ecCC-------CceeEEEE---eecCcEEEEEe
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGG-KRGHVAAFDWVRKTLACE-MNVM-------EEVYDIKW---LHLETMFAVAQ   70 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~~-~~~~-------~~v~~~~~---~~~~~~l~~~~   70 (315)
                      .+++.. ..-..+++|++....+..++ ..++|..|+...+..... +...       ..+..+.|   .|+++++++..
T Consensus         5 ~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A            5 QIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             EEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             eEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            345555 55567889988555555554 789999999876644333 2221       13578999   58888888644


Q ss_pred             --------------CCeEEEEeCC----CCEEEEeec--------------CCceEEEEEcCCCceEEEEcCC-CeEEEE
Q psy9936          71 --------------KDWVYIYDNQ----GIELHCLKV--------------LNKVTRMEFLPYHFLLATASEE-GYLSWL  117 (315)
Q Consensus        71 --------------~~~i~i~~~~----~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~d-~~i~~~  117 (315)
                                    +..|..||+.    ++.+....-              ......++..++|+..++++.. +.|..+
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV  164 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence                          4679999987    544443321              1247899999999999988888 888888


Q ss_pred             EccCCeEEEEecc------CCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc--eeEee--cc---cccEEEE-EEC
Q psy9936         118 DTSIGKIVSDFSA------KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP--LASLL--CH---KAGIQSV-AVN  183 (315)
Q Consensus       118 d~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~--~~---~~~i~~~-~~s  183 (315)
                      +.. |+.+..+..      .....+.|+++|+|+.|++....+.+..+|+++...  +. ..  +.   -.....+ ..-
T Consensus       165 ~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~  242 (334)
T 2p9w_A          165 SAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVP  242 (334)
T ss_dssp             CTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEE
T ss_pred             eCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccc
Confidence            866 333332211      112367899999999888887799999999884322  11 11  21   1123343 333


Q ss_pred             CCCCE-EEEeeCCCcEEEEEccCC
Q psy9936         184 HTGTY-MATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       184 p~g~~-l~~~~~d~~i~iwd~~~~  206 (315)
                      .+|+. |++.+..+.+.+.+....
T Consensus       243 ~~G~vllV~~~~~~~~~l~S~DgW  266 (334)
T 2p9w_A          243 VGNESVLVGARAPYAISFRSWDNW  266 (334)
T ss_dssp             ETTEEEEEEEETTEEEEEECSSTT
T ss_pred             cCCEEEEEEcCCCCEEEEECCCCc
Confidence            46776 455555666656555443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.57  E-value=0.00016  Score=67.37  Aligned_cols=207  Identities=10%  Similarity=-0.017  Sum_probs=129.4

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCC-----EEEEee-cCCceEE
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGI-----ELHCLK-VLNKVTR   95 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~-----~~~~~~-~~~~v~~   95 (315)
                      +|+.+ ....|+..++..............+..++|.+.+..|..+.  .+.|+.+++.+.     ....+. .......
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            44444 34568888887766655555566788999998655554443  578999998653     122232 3356778


Q ss_pred             EEEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC--CCeEEEEcCCCCcceeEeec
Q psy9936          96 MEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR--NGTVTMWSPTVQKPLASLLC  172 (315)
Q Consensus        96 ~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~  172 (315)
                      |++.+.+. ++++-...+.|.+.++........+.........|+++|.+..|+....  .+.|...++........+..
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~  555 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  555 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence            99998764 5555566789999998754433333334456889999997666655542  36899999874433223333


Q ss_pred             ccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCeEEE
Q psy9936         173 HKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGLLAT  232 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~  232 (315)
                      .-...+.|++++.+..|+.+. ..+.|..+++... .....+....   ....|++..+.+|.+
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~~~lYwt  618 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWT  618 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEE
T ss_pred             CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeCCEEEEE
Confidence            335788999998777666654 4567999998764 3333333221   245566654434444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.54  E-value=0.00053  Score=64.00  Aligned_cols=202  Identities=9%  Similarity=-0.065  Sum_probs=125.8

Q ss_pred             CCcEEEEEEcCCCCE-EEEEcCCCeEEEEEccCc----eEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRH-LLLGGKRGHVAAFDWVRK----TLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~-l~~~~~dg~i~v~~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~   81 (315)
                      ...+..++|++.... +++-...+.|+.+++...    .....+. .......|++.+.+..|..+.  .+.|.+.++++
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            345678999885554 445555678888888653    2223333 334567889888765555554  67999999987


Q ss_pred             CEEEEee--cCCceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeE
Q psy9936          82 IELHCLK--VLNKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTV  156 (315)
Q Consensus        82 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i  156 (315)
                      .....+.  .......|++.|.+..|+.+..  .+.|...++........+...-.....|++++.+..|+.+ ...+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            6655543  3366899999998655555542  3689999987444333333334568999999877666655 456789


Q ss_pred             EEEcCCCCcceeEeecc--cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEe
Q psy9936         157 TMWSPTVQKPLASLLCH--KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF  213 (315)
Q Consensus       157 ~i~d~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~  213 (315)
                      ..+++........+...  -.....|++.. +.++++-...+.|...|..++ ..+..+
T Consensus       583 ~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG-~~~~~l  639 (791)
T 3m0c_C          583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG-SDVNLL  639 (791)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC-CCCEEE
T ss_pred             EEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC-cceEEe
Confidence            99998754333333221  22345666633 334444445677888887776 444444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.43  E-value=0.00073  Score=61.53  Aligned_cols=192  Identities=6%  Similarity=-0.058  Sum_probs=125.6

Q ss_pred             cEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEe
Q psy9936          12 GIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~   87 (315)
                      .+..++|++.+..|. +-..++.|+.++++.......+. .......+++.+.+..|..+.  .+.|.+.++++.....+
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l  117 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL  117 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence            567999998666554 55567889999987654444443 224577888887655444443  57899999976543333


Q ss_pred             --ecCCceEEEEEcCCCceEEEEc--CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEcCC
Q psy9936          88 --KVLNKVTRMEFLPYHFLLATAS--EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWSPT  162 (315)
Q Consensus        88 --~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~~  162 (315)
                        ........+++.|....|+.+.  ..+.|...++..... ..+...-.....+++++++..|+.+ ...+.|..+|+.
T Consensus       118 ~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          118 VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence              3346789999999655555554  356788888864433 2322344568899999987766555 456799999997


Q ss_pred             CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      .... ..+.........+++.. +.++++-...+.|...|..++
T Consensus       197 G~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          197 GLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             SCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            5433 33433334556788765 444445455778888887666

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.40  E-value=0.0006  Score=57.53  Aligned_cols=218  Identities=12%  Similarity=0.090  Sum_probs=124.2

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-EEEEec----CCCceeEEEEeec----CcEEEEEe----C----Ce
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-LACEMN----VMEEVYDIKWLHL----ETMFAVAQ----K----DW   73 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-~~~~~~----~~~~v~~~~~~~~----~~~l~~~~----~----~~   73 (315)
                      ..+..++|.|+|+++++ ..+|.|++++ .+++ .+..+.    .......++++|+    +.++++-.    +    +.
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            46789999999985555 5568999997 3454 222221    2346889999997    55554433    2    56


Q ss_pred             EEEEeCCCC------EEEE---eec--CCceEEEEEcCCCceEEEEcC-------------CCeEEEEEccCCe------
Q psy9936          74 VYIYDNQGI------ELHC---LKV--LNKVTRMEFLPYHFLLATASE-------------EGYLSWLDTSIGK------  123 (315)
Q Consensus        74 i~i~~~~~~------~~~~---~~~--~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~------  123 (315)
                      |..|+.++.      ....   +..  ......++|.|+|.++++.+.             .|.|.-++.. ++      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence            777776543      1111   221  123467999999986666432             2456666654 22      


Q ss_pred             ----EEEEeccCCCCeEEEEEcC-CCCEEEEEcCCC---eEEEEcCCC----------------CcceeEeecccccEEE
Q psy9936         124 ----IVSDFSAKKGKLSVMTQNP-YNACICLGHRNG---TVTMWSPTV----------------QKPLASLLCHKAGIQS  179 (315)
Q Consensus       124 ----~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~---~i~i~d~~~----------------~~~~~~~~~~~~~i~~  179 (315)
                          .+.. .++.. ...++|+| +|+++++-....   .|.+...-.                ..++..+......+..
T Consensus       186 f~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          186 FPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             STTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence                1111 22332 46799999 676555432221   244332111                0133333112345678


Q ss_pred             EEEC-------CCCCEEEEeeCCCcEEEEEccCCCCCe--eEecc--CCCceeEEEccCCe-EEEE
Q psy9936         180 VAVN-------HTGTYMATSAGDSQLRIWDVRNLEGPL--NTFRT--RTPINNLAFSQRGL-LATS  233 (315)
Q Consensus       180 ~~~s-------p~g~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~--~~~v~~~~~s~~g~-~~~~  233 (315)
                      ++|.       .+|.++++.-..+.|...++.......  ..+..  ...+.++++.|||. +++.
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            8884       567777766667788888887531222  22322  23588999999994 5554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=3.3e-05  Score=67.15  Aligned_cols=151  Identities=9%  Similarity=0.026  Sum_probs=97.6

Q ss_pred             ceeEEEEee-c-CcEEEEEeCCeEEEEeCCCCEEEEee-cCCceEEEEEcCCCceEEEEcC-CC----eEEEEEccCCeE
Q psy9936          53 EVYDIKWLH-L-ETMFAVAQKDWVYIYDNQGIELHCLK-VLNKVTRMEFLPYHFLLATASE-EG----YLSWLDTSIGKI  124 (315)
Q Consensus        53 ~v~~~~~~~-~-~~~l~~~~~~~i~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~~~  124 (315)
                      ....++++| + +.++++...+.|+.+|+++..+..+. .......++|+++++.|+++.. ++    .+.+++.. +..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            356789997 3 44444444578999999877665543 3466889999999996666654 22    34445543 321


Q ss_pred             E--EEeccCCCCeEEEEEcC-CCCEEEEEcCCCeEEEEcCCCCcceeEee-cccccEEEEEECCCCCEEEEe-eCCCcEE
Q psy9936         125 V--SDFSAKKGKLSVMTQNP-YNACICLGHRNGTVTMWSPTVQKPLASLL-CHKAGIQSVAVNHTGTYMATS-AGDSQLR  199 (315)
Q Consensus       125 ~--~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~-~~d~~i~  199 (315)
                      .  ..+.. ......++++| +|.++++-..++.|..++..++....... +.......++|+|+|++|+.+ ...+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1  22221 22356788999 67777676678899999998664322222 122457899999999965555 4567899


Q ss_pred             EEEccC
Q psy9936         200 IWDVRN  205 (315)
Q Consensus       200 iwd~~~  205 (315)
                      .++...
T Consensus       296 ~~~~d~  301 (430)
T 3tc9_A          296 RSDYDW  301 (430)
T ss_dssp             EEEEET
T ss_pred             EEeCCc
Confidence            988763

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.40  E-value=3.1e-06  Score=78.13  Aligned_cols=211  Identities=10%  Similarity=-0.013  Sum_probs=125.8

Q ss_pred             CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC----CEEEE-ee-cCCceEEEEEcCC
Q psy9936          30 KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG----IELHC-LK-VLNKVTRMEFLPY  101 (315)
Q Consensus        30 ~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~----~~~~~-~~-~~~~v~~~~~~~~  101 (315)
                      ..+.|++.++.+.+....+.....+..++|.+.+..|..+.  .+.|+.+++.+    ..... +. .......+++.+.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            34578888888776655555455678899998766666654  57899998865    22111 11 1234567888865


Q ss_pred             -CceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC--CCeEEEEcCCCCcceeEe-ecccccE
Q psy9936         102 -HFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR--NGTVTMWSPTVQKPLASL-LCHKAGI  177 (315)
Q Consensus       102 -~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--d~~i~i~d~~~~~~~~~~-~~~~~~i  177 (315)
                       ++++++-...+.|.++++........+.........++++|.+.+|+.+..  .+.|..+++.... ...+ ...-...
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence             445555556788999998755443333333345678899997665555443  2678888876432 2222 2223456


Q ss_pred             EEEEECCCCCEEEE-eeCCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCeEEEE-cCCEEEecC
Q psy9936         178 QSVAVNHTGTYMAT-SAGDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLLATS-RGNIVEFLK  242 (315)
Q Consensus       178 ~~~~~sp~g~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~~~~-~~~~i~~~~  242 (315)
                      +.|+|+|++..|+. -+..+.|..+++... .....+...   .....|++..+.+|.+. ..+.|..++
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  611 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEE
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEE
Confidence            78999998655544 455678999998754 332222211   12456677666555444 345666544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=0.00012  Score=63.68  Aligned_cols=150  Identities=9%  Similarity=0.078  Sum_probs=93.9

Q ss_pred             eeEEEEeec---CcEEEEEeCCeEEEEeCCCCEEEEee-cCCceEEEEEcCCCceEEEEcCC---C-eEEEEEccCCeE-
Q psy9936          54 VYDIKWLHL---ETMFAVAQKDWVYIYDNQGIELHCLK-VLNKVTRMEFLPYHFLLATASEE---G-YLSWLDTSIGKI-  124 (315)
Q Consensus        54 v~~~~~~~~---~~~l~~~~~~~i~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---~-~i~~~d~~~~~~-  124 (315)
                      ...++|.|+   +.++++-..+.|+.++..+..+..+. .......++++++|+++++....   . .+..++...+.. 
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence            568899984   55555544588999999665555543 34668999999999944443321   1 244444332211 


Q ss_pred             EEEeccCCCCeEEEEEcC-CCCEEEEEcCCCeEEEEcCCCCcceeEee--cccccEEEEEECCCCCEEEEe-eCCCcEEE
Q psy9936         125 VSDFSAKKGKLSVMTQNP-YNACICLGHRNGTVTMWSPTVQKPLASLL--CHKAGIQSVAVNHTGTYMATS-AGDSQLRI  200 (315)
Q Consensus       125 ~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~~-~~d~~i~i  200 (315)
                      ...+. .......++++| +|.++++-..++.|+.+|..++.....+.  +.......++|+|+|++|+.+ ...+.|+.
T Consensus       221 ~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          221 RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence            01111 123456688999 67666666677899999998776523332  112233579999999965555 45678999


Q ss_pred             EEcc
Q psy9936         201 WDVR  204 (315)
Q Consensus       201 wd~~  204 (315)
                      ++..
T Consensus       300 ~~~d  303 (433)
T 4hw6_A          300 VDYN  303 (433)
T ss_dssp             EEBC
T ss_pred             EeCC
Confidence            8865

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.36  E-value=6.3e-05  Score=61.94  Aligned_cols=152  Identities=9%  Similarity=0.085  Sum_probs=105.3

Q ss_pred             eeEEEEeec-CcEEEEEe-CCeEEEEeCCCCEEEEeecC---------CceEEEEE---cCCCceEEEEc----------
Q psy9936          54 VYDIKWLHL-ETMFAVAQ-KDWVYIYDNQGIELHCLKVL---------NKVTRMEF---LPYHFLLATAS----------  109 (315)
Q Consensus        54 v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~~~~~~~~~~---------~~v~~~~~---~~~~~~l~~~~----------  109 (315)
                      .-++.|.+. +.++++.. .+.|..|+..+.....+...         ..+..+.|   .|++.++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            356788875 44444442 89999999975433332111         13578999   68887777543          


Q ss_pred             ---CCCeEEEEEcc---CCeEEEEecc-------------CCCCeEEEEEcCCCCEEEEEcCC-CeEEEEcCCCCcceeE
Q psy9936         110 ---EEGYLSWLDTS---IGKIVSDFSA-------------KKGKLSVMTQNPYNACICLGHRN-GTVTMWSPTVQKPLAS  169 (315)
Q Consensus       110 ---~d~~i~~~d~~---~~~~~~~~~~-------------~~~~v~~~~~~p~~~~l~~~~~d-~~i~i~d~~~~~~~~~  169 (315)
                         .+..+..||+.   +++.+.....             -...+..++..++|+..++++.. +.|..++.... .+..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence               25779999999   7776654431             11247899999999999988888 88888887643 3333


Q ss_pred             eec------ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         170 LLC------HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       170 ~~~------~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +..      .....+.|+++|+|..|++....+.+..+|+...
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            321      1123679999999998888877999999998854

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.32  E-value=0.0018  Score=58.95  Aligned_cols=215  Identities=7%  Similarity=-0.026  Sum_probs=136.5

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEeec--CCceEEE
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCLKV--LNKVTRM   96 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~--~~~v~~~   96 (315)
                      .+|+.+ ..+.|+..++++......+.  ....+..++|.+.+..|..+.  ++.|+.+++++.....+-.  ...+..+
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            355554 45679999998765444433  334688999999765555554  6899999987654433322  2457789


Q ss_pred             EEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc--CCCeEEEEcCCCCcceeEeecc
Q psy9936          97 EFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH--RNGTVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus        97 ~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~  173 (315)
                      ++.+.+. ++++-...+.|.+.++........+...-.....++++|....|+...  ..+.|...++.... ...+-..
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~  164 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPN  164 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECS
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECC
Confidence            9987654 455556678899999875433222323345578999999655555554  35688888887443 3333334


Q ss_pred             cccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEeccC-CCceeEEEccCCeEEEEc-CCEEEec
Q psy9936         174 KAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRGLLATSR-GNIVEFL  241 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~~-~~~i~~~  241 (315)
                      -...+.|++++++..|+.+. ..+.|..+|+... .. ..+... .....+++..+..|.+-. .+.|...
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~-~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL-NR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERA  233 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCCCC-ce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEE
Confidence            45778999999877666654 5668999998765 33 333222 235677776654555543 5556543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.32  E-value=0.00059  Score=62.05  Aligned_cols=195  Identities=4%  Similarity=-0.118  Sum_probs=118.7

Q ss_pred             CcEEEEEEcCCCCEEEEE-cCCCeEEEEEccCceE-EEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLG-GKRGHVAAFDWVRKTL-ACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELH   85 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~   85 (315)
                      ..+..++|++.+..|+.+ ...+.|..++++.... ...+. .......+++.+.+..|..+.  .+.|.+.++++....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            457799999866665544 4567898888876532 22233 235688999998655555543  679999999876544


Q ss_pred             Eee--cCCceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEc
Q psy9936          86 CLK--VLNKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWS  160 (315)
Q Consensus        86 ~~~--~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d  160 (315)
                      .+.  .......+++.|.+..|+.+..  .+.|...++............-...+.+++++++..|+.+ ...+.|..+|
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~  199 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  199 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence            432  3466789999997555555543  4678777876332222232334568899999976655555 4567899999


Q ss_pred             CCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       161 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      +..........+.......+++..+ ..+++-...+.|...|..++
T Consensus       200 ~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          200 LDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             SSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred             CCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence            8754322222211222346677655 44444456678988888776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.29  E-value=3.4e-06  Score=77.86  Aligned_cols=212  Identities=8%  Similarity=-0.016  Sum_probs=123.1

Q ss_pred             CcEEEEEEcCCCCEEEEE-cCCCeEEEEEccC----ceEEEEec-CCCceeEEEEeec-CcEEEEE-eCCeEEEEeCCCC
Q psy9936          11 FGIYRMNYTKNGRHLLLG-GKRGHVAAFDWVR----KTLACEMN-VMEEVYDIKWLHL-ETMFAVA-QKDWVYIYDNQGI   82 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~-~~~~i~i~~~~~~   82 (315)
                      ..+..++|++.+..|+.+ ...+.|+.+++.+    ......+. .......+++.+. +.++++- ..+.|.++++++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            345688999876666554 3457899998875    22222221 1223556777754 4444433 3678999999876


Q ss_pred             EEEEeec--CCceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcCCCeEE
Q psy9936          83 ELHCLKV--LNKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHRNGTVT  157 (315)
Q Consensus        83 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~  157 (315)
                      ....+..  ......++++|.+..|+.+..  .+.|..+++........+...-...+.|+|+|++..|+ +-...+.|.
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            5554432  355678999997655555443  26788888763322222222234467899999766554 445677999


Q ss_pred             EEcCCCCcceeEeec---ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEc
Q psy9936         158 MWSPTVQKPLASLLC---HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFS  225 (315)
Q Consensus       158 i~d~~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s  225 (315)
                      .+|+.... ...+..   .......|++..+ .++++....+.|..++..++ ..+..+.... .+..|++.
T Consensus       566 ~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G-~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          566 SIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG-SDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             EECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE-EEEECCCTTCSSCCCCCBC
T ss_pred             EEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC-CceEEeecCCCCCcEEEEe
Confidence            99997433 333321   1123345566443 44555556678999998776 5555554322 24444443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.27  E-value=0.00053  Score=62.38  Aligned_cols=207  Identities=8%  Similarity=-0.042  Sum_probs=120.4

Q ss_pred             EEEEEcCCCeEEEEEccCce--EEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCE--EEEee-cCCceEEE
Q psy9936          24 HLLLGGKRGHVAAFDWVRKT--LACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIE--LHCLK-VLNKVTRM   96 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~--~~~~~-~~~~v~~~   96 (315)
                      +|+-+ ....|+..++....  ..........+..++|.+.+..|..+.  .+.|..+++++..  ...+. .......+
T Consensus        11 ~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl   89 (619)
T 3s94_A           11 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   89 (619)
T ss_dssp             CEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred             eEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence            44443 45679999987653  222333445678999999766666554  5789999987652  22222 22678899


Q ss_pred             EEcCCCc-eEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC--CCeEEEEcCCCCcceeEeecc
Q psy9936          97 EFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR--NGTVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus        97 ~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~  173 (315)
                      ++.+.+. ++++-...+.|.+.++........+...-.....+++.|.+..|+....  .+.|...+++...........
T Consensus        90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~  169 (619)
T 3s94_A           90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  169 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence            9999654 5555566789999998754332223233345678999997665555542  467777777643322222223


Q ss_pred             cccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeEec-cCCCceeEEEccCCeEEE
Q psy9936         174 KAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNTFR-TRTPINNLAFSQRGLLAT  232 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~  232 (315)
                      -...+.++++|++..|+.+. ..+.|..+|+... ....... .-.....+++..+..|.+
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gi~~~~~~ly~t  229 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFEDILYWT  229 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-EEC---------CCCEEESSSEEEEE
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-ccEEEEeCCCCCceEEEEeCCEEEEe
Confidence            45678999999866666554 4567888888754 2222222 111245667766644444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.25  E-value=0.00033  Score=58.22  Aligned_cols=171  Identities=11%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             eCCeEEEEeCCCCEEEEeecCCceEEEEEcCC----Cc---eEE-EEcC--CCeEEEEEcc--CCeEEEEecc------C
Q psy9936          70 QKDWVYIYDNQGIELHCLKVLNKVTRMEFLPY----HF---LLA-TASE--EGYLSWLDTS--IGKIVSDFSA------K  131 (315)
Q Consensus        70 ~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~-~~~~--d~~i~~~d~~--~~~~~~~~~~------~  131 (315)
                      ..+-+.+||++++.+..+.. +.++.+..-|+    |+   +++ +.-.  +++|.+|++.  ++. +..+..      .
T Consensus        48 k~~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t  125 (355)
T 3amr_A           48 KKSGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIAT  125 (355)
T ss_dssp             TTTEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEEC
T ss_pred             CCCCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCC
Confidence            36789999999998887754 56676666653    22   223 3333  5789999773  333 444421      1


Q ss_pred             C-CCeEEEEE--cCC-CC-EEEEEcCCCeEEEEcCC-------CCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEE
Q psy9936         132 K-GKLSVMTQ--NPY-NA-CICLGHRNGTVTMWSPT-------VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLR  199 (315)
Q Consensus       132 ~-~~v~~~~~--~p~-~~-~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~  199 (315)
                      . ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++. ..+.+..+...+....|+.+-++..|.
T Consensus       126 ~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw  204 (355)
T 3amr_A          126 AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLYIAEEDEAIW  204 (355)
T ss_dssp             CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEEEecccceEE
Confidence            1 45667777  774 44 67788889999999873       235567776 346788888999888999999987676


Q ss_pred             EEEccCC----CCCeeEeccC---CCceeEEEc--cCC--eEEEEc--CCEEEecCC
Q psy9936         200 IWDVRNL----EGPLNTFRTR---TPINNLAFS--QRG--LLATSR--GNIVEFLKP  243 (315)
Q Consensus       200 iwd~~~~----~~~~~~~~~~---~~v~~~~~s--~~g--~~~~~~--~~~i~~~~~  243 (315)
                      .++.+..    ...+..+...   ..+..|++.  ++|  ++++++  +++..+++.
T Consensus       205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            6665421    0334333322   247777774  443  455554  667766644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.20  E-value=0.0021  Score=54.79  Aligned_cols=222  Identities=11%  Similarity=0.133  Sum_probs=147.3

Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC--CEEEEeecC--
Q psy9936          15 RMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG--IELHCLKVL--   90 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~--~~~~~~~~~--   90 (315)
                      +.-.+|..+.||.-. ..++.|+|+++.+.+..+...+.|.-=.|..+ +.|+...+..|+-|++++  .+...+..+  
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEEECSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEEEcCCeeEEecccCCCCchhheecchh
Confidence            345788888887664 67899999999999998887778877777654 567777889999999954  444555433  


Q ss_pred             ---CceEEEEEcCCCceEEEEc-------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEcC---CC
Q psy9936          91 ---NKVTRMEFLPYHFLLATAS-------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN---ACICLGHR---NG  154 (315)
Q Consensus        91 ---~~v~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~---d~  154 (315)
                         ..|.....+++.++++..+       -.|.+.+|..+. +..+.+.+|......+.+.-+.   .++..+..   .+
T Consensus       148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence               5577777788888877543       246788999874 4456677886655444432211   24444433   27


Q ss_pred             eEEEEcCCCC---cc-e--eEe----e--cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-Ccee
Q psy9936         155 TVTMWSPTVQ---KP-L--ASL----L--CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINN  221 (315)
Q Consensus       155 ~i~i~d~~~~---~~-~--~~~----~--~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~  221 (315)
                      .+.|.++...   .+ .  +..    .  ....-..++..|+....++.-+.-|.|++||+.++ .++..-+... +|..
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrIs~~~iF~  305 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFV  305 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEE
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecccCCceEE
Confidence            8999988542   11 1  111    1  11233457888888888888899999999999999 8777766544 4433


Q ss_pred             EEEcc--CCeEEEEcCCEEEe
Q psy9936         222 LAFSQ--RGLLATSRGNIVEF  240 (315)
Q Consensus       222 ~~~s~--~g~~~~~~~~~i~~  240 (315)
                      .+-+.  .|.+.+...|.+-.
T Consensus       306 t~~~~~~~Gi~~Vnr~GqVl~  326 (494)
T 1bpo_A          306 TAPHEATAGIIGVNRKGQVLS  326 (494)
T ss_dssp             EEEETTTTEEEEEETTCEEEE
T ss_pred             ecccCCCCcEEEEccCceEEE
Confidence            33332  23566666776653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.19  E-value=0.0014  Score=55.22  Aligned_cols=219  Identities=12%  Similarity=0.085  Sum_probs=119.9

Q ss_pred             CcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEE---e-----cCCCceeEEEEeec----CcEEEEEe-------
Q psy9936          11 FGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACE---M-----NVMEEVYDIKWLHL----ETMFAVAQ-------   70 (315)
Q Consensus        11 ~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~---~-----~~~~~v~~~~~~~~----~~~l~~~~-------   70 (315)
                      ..+..|+|.|+|+ ++++ ...|.|++++.. +.....   +     ........++|+|+    +.++++-.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4568999999998 5554 567899999853 332211   1     12235789999995    55444432       


Q ss_pred             -CCeEEEEeCCCC-----EEEE-eec-------CCceEEEEEcCCCceEEEEcC-------------CCeEEEEEccCCe
Q psy9936          71 -KDWVYIYDNQGI-----ELHC-LKV-------LNKVTRMEFLPYHFLLATASE-------------EGYLSWLDTSIGK  123 (315)
Q Consensus        71 -~~~i~i~~~~~~-----~~~~-~~~-------~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~  123 (315)
                       ...|..++.+..     .... +..       ......+.|.|+|.++++.+.             .|.|.-++....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             124666665321     1111 111       122457999999966655433             2467777765220


Q ss_pred             ------------EEEEe-ccCCCCeEEEEEcC-CCCEEEEEc-CCCeEEEEcCCCC------------------------
Q psy9936         124 ------------IVSDF-SAKKGKLSVMTQNP-YNACICLGH-RNGTVTMWSPTVQ------------------------  164 (315)
Q Consensus       124 ------------~~~~~-~~~~~~v~~~~~~p-~~~~l~~~~-~d~~i~i~d~~~~------------------------  164 (315)
                                  ....+ .++ .....++|+| +|+++++-. .++.=.|.-+..+                        
T Consensus       176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                        11111 122 2367899999 666554422 1211122211111                        


Q ss_pred             -------cceeEeecccccEEEEEECC-------CCCEEEEeeCCCcEEEEEccCCCCCeeE--ec-c-CCCceeEEEcc
Q psy9936         165 -------KPLASLLCHKAGIQSVAVNH-------TGTYMATSAGDSQLRIWDVRNLEGPLNT--FR-T-RTPINNLAFSQ  226 (315)
Q Consensus       165 -------~~~~~~~~~~~~i~~~~~sp-------~g~~l~~~~~d~~i~iwd~~~~~~~~~~--~~-~-~~~v~~~~~s~  226 (315)
                             .++..+. +...+..+.|..       +|.++++.-..+.|...++..+ .....  +- . ...+..+++.|
T Consensus       255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-KVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-eEeeeEEcccCCCCceeEEEECC
Confidence                   1122222 234567788863       4667766666778888888754 43322  21 1 23588999999


Q ss_pred             CCe-EEEEc
Q psy9936         227 RGL-LATSR  234 (315)
Q Consensus       227 ~g~-~~~~~  234 (315)
                      ||. ++++.
T Consensus       333 dG~lyv~td  341 (353)
T 2g8s_A          333 DGYLYVLTD  341 (353)
T ss_dssp             TSCEEEEEC
T ss_pred             CCcEEEEEe
Confidence            995 55443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.00093  Score=58.57  Aligned_cols=193  Identities=7%  Similarity=0.009  Sum_probs=116.1

Q ss_pred             cEEEEEE-------cCCCCEEEEEcCCC-------eEEEEEccC-ceEE-----EEecCCCceeEEEEeec-CcEEEEEe
Q psy9936          12 GIYRMNY-------TKNGRHLLLGGKRG-------HVAAFDWVR-KTLA-----CEMNVMEEVYDIKWLHL-ETMFAVAQ   70 (315)
Q Consensus        12 ~v~~~~~-------s~~~~~l~~~~~dg-------~i~v~~~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~l~~~~   70 (315)
                      .+..++|       +++|.+|+++...+       .|.+++... +...     ..+........++.+|+ +.++++..
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~  266 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY  266 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence            5899999       99999666655443       366665333 2221     12221223467788995 45454443


Q ss_pred             -CCeEEEEeCC-------CCEE-------------E--EeecCCceEEEEEcCCCceEEE-EcCCCeEEEEEcc--CCeE
Q psy9936          71 -KDWVYIYDNQ-------GIEL-------------H--CLKVLNKVTRMEFLPYHFLLAT-ASEEGYLSWLDTS--IGKI  124 (315)
Q Consensus        71 -~~~i~i~~~~-------~~~~-------------~--~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~--~~~~  124 (315)
                       ++.|+.+|+.       +..+             .  ..........++|+|+|+.|+. -+..+.|+.++..  .+..
T Consensus       267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~  346 (496)
T 3kya_A          267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF  346 (496)
T ss_dssp             TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee
Confidence             6789999986       3322             1  1222245689999999995444 4567789986654  2321


Q ss_pred             --EEEeccC---C------------CCeE-EEEEc-------CCCCEEEEEcCCCeEEEEcCCCCcceeEeecc------
Q psy9936         125 --VSDFSAK---K------------GKLS-VMTQN-------PYNACICLGHRNGTVTMWSPTVQKPLASLLCH------  173 (315)
Q Consensus       125 --~~~~~~~---~------------~~v~-~~~~~-------p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------  173 (315)
                        ...+.+.   .            .... .++..       ++|.++++-..++.|+.++. ++ .+.++-+.      
T Consensus       347 ~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~  424 (496)
T 3kya_A          347 ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSL  424 (496)
T ss_dssp             CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHH
T ss_pred             cccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccc
Confidence              0122111   0            1244 45554       56677777677889999994 45 34444322      


Q ss_pred             ------------------cccEEEEEECCC-CCEEEEeeCCCcEEEEEccCC
Q psy9936         174 ------------------KAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       174 ------------------~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~  206 (315)
                                        -.....|+++++ |.++++=..+..|+.+++...
T Consensus       425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                              124678999987 766666666778999988765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.11  E-value=0.0021  Score=53.90  Aligned_cols=188  Identities=14%  Similarity=0.196  Sum_probs=114.5

Q ss_pred             CcEEEEEEcCCCCEEEEEc------------CCCeEEEEEccC--ceEEEEecC--------CCceeEEEEee--cCc--
Q psy9936          11 FGIYRMNYTKNGRHLLLGG------------KRGHVAAFDWVR--KTLACEMNV--------MEEVYDIKWLH--LET--   64 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~------------~dg~i~v~~~~~--~~~~~~~~~--------~~~v~~~~~~~--~~~--   64 (315)
                      .+.-.++..|+|..+++++            .+|.|.++|..+  .+. ..+..        .-....+.+.+  ++.  
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            4567788889886555542            689999999873  232 22221        12567788766  343  


Q ss_pred             EEEEEe---CCeEEEEeC--CCCEEEEee---c--CCceEEEEEcCCCceEEEEc-----------------CCCeEEEE
Q psy9936          65 MFAVAQ---KDWVYIYDN--QGIELHCLK---V--LNKVTRMEFLPYHFLLATAS-----------------EEGYLSWL  117 (315)
Q Consensus        65 ~l~~~~---~~~i~i~~~--~~~~~~~~~---~--~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~~  117 (315)
                      ++++-.   +..|.+|++  .+.....+.   +  ....+.+.+.++|.+.++..                 ..|.|..+
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            444432   357777765  444433332   2  25678999999998777654                 12455555


Q ss_pred             EccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCC-Ccc--eeEeecccccEEEEEECC-CCCEEEEe
Q psy9936         118 DTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVTMWSPTV-QKP--LASLLCHKAGIQSVAVNH-TGTYMATS  192 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~sp-~g~~l~~~  192 (315)
                      |.  ++. ..+...-...+.++|+||++.|+.+. ..+.|..|++.. ++.  ...+ ...+..-.+++.+ +|++.+++
T Consensus       209 d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          209 SP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             CT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             EC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence            54  322 22222334578999999998776654 578999999863 321  1233 2346678899999 59987766


Q ss_pred             eCCC-cEEEEEc
Q psy9936         193 AGDS-QLRIWDV  203 (315)
Q Consensus       193 ~~d~-~i~iwd~  203 (315)
                      ..++ .|..|+.
T Consensus       285 ~~~g~~v~~~~P  296 (355)
T 3sre_A          285 HPNGMRIFFYDA  296 (355)
T ss_dssp             ESCHHHHHSCCT
T ss_pred             cCCceEEEEECC
Confidence            5443 3444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.10  E-value=0.0024  Score=53.59  Aligned_cols=178  Identities=10%  Similarity=0.083  Sum_probs=107.2

Q ss_pred             ceeEEEEeecCcEEEEE-------------eCCeEEEEeCCC--CEEEEeecC--------CceEEEEEcC--CCc--eE
Q psy9936          53 EVYDIKWLHLETMFAVA-------------QKDWVYIYDNQG--IELHCLKVL--------NKVTRMEFLP--YHF--LL  105 (315)
Q Consensus        53 ~v~~~~~~~~~~~l~~~-------------~~~~i~i~~~~~--~~~~~~~~~--------~~v~~~~~~~--~~~--~l  105 (315)
                      ..-++...|+|..++++             .+|.|.++|.+.  .....+...        -....+.+.+  ++.  ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45566777888777765             478999999852  233333221        2566777765  343  44


Q ss_pred             EEEcC--CCeEEEEEccCC--e--EEEEeccC-CCCeEEEEEcCCCCEEEEEc-----------------CCCeEEEEcC
Q psy9936         106 ATASE--EGYLSWLDTSIG--K--IVSDFSAK-KGKLSVMTQNPYNACICLGH-----------------RNGTVTMWSP  161 (315)
Q Consensus       106 ~~~~~--d~~i~~~d~~~~--~--~~~~~~~~-~~~v~~~~~~p~~~~l~~~~-----------------~d~~i~i~d~  161 (315)
                      ++-..  +.+|.+|++...  .  .+..+.+. -...+.+.+.++|.++++..                 ..|.|.-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44333  567888877643  2  23333322 23578999999998777654                 1245555555


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCC--eeEeccCCCceeEEEcc-CCe-EEEE
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGP--LNTFRTRTPINNLAFSQ-RGL-LATS  233 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~g~-~~~~  233 (315)
                        ++ +..+...-...+.++||||+++|+.+. ..+.|..|++......  ...+......-.+++++ +|. ++++
T Consensus       211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence              33 333332335678999999998777665 5678999998743122  12333333467888888 575 4444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.93  E-value=0.0051  Score=51.78  Aligned_cols=139  Identities=12%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             CceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEe---e----cCCceEEEEEcCC---CceEEEEcC-C-----CeEE
Q psy9936          52 EEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCL---K----VLNKVTRMEFLPY---HFLLATASE-E-----GYLS  115 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~---~----~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~  115 (315)
                      .....++|.|+|+++++...+.|++++ ++. ...+   .    .......++++|+   +..|+++.. .     +.|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE-TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE-CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            456799999999988887789999998 443 2221   1    1256889999998   444544432 2     5788


Q ss_pred             EEEccCCe-----EE-EEec---cCCCCeEEEEEcCCCCEEEEEcC-------------CCeEEEEcCCCC---------
Q psy9936         116 WLDTSIGK-----IV-SDFS---AKKGKLSVMTQNPYNACICLGHR-------------NGTVTMWSPTVQ---------  164 (315)
Q Consensus       116 ~~d~~~~~-----~~-~~~~---~~~~~v~~~~~~p~~~~l~~~~~-------------d~~i~i~d~~~~---------  164 (315)
                      .|+...+.     .+ ..+.   ........++|.|||.++++.+.             .+.|.-++....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            88876431     11 1132   11112467999999976665432             256777776531         


Q ss_pred             ---cceeEe-ecccccEEEEEECC-CCCEEEEee
Q psy9936         165 ---KPLASL-LCHKAGIQSVAVNH-TGTYMATSA  193 (315)
Q Consensus       165 ---~~~~~~-~~~~~~i~~~~~sp-~g~~l~~~~  193 (315)
                         .....+ .++. ....++|+| +|.++++-.
T Consensus       189 ~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          189 RRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             CTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred             CCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence               011111 2333 356889999 677655543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.88  E-value=0.0039  Score=54.76  Aligned_cols=219  Identities=11%  Similarity=0.074  Sum_probs=127.9

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEecC-C-------------------------Ccee--EEEEe---ecCcEEEEEe--
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMNV-M-------------------------EEVY--DIKWL---HLETMFAVAQ--   70 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~~-~-------------------------~~v~--~~~~~---~~~~~l~~~~--   70 (315)
                      .+.+|+..|.|+|+-+.+++.+..+.. .                         +...  .+++.   .||++|..-.  
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            356788899999999999998776641 0                         1111  23332   2577887776  


Q ss_pred             CCeEEEEeCCC---CEEEEeecCCceEEEEEc--CCCceEEEEcC-------CCeE------------EEEEccCCeEEE
Q psy9936          71 KDWVYIYDNQG---IELHCLKVLNKVTRMEFL--PYHFLLATASE-------EGYL------------SWLDTSIGKIVS  126 (315)
Q Consensus        71 ~~~i~i~~~~~---~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------d~~i------------~~~d~~~~~~~~  126 (315)
                      +..|-..+++.   .++..++....+..+.|.  |+..++++++.       ||..            ...|..+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            45666667644   344445556788888886  67777777754       3221            112323333222


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEcCC--------------------------------------C--eEEEEcCCC---
Q psy9936         127 DFSAKKGKLSVMTQNPYNACICLGHRN--------------------------------------G--TVTMWSPTV---  163 (315)
Q Consensus       127 ~~~~~~~~v~~~~~~p~~~~l~~~~~d--------------------------------------~--~i~i~d~~~---  163 (315)
                      ++.. .+....+...++|.+.++.+.+                                      +  .+.+.|.+.   
T Consensus       232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~  310 (638)
T 3sbq_A          232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG  310 (638)
T ss_dssp             EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred             EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence            2211 1122334556777776665433                                      1  344555443   


Q ss_pred             -CcceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCC-----CC-------eeEeccCCCceeEEEccCCe
Q psy9936         164 -QKPLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLE-----GP-------LNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       164 -~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~-----~~-------~~~~~~~~~v~~~~~s~~g~  229 (315)
                       +..+..+-.-......+.++|||+|++.++ .+.++.++|+....     +.       +...+...+....+|+++|.
T Consensus       311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~  390 (638)
T 3sbq_A          311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN  390 (638)
T ss_dssp             BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred             cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence             222222222234456789999999887765 57789999998420     11       22333444688999999995


Q ss_pred             EEEE--cCCEEEecCC
Q psy9936         230 LATS--RGNIVEFLKP  243 (315)
Q Consensus       230 ~~~~--~~~~i~~~~~  243 (315)
                      ...+  -|+.|..|+.
T Consensus       391 aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          391 AYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             EEEEETTTTEEEEEEH
T ss_pred             eEeeeeecceEEEEec
Confidence            4333  4888887654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.86  E-value=0.0016  Score=53.33  Aligned_cols=181  Identities=10%  Similarity=0.099  Sum_probs=98.3

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCce---EEEEecCC-CceeEEEEeecCcEEEEEe------CCeEEEEeCCCCEEE
Q psy9936          21 NGRHLLLGGKR-----GHVAAFDWVRKT---LACEMNVM-EEVYDIKWLHLETMFAVAQ------KDWVYIYDNQGIELH   85 (315)
Q Consensus        21 ~~~~l~~~~~d-----g~i~v~~~~~~~---~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~~~i~i~~~~~~~~~   85 (315)
                      ++..++.|+.+     ..+.+||..+.+   ....-... ......+...++++++.++      -..+.+||+......
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            56667777654     368899988766   43332211 1111122223677777664      246899999776655


Q ss_pred             EeecC---CceEEEEEcCCCceEEEEcCC-----CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC--
Q psy9936          86 CLKVL---NKVTRMEFLPYHFLLATASEE-----GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN--  153 (315)
Q Consensus        86 ~~~~~---~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d--  153 (315)
                      .+...   ..-.++. ..++.+++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++.+++.|+.+  
T Consensus       142 ~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~  218 (301)
T 2vpj_A          142 MLGDMQTAREGAGLV-VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGT  218 (301)
T ss_dssp             EEEECSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred             ECCCCCCCcccceEE-EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCC
Confidence            54322   1111222 2267777777654     4588999987754433  1111111222232  56777777764  


Q ss_pred             ---CeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         154 ---GTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       154 ---~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                         ..+.+||+.+.+...  .+.........+.+  ++++++.|+.++     .+.+||+.+.
T Consensus       219 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence               468999998764322  12111111122222  677777777653     5778887764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.80  E-value=0.0044  Score=52.72  Aligned_cols=140  Identities=16%  Similarity=0.201  Sum_probs=93.1

Q ss_pred             eecCcEEEEEeCCeEEEEeCC-CCEEEEeec-----CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe----------
Q psy9936          60 LHLETMFAVAQKDWVYIYDNQ-GIELHCLKV-----LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK----------  123 (315)
Q Consensus        60 ~~~~~~l~~~~~~~i~i~~~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------  123 (315)
                      ..+|.-++.+.++.|+.-++. ....+.+..     ...+..+..+|+|.+||..+. ..|.|..+..+.          
T Consensus        29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            346667777777888877764 333333332     235778999999998888764 478888876321          


Q ss_pred             --EEEEecc------CCCCeEEEEEcCCC---CEEEEEcCCCeEEEEcCCCC--cceeEee---------cccccEEEEE
Q psy9936         124 --IVSDFSA------KKGKLSVMTQNPYN---ACICLGHRNGTVTMWSPTVQ--KPLASLL---------CHKAGIQSVA  181 (315)
Q Consensus       124 --~~~~~~~------~~~~v~~~~~~p~~---~~l~~~~~d~~i~i~d~~~~--~~~~~~~---------~~~~~i~~~~  181 (315)
                        ..+.+..      ...+|..+.|+|-+   ..|++-..|+.|++||+...  ++. .+.         .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence              1122221      24679999999954   58999999999999998852  233 222         1225788999


Q ss_pred             ECCCCCEEEEee--CCCcEEEE
Q psy9936         182 VNHTGTYMATSA--GDSQLRIW  201 (315)
Q Consensus       182 ~sp~g~~l~~~~--~d~~i~iw  201 (315)
                      |.++|-.|...+  ..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999887666644  77776543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.79  E-value=0.0099  Score=48.79  Aligned_cols=175  Identities=11%  Similarity=-0.024  Sum_probs=107.5

Q ss_pred             EEEcCCCCEEEEEcC--------------CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe---C--CeEEE
Q psy9936          16 MNYTKNGRHLLLGGK--------------RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ---K--DWVYI   76 (315)
Q Consensus        16 ~~~s~~~~~l~~~~~--------------dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~--~~i~i   76 (315)
                      --++++|.+|+.+..              ...|+..++++.+.......    ....|++++..|+.+.   +  ..|+.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC----CccEEEEeCCEEEEEeecCCCCceEEE
Confidence            346888998886643              24678888877654333221    1236788888887665   3  46777


Q ss_pred             EeCCCCEEEEeecCCceEEEEEcCCCceEEEEcC-CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC--
Q psy9936          77 YDNQGIELHCLKVLNKVTRMEFLPYHFLLATASE-EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN--  153 (315)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--  153 (315)
                      .++++.....+.....   ..++|+++.|+-.+. ...|.+.++..+.....+.   +... ..++|++.+|+.....  
T Consensus       134 ~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~  206 (302)
T 3s25_A          134 IRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRD  206 (302)
T ss_dssp             EETTSCCCEEEESSCC---CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGT
T ss_pred             EECCCCCeEEEeCCCc---eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCC
Confidence            7777765555544322   456778887776654 5678888887665443333   2222 3456999888766543  


Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeC--CCcEEEEEccCC
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG--DSQLRIWDVRNL  206 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~--d~~i~iwd~~~~  206 (315)
                      ..|..-++.... ...+.  ...+  ..|+|++.+|+.++.  .+.|..-++...
T Consensus       207 ~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          207 NAIVHVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             TEEEEECSSSCC-CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             cEEEEEECCCCC-eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            467777777554 33443  2233  348889998876643  345666666553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.79  E-value=0.0052  Score=50.23  Aligned_cols=181  Identities=12%  Similarity=0.160  Sum_probs=97.5

Q ss_pred             CCCEEEEEc-CC-----CeEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEe-C-----CeEEEEeCCCCE---E
Q psy9936          21 NGRHLLLGG-KR-----GHVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGIE---L   84 (315)
Q Consensus        21 ~~~~l~~~~-~d-----g~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~---~   84 (315)
                      ++..++.|+ .+     ..+.+||..+.+....-... ..........++.+++.|+ +     ..+.+||+....   .
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            455667776 32     36889999887754432211 1122222334667766664 2     468999986544   4


Q ss_pred             EEeecC---CceEEEEEcCCCceEEEEcCC-----CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC-
Q psy9936          85 HCLKVL---NKVTRMEFLPYHFLLATASEE-----GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN-  153 (315)
Q Consensus        85 ~~~~~~---~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d-  153 (315)
                      ..+...   ..-.++.. .++.+++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++++++.|+.+ 
T Consensus        94 ~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  170 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDG  170 (301)
T ss_dssp             EEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCC
Confidence            433221   11112222 256777777643     3588999887753332  2211111222222  67777777654 


Q ss_pred             ----CeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCC-----CcEEEEEccCC
Q psy9936         154 ----GTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGD-----SQLRIWDVRNL  206 (315)
Q Consensus       154 ----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d-----~~i~iwd~~~~  206 (315)
                          ..+.+||+.+.+-..  .+.........+.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus       171 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          171 LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence                468899988764322  12111111122222  56777777764     35889998874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.78  E-value=0.012  Score=49.16  Aligned_cols=220  Identities=10%  Similarity=0.061  Sum_probs=122.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEE--Eec-----CCCceeEEEEeec----CcEEEEE---eCCeEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLAC--EMN-----VMEEVYDIKWLHL----ETMFAVA---QKDWVY   75 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--~~~-----~~~~v~~~~~~~~----~~~l~~~---~~~~i~   75 (315)
                      -.....|+|.|||.++++-...|.|++++..+++...  .+.     .......++++|+    +.+.++-   .++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            3567899999999988776558999999866555322  221     2346789999985    5444432   245666


Q ss_pred             EEeCCC----------CEEE--Eeec--CCceEEEEEcCCCceEEEEcC-------------CCeEEEEEccCC------
Q psy9936          76 IYDNQG----------IELH--CLKV--LNKVTRMEFLPYHFLLATASE-------------EGYLSWLDTSIG------  122 (315)
Q Consensus        76 i~~~~~----------~~~~--~~~~--~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~------  122 (315)
                      -|...+          .+..  .+..  ......|.|.|+|.++++.+.             .|.|.-++....      
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            665533          1111  1211  123456999999987766542             355555555421      


Q ss_pred             ---eEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCC--eEEEEcC--------CCC--------cceeEeecccccEEEE
Q psy9936         123 ---KIVSDFSAKKGKLSVMTQNPYNACICLG-HRNG--TVTMWSP--------TVQ--------KPLASLLCHKAGIQSV  180 (315)
Q Consensus       123 ---~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~--~i~i~d~--------~~~--------~~~~~~~~~~~~i~~~  180 (315)
                         ..+.. .+|.. ...++|+|+|.++++- +.++  .|.....        ..+        .++..+..+......+
T Consensus       191 f~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~  268 (347)
T 3das_A          191 FPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI  268 (347)
T ss_dssp             STTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred             CCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence               11111 23433 4679999998766553 2232  2332211        001        1233333222356677


Q ss_pred             EECCCCCEEEEeeCCCcEEEEEccCCCCC----eeEecc-CCCceeEEEccCCeEEEE
Q psy9936         181 AVNHTGTYMATSAGDSQLRIWDVRNLEGP----LNTFRT-RTPINNLAFSQRGLLATS  233 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~-~~~v~~~~~s~~g~~~~~  233 (315)
                      +|. +|..+...-..+.|....+... ..    ...+.. ...+.+++..|||.+.++
T Consensus       269 ~~~-~g~~~~~~l~~~~l~~v~~~~~-~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~  324 (347)
T 3das_A          269 AYA-EGSVWMAGLRGERLWRIPLKGT-AAAADPQAFLEGEYGRLRTVAPAGGDKLWLV  324 (347)
T ss_dssp             EEE-TTEEEEEESTTCSEEEEEEETT-EESSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred             EEE-cCceeeccccCCEEEEEEecCC-ceecceEEeecCCCCCccEEEECCCCcEEEE
Confidence            776 4555555555556766666543 21    112222 235899999999954443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.75  E-value=0.0075  Score=49.42  Aligned_cols=220  Identities=6%  Similarity=-0.023  Sum_probs=113.2

Q ss_pred             CEEEEEcCC--CeEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEe-C----CeEEEEeCCCCEEEEeecC--Cc
Q psy9936          23 RHLLLGGKR--GHVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQ-K----DWVYIYDNQGIELHCLKVL--NK   92 (315)
Q Consensus        23 ~~l~~~~~d--g~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~----~~i~i~~~~~~~~~~~~~~--~~   92 (315)
                      ..++.|+.+  ..+.+||..+.+....-... ..........++.+++.|+ +    ..+.+||+.......+...  ..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   92 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR   92 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence            355566643  57899999888765432211 1112222234666766664 2    5789999977665554422  11


Q ss_pred             e-EEEEEcCCCceEEEEcCC------CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcC---------CC
Q psy9936          93 V-TRMEFLPYHFLLATASEE------GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHR---------NG  154 (315)
Q Consensus        93 v-~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~---------d~  154 (315)
                      . .++. ..++.+++.|+.+      ..+.+||+.+.+-...  +.........+.  -++.+++.|+.         -.
T Consensus        93 ~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           93 DSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             BSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECC
T ss_pred             cceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccc
Confidence            1 1222 2256777777754      4589999987754332  111111122222  25667777653         34


Q ss_pred             eEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCC-----CcEEEEEccCCCCCeeEec---cCCCceeEEE
Q psy9936         155 TVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGD-----SQLRIWDVRNLEGPLNTFR---TRTPINNLAF  224 (315)
Q Consensus       155 ~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~  224 (315)
                      .+.+||+.+.+-..  .+......-..+.+  ++++++.|+.+     ..+.+||+.+.  .-..+.   ....-..++.
T Consensus       170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          170 SCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEE
T ss_pred             eEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEE
Confidence            58899988764221  11111111122222  56777777653     35889998764  222221   1111122232


Q ss_pred             ccCCeEEEEc-C-----CEEEecCCCceeec
Q psy9936         225 SQRGLLATSR-G-----NIVEFLKPPEINFE  249 (315)
Q Consensus       225 s~~g~~~~~~-~-----~~i~~~~~~~~~~~  249 (315)
                      ..+..++.++ +     +.+..+++..-.|.
T Consensus       246 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          246 VGSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             ETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            2233455544 1     45667777555554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.72  E-value=0.0035  Score=51.37  Aligned_cols=181  Identities=13%  Similarity=0.138  Sum_probs=97.7

Q ss_pred             CCCEEEEEcCC-----CeEEEEEccCceEEEEecCCC-ceeEEEEeecCcEEEEEe-C-----CeEEEEeCCCCEEEEee
Q psy9936          21 NGRHLLLGGKR-----GHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGIELHCLK   88 (315)
Q Consensus        21 ~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~~~~   88 (315)
                      ++..++.|+.+     ..+.+||..+.+....-.... .....+...++.+++.|+ +     ..+.+||+.......+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            55666677644     358889988877554433111 111112223666666664 3     36888998776665543


Q ss_pred             cC---CceEEEEEcCCCceEEEEcCC-------CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC---
Q psy9936          89 VL---NKVTRMEFLPYHFLLATASEE-------GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN---  153 (315)
Q Consensus        89 ~~---~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d---  153 (315)
                      ..   ..-.+++. .++.+++.|+.+       ..+.+||+.+.+-...  +.........+.+  ++.+++.|+.+   
T Consensus       141 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          141 PMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPL  217 (302)
T ss_dssp             CCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSS
T ss_pred             CCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCc
Confidence            22   11112222 256677776542       3588999987754332  2111111222222  56777777754   


Q ss_pred             --CeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         154 --GTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       154 --~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                        ..+.+||+.+.+...  .+.........+.  .++.+++.|+.++     .+.+||+.+.
T Consensus       218 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          218 VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence              368999998764321  1111111111222  2677777777654     4888888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.72  E-value=0.0043  Score=51.00  Aligned_cols=182  Identities=9%  Similarity=0.037  Sum_probs=98.9

Q ss_pred             cCCCCEEEEEcCC----CeEEEEEccCceEEEEecCCC-ceeEEEEeecCcEEEEEeC----------CeEEEEeCCCCE
Q psy9936          19 TKNGRHLLLGGKR----GHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQK----------DWVYIYDNQGIE   83 (315)
Q Consensus        19 s~~~~~l~~~~~d----g~i~v~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~----------~~i~i~~~~~~~   83 (315)
                      .-++..++.|+.+    ..+.+||..+.+....-.... .........++.+++.|+.          +.+.+||+....
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            3456677777642    368899998887654322111 1111122236666665532          468899997776


Q ss_pred             EEEeecC----CceEEEEEcCCCceEEEEcCC-----CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcC
Q psy9936          84 LHCLKVL----NKVTRMEFLPYHFLLATASEE-----GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        84 ~~~~~~~----~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      ...+...    .....+.+  ++.+++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++.+++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            6554322    11122222  56777777643     3588999887654322  1111111222333  5677777765


Q ss_pred             C-----CeEEEEcCCCCcce--eEeecccccEEEEEECCCCCEEEEeeCC-----CcEEEEEccCC
Q psy9936         153 N-----GTVTMWSPTVQKPL--ASLLCHKAGIQSVAVNHTGTYMATSAGD-----SQLRIWDVRNL  206 (315)
Q Consensus       153 d-----~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----~~i~iwd~~~~  206 (315)
                      +     ..+.+||+.+.+-.  ..+.........+.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            4     46889998876422  112111112222333  67777777654     45889998764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.69  E-value=0.0035  Score=53.36  Aligned_cols=139  Identities=9%  Similarity=0.209  Sum_probs=94.0

Q ss_pred             cCCCCEEEEEcCCCeEEEEEccCceEEEEecCC-----CceeEEEEeecCcEEEEEeCCeEEEEeCC-CC----------
Q psy9936          19 TKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM-----EEVYDIKWLHLETMFAVAQKDWVYIYDNQ-GI----------   82 (315)
Q Consensus        19 s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-~~----------   82 (315)
                      +.+|..++++. ++.||.-++......+.+...     ..+..+..+|+|.+||..++..|.|..+. +.          
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            44555555543 456777776643333333322     25788999999999999999999998873 21          


Q ss_pred             --EEEEee-------cCCceEEEEEcCC---CceEEEEcCCCeEEEEEccCC--eEEEEec---------cCCCCeEEEE
Q psy9936          83 --ELHCLK-------VLNKVTRMEFLPY---HFLLATASEEGYLSWLDTSIG--KIVSDFS---------AKKGKLSVMT  139 (315)
Q Consensus        83 --~~~~~~-------~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~--~~~~~~~---------~~~~~v~~~~  139 (315)
                        ....+.       ...+|..+.|+|-   +..|++-..|+.|++||+...  ++. .+.         .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence              111222       1367999999996   468999999999999999752  222 222         2225688999


Q ss_pred             EcCCCCEEEEE--cCCCeEEEE
Q psy9936         140 QNPYNACICLG--HRNGTVTMW  159 (315)
Q Consensus       140 ~~p~~~~l~~~--~~d~~i~i~  159 (315)
                      |.+++-.|+..  ...|.|.-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            99988766664  477887655

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.68  E-value=0.0038  Score=51.27  Aligned_cols=173  Identities=8%  Similarity=-0.033  Sum_probs=101.5

Q ss_pred             EcCCCCEEEEEc--CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--C-------------CeEEEEeCC
Q psy9936          18 YTKNGRHLLLGG--KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--K-------------DWVYIYDNQ   80 (315)
Q Consensus        18 ~s~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~-------------~~i~i~~~~   80 (315)
                      |+++|..|+...  .++.|+..+.+..........    .+--+++++.+|..+.  +             ..|+..+++
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            345677666553  246677777655443322221    1334578888877664  2             357777887


Q ss_pred             CCEEEEeecCCceEEEEEcCCCceEEEEc----CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CCe
Q psy9936          81 GIELHCLKVLNKVTRMEFLPYHFLLATAS----EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NGT  155 (315)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~  155 (315)
                      +.....+....   +..|+++++.|+-..    ....|...++.. .....+..+..    ..++|+++.|+..+. ...
T Consensus        97 g~~~~~l~~~~---~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~  168 (302)
T 3s25_A           97 GHGSTVLDPDP---CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQ  168 (302)
T ss_dssp             SCCCEEEECSC---EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred             CCcceEeecCC---ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence            76544444332   236778888888765    344566666653 33344443332    456788887776654 678


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC--cEEEEEccCC
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS--QLRIWDVRNL  206 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--~i~iwd~~~~  206 (315)
                      |.+.++..+.....+.   +... ..++|++.+|+-....+  .|..-++...
T Consensus       169 Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          169 LYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             EEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred             EEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence            8888887664333232   2222 23569999888776543  4666666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.61  E-value=0.023  Score=47.74  Aligned_cols=140  Identities=9%  Similarity=0.011  Sum_probs=83.8

Q ss_pred             CceeEEEEeecCcEEEEEeCCeEEEEeCCCC-EEEEee----cCCceEEEEEcCC---CceEEEEcC----C----CeEE
Q psy9936          52 EEVYDIKWLHLETMFAVAQKDWVYIYDNQGI-ELHCLK----VLNKVTRMEFLPY---HFLLATASE----E----GYLS  115 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~----d----~~i~  115 (315)
                      .....++|.|+|+++++-.++.|++++.++. .+..+.    .......++++|+   +..|+++..    +    ..|.
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~  108 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI  108 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence            4578899999999888877899999986554 111111    1256889999997   444444432    3    5688


Q ss_pred             EEEccCC-------eEE-EEecc-CCCCeEEEEEcCCCCEEEEEcC-------------CCeEEEEcCCCCc-------c
Q psy9936         116 WLDTSIG-------KIV-SDFSA-KKGKLSVMTQNPYNACICLGHR-------------NGTVTMWSPTVQK-------P  166 (315)
Q Consensus       116 ~~d~~~~-------~~~-~~~~~-~~~~v~~~~~~p~~~~l~~~~~-------------d~~i~i~d~~~~~-------~  166 (315)
                      .|+....       +.+ ..+.. .......++|.|||.++++.+.             .|.|.-++....-       .
T Consensus       109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~  188 (354)
T 3a9g_A          109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN  188 (354)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred             EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence            8887643       111 11221 1112467999999986666432             2566666654220       0


Q ss_pred             eeEe-ecccccEEEEEECC-CCCEEEEe
Q psy9936         167 LASL-LCHKAGIQSVAVNH-TGTYMATS  192 (315)
Q Consensus       167 ~~~~-~~~~~~i~~~~~sp-~g~~l~~~  192 (315)
                      ...+ .++.. ...++|+| +|.++++-
T Consensus       189 ~~i~a~G~rn-p~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          189 SPIWSYGHRN-PQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCEEEECCSC-CCEEEECTTTCCEEEEE
T ss_pred             CcEEEEccCC-cceEEEeCCCCCEEEEe
Confidence            1111 23433 46899999 67755554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.61  E-value=0.046  Score=51.00  Aligned_cols=216  Identities=15%  Similarity=0.178  Sum_probs=129.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEee
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLK   88 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~   88 (315)
                      ...|.++....+| .|.+|+.+| +..||..+.+...... ....|.++.. .++.+.++ ..+-+..++..+.....+.
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWig-t~~Gl~~~~~~~~~~~~~~  137 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLG-ALNGLYTYQLQSRKLTSFD  137 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEE-ETTEEEEEETTTCCEEEEC
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEE-cCCcceeEeCCCCeEEEec
Confidence            3568888777776 555666665 8899988765432111 1234666643 46665554 4447888998665554441


Q ss_pred             ------cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe-ccC----CCCeEEEEEcCCCCEEEEEcCCCeEE
Q psy9936          89 ------VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF-SAK----KGKLSVMTQNPYNACICLGHRNGTVT  157 (315)
Q Consensus        89 ------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~----~~~v~~~~~~p~~~~l~~~~~d~~i~  157 (315)
                            ....|.++....++.+.+ ++.+ -+..||..+++..... ...    ...|.++...+++..|..|.. +-+.
T Consensus       138 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~  214 (758)
T 3ott_A          138 TRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF  214 (758)
T ss_dssp             HHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred             cCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence                  124678888777776554 4444 5888888766533211 111    224788888777765555553 4688


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc---------CCCceeEEEccCC
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT---------RTPINNLAFSQRG  228 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~s~~g  228 (315)
                      .+|..+++...........|.++...++|.+.+. +.+ -+.+++..+. . +..+..         ...|.++..+.+|
T Consensus       215 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g  290 (758)
T 3ott_A          215 QYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTT-P-LQHIIHDSRNIQSLTNNIIWNIFADQEH  290 (758)
T ss_dssp             EEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTS-C-CEEECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred             EEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCC-c-EEEEEcCCCCcCcCCcCeEEEEEEcCCC
Confidence            8998766432211112346888888888876544 344 4788887664 2 222221         1247888888887


Q ss_pred             -eEEEEcCC
Q psy9936         229 -LLATSRGN  236 (315)
Q Consensus       229 -~~~~~~~~  236 (315)
                       +.+++..|
T Consensus       291 ~lWiGT~~G  299 (758)
T 3ott_A          291 NIWLGTDYG  299 (758)
T ss_dssp             CEEEEESSS
T ss_pred             CEEEEeCCc
Confidence             56666555

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.61  E-value=0.006  Score=50.03  Aligned_cols=181  Identities=8%  Similarity=0.082  Sum_probs=99.2

Q ss_pred             CCCEEEEEcCC----CeEEEEEccCceEEEEecCCC-ceeEEEEeecCcEEEEEe-C------CeEEEEeCCCCEEEEee
Q psy9936          21 NGRHLLLGGKR----GHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQ-K------DWVYIYDNQGIELHCLK   88 (315)
Q Consensus        21 ~~~~l~~~~~d----g~i~v~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~------~~i~i~~~~~~~~~~~~   88 (315)
                      ++..++.|+.+    ..+.+||..+.+....-.... .....+..-++++++.|+ +      ..+.+||+.......+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            56666777644    568899998887654433221 111222233677766664 2      46899999777665543


Q ss_pred             cC---CceEEEEEcCCCceEEEEcC---------CCeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC-
Q psy9936          89 VL---NKVTRMEFLPYHFLLATASE---------EGYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN-  153 (315)
Q Consensus        89 ~~---~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d-  153 (315)
                      ..   ..-.++.. .++.+++.|+.         -..+.+||+.+.+-...  +.........+.+  ++++++.|+.+ 
T Consensus       135 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  211 (306)
T 3ii7_A          135 SMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNG  211 (306)
T ss_dssp             CCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEET
T ss_pred             CCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCC
Confidence            22   11112222 25666776653         34588999987754332  1111111222222  56677777653 


Q ss_pred             ----CeEEEEcCCCCcc--eeEeecccccEEEEEECCCCCEEEEeeCC-----CcEEEEEccCC
Q psy9936         154 ----GTVTMWSPTVQKP--LASLLCHKAGIQSVAVNHTGTYMATSAGD-----SQLRIWDVRNL  206 (315)
Q Consensus       154 ----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~~~~d-----~~i~iwd~~~~  206 (315)
                          ..+.+||+.+.+-  +..+.........+.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus       212 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                3688999887642  2222211122223333  67777777754     35788888764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.57  E-value=0.016  Score=44.78  Aligned_cols=139  Identities=12%  Similarity=0.021  Sum_probs=83.9

Q ss_pred             CceeEEEEeecCcEEEEEeCCeEEEEeCCC-------CEEEEeecC--CceEEEEEcCCCceEEEEcCCCeEEEEEccCC
Q psy9936          52 EEVYDIKWLHLETMFAVAQKDWVYIYDNQG-------IELHCLKVL--NKVTRMEFLPYHFLLATASEEGYLSWLDTSIG  122 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~-------~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  122 (315)
                      ..+.+++|+|+|.+.++ .+|.++-.+..+       ..-..+...  ....++.|.|+|.+.++  .||.|+-++..+.
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            46789999999998888 888877777632       111222211  23578999999987777  5698887775331


Q ss_pred             eE-------EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc-----eeEee--cccccEEEEEECCCCCE
Q psy9936         123 KI-------VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP-----LASLL--CHKAGIQSVAVNHTGTY  188 (315)
Q Consensus       123 ~~-------~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~--~~~~~i~~~~~sp~g~~  188 (315)
                      ..       ...-...-..+..|.+.|+|.+.++.  |+.+.-....++..     ..+.-  ..-..-..+.|+|+|.+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            10       11111112357899999999877776  77754433322210     11111  12223445779999987


Q ss_pred             EEEeeCCCc
Q psy9936         189 MATSAGDSQ  197 (315)
Q Consensus       189 l~~~~~d~~  197 (315)
                      .++.  ++.
T Consensus       196 ~~v~--~g~  202 (236)
T 1tl2_A          196 FGVQ--GGK  202 (236)
T ss_dssp             EEEE--TTE
T ss_pred             EEEe--CCe
Confidence            7666  653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00044  Score=57.59  Aligned_cols=185  Identities=11%  Similarity=0.057  Sum_probs=104.2

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCC--CceeEEEEe---ecCcEEEEE--eCCeEEEEeCCCCEEE-EeecC----
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVM--EEVYDIKWL---HLETMFAVA--QKDWVYIYDNQGIELH-CLKVL----   90 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~--~~v~~~~~~---~~~~~l~~~--~~~~i~i~~~~~~~~~-~~~~~----   90 (315)
                      ..+++++.||.|+-+|..+|+....+...  .++....-.   .++..++..  .||.|+.++..+.... .+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            36788899999999999999998888744  232221100   133455453  5899999998544322 22211    


Q ss_pred             -CceEE---EEE-c----CCCceEEEEcCCCeEEEEEccCCeEEEEeccCC--CC-----eEEEEEc-----CCCCEEEE
Q psy9936          91 -NKVTR---MEF-L----PYHFLLATASEEGYLSWLDTSIGKIVSDFSAKK--GK-----LSVMTQN-----PYNACICL  149 (315)
Q Consensus        91 -~~v~~---~~~-~----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~-----v~~~~~~-----p~~~~l~~  149 (315)
                       .++..   ... .    ..+..+++|+.+|.+...|+.+|+.+..+....  +.     ..+....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence             22221   000 0    145678899999999999999999998876431  10     0111111     12356777


Q ss_pred             EcCCCeEEEEcCCCCcceeEee-----cccc--cE-EEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee
Q psy9936         150 GHRNGTVTMWSPTVQKPLASLL-----CHKA--GI-QSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN  211 (315)
Q Consensus       150 ~~~d~~i~i~d~~~~~~~~~~~-----~~~~--~i-~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~  211 (315)
                      +..+..+.+.+ ++++ +..+.     .+..  ++ .+-..+.|+.+ +.++.||.|.-+|..++ ..+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G-~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFR-IARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTC-CEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCC-cEEE
Confidence            77777788777 4554 32221     0000  00 00001234555 44678888888888777 5544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.55  E-value=0.018  Score=46.95  Aligned_cols=181  Identities=12%  Similarity=0.126  Sum_probs=97.1

Q ss_pred             CCCEEEEEcCC----CeEEEEEccCceEEEEecCCC-ceeEEEEeecCcEEEEEe-C-----CeEEEEeCCCCEEEEeec
Q psy9936          21 NGRHLLLGGKR----GHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGIELHCLKV   89 (315)
Q Consensus        21 ~~~~l~~~~~d----g~i~v~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~~~~~   89 (315)
                      ++..++.|+.+    ..+..||+.+.+....-.... .........++.+++.|+ +     ..+.+||........+..
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            34566666643    358899988877544322111 111112223666766664 2     468999997776655542


Q ss_pred             C---CceEEEEEcCCCceEEEEcCCC-----eEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC------
Q psy9936          90 L---NKVTRMEFLPYHFLLATASEEG-----YLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN------  153 (315)
Q Consensus        90 ~---~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d------  153 (315)
                      .   ..-.+++. .++.+++.|+.++     .+.+||+.+.+-...  +.........+.+  ++.+++.|+.+      
T Consensus        95 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           95 MRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred             CCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence            2   11112222 2567777776543     478899887754332  1111111222222  56677776542      


Q ss_pred             -CeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         154 -GTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       154 -~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                       ..+.+||+.+.+-..  .+.........+.+  ++.+++.|+.++     .+.+||+.+.
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             ccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence             358899988764322  22211111222222  577777877643     5889998764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.55  E-value=0.014  Score=48.10  Aligned_cols=176  Identities=9%  Similarity=0.099  Sum_probs=93.4

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEE-ecCC-CceeEEEEeecCcEEEEEe-----C-------CeEEEEeCCCCEEEEeec
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACE-MNVM-EEVYDIKWLHLETMFAVAQ-----K-------DWVYIYDNQGIELHCLKV   89 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~l~~~~-----~-------~~i~i~~~~~~~~~~~~~   89 (315)
                      +++.|+  ..+.+||..+++.... +... ..........++.+++.|+     +       ..+..||........+..
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            445565  5699999998886431 1111 2222223334666666554     1       137888987766655432


Q ss_pred             CC-c-e-EEEEEcCCCceEEEEcCC--------CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcC-C--
Q psy9936          90 LN-K-V-TRMEFLPYHFLLATASEE--------GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHR-N--  153 (315)
Q Consensus        90 ~~-~-v-~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~-d--  153 (315)
                      .. + . .+++. -++.+++.|+.+        ..+.+||+.+.+-...  +.........+.  .++++++.|+. +  
T Consensus        85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred             CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence            21 1 1 11222 256677777632        3589999987753322  111111122222  35667777775 2  


Q ss_pred             ---CeEEEEcCCCCcce--eEeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         154 ---GTVTMWSPTVQKPL--ASLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       154 ---~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                         ..+.+||+.+.+-.  ..+.........+.+  ++++++.|+.++     .+.+||+.+.
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence               46899998876322  222211111122222  667777777654     4788888764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.49  E-value=0.066  Score=49.90  Aligned_cols=221  Identities=12%  Similarity=0.078  Sum_probs=127.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~   87 (315)
                      +..|.++.-..+| +|-.|+.+| +..||-...+......  ....|.++.-..++.+.+.+ ++-+..||.........
T Consensus        21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~~~   97 (758)
T 3ott_A           21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGT-DNGILVYNYRADRYEQP   97 (758)
T ss_dssp             CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEE-TTEEEEEETTTTEECCC
T ss_pred             cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEECc
Confidence            6789999988888 455566777 6677743322111001  22457777766667655554 45588999865443221


Q ss_pred             e--cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936          88 K--VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS----AKKGKLSVMTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus        88 ~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      .  ....|.++.. .++ .|..++.+ -+..||..+++......    .....|.++...++|.+.+ |+.. -+..||.
T Consensus        98 ~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~  172 (758)
T 3ott_A           98 ETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIP  172 (758)
T ss_dssp             SCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEET
T ss_pred             ccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCcc
Confidence            1  1234666654 345 45556655 68889987665432211    1234588888888887555 4444 5778887


Q ss_pred             CCCcceeEeec------ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEec--cCCCceeEEEccCCe-EEE
Q psy9936         162 TVQKPLASLLC------HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR--TRTPINNLAFSQRGL-LAT  232 (315)
Q Consensus       162 ~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~-~~~  232 (315)
                      .+++. ..+..      ....|.++...+++..|..|+. +-+..+|..+. . +..+.  ....|.++...++|. +++
T Consensus       173 ~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~-~~~~~~l~~~~i~~i~~d~~g~lWig  248 (758)
T 3ott_A          173 SNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-Q-IKQTEAFHNNSIKSLALDGNGDLLAG  248 (758)
T ss_dssp             TTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-E-EEEEEEEEEEEEEEEEECTTCCEEEE
T ss_pred             CCCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-e-EEeccCCCCCeEEEEEEcCCCCEEEE
Confidence            76542 22211      1224788888777664444443 35888887764 3 22221  122488888888885 555


Q ss_pred             EcCCEEEecCC
Q psy9936         233 SRGNIVEFLKP  243 (315)
Q Consensus       233 ~~~~~i~~~~~  243 (315)
                      + ++-+..+++
T Consensus       249 T-~~Gl~~~~~  258 (758)
T 3ott_A          249 T-DNGLYVYHN  258 (758)
T ss_dssp             E-TTEEEEECC
T ss_pred             e-CCceeEEec
Confidence            5 445555554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.45  E-value=0.016  Score=47.72  Aligned_cols=185  Identities=12%  Similarity=0.083  Sum_probs=96.8

Q ss_pred             EcCCCCEEEEEcC-----C------CeEEEEEccCceEEEEecCCCc-eeEEEEeecCcEEEEEe----C-----CeEEE
Q psy9936          18 YTKNGRHLLLGGK-----R------GHVAAFDWVRKTLACEMNVMEE-VYDIKWLHLETMFAVAQ----K-----DWVYI   76 (315)
Q Consensus        18 ~s~~~~~l~~~~~-----d------g~i~v~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~-----~~i~i   76 (315)
                      ...++..++.|+.     .      ..+.+||..+.+....-....+ .......-++.+++.|+    +     ..+.+
T Consensus        42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEE
T ss_pred             EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEE
Confidence            3456777777773     1      1377889888775433222221 11111222666666654    1     46899


Q ss_pred             EeCCCCEEEEeecC--CceEEEEEcCCCceEEEEcC-C-----CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCE
Q psy9936          77 YDNQGIELHCLKVL--NKVTRMEFLPYHFLLATASE-E-----GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        77 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~  146 (315)
                      ||+.......+...  ......+...++++++.|+. +     ..+.+||+.+.+-...  +.........+.+  ++++
T Consensus       122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  199 (315)
T 4asc_A          122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRI  199 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred             ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEE
Confidence            99977665554322  11111122245667777765 2     3589999987653322  1111111222222  6677


Q ss_pred             EEEEcCCC-----eEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCCC--------------cEEEEEccC
Q psy9936         147 ICLGHRNG-----TVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGDS--------------QLRIWDVRN  205 (315)
Q Consensus       147 l~~~~~d~-----~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d~--------------~i~iwd~~~  205 (315)
                      ++.|+.++     .+.+||+.+.+-..  .+.........+.+  ++++++.|+.++              .+.+||+.+
T Consensus       200 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          200 IVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             EEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred             EEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence            77777644     58899988764322  11111111222222  567777776532              366777765


Q ss_pred             C
Q psy9936         206 L  206 (315)
Q Consensus       206 ~  206 (315)
                      .
T Consensus       278 ~  278 (315)
T 4asc_A          278 K  278 (315)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.44  E-value=0.0075  Score=49.56  Aligned_cols=180  Identities=11%  Similarity=0.058  Sum_probs=97.1

Q ss_pred             CCCEEEEEcC----C-----CeEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEe------CCeEEEEeCCCCEE
Q psy9936          21 NGRHLLLGGK----R-----GHVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQ------KDWVYIYDNQGIEL   84 (315)
Q Consensus        21 ~~~~l~~~~~----d-----g~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~~~i~i~~~~~~~~   84 (315)
                      ++..++.|+.    +     ..+.+||..+.+....-... .........-++++++.|+      -..+.+||+.....
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            5666666665    2     35888898887654432211 1111112223677777654      24688999977666


Q ss_pred             EEeecC----CceEEEEEcCCCceEEEEcCC-----CeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          85 HCLKVL----NKVTRMEFLPYHFLLATASEE-----GYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        85 ~~~~~~----~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                      ..+...    .....+.+  ++.+++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++.+++.|+.+
T Consensus       150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  225 (308)
T 1zgk_A          150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD  225 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence            554322    11122222  56777777654     4589999887654322  1111111222333  56777777654


Q ss_pred             -----CeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         154 -----GTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       154 -----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                           ..+.+||+.+.+-..  .+.........+.+  ++++++.|+.++     .+.+||+.+.
T Consensus       226 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          226 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence                 468999988764321  12111111122222  567777777543     4778887764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.44  E-value=0.1  Score=50.95  Aligned_cols=205  Identities=11%  Similarity=0.111  Sum_probs=118.5

Q ss_pred             eEEEEEccCceEEEEec--CCCceeEEEEee---c-CcEEEEEe-----------CCeEEEEeCCCCEEEEee---cCCc
Q psy9936          33 HVAAFDWVRKTLACEMN--VMEEVYDIKWLH---L-ETMFAVAQ-----------KDWVYIYDNQGIELHCLK---VLNK   92 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~---~-~~~l~~~~-----------~~~i~i~~~~~~~~~~~~---~~~~   92 (315)
                      .|++.|..+.+.+..+.  ..+.+.+++...   + ..++++|.           .|.|++|++.+..+..+.   ..++
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            46677776666655544  445566655332   2 46777663           267999998655554432   3478


Q ss_pred             eEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc--CCCCcceeE
Q psy9936          93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS-DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS--PTVQKPLAS  169 (315)
Q Consensus        93 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d--~~~~~~~~~  169 (315)
                      +++++-- +|.+++..  ..++++|++...+.+. ...... .+..+.....++++++|..-..|.++.  ...++ +..
T Consensus       888 v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~  962 (1158)
T 3ei3_A          888 VYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN-FEE  962 (1158)
T ss_dssp             EEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE-EEE
T ss_pred             CEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe-EEE
Confidence            8887644 35444433  3689999997654333 111121 133333333577888988777776654  33332 223


Q ss_pred             ee--cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCC-------CC--eeEeccCCCceeEE---EccCC-------
Q psy9936         170 LL--CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE-------GP--LNTFRTRTPINNLA---FSQRG-------  228 (315)
Q Consensus       170 ~~--~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~-------~~--~~~~~~~~~v~~~~---~s~~g-------  228 (315)
                      +.  .+..+++++.+-.++ .++.+..+|.+.+.......       +.  ...+..+..|+++.   +.+.+       
T Consensus       963 ~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~ 1041 (1158)
T 3ei3_A          963 IARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTP 1041 (1158)
T ss_dssp             EEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------C
T ss_pred             EEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcccccc
Confidence            32  345688888886554 67778999999998765420       11  12233344566664   22221       


Q ss_pred             ----eEEEEcCCEEEecCC
Q psy9936         229 ----LLATSRGNIVEFLKP  243 (315)
Q Consensus       229 ----~~~~~~~~~i~~~~~  243 (315)
                          .+.++.+|.|-..-|
T Consensus      1042 ~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1042 TQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             EEEEEEEEETTSCEEEEEE
T ss_pred             ccceEEEEecCCEEEEEEE
Confidence                466777888875444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.43  E-value=0.0028  Score=48.91  Aligned_cols=140  Identities=9%  Similarity=0.003  Sum_probs=83.5

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE------EEEecC--CCceeEEEEeecCcEEEEEeCCeEEEEeC--C
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL------ACEMNV--MEEVYDIKWLHLETMFAVAQKDWVYIYDN--Q   80 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~------~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~i~~~--~   80 (315)
                      ..+..++|+|+|.+.++  .+|.++-.+..+...      ...+..  -....++.|.|+|.+.++ +||.|+-++.  +
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            35679999999987776  677776666544211      111210  011477889999999988 8899988876  2


Q ss_pred             CCEE-----EEeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe------EEEEec-cCCCCeEEEEEcCCCCE
Q psy9936          81 GIEL-----HCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK------IVSDFS-AKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        81 ~~~~-----~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~-~~~~~v~~~~~~p~~~~  146 (315)
                      +..-     ..+..  -..+..+.+.|+|.+.++.  |+.++-....++.      ....+. .......-+.|.|++.+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            2110     11222  1578999999999877666  7775433222111      011111 22223455678999887


Q ss_pred             EEEEcCCCeEE
Q psy9936         147 ICLGHRNGTVT  157 (315)
Q Consensus       147 l~~~~~d~~i~  157 (315)
                      +++.  ++.+.
T Consensus       196 ~~v~--~g~~Y  204 (236)
T 1tl2_A          196 FGVQ--GGKFY  204 (236)
T ss_dssp             EEEE--TTEEE
T ss_pred             EEEe--CCeEE
Confidence            7666  66443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.39  E-value=0.0074  Score=59.00  Aligned_cols=220  Identities=10%  Similarity=0.112  Sum_probs=134.4

Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC--EEEEeec----
Q psy9936          16 MNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI--ELHCLKV----   89 (315)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~--~~~~~~~----   89 (315)
                      .-.+|..+.||.-. ..++.|+|+++...+..+...++|.-=.|.. .+.|+..++..|+-|++.+.  +...+..    
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhc
Confidence            34678777777654 6789999999988888887777777667764 45677777889999999652  2222221    


Q ss_pred             -CCceEEEEEcCCCceEEEEc-------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEc--CC-CCEEEEEcC---CCe
Q psy9936          90 -LNKVTRMEFLPYHFLLATAS-------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQN--PY-NACICLGHR---NGT  155 (315)
Q Consensus        90 -~~~v~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--p~-~~~l~~~~~---d~~  155 (315)
                       ...|.....+++.++++..+       ..|.+.+|.... +..+.+.+|.+....+...  +. ...+..+..   .+.
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k  227 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence             24566677788888776543       357889998764 3445567776655444332  11 123333222   268


Q ss_pred             EEEEcCCCC---ccee------Eeec---ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeE
Q psy9936         156 VTMWSPTVQ---KPLA------SLLC---HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNL  222 (315)
Q Consensus       156 i~i~d~~~~---~~~~------~~~~---~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~  222 (315)
                      +.|.++...   .+..      .+-.   ...-...+..|+....+..-+.-|.|+++|+.++ .++..-+... +|...
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~-~~i~~~ris~~~iF~~  306 (1630)
T 1xi4_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVT  306 (1630)
T ss_pred             EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc-hhhhhccccCCceEEe
Confidence            888887542   1110      0101   1122346777777777888889999999999998 7666544333 33222


Q ss_pred             EEc-c-CCeEEEEcCCEEE
Q psy9936         223 AFS-Q-RGLLATSRGNIVE  239 (315)
Q Consensus       223 ~~s-~-~g~~~~~~~~~i~  239 (315)
                      +-+ + .|.+.+...|.|-
T Consensus       307 ~~~~~~~g~~~vnr~G~vl  325 (1630)
T 1xi4_A          307 APHEATAGIIGVNRKGQVL  325 (1630)
T ss_pred             ccCCCCCceEEEcCCceEE
Confidence            222 2 2344445555544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.38  E-value=0.031  Score=45.99  Aligned_cols=183  Identities=13%  Similarity=0.135  Sum_probs=95.3

Q ss_pred             EcCCCCEEEEEcC----CC-------eEEEEEccCceEEEEecCCCc--eeEEEEeecCcEEEEEe-C-------CeEEE
Q psy9936          18 YTKNGRHLLLGGK----RG-------HVAAFDWVRKTLACEMNVMEE--VYDIKWLHLETMFAVAQ-K-------DWVYI   76 (315)
Q Consensus        18 ~s~~~~~l~~~~~----dg-------~i~v~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-~-------~~i~i   76 (315)
                      ...++..++.|+.    ++       .+.+||..+.+....-....+  -.+++ .-++++++.|+ +       ..+.+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLG-EVDDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEE-EETTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceE-EECCEEEEEcCccCCCCcccceEEE
Confidence            3456777777773    11       277888887776543221111  11222 22566666654 2       35888


Q ss_pred             EeCCCCEEEEeecC-Cce--EEEEEcCCCceEEEEcC------CCeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCC
Q psy9936          77 YDNQGIELHCLKVL-NKV--TRMEFLPYHFLLATASE------EGYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        77 ~~~~~~~~~~~~~~-~~v--~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~  145 (315)
                      ||+.......+... .+.  .+++ ..++.+++.|+.      -..+.+||+.+.+-...  +.........+.+  ++.
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  208 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK  208 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred             EeCCCCCEeECCCCCCcccccEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE
Confidence            99977766554322 111  1122 245677777764      23589999987754332  1111111222222  567


Q ss_pred             EEEEEcCC-----CeEEEEcCCCCcce--eEeecccccEEEEEECCCCCEEEEeeCC--------------CcEEEEEcc
Q psy9936         146 CICLGHRN-----GTVTMWSPTVQKPL--ASLLCHKAGIQSVAVNHTGTYMATSAGD--------------SQLRIWDVR  204 (315)
Q Consensus       146 ~l~~~~~d-----~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~~d--------------~~i~iwd~~  204 (315)
                      +++.|+.+     ..+.+||+.+.+-.  ..+.........+.  .++.+++.|+.+              ..+.+||+.
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  286 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD  286 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred             EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence            77777643     35788998876422  12221111112222  356677777653              246677776


Q ss_pred             CC
Q psy9936         205 NL  206 (315)
Q Consensus       205 ~~  206 (315)
                      +.
T Consensus       287 ~~  288 (318)
T 2woz_A          287 KK  288 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.37  E-value=0.035  Score=48.38  Aligned_cols=100  Identities=6%  Similarity=0.024  Sum_probs=60.8

Q ss_pred             CceeEEEEeecCcEEEEEeCC-eEEEEeCCCCEEEEee----------cCCceEEEEEcCC---CceEEEEcC-------
Q psy9936          52 EEVYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLK----------VLNKVTRMEFLPY---HFLLATASE-------  110 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~----------~~~~v~~~~~~~~---~~~l~~~~~-------  110 (315)
                      .....++|.|+|+++++...+ .|++++..+.....+.          .......|+|+|+   +..|+.+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            456799999999988888765 7988886432222221          1245679999995   444444432       


Q ss_pred             ------CCeEEEEEccCC-------eEEE-Eecc-CCCCeEEEEEcCCCCEEEEEc
Q psy9936         111 ------EGYLSWLDTSIG-------KIVS-DFSA-KKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus       111 ------d~~i~~~d~~~~-------~~~~-~~~~-~~~~v~~~~~~p~~~~l~~~~  151 (315)
                            ...|.-|++..+       +.+. .+.. .......|+|.|||.++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  235666665432       1111 1221 123468899999998766644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.23  E-value=0.048  Score=45.54  Aligned_cols=145  Identities=14%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE--EEEec----cCCCCeEEEEEcCC---CCEEEEE---cCCCeEE
Q psy9936          90 LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI--VSDFS----AKKGKLSVMTQNPY---NACICLG---HRNGTVT  157 (315)
Q Consensus        90 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~----~~~~~v~~~~~~p~---~~~l~~~---~~d~~i~  157 (315)
                      ....+.++|.|+|.++++--..|.|++++...++.  +..+.    ........|+++|+   +..|+..   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            46778999999998777766589999998665543  22221    23456889999995   3344332   2345666


Q ss_pred             EEcCCCCc--------c--e-eEeec-ccccEEEEEECCCCCEEEEeeC-------------CCcEEEEEccCC---CCC
Q psy9936         158 MWSPTVQK--------P--L-ASLLC-HKAGIQSVAVNHTGTYMATSAG-------------DSQLRIWDVRNL---EGP  209 (315)
Q Consensus       158 i~d~~~~~--------~--~-~~~~~-~~~~i~~~~~sp~g~~l~~~~~-------------d~~i~iwd~~~~---~~~  209 (315)
                      -|.+..+.        .  + ..+.. .......|.|.|||.++++.+.             .|.|.-.+....   ..+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            66554311        1  1 11211 1112357999999987766442             234444444321   011


Q ss_pred             ---eeEe-ccCCCceeEEEccCCeEEEEc
Q psy9936         210 ---LNTF-RTRTPINNLAFSQRGLLATSR  234 (315)
Q Consensus       210 ---~~~~-~~~~~v~~~~~s~~g~~~~~~  234 (315)
                         ...+ ..+.....++|+|+|.+.++.
T Consensus       191 f~~~~i~a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          191 FPGSPVYSYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             STTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred             CCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence               1122 234467899999998655543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.20  E-value=0.19  Score=49.11  Aligned_cols=127  Identities=12%  Similarity=0.016  Sum_probs=77.8

Q ss_pred             eEEEEEccCceEEEEecCC--CceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEE---eecCCceEEEEEcCC------
Q psy9936          33 HVAAFDWVRKTLACEMNVM--EEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHC---LKVLNKVTRMEFLPY------  101 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~---~~~~~~v~~~~~~~~------  101 (315)
                      .|++.+......+..+...  ..|...+.+  +..++.+.++.+.++.++...+..   ......|.|+++.|.      
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~  570 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL  570 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence            3666665554455555433  245555533  345555567788888774333332   223478999999864      


Q ss_pred             CceEEEEcC-CCeEEEEEccCCeEEEEeccC-CCCeEEEEEc--CCCCEEEEEcCCCeEEEEcC
Q psy9936         102 HFLLATASE-EGYLSWLDTSIGKIVSDFSAK-KGKLSVMTQN--PYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus       102 ~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~--p~~~~l~~~~~d~~i~i~d~  161 (315)
                      +.++++|.. |++++++++.+.+.+...... ...+.++.+.  ....+|..|-.||.+.-+.+
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            368999987 999999999877666543321 1234444332  23357888889998765544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.18  E-value=0.07  Score=43.86  Aligned_cols=177  Identities=12%  Similarity=0.121  Sum_probs=92.0

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEE-ecC-CCceeEEEEeecCcEEEEEeC-----C-------eEEEEeCCCCEEEEeec
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACE-MNV-MEEVYDIKWLHLETMFAVAQK-----D-------WVYIYDNQGIELHCLKV   89 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~-----~-------~i~i~~~~~~~~~~~~~   89 (315)
                      .++.|+.  .+..||..+.+.... ... ...........++.+++.|+.     +       .+..||........+..
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4455543  488999988876542 111 122222333446777776651     1       27788987766655432


Q ss_pred             C---CceEEEEEcCCCceEEEEcCC-------CeEEEEEccCCeEEEEeccCCCCe-EEEEEcCCCCEEEEEcC------
Q psy9936          90 L---NKVTRMEFLPYHFLLATASEE-------GYLSWLDTSIGKIVSDFSAKKGKL-SVMTQNPYNACICLGHR------  152 (315)
Q Consensus        90 ~---~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~p~~~~l~~~~~------  152 (315)
                      .   ..-.+++. .++.+++.|+.+       ..+.+||+.+.+-...-....... .+++. .++.+++.|+.      
T Consensus        96 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           96 LPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             BSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCB
T ss_pred             CCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCc
Confidence            2   11112222 256677777653       248889988765443211111110 11222 46677777764      


Q ss_pred             CCeEEEEcCCCCccee--EeecccccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         153 NGTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                      -..+.+||+.+.+-..  .+.........+.  -++.+++.|+.++     .+.+||+.+.
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            2358999998764322  1111111112222  2567777776432     4778888764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.18  E-value=0.015  Score=48.92  Aligned_cols=139  Identities=9%  Similarity=-0.037  Sum_probs=80.3

Q ss_pred             CceeEEEEeecCc-EEEEEeCCeEEEEeCCCCEEEEee--------cCCceEEEEEcCC---CceEEEEc-C-------C
Q psy9936          52 EEVYDIKWLHLET-MFAVAQKDWVYIYDNQGIELHCLK--------VLNKVTRMEFLPY---HFLLATAS-E-------E  111 (315)
Q Consensus        52 ~~v~~~~~~~~~~-~l~~~~~~~i~i~~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~l~~~~-~-------d  111 (315)
                      .....++|.|+|+ ++++...+.|++++.++.....+.        .......++++|+   +..|+.+. .       .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3568899999999 887777899999987543211111        1245689999996   44444432 2       2


Q ss_pred             CeEEEEEccCC--e--EEEE-ecc------CCCCeEEEEEcCCCCEEEEEcC-------------CCeEEEEcCCCCc--
Q psy9936         112 GYLSWLDTSIG--K--IVSD-FSA------KKGKLSVMTQNPYNACICLGHR-------------NGTVTMWSPTVQK--  165 (315)
Q Consensus       112 ~~i~~~d~~~~--~--~~~~-~~~------~~~~v~~~~~~p~~~~l~~~~~-------------d~~i~i~d~~~~~--  165 (315)
                      ..|..|++...  .  .... +..      .......++|.|||.++++.+.             .|.|.-++....-  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35766776432  1  1111 111      1112356999999976555433             2467777765320  


Q ss_pred             ----------ceeEe-ecccccEEEEEECC-CCCEEEE
Q psy9936         166 ----------PLASL-LCHKAGIQSVAVNH-TGTYMAT  191 (315)
Q Consensus       166 ----------~~~~~-~~~~~~i~~~~~sp-~g~~l~~  191 (315)
                                ....+ .++. ....++|+| +|.++++
T Consensus       178 ~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                      11112 2333 357899999 6665554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.18  E-value=0.12  Score=47.69  Aligned_cols=186  Identities=10%  Similarity=0.076  Sum_probs=105.9

Q ss_pred             CCCCEEEEEcCC----CeEEEEEccCceEEEEe-c------CCC-ceeEEEEee-cCcEEEEEe-C------CeEEEEeC
Q psy9936          20 KNGRHLLLGGKR----GHVAAFDWVRKTLACEM-N------VME-EVYDIKWLH-LETMFAVAQ-K------DWVYIYDN   79 (315)
Q Consensus        20 ~~~~~l~~~~~d----g~i~v~~~~~~~~~~~~-~------~~~-~v~~~~~~~-~~~~l~~~~-~------~~i~i~~~   79 (315)
                      .++..++.|+.+    ..+.+||..+++....- .      ... .-.+++..+ ++++++.|+ +      +.+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777643    46888998887655433 2      111 123333333 777777764 1      36889999


Q ss_pred             CCCEEEEeecC---CceEEEEEcCCCceEEEEcCCC--eEEEEEccCCeEEEEe-----ccCCCCeEEEEEcCC-CCEEE
Q psy9936          80 QGIELHCLKVL---NKVTRMEFLPYHFLLATASEEG--YLSWLDTSIGKIVSDF-----SAKKGKLSVMTQNPY-NACIC  148 (315)
Q Consensus        80 ~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~p~-~~~l~  148 (315)
                      .......+...   ..-.+++...++.+++.|+.++  .+.+||+.+.+-...-     ........++.+..+ +.+++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            77666554322   1122333334778888887654  6999999877543321     111122233555655 66777


Q ss_pred             EEcC--C-----CeEEEEcCCCCcc-----eeEeec---c-cccEEEEEECCCCCEEEEeeCC--------CcEEEEEcc
Q psy9936         149 LGHR--N-----GTVTMWSPTVQKP-----LASLLC---H-KAGIQSVAVNHTGTYMATSAGD--------SQLRIWDVR  204 (315)
Q Consensus       149 ~~~~--d-----~~i~i~d~~~~~~-----~~~~~~---~-~~~i~~~~~sp~g~~l~~~~~d--------~~i~iwd~~  204 (315)
                      .|+.  +     ..+.+||+.+.+.     -..+..   . .... ++....++.+++.|+.+        ..+.+||+.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            7765  2     4689999887762     111211   1 1111 22333337777777743        458899988


Q ss_pred             CC
Q psy9936         205 NL  206 (315)
Q Consensus       205 ~~  206 (315)
                      +.
T Consensus       635 t~  636 (695)
T 2zwa_A          635 SE  636 (695)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.13  E-value=0.039  Score=48.10  Aligned_cols=104  Identities=14%  Similarity=0.151  Sum_probs=62.2

Q ss_pred             CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE--EEEecc------CCCCeEEEEEcCC---CCEEEEEcC------
Q psy9936          90 LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI--VSDFSA------KKGKLSVMTQNPY---NACICLGHR------  152 (315)
Q Consensus        90 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~------~~~~v~~~~~~p~---~~~l~~~~~------  152 (315)
                      ......|+|.|+|.++++-...+.|.+++..++..  +..+..      ....+..|+|+|+   +..|+++..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            45678999999998777665545788888655543  222321      2355789999995   444444331      


Q ss_pred             -------CCeEEEEcCCCC-------ccee-Eeec-ccccEEEEEECCCCCEEEEee
Q psy9936         153 -------NGTVTMWSPTVQ-------KPLA-SLLC-HKAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       153 -------d~~i~i~d~~~~-------~~~~-~~~~-~~~~i~~~~~sp~g~~l~~~~  193 (315)
                             ...|.-|++..+       +.+. .+.. .......|+|.|||.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   234555554322       1111 1221 112468899999998666544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.02  E-value=0.04  Score=46.16  Aligned_cols=188  Identities=11%  Similarity=0.037  Sum_probs=95.4

Q ss_pred             CCCEEEEEcC-C---------CeEEEEEccCceEEEEecC--CCceeEEEEeecCcEEEEEe-C----------------
Q psy9936          21 NGRHLLLGGK-R---------GHVAAFDWVRKTLACEMNV--MEEVYDIKWLHLETMFAVAQ-K----------------   71 (315)
Q Consensus        21 ~~~~l~~~~~-d---------g~i~v~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-~----------------   71 (315)
                      ++..++.|+. +         ..+.+||..+.+....-..  .......+...++++++.|+ +                
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  144 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK  144 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence            5666666665 1         3588899888775543321  12222222336777777775 2                


Q ss_pred             -----------------------CeEEEEeCCCCEEEEeecC---Cce-EEEEEcCCCceEEEEcC------CCeEEEEE
Q psy9936          72 -----------------------DWVYIYDNQGIELHCLKVL---NKV-TRMEFLPYHFLLATASE------EGYLSWLD  118 (315)
Q Consensus        72 -----------------------~~i~i~~~~~~~~~~~~~~---~~v-~~~~~~~~~~~l~~~~~------d~~i~~~d  118 (315)
                                             ..+.+||+.......+...   ... .+++. .++.+++.|+.      ...+..||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d  223 (357)
T 2uvk_A          145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELD  223 (357)
T ss_dssp             CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEE
T ss_pred             cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEE
Confidence                                   4799999977665554322   111 22322 25666666653      23577788


Q ss_pred             c--cCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEcCC----------------------CeEEEEcCCCCcc--eeEe
Q psy9936         119 T--SIGKIVS--DFSAKKGKLSVMTQNPYNACICLGHRN----------------------GTVTMWSPTVQKP--LASL  170 (315)
Q Consensus       119 ~--~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~~~~~d----------------------~~i~i~d~~~~~~--~~~~  170 (315)
                      +  .+.+-..  .+..........+...++.+++.|+.+                      ..+.+||+.+.+.  +..+
T Consensus       224 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  303 (357)
T 2uvk_A          224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL  303 (357)
T ss_dssp             CC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred             ecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence            7  4443222  111111111111222356777777632                      2578899887643  2222


Q ss_pred             ecccccEEEEEECCCCCEEEEeeCCC------cEEEEEccCCCCCeeE
Q psy9936         171 LCHKAGIQSVAVNHTGTYMATSAGDS------QLRIWDVRNLEGPLNT  212 (315)
Q Consensus       171 ~~~~~~i~~~~~sp~g~~l~~~~~d~------~i~iwd~~~~~~~~~~  212 (315)
                      ......-.+  ...++++++.|+.++      .+.++++++. +.+..
T Consensus       304 p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~-~~~~~  348 (357)
T 2uvk_A          304 SQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDN-KVTVQ  348 (357)
T ss_dssp             SSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CC-SCEEE
T ss_pred             CCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc-EeEee
Confidence            222222122  234677888887553      3666688776 54443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.83  E-value=0.08  Score=44.25  Aligned_cols=140  Identities=9%  Similarity=-0.065  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCC-CeEEEEEccC--ceEEEEecCC--CceeEEEEeecCcEEEEEeC-----------CeEEEEeCCCCEE
Q psy9936          21 NGRHLLLGGKR-GHVAAFDWVR--KTLACEMNVM--EEVYDIKWLHLETMFAVAQK-----------DWVYIYDNQGIEL   84 (315)
Q Consensus        21 ~~~~l~~~~~d-g~i~v~~~~~--~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-----------~~i~i~~~~~~~~   84 (315)
                      ++..++.|+.+ ..+.+||..+  .+....-...  ......+..-++++++.|+.           +.+.+||+.....
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            56666776643 4688899864  4433222212  22222222235666665532           3689999977766


Q ss_pred             EEeecCC---ceEEEEEcCCCceEEEEcCC---------------------------------------CeEEEEEccCC
Q psy9936          85 HCLKVLN---KVTRMEFLPYHFLLATASEE---------------------------------------GYLSWLDTSIG  122 (315)
Q Consensus        85 ~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------------------------------------~~i~~~d~~~~  122 (315)
                      ..+....   .....+...++++++.|+.+                                       ..+.+||+.+.
T Consensus        99 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~  178 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ  178 (357)
T ss_dssp             EECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT
T ss_pred             EECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC
Confidence            5543221   11111222567788888754                                       57899999877


Q ss_pred             eEEEE--eccCCCCeEEEEEcCCCCEEEEEcC------CCeEEEEcC
Q psy9936         123 KIVSD--FSAKKGKLSVMTQNPYNACICLGHR------NGTVTMWSP  161 (315)
Q Consensus       123 ~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~------d~~i~i~d~  161 (315)
                      +-...  +......-.+++. -++.+++.|+.      ...+.+||+
T Consensus       179 ~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          179 QWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             EEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             cEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence            53332  2211111022322 25666777664      235777876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.75  E-value=0.27  Score=43.48  Aligned_cols=213  Identities=11%  Similarity=0.062  Sum_probs=121.6

Q ss_pred             CCCEEEEEc-CCCeEEEEEccCceEEEEec--CCCceeEEEEe--ecCcEEEEEeC--------Ce-E--------EEE-
Q psy9936          21 NGRHLLLGG-KRGHVAAFDWVRKTLACEMN--VMEEVYDIKWL--HLETMFAVAQK--------DW-V--------YIY-   77 (315)
Q Consensus        21 ~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~--~~~~~l~~~~~--------~~-i--------~i~-   77 (315)
                      ||++|..-. .+..|-..+++..++-..+.  ....+..++|-  |+..++.+++.        |. +        .+| 
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            677887765 45678888888777655544  55678888886  67667766542        22 1        111 


Q ss_pred             --eCCCCEE-EEeecCCceEEEEEcCCCceEEEEcCCC---------------eEEEEEccC-------Ce-------EE
Q psy9936          78 --DNQGIEL-HCLKVLNKVTRMEFLPYHFLLATASEEG---------------YLSWLDTSI-------GK-------IV  125 (315)
Q Consensus        78 --~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~~~d~~~-------~~-------~~  125 (315)
                        |.++.++ .++.-.+..-.+...+++.+.++.+.+.               -+.++|...       |+       -+
T Consensus       221 ~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv  300 (638)
T 3sbq_A          221 AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT  300 (638)
T ss_dssp             EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence              1111111 1111122333455566777777665432               255555431       10       01


Q ss_pred             EEecc---------------CCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCCC------cc-------eeEeeccccc
Q psy9936         126 SDFSA---------------KKGKLSVMTQNPYNACICLGH-RNGTVTMWSPTVQ------KP-------LASLLCHKAG  176 (315)
Q Consensus       126 ~~~~~---------------~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~~------~~-------~~~~~~~~~~  176 (315)
                      ..+.+               -......+.++|||++++.++ .+.++.++|++.-      +.       +.+.. -...
T Consensus       301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlG  379 (638)
T 3sbq_A          301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLG  379 (638)
T ss_dssp             CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSC
T ss_pred             eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCc
Confidence            11211               112345678899999887765 4779999998731      11       22222 2345


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEccCC---------CCCeeEeccCCCceeEEE------ccCCeEEEEc
Q psy9936         177 IQSVAVNHTGTYMATSAGDSQLRIWDVRNL---------EGPLNTFRTRTPINNLAF------SQRGLLATSR  234 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~------s~~g~~~~~~  234 (315)
                      ....+|.++|.-..+.-.|..|.-|++...         ...+..+..|..+-.+.-      .|||.++++.
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            678899999954445558999999999752         134455566665544443      5677766664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.74  E-value=0.23  Score=42.54  Aligned_cols=216  Identities=10%  Similarity=0.140  Sum_probs=135.2

Q ss_pred             CEEEEE---cCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC-EEEEeecCCceEEEEE
Q psy9936          23 RHLLLG---GKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI-ELHCLKVLNKVTRMEF   98 (315)
Q Consensus        23 ~~l~~~---~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~-~~~~~~~~~~v~~~~~   98 (315)
                      +++.+-   +....|.|.|+.++........  ..-+.-.+|..+.+|.-...++.++|++.+ .+.......+|..-.|
T Consensus        36 kyicVrE~~~~~~~vvIiDl~~~~~~~rrpi--~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkW  113 (494)
T 1bpo_A           36 KFICIREKVGEQAQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKW  113 (494)
T ss_dssp             TEEEEEECCTTCCEEEEEETTSTTSCEEEEC--CCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEE
T ss_pred             ceEEEEecCCCCCeEEEEECCCCCcceeccc--ccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEe
Confidence            455543   2234788888877554322221  123445688888998888899999999664 4455555678888888


Q ss_pred             cCCCceEEEEcCCCeEEEEEccC-CeEEEEeccCC----CCeEEEEEcCCCCEEEEEc-------CCCeEEEEcCCCCcc
Q psy9936          99 LPYHFLLATASEEGYLSWLDTSI-GKIVSDFSAKK----GKLSVMTQNPYNACICLGH-------RNGTVTMWSPTVQKP  166 (315)
Q Consensus        99 ~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~----~~v~~~~~~p~~~~l~~~~-------~d~~i~i~d~~~~~~  166 (315)
                      -.+. .|+..+ +..|+.|++.. ..++..+..|.    ..|..-..+++.++++..|       ..|.+.+|..+.+ .
T Consensus       114 is~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~  190 (494)
T 1bpo_A          114 ISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-V  190 (494)
T ss_dssp             EETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-C
T ss_pred             cCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-c
Confidence            6554 444444 45899999963 35666666553    3477778899999877543       2478899998854 4


Q ss_pred             eeEeecccccEEEEEECCC---CCEEEEeeCC---CcEEEEEccCC---CCCee--E---eccCC----CceeEEEccC-
Q psy9936         167 LASLLCHKAGIQSVAVNHT---GTYMATSAGD---SQLRIWDVRNL---EGPLN--T---FRTRT----PINNLAFSQR-  227 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~---g~~l~~~~~d---~~i~iwd~~~~---~~~~~--~---~~~~~----~v~~~~~s~~-  227 (315)
                      -+.+.+|.+.-..+.+.-+   ..+++.+...   +.++|.++...   ..+..  .   +..+.    -..++..|+. 
T Consensus       191 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky  270 (494)
T 1bpo_A          191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH  270 (494)
T ss_dssp             EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT
T ss_pred             cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC
Confidence            5667788765544444322   1245554432   67999998532   01111  1   11111    1356677764 


Q ss_pred             C-eEEEEcCCEEEecCC
Q psy9936         228 G-LLATSRGNIVEFLKP  243 (315)
Q Consensus       228 g-~~~~~~~~~i~~~~~  243 (315)
                      | .|+.+.-|.+..++.
T Consensus       271 gviyviTK~G~i~lyDl  287 (494)
T 1bpo_A          271 DVVFLITKYGYIHLYDL  287 (494)
T ss_dssp             TEEEEEETTSEEEEEET
T ss_pred             CEEEEEecCceEEEEec
Confidence            4 588899999998887

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.38  E-value=0.24  Score=48.90  Aligned_cols=207  Identities=10%  Similarity=0.112  Sum_probs=123.2

Q ss_pred             CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC-CEEEEeecCCceEEEEEcCCCceEEEEcC
Q psy9936          32 GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG-IELHCLKVLNKVTRMEFLPYHFLLATASE  110 (315)
Q Consensus        32 g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  110 (315)
                      .+|.|.|+.++......  +-..-+.-.+|..+++|.-...++.|+|++. ..+.......+|..-.|-... .|+..+ 
T Consensus        48 ~~vvIidl~~~~~~~rr--pi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~-~l~lVT-  123 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-  123 (1630)
T ss_pred             ceEEEEECCCCCCcccc--cccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCC-eeEEEc-
Confidence            47888888776543221  1122334457888888888888999999954 334444455778888886554 344443 


Q ss_pred             CCeEEEEEccC-CeEEEEeccC----CCCeEEEEEcCCCCEEEEEc-------CCCeEEEEcCCCCcceeEeecccccEE
Q psy9936         111 EGYLSWLDTSI-GKIVSDFSAK----KGKLSVMTQNPYNACICLGH-------RNGTVTMWSPTVQKPLASLLCHKAGIQ  178 (315)
Q Consensus       111 d~~i~~~d~~~-~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~i~  178 (315)
                      +..|+.|++.. ..++..|..|    ...|..-..+++.++++..|       ..|.+.+|..+.+ .-+.+.||.+.-.
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~  202 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence            45799999963 3455555544    34577777889999776543       3578999988754 3345566665443


Q ss_pred             EEEEC--C-CCCEEEEeeC---CCcEEEEEccCC--CC-Ce-----eEeccCC----CceeEEEccC-C-eEEEEcCCEE
Q psy9936         179 SVAVN--H-TGTYMATSAG---DSQLRIWDVRNL--EG-PL-----NTFRTRT----PINNLAFSQR-G-LLATSRGNIV  238 (315)
Q Consensus       179 ~~~~s--p-~g~~l~~~~~---d~~i~iwd~~~~--~~-~~-----~~~~~~~----~v~~~~~s~~-g-~~~~~~~~~i  238 (315)
                      .+...  + ....++.+..   .+.++|.++...  +. +.     ..+..+.    -..++..|+. | .++++.-|.+
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~  282 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence            33332  1 1223443322   257888888432  01 11     1111111    1345566654 4 5788888988


Q ss_pred             EecCC
Q psy9936         239 EFLKP  243 (315)
Q Consensus       239 ~~~~~  243 (315)
                      ..++.
T Consensus       283 ~~~d~  287 (1630)
T 1xi4_A          283 HLYDL  287 (1630)
T ss_pred             EEEec
Confidence            87777

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.11  E-value=0.27  Score=45.33  Aligned_cols=145  Identities=10%  Similarity=0.085  Sum_probs=83.9

Q ss_pred             CCCEEEEEcCC------CeEEEEEccCceEEEEecCCC--ceeEEEEeecCcEEEEEe-C--CeEEEEeCCCCEEEEeec
Q psy9936          21 NGRHLLLGGKR------GHVAAFDWVRKTLACEMNVME--EVYDIKWLHLETMFAVAQ-K--DWVYIYDNQGIELHCLKV   89 (315)
Q Consensus        21 ~~~~l~~~~~d------g~i~v~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-~--~~i~i~~~~~~~~~~~~~   89 (315)
                      ++..++.|+.+      ..+.+||..+.+....-....  .-.+++...++++++.|+ +  +.+.+||+.......+..
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            66777777643      357889988876544322111  122233324777777765 2  279999998777666542


Q ss_pred             C-------CceEEEEEcCC-CceEEEEcC--C-----CeEEEEEccCCe------EEEE--ec-cCCCCeEEEEEcCCCC
Q psy9936          90 L-------NKVTRMEFLPY-HFLLATASE--E-----GYLSWLDTSIGK------IVSD--FS-AKKGKLSVMTQNPYNA  145 (315)
Q Consensus        90 ~-------~~v~~~~~~~~-~~~l~~~~~--d-----~~i~~~d~~~~~------~~~~--~~-~~~~~v~~~~~~p~~~  145 (315)
                      .       ....++.+..+ +.+++.|+.  +     ..+.+||+.+..      -...  .. ....... ++...++.
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~  609 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRK  609 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCE
Confidence            1       22233555655 667777765  2     358899998776      2211  11 1111122 23333367


Q ss_pred             EEEEEcC--------CCeEEEEcCCCCcc
Q psy9936         146 CICLGHR--------NGTVTMWSPTVQKP  166 (315)
Q Consensus       146 ~l~~~~~--------d~~i~i~d~~~~~~  166 (315)
                      +++.|+.        ...+.+||+.+.+.
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            7777774        34689999987653

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.23  E-value=0.95  Score=36.46  Aligned_cols=217  Identities=13%  Similarity=0.092  Sum_probs=112.4

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccC-ceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC--CCEEEEee
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-KTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ--GIELHCLK   88 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~--~~~~~~~~   88 (315)
                      .|..++.... ..++. . ||.|+.|-... +++-........|..++-... ..++.. +|.|+.|-..  ++.-....
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l~-~G~v~~wG~n~~Gqlg~P~~   99 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLALK-DGEVIAWGGNEDGQTTVPAE   99 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEEE-TTEEEEEECCTTSTTCCCGG
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEEE-CCEEEEeeCCCCCCCCCCcc
Confidence            4555554432 23333 4 88999996543 221111112235666655433 334443 8999999653  22111111


Q ss_pred             cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCccee
Q psy9936          89 VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA  168 (315)
Q Consensus        89 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~  168 (315)
                      ....|..++......  +.-. +|.|+.|-....-.+.........|..++...+.. ++. . ||.|..|-....-.+.
T Consensus       100 ~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~l-~-~G~v~~wG~n~~gqlg  173 (282)
T 3qhy_B          100 ARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LAV-K-NGGVIAWGDNYFGQTT  173 (282)
T ss_dssp             GSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE-E-TTEEEEEECCTTSTTS
T ss_pred             cCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EEE-E-CCEEEEecCCCCCCCC
Confidence            124677777665433  3334 89999997653211111111223566666544332 222 3 6889999766432222


Q ss_pred             EeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         169 SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       169 ~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      .-......|..++...... ++.  .||.++.|-.....++-........|..++-..+..++.+ ++.+..|--
T Consensus       174 ~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~  244 (282)
T 3qhy_B          174 VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK-NGKVIAWGS  244 (282)
T ss_dssp             CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE-TTEEEEEST
T ss_pred             CceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE-CCEEEEecC
Confidence            1111234677777654332 333  5899999976654222111122235777776666666666 888888864

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.54  E-value=0.28  Score=40.71  Aligned_cols=113  Identities=13%  Similarity=0.126  Sum_probs=72.3

Q ss_pred             ceEEEEcCCCeEEEEEccCCeEEEEeccC-CCCeEEEEE--cC-CCCEEEEE-cCCCeEEEEcCCCCcceeEeec----c
Q psy9936         103 FLLATASEEGYLSWLDTSIGKIVSDFSAK-KGKLSVMTQ--NP-YNACICLG-HRNGTVTMWSPTVQKPLASLLC----H  173 (315)
Q Consensus       103 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~--~p-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~----~  173 (315)
                      ..+++++.||.|+-+|..+|+..-.+... ..++....-  .+ ++..++.. +.||.|..++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999998887654 122222110  01 22333333 5899999999988854443331    1


Q ss_pred             cccEEE---EEE-C----CCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC
Q psy9936         174 KAGIQS---VAV-N----HTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR  216 (315)
Q Consensus       174 ~~~i~~---~~~-s----p~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  216 (315)
                      .+++..   ... .    ..+..+++|+.++.+.-.|+.++ +.+..+...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG-~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG-EIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTC-CEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC-cEEEEEecC
Confidence            122221   001 0    14557889999999999999999 888777644

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.39  E-value=2.5  Score=33.92  Aligned_cols=191  Identities=14%  Similarity=0.151  Sum_probs=97.0

Q ss_pred             CCeEEEEEccC-ceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC--CCEEEEeecCCceEEEEEcCCCceEEE
Q psy9936          31 RGHVAAFDWVR-KTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ--GIELHCLKVLNKVTRMEFLPYHFLLAT  107 (315)
Q Consensus        31 dg~i~v~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~  107 (315)
                      ||.|+.|-... +++-........|..++... ...++.. +|.|+.|-..  ++.-........|..++...... ++ 
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~-~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~-  155 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA-WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LA-  155 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET-TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EE-
T ss_pred             CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC-CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EE-
Confidence            78888886442 22111111234566665443 3455556 9999999652  22111112235677776554432 22 


Q ss_pred             EcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCC
Q psy9936         108 ASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT  187 (315)
Q Consensus       108 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~  187 (315)
                      -. ||.++.|-....-.+..-......|..++...+. .++.  .||.|..|-....-.+..-......|..|+-.....
T Consensus       156 l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~  231 (282)
T 3qhy_B          156 VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS  231 (282)
T ss_dssp             EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE
T ss_pred             EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE
Confidence            23 6889998765321111101112457777665433 3333  589999997654322211111123566666554433


Q ss_pred             EEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCC
Q psy9936         188 YMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGN  236 (315)
Q Consensus       188 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  236 (315)
                       ++..  ||.+..|-.... .++.   ....|.+++-.+...++...++
T Consensus       232 -~al~--~g~v~~wG~n~~-gq~~---v~~~v~~iaaG~~h~~al~~~~  273 (282)
T 3qhy_B          232 -LALK--NGKVIAWGSSRT-APSS---VQSGVSSIEAGPNAAYALKGGS  273 (282)
T ss_dssp             -EEEE--TTEEEEESTTCC-CCGG---GSSCEEEEEECSSCEEEEEC--
T ss_pred             -EEEE--CCEEEEecCCCC-cccc---CCCCcEEEEECcCeEEEEecCC
Confidence             3333  899999976654 3332   2335666666665555555444

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.36  E-value=1.8  Score=37.64  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             CCeEEEEEcCCCC-EEEEEcCCCeEEEEcCCCC---cceeEee---------cccccEEEEEECCC----CCEEEEeeC-
Q psy9936         133 GKLSVMTQNPYNA-CICLGHRNGTVTMWSPTVQ---KPLASLL---------CHKAGIQSVAVNHT----GTYMATSAG-  194 (315)
Q Consensus       133 ~~v~~~~~~p~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~---------~~~~~i~~~~~sp~----g~~l~~~~~-  194 (315)
                      .....|+|.|+|. .|+++...|.|++++....   ..+..+.         ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3467899999996 4555667899999975432   1222221         01356789999997    443333221 


Q ss_pred             -C----------CcEEEEEccCC---------CCCeeEecc---CCCceeEEEccCC-eEEEEcCC
Q psy9936         195 -D----------SQLRIWDVRNL---------EGPLNTFRT---RTPINNLAFSQRG-LLATSRGN  236 (315)
Q Consensus       195 -d----------~~i~iwd~~~~---------~~~~~~~~~---~~~v~~~~~s~~g-~~~~~~~~  236 (315)
                       +          ..|.-|.+...         .+.+..+..   +.....|+|.||| +|++.+|+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          13444555421         012222221   1236789999999 56666654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.16  E-value=5.4  Score=34.63  Aligned_cols=101  Identities=11%  Similarity=0.033  Sum_probs=58.5

Q ss_pred             CcEEEEEEcCCCC-EEEEEcCCCeEEEEEccCce---EEEEec---C-------CCceeEEEEeec----CcEEEEEe--
Q psy9936          11 FGIYRMNYTKNGR-HLLLGGKRGHVAAFDWVRKT---LACEMN---V-------MEEVYDIKWLHL----ETMFAVAQ--   70 (315)
Q Consensus        11 ~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~---~~~~~~---~-------~~~v~~~~~~~~----~~~l~~~~--   70 (315)
                      ..+..|+|.|||. .|+++...|.|++++.....   .+..+.   .       ......|+|+|+    +.++++-+  
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567999999996 44445678999999754321   222221   1       346788999996    44444322  


Q ss_pred             -C----------CeEEEEeCCC-----------CEEEEeec---CCceEEEEEcCCCceEEEEcCC
Q psy9936          71 -K----------DWVYIYDNQG-----------IELHCLKV---LNKVTRMEFLPYHFLLATASEE  111 (315)
Q Consensus        71 -~----------~~i~i~~~~~-----------~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d  111 (315)
                       +          ..|.-|.+..           ..+..+..   ......|.|.|||.++++.+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             1          1344455421           11222221   1346789999999877766543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.50  E-value=7.1  Score=32.82  Aligned_cols=170  Identities=12%  Similarity=0.015  Sum_probs=88.0

Q ss_pred             EEEEEcCCCeEEEEEccC-c-eEEEE--ecCCCceeEEEEee--cCcEEEEEeCC----eEEEEeCCCCEEEEeec----
Q psy9936          24 HLLLGGKRGHVAAFDWVR-K-TLACE--MNVMEEVYDIKWLH--LETMFAVAQKD----WVYIYDNQGIELHCLKV----   89 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~-~-~~~~~--~~~~~~v~~~~~~~--~~~~l~~~~~~----~i~i~~~~~~~~~~~~~----   89 (315)
                      .|.+++..| +.+++... + .....  ......|.++++.|  ++.+++.+..+    .|...+-.+.....+..    
T Consensus        24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~  102 (394)
T 3b7f_A           24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAF  102 (394)
T ss_dssp             EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCC
T ss_pred             EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccC
Confidence            667777777 55555432 2 22211  12345699999998  66777776665    55554433333222221    


Q ss_pred             -----------CCceEEEEEcCC--CceEEEEcCCCeEEEEEccCCeEEEEecc-------------------CCCCeEE
Q psy9936          90 -----------LNKVTRMEFLPY--HFLLATASEEGYLSWLDTSIGKIVSDFSA-------------------KKGKLSV  137 (315)
Q Consensus        90 -----------~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------------------~~~~v~~  137 (315)
                                 ...|.++++.|.  ...+++++..+.|...+ +.++.-..+..                   ....+.+
T Consensus       103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~  181 (394)
T 3b7f_A          103 NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS  181 (394)
T ss_dssp             CCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred             CCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence                       124778888872  45566666566554443 22332222211                   1234788


Q ss_pred             EEEcCC-CCEEEEEcCCCeEEEEcCCCCcceeEeec-----c--------cccEEEEEECCC-CCEEEEeeCCC
Q psy9936         138 MTQNPY-NACICLGHRNGTVTMWSPTVQKPLASLLC-----H--------KAGIQSVAVNHT-GTYMATSAGDS  196 (315)
Q Consensus       138 ~~~~p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~--------~~~i~~~~~sp~-g~~l~~~~~d~  196 (315)
                      |.++|. ...|+.+..++.|...+-. ++.-..+..     +        ...+.++.++|. ...|..+...+
T Consensus       182 i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          182 ILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             EEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            999883 3445555444544444322 222222110     0        134889999986 35566665544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.35  E-value=7.3  Score=32.74  Aligned_cols=171  Identities=12%  Similarity=0.025  Sum_probs=85.6

Q ss_pred             CCcEEEEEEcC--CCCEEEEEcCCC----eEEEEEccCceEEEEecC---------------CCceeEEEEee---cCcE
Q psy9936          10 QFGIYRMNYTK--NGRHLLLGGKRG----HVAAFDWVRKTLACEMNV---------------MEEVYDIKWLH---LETM   65 (315)
Q Consensus        10 ~~~v~~~~~s~--~~~~l~~~~~dg----~i~v~~~~~~~~~~~~~~---------------~~~v~~~~~~~---~~~~   65 (315)
                      ...|.+|++.|  .+..++ ++..|    .|...+ +.++.-..+..               ...|.++++.|   .+.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            56799999998  454444 44344    344332 33322111110               12467788886   4566


Q ss_pred             EEEEeCCeEEEEeCCCCEEEEeec--------------------CCceEEEEEcCC-CceEEEEcCCCeEEEEEccCCeE
Q psy9936          66 FAVAQKDWVYIYDNQGIELHCLKV--------------------LNKVTRMEFLPY-HFLLATASEEGYLSWLDTSIGKI  124 (315)
Q Consensus        66 l~~~~~~~i~i~~~~~~~~~~~~~--------------------~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~  124 (315)
                      ++.+..+.|+..+-.+.....+..                    ...+.+|.++|. ...++.+..++.|...+ ..++.
T Consensus       132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t  210 (394)
T 3b7f_A          132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD  210 (394)
T ss_dssp             EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred             EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence            666666777666544444333321                    135778999884 34455554444444332 22332


Q ss_pred             EEEeccC-------------CCCeEEEEEcCC-CCEEEEEcCCCeEEEEcCCCCcceeEeec--cc---ccEEEEEECCC
Q psy9936         125 VSDFSAK-------------KGKLSVMTQNPY-NACICLGHRNGTVTMWSPTVQKPLASLLC--HK---AGIQSVAVNHT  185 (315)
Q Consensus       125 ~~~~~~~-------------~~~v~~~~~~p~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~---~~i~~~~~sp~  185 (315)
                      -..+...             ...+..+.++|. ...|+.+...+ |...+-. ++.-..+..  ..   ..+..++++|.
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~  288 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQR  288 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECCCCCCCCCccceEEEEECCC
Confidence            2222110             124788999986 35666665544 4443322 221111111  11   23567888864

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.80  E-value=12  Score=34.48  Aligned_cols=210  Identities=10%  Similarity=0.075  Sum_probs=110.4

Q ss_pred             EEEE-EcCCCCEEEEEc----CC-CeEEEEEccCceEEEE-ecCCC--------ceeEEEEeecCcEEEEEe--------
Q psy9936          14 YRMN-YTKNGRHLLLGG----KR-GHVAAFDWVRKTLACE-MNVME--------EVYDIKWLHLETMFAVAQ--------   70 (315)
Q Consensus        14 ~~~~-~s~~~~~l~~~~----~d-g~i~v~~~~~~~~~~~-~~~~~--------~v~~~~~~~~~~~l~~~~--------   70 (315)
                      ..+. ++|++++++.+-    .| ..++++|+.+++.+.. +....        ....++|..+..++++..        
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence            4555 899999877542    22 4799999999987631 11000        013448886555555431        


Q ss_pred             ---CCeEEEEeCCC---CEEEEeecC-Cc-eEEEEEcCCCce-----EEEEc---CCCeEEEEEccC--CeEEEEeccCC
Q psy9936          71 ---KDWVYIYDNQG---IELHCLKVL-NK-VTRMEFLPYHFL-----LATAS---EEGYLSWLDTSI--GKIVSDFSAKK  132 (315)
Q Consensus        71 ---~~~i~i~~~~~---~~~~~~~~~-~~-v~~~~~~~~~~~-----l~~~~---~d~~i~~~d~~~--~~~~~~~~~~~  132 (315)
                         ...|+.|.+-+   .....+... .. -.....++++.+     +++.+   ....+.+.|...  ++ ...+....
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~  290 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS  290 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence               14688898732   122222222 22 234555666652     44433   224466777653  33 23332222


Q ss_pred             CCeEEEEEcCCCCEEEEE----------cCCCeEEEEcCCCCc-------ceeE-ee-cccccEEEEEECCCCCEEEEee
Q psy9936         133 GKLSVMTQNPYNACICLG----------HRNGTVTMWSPTVQK-------PLAS-LL-CHKAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       133 ~~v~~~~~~p~~~~l~~~----------~~d~~i~i~d~~~~~-------~~~~-~~-~~~~~i~~~~~sp~g~~l~~~~  193 (315)
                      . . .+..++++.+++..          ...+.|...|+.++.       .... +. .....+..+.|..+ .++++..
T Consensus       291 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          291 D-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             T-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             c-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence            2 1 13344566555532          146778899887642       2222 32 23356778899876 4666666


Q ss_pred             CCCc--EEEEEccCCCC-CeeE-eccC--CCceeEEEccCC
Q psy9936         194 GDSQ--LRIWDVRNLEG-PLNT-FRTR--TPINNLAFSQRG  228 (315)
Q Consensus       194 ~d~~--i~iwd~~~~~~-~~~~-~~~~--~~v~~~~~s~~g  228 (315)
                      .++.  +.++++.++ . .... +...  ..+.....++++
T Consensus       368 ~~~~~~l~~~~~~~g-~~~~~~~i~lp~~~~~~~~~~~~~~  407 (711)
T 4hvt_A          368 DNVVAKVVTFTLENE-QWTKPVVLKLPYQNAIFGMSSYEEE  407 (711)
T ss_dssp             ETTEEEEEEECEETT-EECCCEEECCCSTTCEEEEECCTTC
T ss_pred             ECCEEEEEEEECCCC-ceEEEeccCCCCCeEEEEEeecCcC
Confidence            6664  677777655 3 2233 3222  235445555555

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=88.51  E-value=9.3  Score=31.41  Aligned_cols=152  Identities=11%  Similarity=0.105  Sum_probs=84.2

Q ss_pred             CCcEEEEE-EcC--CCCEEEEEcCCCeEEEEEccCce-------EEEEecCCCceeEEEEee-cCcEEEEEeCCeEEEEe
Q psy9936          10 QFGIYRMN-YTK--NGRHLLLGGKRGHVAAFDWVRKT-------LACEMNVMEEVYDIKWLH-LETMFAVAQKDWVYIYD   78 (315)
Q Consensus        10 ~~~v~~~~-~s~--~~~~l~~~~~dg~i~v~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~i~i~~   78 (315)
                      ...|.++. +.+  +..++++.+.+|.++.-.+....       ....+...+.+..+.... +..+++.+..|.+..+.
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            45555553 332  46799999999999988765422       112233334454444433 45566667788877776


Q ss_pred             CC--CC--------EEE--EeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe-------EEEE--eccCCCCeEE
Q psy9936          79 NQ--GI--------ELH--CLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK-------IVSD--FSAKKGKLSV  137 (315)
Q Consensus        79 ~~--~~--------~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------~~~~--~~~~~~~v~~  137 (315)
                      ..  .-        -..  .+.....|.++...+.+..++..+..|.++.-.+..-.       -+..  +....+.+..
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~  253 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVG  253 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEE
T ss_pred             CcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEE
Confidence            54  21        111  12233567777666666688888899998888765321       1111  2121233444


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEcC
Q psy9936         138 MTQNPYNACICLGHRNGTVTMWSP  161 (315)
Q Consensus       138 ~~~~p~~~~l~~~~~d~~i~i~d~  161 (315)
                      +....+...++..+.+|.+.-++.
T Consensus       254 ~~~~~~~~~i~l~T~~G~~ir~~~  277 (327)
T 3uc1_A          254 ALIVDDDSELYAVTSGGGVIRTAA  277 (327)
T ss_dssp             EEEECTTCEEEEEEGGGCEEEEEG
T ss_pred             EEEeCCCccEEEEcCCCeEEEEeh
Confidence            433333344555556666666654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=83.18  E-value=9.1  Score=34.14  Aligned_cols=60  Identities=5%  Similarity=-0.015  Sum_probs=42.3

Q ss_pred             CeEEEEEcCCCCEEEEEcC------------CCeEEEEcCCCCcceeEeecc-cccEEEEEECCCCCEEEEee
Q psy9936         134 KLSVMTQNPYNACICLGHR------------NGTVTMWSPTVQKPLASLLCH-KAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~~~  193 (315)
                      ....|.|.++|.+.+....            ...+..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            4678999999987763321            226777788777655444432 35789999999999887763

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=83.03  E-value=17  Score=29.50  Aligned_cols=185  Identities=10%  Similarity=0.093  Sum_probs=104.2

Q ss_pred             cCCCCEEEEEcCCCeEEEEEccCceE-------EEE--ecCCCceeEEEEee-cCcEEEEEeCCeEEEEeCC---CCEEE
Q psy9936          19 TKNGRHLLLGGKRGHVAAFDWVRKTL-------ACE--MNVMEEVYDIKWLH-LETMFAVAQKDWVYIYDNQ---GIELH   85 (315)
Q Consensus        19 s~~~~~l~~~~~dg~i~v~~~~~~~~-------~~~--~~~~~~v~~~~~~~-~~~~l~~~~~~~i~i~~~~---~~~~~   85 (315)
                      -|+..++++.+.+|.|+--.+...+.       ...  +...+.+..+.... ...+++.+..|.++-+...   .....
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            35667888889999998876653321       111  22333444444443 3456666667876666542   11000


Q ss_pred             ----------EeecCCceEEEEEcC---CCceEEEEcCCCeEEEEEccC-------CeEEEEeccCCCCeEEEEEcCCCC
Q psy9936          86 ----------CLKVLNKVTRMEFLP---YHFLLATASEEGYLSWLDTSI-------GKIVSDFSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        86 ----------~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~~p~~~  145 (315)
                                .+.....|.++...+   +..+++..+..|.++...+..       |.....+.. ...+..+.......
T Consensus        85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence                      122224455554333   356788889999998887743       222223333 34455554444455


Q ss_pred             EEEEEcCCCeEEEEcCCC---------CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         146 CICLGHRNGTVTMWSPTV---------QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      .++..+.+|.+..+....         |.....+. ....|..+...+++..+++.+..|..+...+..
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            677788889888887542         11122222 234566665555667788889999998888854

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.69  E-value=7.8  Score=37.14  Aligned_cols=40  Identities=10%  Similarity=0.033  Sum_probs=34.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN   49 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~   49 (315)
                      ...+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus       235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            3457788888888999999999999999999999887754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=82.66  E-value=6.5  Score=35.28  Aligned_cols=58  Identities=3%  Similarity=-0.020  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCCEEEEEcCC------------CeEEEEcCCCCcceeEeecc-cccEEEEEECCCCCEEEEe
Q psy9936         135 LSVMTQNPYNACICLGHRN------------GTVTMWSPTVQKPLASLLCH-KAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~~  192 (315)
                      .-.|+|+|.|++++.-..+            ..+.+.+..+++...-+.++ ...++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            5679999999966654322            35677777777655555443 4689999999999987665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.53  E-value=38  Score=32.42  Aligned_cols=38  Identities=3%  Similarity=-0.024  Sum_probs=32.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee
Q psy9936         134 KLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL  171 (315)
Q Consensus       134 ~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  171 (315)
                      .+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677788888899999999999999999998877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 3e-14
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 5/162 (3%)

Query: 46  CEMNVMEEVYDIKWLHLETMFAVAQKDW-VYIYD-NQGIELHCLKV-LNKVTRMEFLPYH 102
                  +V  +       +F     D    ++D  +G+         + +  + F P  
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238

Query: 103 FLLATASEEG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS 160
              AT S++    L  L      +          ++ ++ +     +  G+ +    +W 
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
                    L  H   +  + V   G  +AT + DS L+IW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 13/208 (6%)

Query: 40  VRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD--WVYIYDNQGIELHCLKVLNK-VTRM 96
            R+TL   +    ++Y + W     +   A +D   +        ++H + + +  V   
Sbjct: 47  TRRTLRGHLA---KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 97  EFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG---KLSVMTQNPYNACICLGHRN 153
            + P    +A    +   S  +    +     S +           +   +  I     +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF 213
            T  +W     +   +   H   + S+++        + A D+  ++WDVR       TF
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTF 222

Query: 214 RTRT-PINNLAFSQRG--LLATSRGNIV 238
                 IN + F   G      S     
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATC 250

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 21/196 (10%), Positives = 60/196 (30%), Gaps = 1/196 (0%)

Query: 8   DLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA-CEMNVMEEVYDIKWLHLETMF 66
           D    ++ +      +      +   +   +     +A C  +    V+ +     +   
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

Query: 67  AVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS 126
              +     I          +         +       L + S +  +   D S G  + 
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 127 DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTG 186
                   +  +  +     I     + T+ +W    ++ + +L  H+  + S+  + T 
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301

Query: 187 TYMATSAGDSQLRIWD 202
            Y+ T + D  +++W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 1e-12
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 23/160 (14%)

Query: 96  MEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL------ 149
           +       L+A+ S +  +     +  +  ++    +  +  ++  P ++   +      
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208

Query: 150 --------------GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD 195
                         G R+ T+ MW  +    L +L+ H   ++ V  +  G ++ + A D
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 268

Query: 196 SQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG-LLATS 233
             LR+WD +N    + T       + +L F +    + T 
Sbjct: 269 KTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTG 307

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 8e-06
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT 217
           W P       +L  H++ +  V  +   + M +++ D+ +++WD    +    T +  T
Sbjct: 3   WIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHT 59

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 5/167 (2%)

Query: 71  KDWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS 129
           K+W      +  E + L    + VTR+ F P   ++ +ASE+  +   D   G       
Sbjct: 1   KEW----IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56

Query: 130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM 189
                +  ++ +     +     + T+ +W     + + ++  H   + SV++   G ++
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116

Query: 190 ATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGN 236
            +++ D  +++W+V+           R  +  +  +Q G L  S  N
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 163

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 7e-12
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%)

Query: 91  NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL- 149
           + V  + F      + + S +  +   +       SD          +T   +   +   
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 150 -----------GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNH------TGTYMATS 192
                      G ++  V  W      PL  L  H+  + SVAV +           AT 
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374

Query: 193 AGDSQLRIWDVRNL 206
           +GD + RIW  + +
Sbjct: 375 SGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 144 NACICLGHRNGTVTMWSPTVQK----PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLR 199
                    N    +++P + +     L   L H + +  V  ++ G Y+AT   +   +
Sbjct: 28  VPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQ 86

Query: 200 IWDVRNLE 207
           ++ V +  
Sbjct: 87  VYRVSDGS 94

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 5e-08
 Identities = 18/167 (10%), Positives = 45/167 (26%), Gaps = 2/167 (1%)

Query: 37  FDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRM 96
            +                 DI     +                +G +L      +++  +
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230

Query: 97  EFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV 156
            + P    LA   E   +  L  +          +   LS+              ++  +
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL-KFAYCGKWFVSTGKDNLL 289

Query: 157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV 203
             W       +       + + S  ++    Y+ T +GD +  +++V
Sbjct: 290 NAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 24/229 (10%), Positives = 63/229 (27%), Gaps = 10/229 (4%)

Query: 12  GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL------ACEMNVMEEVYDIKWLHLETM 65
            I       +G  L++GG+   ++ +D    T                +       +   
Sbjct: 99  YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158

Query: 66  FAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV 125
                   V+   NQ +        +  + ++       L T   +              
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQ 217

Query: 126 SDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHT 185
                   ++  +   P    + +G  +  V +     +     L  H++ + S+   + 
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL-HVNKPDKYQLHLHESCVLSLKFAYC 276

Query: 186 GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG-LLATS 233
           G +  ++  D+ L  W        +   +  + + +   S     + T 
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGA-SIFQSKESSSVLSCDISVDDKYIVTG 324

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP--- 209
           +  +    P   + + +L  H   + +V +++   ++ T  G   +++WD+ +       
Sbjct: 31  DALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPV 88

Query: 210 --LNTFRTRTPINNLAFSQRG 228
             L+       I +      G
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDG 109

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 21/193 (10%), Positives = 47/193 (24%), Gaps = 7/193 (3%)

Query: 15  RMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWV 74
           R        +L+     G +         +  +         ++  + +   A     + 
Sbjct: 139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198

Query: 75  YIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK 134
                +             T   F       ATA        +D   GK  +   A   +
Sbjct: 199 PHQSPRHEFSML------YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE 252

Query: 135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG 194
           L             +      +  +    +K + +          VA +  G  +     
Sbjct: 253 LYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGT 311

Query: 195 DSQLRIWDVRNLE 207
            + L +++   LE
Sbjct: 312 FNDLAVFNPDTLE 324

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 32/202 (15%), Positives = 58/202 (28%), Gaps = 8/202 (3%)

Query: 18  YTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIY 77
           Y K           G    F  +    +     +  V            +      +   
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 78  DNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSW-LDTSIGKIVSDFSAKKGKLS 136
           D +            +  + F+    L+A   +   + +  D++ GK+         K S
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS 290

Query: 137 VMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTG----TYMATS 192
                          +  +    S      L SL  HK  +  ++V   G    +   T+
Sbjct: 291 SQRGLTARERFQNLDKKASSE-GSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTT 347

Query: 193 AGDSQLRIWDVRNLEGPLNTFR 214
             D  + IWDVR+LE  L   +
Sbjct: 348 GMDGGMSIWDVRSLESALKDLK 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 141 NPYNACICLGHRNGTVTMWSPTVQKP--LASLLCHKAGIQSVAVNHTGTYMATSAGDSQL 198
           N     I +   N  V ++  +  K   +  L  H   +  V        + T   D   
Sbjct: 16  NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75

Query: 199 RIWD 202
            +W 
Sbjct: 76  YVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 177 IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG-PLNTFRTRT-PINNLAFSQRG-LLATS 233
           I   A N   T +A    + ++ I++    +   ++  +     +  + ++     + T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 17/218 (7%), Positives = 47/218 (21%), Gaps = 24/218 (11%)

Query: 13  IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD 72
           +                +   VA +D    +         ++  + W    +      +D
Sbjct: 96  LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD 155

Query: 73  WVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG---------- 122
              +    G  +    + +        P    +    E   +                  
Sbjct: 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215

Query: 123 ---KIVSDFSAKKGKLSVMTQNPYNACIC----------LGHRNGTVTMWSPTVQKPLAS 169
                +     + G++++      +                     +  +       +  
Sbjct: 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR 275

Query: 170 LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE 207
           +        SV V+  G+ +        L  +D   LE
Sbjct: 276 VP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 25/225 (11%), Positives = 65/225 (28%), Gaps = 10/225 (4%)

Query: 16  MNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVY 75
                + + ++ G +   +  +D         +                + + A    V 
Sbjct: 101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160

Query: 76  IYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKL 135
           ++D +          +             + + S +  +   D   G  +   +  +   
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 220

Query: 136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGI-QSVAVNHTGTYMATSAG 194
           S M        +  G+ + TV +W     + L +L            +     ++ TS+ 
Sbjct: 221 SGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278

Query: 195 DSQLRIWDVRNLEGPLNTFRTRT------PINNLAFSQRGLLATS 233
           D  +++WD++  E  +    T         +  +  S   L+   
Sbjct: 279 DGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT- 217
           W     K    L  H   + +  +   G  + + + D+ L++W     +  L T    T 
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58

Query: 218 PINNLAFS 225
            + +    
Sbjct: 59  GVWSSQMR 66

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 172 CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG---PLNTFRTRTPINNLAFSQRG 228
             K  I  + +  + + +  ++ D  L ++           L + R + P+    F    
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 7/70 (10%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 141 NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI 200
           +P +  +     +G ++ W+   +K + +          V +  +   +  +  D   + 
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKT 318

Query: 201 WDV--RNLEG 208
                + +E 
Sbjct: 319 NAAIDQTIEL 328

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 138 MTQNPYNACICLGHRNGTVTMWSPT--VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD 195
           ++ +P N  +  G  + +V +W+       P+     H     +  +    T + ++  D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 196 SQLRIWDV 203
           S ++ W+V
Sbjct: 290 SNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 1e-04
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT--RTPINNLAF 224
           H   I +++ +  G  + ++  +  +  WD+         F     T I  +  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKT 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 6e-06
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 136 SVMTQNPYNACICLGHRNGTVTMWSP-TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG 194
               +      +  G  +  + ++S     K + +L  HK G+ ++      T + +S  
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277

Query: 195 DSQLRIWDV 203
           D+ ++ W+V
Sbjct: 278 DACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 1/97 (1%)

Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ 197
                    +         T         + ++    A   +         +AT + D+ 
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238

Query: 198 LRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATS 233
           + I+ V+     +         +NNL +     L +S
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSS 275

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLA 223
            + L ++  H  GI ++ VN     + + + D ++  W   ++            I +L 
Sbjct: 3   DEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQD-----HSNLIVSLD 53

Query: 224 FSQRGLLA 231
            S+    +
Sbjct: 54  NSKAQEYS 61

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 13/157 (8%)

Query: 55  YDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYL 114
            ++     + + + +    + +++    E       +K           L+ + S +  +
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 200

Query: 115 SWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW---------SPTVQK 165
              D   G  +      +    V      N  I  G  +G + +W         +P    
Sbjct: 201 RLWDIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
            L +L+ H   +  +  +     + +S+ D  + IWD
Sbjct: 259 CLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 27/226 (11%), Positives = 72/226 (31%), Gaps = 6/226 (2%)

Query: 12  GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQ 70
           G+Y + Y  + + ++ G +   +  +D         +      V  +++     +   + 
Sbjct: 17  GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSD 74

Query: 71  KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA 130
                   N G  L+ L    +           ++  + +     W   S   I      
Sbjct: 75  STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134

Query: 131 KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMA 190
              + +V   +  +  I     + T+ +W+ +  + + +L  HK GI  +        + 
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV 192

Query: 191 TSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGN 236
           + + D+ +R+WD+      L        +          + +   +
Sbjct: 193 SGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFDNKRIVSGAYD 237

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 164 QKPLASLLCHKAGIQSV-AVNHTGTYMATSAGDSQLRIWDVRNLE 207
           +  L  + C     + V  + +    + +   D+ ++IWD   LE
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE 46

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 172 CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLL 230
            H   + ++   +    +  S  ++Q  I+++R+ +            I ++ F  + L+
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLV 338

Query: 231 ATS 233
           A  
Sbjct: 339 AAV 341

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLA 231
           H   + +  +     Y+ T A D  +R++D  N +  L         +  L ++  G+L 
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGGILV 68

Query: 232 TS 233
           + 
Sbjct: 69  SG 70

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 13/207 (6%), Positives = 41/207 (19%), Gaps = 21/207 (10%)

Query: 14  YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD- 72
           +             G     +  +D   + +          Y   +              
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200

Query: 73  WVYIYDNQGIELHCLKVL---------NKVTRMEFLPYHFLLATASEEGYLSW-----LD 118
                D   +      V                + +P          +    +     ++
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 119 TSIGKIVSDFSAKKGKLSV--MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAG 176
              G        +   L         + A        G +  +    +K    +   K  
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNN 316

Query: 177 IQSVAVNHTGTYMATSAGDSQLRIWDV 203
           +  + ++     +     D ++  + +
Sbjct: 317 LTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 9/236 (3%)

Query: 12  GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK 71
           G  R+  T    H+L             +      +          ++ H+         
Sbjct: 80  GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 139

Query: 72  DWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK 131
             +         +                    +       + S        + S     
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199

Query: 132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAT 191
            G L   T       +  G         +   +      + H   +  +  +  GT +A+
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDG----TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 192 SAGDSQLRIWDVRNLEGPLNTFRTRTPINN----LAFSQRGLLATSRGNIVEFLKP 243
           ++ D  ++IW+V  L+    T    T I +    + ++++ L++ S    + F+ P
Sbjct: 256 ASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 116 WLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKA 175
            + T   +      A    +  ++ N     +C    +G +  W    ++ + +L  H  
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 176 GIQ----SVAVNHTGTYMATSAGDSQLRIWDVRNLE 207
            I+     +AV+  G  +A         ++DV+ L+
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPG------VFDVKFLK 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP------LNTFRTRTPINNLAFSQ 226
           H A I SV+     ++  + +GD  L++WD + L+         + F  ++ ++++   Q
Sbjct: 13  HDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 227 RGLLATSRGNIV 238
                     +V
Sbjct: 71  AIERDAFELCLV 82

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-- 215
                  +       H + + S++ N +G  + ++  D +LR WDV+  E  + T     
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHC 331

Query: 216 ---RTPINNLAFSQRG-LLATSRGNIVEFLK 242
                  + LA  + G  LA      V+FLK
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK--AGIQSVAVNHTGT-YMATSAG 194
                 +        + T+ +W  T  K +      K   G Q V V  TG   + + + 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 195 DSQLRIWDV 203
           D  L  +++
Sbjct: 317 DGTLNFYEL 325

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 137 VMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM--ATSAG 194
           +               +  V +      + LA        I S+ V+     +  A S G
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTG 321

Query: 195 DSQLRIWDVRNLE 207
           D  L I D  + E
Sbjct: 322 DKTLYIHDAESGE 334

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.51
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.45
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.39
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.38
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.38
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.36
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.21
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.19
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.16
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.91
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.6
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.33
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.95
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.68
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.45
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.44
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.41
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.3
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.18
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.15
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.13
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.73
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.59
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.46
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.43
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.41
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.25
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.65
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.55
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.69
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.49
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.3
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	92.27
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.92
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.83
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	84.05
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	81.11
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	80.5

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-40  Score=280.24  Aligned_cols=262  Identities=16%  Similarity=0.174  Sum_probs=223.4

Q ss_pred             EEEeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE---EEE---ecCCCceeEEEEeecCcEEEEEe-CCeEEE
Q psy9936           4 QFDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL---ACE---MNVMEEVYDIKWLHLETMFAVAQ-KDWVYI   76 (315)
Q Consensus         4 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~---~~~---~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i   76 (315)
                      +..+....+|.+++|+|+|++|++|+ ||.|+|||+.++..   ...   ..|.+.|.+++|+|++++|++++ |+.|++
T Consensus        45 ~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            44555578999999999999999987 89999999876432   122   23778899999999999998876 899999


Q ss_pred             EeCCCCE---EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC
Q psy9936          77 YDNQGIE---LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR  152 (315)
Q Consensus        77 ~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  152 (315)
                      ||+....   ...+ .+...+.++.|+|++.++++++.++.|.+||+.+++.......|...+.+++|+|++..+++++.
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9985432   2223 34578999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEE-
Q psy9936         153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLA-  231 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~-  231 (315)
                      |+.+++||+++++.+..+. |...|.+++|+|++++|++++.|+.+++||+++. ...........|++++|+|+|.++ 
T Consensus       204 d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~v~~s~~g~~l~  281 (337)
T d1gxra_         204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc-ccccccccccccceEEECCCCCEEE
Confidence            9999999999998887775 8899999999999999999999999999999987 655544444579999999999533 


Q ss_pred             -EEcCCEEEecCC---------------CceeecccccccccCCcchhhhhhh
Q psy9936         232 -TSRGNIVEFLKP---------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       232 -~~~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                       ++.|+.|++|+.               .+++|+|+++++++++.++.++.+.
T Consensus       282 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence             456899999976               5788999999999999998877654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-39  Score=269.62  Aligned_cols=233  Identities=16%  Similarity=0.247  Sum_probs=202.7

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEE--EEec-CCCceeEEEEeecCcEEEEEeC---CeEEEEeCCC-C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA--CEMN-VMEEVYDIKWLHLETMFAVAQK---DWVYIYDNQG-I   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~---~~i~i~~~~~-~   82 (315)
                      ...|++++|+|+|++||+|+.||.|+|||+.++...  ..+. |..+|.+++|+|++++|+++++   ..+++|+.+. .
T Consensus        58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccc
Confidence            689999999999999999999999999999877643  3344 7889999999999999888763   4689999854 3


Q ss_pred             EEEEe-ecCCceEEEEEcCCCce-EEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEc
Q psy9936          83 ELHCL-KVLNKVTRMEFLPYHFL-LATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS  160 (315)
Q Consensus        83 ~~~~~-~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d  160 (315)
                      ....+ .|...|.+++|+|++.+ |++|+.|+.|++||+++++....+..|...|+++.|+|++++|++++.|+.|++||
T Consensus       138 ~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d  217 (311)
T d1nr0a1         138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  217 (311)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccc
Confidence            33333 35578999999999875 78899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeEee-------cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC----ceeEEEccCCe
Q psy9936         161 PTVQKPLASLL-------CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP----INNLAFSQRGL  229 (315)
Q Consensus       161 ~~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~g~  229 (315)
                      ++++..+..+.       +|..+|++++|+|++++|++|+.||.|+|||++++ +++..+..+..    +.++.|+++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~~~~~~~~~~~~~~~~~~~l  296 (311)
T d1nr0a1         218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIWTKQAL  296 (311)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             cccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEECCCCccceEEEEEecCCEE
Confidence            99887766553       58889999999999999999999999999999998 88888876653    46778888878


Q ss_pred             EEEEcCCEEEecCC
Q psy9936         230 LATSRGNIVEFLKP  243 (315)
Q Consensus       230 ~~~~~~~~i~~~~~  243 (315)
                      ++++.||.|++|+|
T Consensus       297 ~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         297 VSISANGFINFVNP  310 (311)
T ss_dssp             EEEETTCCEEEEET
T ss_pred             EEEECCCEEEEEeC
Confidence            88899999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-38  Score=265.46  Aligned_cols=238  Identities=14%  Similarity=0.206  Sum_probs=206.9

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      ...|.+ .++|++++|+|++++||+|+.||.|+|||+.+++.+..+. |..+|.+++|+|++.++++++ |+.+.+|+..
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            445667 8899999999999999999999999999999999988887 888999999999999998886 8899999852


Q ss_pred             CC-----EEEE------------------------------------------eecCCceEEEEEcCCCceEEEEcCCCe
Q psy9936          81 GI-----ELHC------------------------------------------LKVLNKVTRMEFLPYHFLLATASEEGY  113 (315)
Q Consensus        81 ~~-----~~~~------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~  113 (315)
                      ..     ....                                          ......+....+.+.+.++++++.|+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence            11     0000                                          002245677788888899999999999


Q ss_pred             EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee--cccccEEEEEECCCCCEEEE
Q psy9936         114 LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL--CHKAGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       114 i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~  191 (315)
                      |++||+++++.+..+.+|...|++++|+|++++|++|+.|+.|++||++....+..+.  .+...|.+++|+|++++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999887776654  46678999999999999999


Q ss_pred             eeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCCeE--EEEcCCEEEecC
Q psy9936         192 SAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLL--ATSRGNIVEFLK  242 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~--~~~~~~~i~~~~  242 (315)
                      |+.||.|++||+.++ +++..+..|. +|++++|+|++.+  .++.|+.|++|+
T Consensus       288 g~~dg~i~iwd~~~~-~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999998 8999998876 6999999999953  345689999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-38  Score=261.88  Aligned_cols=263  Identities=15%  Similarity=0.232  Sum_probs=234.2

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ   80 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~   80 (315)
                      .+.|.+ .++|++++|+|++++||+|+.||+|+|||+.+++.+..+. |...|.+++|+|++.+++.+. ++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            456777 7899999999999999999999999999999999988888 889999999999999998887 6788889885


Q ss_pred             CCEEEE--eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          81 GIELHC--LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        81 ~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      ......  ..+...+.++.|+|++..+++++.|+.+.+||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~  169 (317)
T d1vyhc1          90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  169 (317)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEE
Confidence            443332  345688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCC--------------------CEEEEeeCCCcEEEEEccCCCCCeeEeccCC-
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTG--------------------TYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-  217 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g--------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-  217 (315)
                      |++++++.+..+.+|...+.+++|+|++                    .++++++.|+.|++||++++ .++..+..|. 
T Consensus       170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~  248 (317)
T d1vyhc1         170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDN  248 (317)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSS
T ss_pred             EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCC
Confidence            9999999999999999999999998854                    47899999999999999998 8888888776 


Q ss_pred             CceeEEEccCCeE--EEEcCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         218 PINNLAFSQRGLL--ATSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       218 ~v~~~~~s~~g~~--~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      +|.+++|+|++.+  .++.|+.|++|+.                ++++|+|+++++++++.|+.++.+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            6999999999953  3456899999987                678899999999999998877654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-38  Score=262.29  Aligned_cols=255  Identities=13%  Similarity=0.085  Sum_probs=213.6

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC--E-EE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI--E-LH   85 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~--~-~~   85 (315)
                      +.+..++++|+|+.|+.++ ++.|.+|++.++.....+. |.+.|++++|+|+|++|++++ |+.|++||+...  . ..
T Consensus        18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc
Confidence            4556789999999999875 5579999999988877776 889999999999999999886 899999998542  1 22


Q ss_pred             Ee-ecCCceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEcCCCeEEEEcC
Q psy9936          86 CL-KVLNKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNAC-ICLGHRNGTVTMWSP  161 (315)
Q Consensus        86 ~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~~i~i~d~  161 (315)
                      .+ .|..+|.+++|+|++++|++++.  +..+++|++++++....+.+|...|++++|+|++++ |++|+.|+.|++||+
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            23 35689999999999999998875  456999999999999999999999999999999985 788999999999999


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc-------CC-CceeEEEccCCeEEE-
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-------RT-PINNLAFSQRGLLAT-  232 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~-~v~~~~~s~~g~~~~-  232 (315)
                      ++++....+..|..+|+++.|+|++++|++++.|+.|++||+.++ ..+..+..       |. +|++++|+|+|.+++ 
T Consensus       177 ~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t  255 (311)
T d1nr0a1         177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  255 (311)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccCccccccccccccccccccccccc-cccccccccccccccccccccccccCCCCCEEEE
Confidence            999999999999999999999999999999999999999999987 66655542       23 699999999995443 


Q ss_pred             -EcCCEEEecCC-----------------CceeecccccccccCCcchhhhhh
Q psy9936         233 -SRGNIVEFLKP-----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       233 -~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                       +.|+.|++|+.                 ..+.+.+++..+++++.++.++.+
T Consensus       256 gs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV  308 (311)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEE
Confidence             45899999986                 223455566678788777766543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-37  Score=265.52  Aligned_cols=232  Identities=12%  Similarity=0.132  Sum_probs=196.1

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE--EEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL--ACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~   85 (315)
                      .++|+|++|+|||++||+++.||.|+|||+.+++.  ...+. |..+|.+++|+|++++|++++ |+.|++||+.+....
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            57899999999999999999999999999987763  44555 889999999999999999876 899999999654332


Q ss_pred             E----eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeE----EEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEE
Q psy9936          86 C----LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKI----VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVT  157 (315)
Q Consensus        86 ~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  157 (315)
                      .    ..+...|.+++|+|+++.|++++.|+.+++|++.....    ......|...|.+++|+|++++|++|+.|+.|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence            2    23457899999999999999999999999999876532    333557888999999999999999999999999


Q ss_pred             EEcCCCC------------------cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-C
Q psy9936         158 MWSPTVQ------------------KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-P  218 (315)
Q Consensus       158 i~d~~~~------------------~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~  218 (315)
                      +||+...                  ..+....+|...|.+++|+|+|++|++++.|+.|++||+.++ .++..+..|. +
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~  245 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLASETLP  245 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCC
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc-cceeeeeccccc
Confidence            9997643                  234455678899999999999999999999999999999998 8888888776 7


Q ss_pred             ceeEEEccCCeEEEE-cCCEEEecC
Q psy9936         219 INNLAFSQRGLLATS-RGNIVEFLK  242 (315)
Q Consensus       219 v~~~~~s~~g~~~~~-~~~~i~~~~  242 (315)
                      |.+++|+|++.++++ .|+.++.|.
T Consensus       246 v~s~~fs~d~~~la~g~d~~~~~~~  270 (371)
T d1k8kc_         246 LLAVTFITESSLVAAGHDCFPVLFT  270 (371)
T ss_dssp             EEEEEEEETTEEEEEETTSSCEEEE
T ss_pred             ceeeeecCCCCEEEEEcCCceEEEE
Confidence            999999999976655 477665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-36  Score=250.30  Aligned_cols=236  Identities=12%  Similarity=0.151  Sum_probs=192.4

Q ss_pred             eeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC-
Q psy9936           7 LDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI-   82 (315)
Q Consensus         7 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~-   82 (315)
                      +.+ ..+|++++|+|+|++|++|+.||.|++||+.+++....+.  |...|.+++|+|++.+++++.|+.+++|+..+. 
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~   87 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG   87 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcc
Confidence            445 7899999999999999999999999999999999888775  778999999999999999999999999986321 


Q ss_pred             -------------EE----------------------------EEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccC
Q psy9936          83 -------------EL----------------------------HCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        83 -------------~~----------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  121 (315)
                                   ..                            ........+.+++|+|++++|++++.|+.|++||+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~  167 (299)
T d1nr0a2          88 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  167 (299)
T ss_dssp             SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                         00                            0011224577889999999999999999999999988


Q ss_pred             CeEEE-EeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce---eEeecccccEEEEEECCCCCEEEEeeCCCc
Q psy9936         122 GKIVS-DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL---ASLLCHKAGIQSVAVNHTGTYMATSAGDSQ  197 (315)
Q Consensus       122 ~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~  197 (315)
                      ++... ....|...|++++|+|++++|++++.|+.|++||+.++..+   ..+.+|..+|++++|+|++.+|++|+.|+.
T Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         168 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCE
Confidence            76544 34568899999999999999999999999999999876544   345678999999999999999999999999


Q ss_pred             EEEEEccCCCCCeeE--eccCC--CceeEEEccCCeE-EEEcCCEEEecCC
Q psy9936         198 LRIWDVRNLEGPLNT--FRTRT--PINNLAFSQRGLL-ATSRGNIVEFLKP  243 (315)
Q Consensus       198 i~iwd~~~~~~~~~~--~~~~~--~v~~~~~s~~g~~-~~~~~~~i~~~~~  243 (315)
                      |++||++++ .....  ...+.  .+..+.|.++..+ .++.|++|++|++
T Consensus       248 i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         248 VIVWNMNKP-SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             EEEEETTCT-TSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             EEEEECCCC-CcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            999999876 33322  22222  4677766665554 4456999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=253.91  Aligned_cols=231  Identities=12%  Similarity=0.141  Sum_probs=201.3

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce--EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT--LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELH   85 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~   85 (315)
                      ...|.+++|+|+|++|++++.||.|++||+....  ....+. |...+..+.|+|++.++++++ ++.|++|++.+....
T Consensus        97 ~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~  176 (337)
T d1gxra_          97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV  176 (337)
T ss_dssp             TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5679999999999999999999999999987543  444444 778899999999999998876 789999999665443


Q ss_pred             E--eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936          86 C--LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus        86 ~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                      .  ..+...+.+++|++++..+++++.|+.+++||+++++.+..+. |...|.+++|+|++++|++++.|+.+++||+++
T Consensus       177 ~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccc
Confidence            3  3356889999999999999999999999999999998887765 788899999999999999999999999999998


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEE--EEcCCEEEec
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLA--TSRGNIVEFL  241 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~--~~~~~~i~~~  241 (315)
                      ++.. ....|...|++++|+|+|++|++++.||.|++||+.++ +++..+..+.+|.+++|+|++.++  ++.|++|++|
T Consensus       256 ~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         256 PDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             SCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            8755 45569999999999999999999999999999999998 888888777789999999999543  3468999999


Q ss_pred             CC
Q psy9936         242 KP  243 (315)
Q Consensus       242 ~~  243 (315)
                      ++
T Consensus       334 dl  335 (337)
T d1gxra_         334 EV  335 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-36  Score=257.64  Aligned_cols=258  Identities=15%  Similarity=0.210  Sum_probs=207.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-------------------CCCceeEEEEeecCcEEEEE
Q psy9936           9 LQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-------------------VMEEVYDIKWLHLETMFAVA   69 (315)
Q Consensus         9 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~l~~~   69 (315)
                      ..+.|+|++|||||++||+|+ |+.|+|||+.+++.+..+.                   +...|.+++|+|++++|+++
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            368999999999999999986 8899999999888765543                   34569999999999999988


Q ss_pred             e-CCeEEEEeCCCCE-EEEe-ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCE
Q psy9936          70 Q-KDWVYIYDNQGIE-LHCL-KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNAC  146 (315)
Q Consensus        70 ~-~~~i~i~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~  146 (315)
                      + |+.|++|+..... +... .|...|.++.|++++..+++++.++.+++||+.+.........+...+....+.+++++
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY  219 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCe
Confidence            7 8999999995543 3333 35689999999999999999999999999999988887777655554444444558899


Q ss_pred             EEEEcCCCeEEEEcCCCCcceeEee-------cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCC----------
Q psy9936         147 ICLGHRNGTVTMWSPTVQKPLASLL-------CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP----------  209 (315)
Q Consensus       147 l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~----------  209 (315)
                      |++|+.|+.|++||.+++..+..+.       +|...|.+++|+|++++|++++.|+.|++||+++. ..          
T Consensus       220 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~  298 (388)
T d1erja_         220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA-NNKSDSKTPNSG  298 (388)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------
T ss_pred             EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC-cccccccccccc
Confidence            9999999999999999887665543       57889999999999999999999999999999865 22          


Q ss_pred             --eeEeccCC-CceeEEEccCCeEE--EEcCCEEEecCC----------------------CceeecccccccccCCcch
Q psy9936         210 --LNTFRTRT-PINNLAFSQRGLLA--TSRGNIVEFLKP----------------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       210 --~~~~~~~~-~v~~~~~s~~g~~~--~~~~~~i~~~~~----------------------~~~~~~~~~~~~~~~~~~~  262 (315)
                        ......|. .|.+++|+|+|.++  ++.|+.|++|+.                      ....|+|++.++++|+.|+
T Consensus       299 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             ceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence              12222333 68999999999543  446899999976                      2335789999999999999


Q ss_pred             hhhhhh
Q psy9936         263 RAKVKK  268 (315)
Q Consensus       263 ~~~~~~  268 (315)
                      .++.++
T Consensus       379 ~I~iW~  384 (388)
T d1erja_         379 KARIWK  384 (388)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            887764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=241.68  Aligned_cols=233  Identities=15%  Similarity=0.246  Sum_probs=195.0

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEE-EE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIEL-HC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~-~~   86 (315)
                      ...|++++|+|+|++|++|+.||.|++|+...++....+. |...|.++.|++++..+++++ ++.+++||...... ..
T Consensus       121 ~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  200 (388)
T d1erja_         121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  200 (388)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc
Confidence            5669999999999999999999999999999999888777 889999999999988887776 78999999965443 34


Q ss_pred             eecCCceEEEEEcC-CCceEEEEcCCCeEEEEEccCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          87 LKVLNKVTRMEFLP-YHFLLATASEEGYLSWLDTSIGKIVSDF-------SAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        87 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      ..+.....++.+++ ++.+|++++.|+.|++||+.++.....+       .+|...|.+++|+|++++|++++.|+.|++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i  280 (388)
T d1erja_         201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  280 (388)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEE
Confidence            45556666666665 6889999999999999999988776654       357888999999999999999999999999


Q ss_pred             EcCCCCcc------------eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEE--
Q psy9936         159 WSPTVQKP------------LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLA--  223 (315)
Q Consensus       159 ~d~~~~~~------------~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~--  223 (315)
                      ||++++..            ......|...|.+++|+|+|++|++|+.||.|++||++++ +++..+..|. .|.+++  
T Consensus       281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEC
T ss_pred             EeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEEe
Confidence            99876532            3344568899999999999999999999999999999999 9999999877 577776  


Q ss_pred             ----EccCCeEEE--EcCCEEEecCC
Q psy9936         224 ----FSQRGLLAT--SRGNIVEFLKP  243 (315)
Q Consensus       224 ----~s~~g~~~~--~~~~~i~~~~~  243 (315)
                          |+|++.+++  +.|++|++|+.
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEee
Confidence                467885443  45999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-33  Score=230.18  Aligned_cols=237  Identities=15%  Similarity=0.228  Sum_probs=210.7

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-   80 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-   80 (315)
                      ..+.. ...|.+++|+|++.+++++..++.+.+|+....+....+. +...+.++.|+|++..++++. |+.+++|++. 
T Consensus        53 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  132 (317)
T d1vyhc1          53 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  132 (317)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc
Confidence            34555 7889999999999999999999999999998887776665 788899999999998888776 8999999995 


Q ss_pred             CCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC---------------
Q psy9936          81 GIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN---------------  144 (315)
Q Consensus        81 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~---------------  144 (315)
                      +.....+. +...+.+++|+|++.+|++++.|+.|++|++.+++....+..|...+..++|+|++               
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  212 (317)
T d1vyhc1         133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK  212 (317)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred             ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeee
Confidence            44444444 55789999999999999999999999999999999999999999999999998764               


Q ss_pred             -----CEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-C
Q psy9936         145 -----ACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-P  218 (315)
Q Consensus       145 -----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~  218 (315)
                           .++++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.||.|++||+.++ +++..+..|. +
T Consensus       213 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~  291 (317)
T d1vyhc1         213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHF  291 (317)
T ss_dssp             ----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSC
T ss_pred             eccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEEcCCCCC
Confidence                 46889999999999999999999999999999999999999999999999999999999998 8999998876 7


Q ss_pred             ceeEEEccCCe--EEEEcCCEEEecC
Q psy9936         219 INNLAFSQRGL--LATSRGNIVEFLK  242 (315)
Q Consensus       219 v~~~~~s~~g~--~~~~~~~~i~~~~  242 (315)
                      |++++|+|++.  +.++.|++|++|+
T Consensus       292 V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         292 VTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999984  3445689999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-33  Score=236.98  Aligned_cols=201  Identities=13%  Similarity=0.159  Sum_probs=168.5

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe--c-CCCceeEEEEeecCcEEEEEe-CCeEEEEe
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM--N-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYD   78 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~   78 (315)
                      +..+.. ..+|.+++|+|++++|++++.|+.|+|||+.++.....+  . +...|.+++|+|+++.|++++ ++.+++|+
T Consensus        44 ~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~  123 (371)
T d1k8kc_          44 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY  123 (371)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeee
Confidence            344555 789999999999999999999999999999887654443  2 678899999999999998886 88999998


Q ss_pred             CCC--CEEEE--e--ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCC------------------eEEEEeccCCCC
Q psy9936          79 NQG--IELHC--L--KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG------------------KIVSDFSAKKGK  134 (315)
Q Consensus        79 ~~~--~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------------~~~~~~~~~~~~  134 (315)
                      .+.  .....  .  .+...|.+++|+|++.+|++++.|+.+++||+...                  ........|...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (371)
T d1k8kc_         124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW  203 (371)
T ss_dssp             EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred             eecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCc
Confidence            732  22111  1  24578999999999999999999999999997642                  355666788899


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       135 v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      +.+++|+|+|++|++++.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++|+ |+.+++|....
T Consensus       204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             EEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence            99999999999999999999999999999999999999999999999999998887654 77777776544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=230.99  Aligned_cols=233  Identities=12%  Similarity=0.177  Sum_probs=187.8

Q ss_pred             CCcEEEEEEcC--CCCEEEEEcCCCeEEEEEccCceE--------EEEec-CCCceeEEEEeecCcEEEEEe---CCeEE
Q psy9936          10 QFGIYRMNYTK--NGRHLLLGGKRGHVAAFDWVRKTL--------ACEMN-VMEEVYDIKWLHLETMFAVAQ---KDWVY   75 (315)
Q Consensus        10 ~~~v~~~~~s~--~~~~l~~~~~dg~i~v~~~~~~~~--------~~~~~-~~~~v~~~~~~~~~~~l~~~~---~~~i~   75 (315)
                      ...|++++|+|  +|.+|++|+.||+|+|||+..++.        ...+. +..+|.+++|+++++++++++   ++.+.
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~  142 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV  142 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEE
Confidence            35799999998  668999999999999999865432        11222 678899999999999887765   46799


Q ss_pred             EEeCC-CCEEEEee-cCCceEEEEEcCCCce-EEEEcCCCeEEEEEccCCeEEEEe---ccCCCCeEEEEEcCC-CCEEE
Q psy9936          76 IYDNQ-GIELHCLK-VLNKVTRMEFLPYHFL-LATASEEGYLSWLDTSIGKIVSDF---SAKKGKLSVMTQNPY-NACIC  148 (315)
Q Consensus        76 i~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~p~-~~~l~  148 (315)
                      +|+.+ +..+..+. |...|.+++|+|++.+ +++++.|+.+++||+...+....+   ..|...|.+++|+|+ +.+|+
T Consensus       143 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             EEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence            99985 45555554 5688999999999865 678899999999999887766554   356778999999996 67999


Q ss_pred             EEcCCCeEEEEcCCCCcceeEeecccccEEEEEEC---CCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC---ce--
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVN---HTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP---IN--  220 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s---p~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---v~--  220 (315)
                      +++.|+.|++||+++++.+..+.+|..++.++.|+   |+|++|++++.|+.|+|||++++ +++..+..+..   +.  
T Consensus       223 s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  301 (325)
T d1pgua1         223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQV  301 (325)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGGCEE
T ss_pred             ccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEEEEecCCcccCeEE
Confidence            99999999999999999999999888777655555   78999999999999999999998 88888776542   33  


Q ss_pred             eEEEccCCeEE-EEcCCEEEecCC
Q psy9936         221 NLAFSQRGLLA-TSRGNIVEFLKP  243 (315)
Q Consensus       221 ~~~~s~~g~~~-~~~~~~i~~~~~  243 (315)
                      ++.|.+++.++ ++.|+.|++|++
T Consensus       302 ~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEECCCCEEEEEECCCEEEEEEC
Confidence            45566666554 456999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-32  Score=229.03  Aligned_cols=255  Identities=12%  Similarity=0.150  Sum_probs=187.7

Q ss_pred             cEEEeeC-CCcE-EEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEeCCeEEEEeC
Q psy9936           3 KQFDLDL-QFGI-YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQKDWVYIYDN   79 (315)
Q Consensus         3 ~~~~~~~-~~~v-~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~   79 (315)
                      ++..|++ ...| +|++|  ++++||+|+.||+|+|||+.+++.+..+. |.++|.+++|+|++.+++++.|+.|++|+.
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEET
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccc
Confidence            3556777 4554 66555  67899999999999999999999999988 899999999999775555556999999998


Q ss_pred             CCCEEEEee-cC---CceEEEEEcCCCceEEEEcCCCeEEEEE-------------------------------------
Q psy9936          80 QGIELHCLK-VL---NKVTRMEFLPYHFLLATASEEGYLSWLD-------------------------------------  118 (315)
Q Consensus        80 ~~~~~~~~~-~~---~~v~~~~~~~~~~~l~~~~~d~~i~~~d-------------------------------------  118 (315)
                      ......... ..   .......+++++.++++++.|+.|++||                                     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            554332211 11   1223344445555555555555555555                                     


Q ss_pred             --------------------------ccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec
Q psy9936         119 --------------------------TSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC  172 (315)
Q Consensus       119 --------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  172 (315)
                                                +.+++.+.....+...+.++.|+|++.++++++.|+.|++||++++..+..+.+
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  241 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  241 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence                                      444444555555667788899999999999999999999999999999999999


Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCcee-EEEccCCe-EEEEcCCEEEecCC-------
Q psy9936         173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINN-LAFSQRGL-LATSRGNIVEFLKP-------  243 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~g~-~~~~~~~~i~~~~~-------  243 (315)
                      |...|.+++|++  ++|++++.||.|++||+++. ....... +..+.. ..+++++. ++++.|+.|++|++       
T Consensus       242 h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         242 HTALVGLLRLSD--KFLVSAAADGSIRGWDANDY-SRKFSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             CSSCCCEEEECS--SEEEEECTTSEEEEEETTTC-CEEEEEE-CTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC
T ss_pred             cccccccccccc--ceeeeeeccccccccccccc-ceecccc-cCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence            999999999874  69999999999999999887 4433332 234444 45677775 55567999999986       


Q ss_pred             ----------CceeecccccccccCCcchhh
Q psy9936         244 ----------PEINFEPRRKANKAGGSVQRA  264 (315)
Q Consensus       244 ----------~~~~~~~~~~~~~~~~~~~~~  264 (315)
                                .+++|+|+. .+++++.++..
T Consensus       318 ~~~~~~~~~V~~v~~~~~~-~~~~~s~dg~~  347 (355)
T d1nexb2         318 ANILKDADQIWSVNFKGKT-LVAAVEKDGQS  347 (355)
T ss_dssp             SCTTTTCSEEEEEEEETTE-EEEEEESSSCE
T ss_pred             EEecCCCCCEEEEEEcCCe-EEEEEECCCcE
Confidence                      467788764 56666666543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-31  Score=222.83  Aligned_cols=224  Identities=15%  Similarity=0.229  Sum_probs=185.2

Q ss_pred             eEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCC-CCEEEEee-cCCceEEEEEcCCCceEEEEcCCCeEEEEE
Q psy9936          43 TLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ-GIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLD  118 (315)
Q Consensus        43 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  118 (315)
                      +..+++. |.++|++++|+|++.+|++++ ||.|++||+. +..+..+. |..+|.+++|+|++.++++++.|+.+.+|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            3455666 999999999999999999887 8999999995 44444554 568899999999999999999999999998


Q ss_pred             ccCC----eEEEEec-----------------------------------------cCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936         119 TSIG----KIVSDFS-----------------------------------------AKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus       119 ~~~~----~~~~~~~-----------------------------------------~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                      ....    .....+.                                         .+...+....+.+.+.++++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            6542    1111111                                         233446677788889999999999


Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC---CCceeEEEccCCeE
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR---TPINNLAFSQRGLL  230 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~  230 (315)
                      +.|++||+++++++..+.+|...|++++|+|++.+|++|+.|+.|++||+... ..+..+...   .++.+++|+|++.+
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc-ccccccccccccCceEEEEECCCCCE
Confidence            99999999999999999999999999999999999999999999999999987 666655432   36899999999954


Q ss_pred             E--EEcCCEEEecCC----------------CceeecccccccccCCcchhhhhh
Q psy9936         231 A--TSRGNIVEFLKP----------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       231 ~--~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                      +  ++.|+.|++|+.                ++++|+|++.++++|+.|+.++.+
T Consensus       285 l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            3  345899999976                678999999999999998877654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-31  Score=219.71  Aligned_cols=252  Identities=10%  Similarity=0.105  Sum_probs=199.0

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      ..|++ .+.|.+ +++++|++||+|+.||+|+|||+.+++++..+. |...|.+++|+|+  +|++++ |+.+++|+...
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccc
Confidence            34666 667754 467789999999999999999999999999888 8899999999875  566554 89999999754


Q ss_pred             CEEEEeecC----------------------------------------CceEEEEEcCCCceEEEEcCCCeEEEEEccC
Q psy9936          82 IELHCLKVL----------------------------------------NKVTRMEFLPYHFLLATASEEGYLSWLDTSI  121 (315)
Q Consensus        82 ~~~~~~~~~----------------------------------------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  121 (315)
                      .........                                        .......+.+....+++++.|+.+++||+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence            322111100                                        0001122333455788899999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEE
Q psy9936         122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW  201 (315)
Q Consensus       122 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iw  201 (315)
                      ...+..+.+|...+..+  ++++.++++++.||.|++||++.++++..+.+|...+.++++++  ++|++++.|+.|++|
T Consensus       167 ~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iw  242 (342)
T d2ovrb2         167 ETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIW  242 (342)
T ss_dssp             TEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred             ceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEE
Confidence            99999998888766555  45788999999999999999999999999999999998887764  699999999999999


Q ss_pred             EccCCCCCeeEeccCC----CceeEEEccCCeEEEEcCCEEEecCC---------------------Cceeecccccccc
Q psy9936         202 DVRNLEGPLNTFRTRT----PINNLAFSQRGLLATSRGNIVEFLKP---------------------PEINFEPRRKANK  256 (315)
Q Consensus       202 d~~~~~~~~~~~~~~~----~v~~~~~s~~g~~~~~~~~~i~~~~~---------------------~~~~~~~~~~~~~  256 (315)
                      |+... +....+..+.    .+.++.++++..+.++.|++|++|++                     ++++|+|++..++
T Consensus       243 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         243 DIKTG-QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             ETTTC-CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             ecccc-cccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence            99987 7666665432    46777787776677788999999986                     4678999999999


Q ss_pred             cCCcchhh
Q psy9936         257 AGGSVQRA  264 (315)
Q Consensus       257 ~~~~~~~~  264 (315)
                      +|+.++..
T Consensus       322 ~g~~dGt~  329 (342)
T d2ovrb2         322 VGSRNGTE  329 (342)
T ss_dssp             EECSSSSS
T ss_pred             EEeCCCCC
Confidence            99887753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-31  Score=220.44  Aligned_cols=257  Identities=9%  Similarity=0.062  Sum_probs=194.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCC-eEEEEEccCce--EEEEec-C-CCceeEEEEee--cCcEEEEEe-CCeEEEEeCCC
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRG-HVAAFDWVRKT--LACEMN-V-MEEVYDIKWLH--LETMFAVAQ-KDWVYIYDNQG   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg-~i~v~~~~~~~--~~~~~~-~-~~~v~~~~~~~--~~~~l~~~~-~~~i~i~~~~~   81 (315)
                      ...+++++|+|+|+.|++++.+. .|+.|+.....  ....+. | ...|++++|+|  ++.+|++++ ||+|++||+..
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            44667899999999999876553 35556544332  233443 4 46799999998  568998886 89999999732


Q ss_pred             ----CEEE------EeecCCceEEEEEcCCCceEEEEcC--CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCE-EE
Q psy9936          82 ----IELH------CLKVLNKVTRMEFLPYHFLLATASE--EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNAC-IC  148 (315)
Q Consensus        82 ----~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~  148 (315)
                          ....      ...+..+|.+++|++++.++++++.  ++.+.+|+..+++.+..+.+|...|.+++|+|++.+ ++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM  176 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEE
Confidence                1111      1224578999999999998887754  677999999999999999999999999999999875 67


Q ss_pred             EEcCCCeEEEEcCCCCcceeEee---cccccEEEEEECCC-CCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEE
Q psy9936         149 LGHRNGTVTMWSPTVQKPLASLL---CHKAGIQSVAVNHT-GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLA  223 (315)
Q Consensus       149 ~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~sp~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~  223 (315)
                      +++.|+.+++||..+.+....+.   .|...|.+++|+|+ +.+|++++.|+.|++||++++ +++..+..|. ++..+.
T Consensus       177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~  255 (325)
T d1pgua1         177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGI  255 (325)
T ss_dssp             EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCE
T ss_pred             EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc-cccccccccccccccce
Confidence            89999999999998876655543   56788999999997 689999999999999999998 8888888765 455555


Q ss_pred             Ec---cCCe--EEEEcCCEEEecCC------------------Cceeeccc-ccccccCCcchhhhhh
Q psy9936         224 FS---QRGL--LATSRGNIVEFLKP------------------PEINFEPR-RKANKAGGSVQRAKVK  267 (315)
Q Consensus       224 ~s---~~g~--~~~~~~~~i~~~~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~  267 (315)
                      |+   |+|.  +.++.|+.|++|++                  ..+++.+. +..+++++.++.++.+
T Consensus       256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vw  323 (325)
T d1pgua1         256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY  323 (325)
T ss_dssp             EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEE
Confidence            55   5663  44556999999987                  12234333 2356777777766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-30  Score=213.90  Aligned_cols=229  Identities=12%  Similarity=0.149  Sum_probs=177.0

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC--
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG--   81 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~--   81 (315)
                      ..+.+ ..+|++++|+|    |++|+.||+|++||+.++.    ..|...|.++.|++++.++.++.|+++++|++..  
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~   78 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE   78 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecCCCeEEEEeeccccccccccccc
Confidence            45666 89999999997    8999999999999987643    2467778888887776665555577787776421  


Q ss_pred             ---------------------------------CEEEEeecCCceEEEEEcCCCceEEEEcCCC-eEEEEEccCCeEEEE
Q psy9936          82 ---------------------------------IELHCLKVLNKVTRMEFLPYHFLLATASEEG-YLSWLDTSIGKIVSD  127 (315)
Q Consensus        82 ---------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~  127 (315)
                                                       ..+..+....  ...+++|++..+++++.++ .+++|++...+....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~  156 (287)
T d1pgua2          79 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD  156 (287)
T ss_dssp             CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc--eeeeeeccCcceeeeccccceeeeeeccccceeee
Confidence                                             1111111112  2345667777787777765 699999876665555


Q ss_pred             ec-cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCccee-EeecccccEEEEEECCC----------CCEEEEeeCC
Q psy9936         128 FS-AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA-SLLCHKAGIQSVAVNHT----------GTYMATSAGD  195 (315)
Q Consensus       128 ~~-~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~sp~----------g~~l~~~~~d  195 (315)
                      +. .|...+++++|+|++.+|++|+.||.|++||+.+++... .+.+|..+|.+++|+|+          +.+|++|+.|
T Consensus       157 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D  236 (287)
T d1pgua2         157 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  236 (287)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             eeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence            44 467789999999999999999999999999999887654 45689999999999975          4689999999


Q ss_pred             CcEEEEEccCCCCCeeEeccCC-CceeEEEccCCe-EEEEcCCEEEecCC
Q psy9936         196 SQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       196 ~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      ++|++||+++....+..+..|. +|++++|+|++. +.++.|+.|++|++
T Consensus       237 ~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            9999999987546777777776 699999999995 55667999999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-30  Score=216.61  Aligned_cols=233  Identities=12%  Similarity=0.105  Sum_probs=166.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce----EEEEecCCCceeEEEEeec-CcEEEEEe-CCeEEEEeCCCC-
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT----LACEMNVMEEVYDIKWLHL-ETMFAVAQ-KDWVYIYDNQGI-   82 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~~~i~i~~~~~~-   82 (315)
                      .+.|++++|+|++++||+|+.||+|+|||+.++.    ....+.|..+|.+++|+|+ +.+|++++ |+.|++|+.... 
T Consensus        11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~   90 (342)
T d1yfqa_          11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc
Confidence            7889999999999999999999999999987543    3344458999999999997 45677765 899999998543 


Q ss_pred             EEEEee-cC-CceEEEEEcCCCceEEEEcCCCeEEEEEccCCe----EEEEeccC--CCCeEEEEEcCCCCEEEEEcCCC
Q psy9936          83 ELHCLK-VL-NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK----IVSDFSAK--KGKLSVMTQNPYNACICLGHRNG  154 (315)
Q Consensus        83 ~~~~~~-~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~d~  154 (315)
                      ...... +. .......+.++...+++++.++.+.+||++.+.    .......+  ......+.+.+.+..+++++.|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  170 (342)
T d1yfqa_          91 SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS  170 (342)
T ss_dssp             SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTT
T ss_pred             ccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCC
Confidence            333322 22 344556667778899999999999999986432    22222211  11233344555566666666666


Q ss_pred             eEEEEcCCCCcce----------------------------------------------------e---------Eeecc
Q psy9936         155 TVTMWSPTVQKPL----------------------------------------------------A---------SLLCH  173 (315)
Q Consensus       155 ~i~i~d~~~~~~~----------------------------------------------------~---------~~~~~  173 (315)
                      .|++||++.....                                                    .         ....|
T Consensus       171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
T d1yfqa_         171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL  250 (342)
T ss_dssp             EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred             cEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc
Confidence            6666665432210                                                    0         01124


Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCC--eEEEEcCCEEEecCC
Q psy9936         174 KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG--LLATSRGNIVEFLKP  243 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g--~~~~~~~~~i~~~~~  243 (315)
                      ...+++++|+|++.+||+|+.||.|++||+.++ +.+..+..+.++..++|+|+|  ++++++|++++.|..
T Consensus       251 ~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~-~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             cccceeEEecCCccEEEEECCCCEEEEEECCCC-cEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            456889999999999999999999999999998 888887766666677778877  456677888887765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-28  Score=199.54  Aligned_cols=247  Identities=11%  Similarity=0.196  Sum_probs=193.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~   87 (315)
                      ..+|+|++  +||++||+|+.||+|+|||+.+++++..+. |...|.+++|  ++++|++++ |+.|++|++........
T Consensus        15 ~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          15 SKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             CCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             CCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence            67898865  578999999999999999999999999988 8899999887  567888776 89999999965544443


Q ss_pred             ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCC
Q psy9936          88 KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK---IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ  164 (315)
Q Consensus        88 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~  164 (315)
                      ..........+.+....++++..++.+.+||.....   ....+..|...+..+.+.+  ..+++++.|+.|++||++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2          91 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC
T ss_pred             ccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCC
Confidence            333333444556667788999999999999988654   3445567888888777654  56888999999999999999


Q ss_pred             cceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCC-ceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-INNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       165 ~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +++..+.++...+..+.++  +.++++++.|+.|++||+++. ..+..+..+.. +..+.+.+.-++.++.|+.|++|+.
T Consensus       169 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         169 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred             cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc-eeeeeecccceeeeeccccceEEEEEcCCCEEEEEEC
Confidence            9999999999998887775  568999999999999999998 88887777664 4443333222445567999999853


Q ss_pred             -------------------------CceeecccccccccCCcchhhhhh
Q psy9936         244 -------------------------PEINFEPRRKANKAGGSVQRAKVK  267 (315)
Q Consensus       244 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~  267 (315)
                                               ++++|  ++.++++++.|+.++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW  292 (293)
T ss_dssp             HHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred             CCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEe
Confidence                                     34555  56789999999877653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-28  Score=211.81  Aligned_cols=249  Identities=11%  Similarity=0.115  Sum_probs=181.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCce-------EEEEecCCCceeEEEEe---e----cCcEEEEEe-CCeE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKT-------LACEMNVMEEVYDIKWL---H----LETMFAVAQ-KDWV   74 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-------~~~~~~~~~~v~~~~~~---~----~~~~l~~~~-~~~i   74 (315)
                      ...|+++++++  +++++++.|++|+|||..+..       ......+...+..+...   +    ++.++++++ ||.|
T Consensus        14 ~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v   91 (393)
T d1sq9a_          14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   91 (393)
T ss_dssp             SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             cCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcE
Confidence            78999999875  699999999999999976543       22223344444333322   1    234555555 8999


Q ss_pred             EEEeCCC----CEEEE--ee------cCCceEEEEEcCC-----CceEEEEcCCCeEEEEEccCCe--------------
Q psy9936          75 YIYDNQG----IELHC--LK------VLNKVTRMEFLPY-----HFLLATASEEGYLSWLDTSIGK--------------  123 (315)
Q Consensus        75 ~i~~~~~----~~~~~--~~------~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~--------------  123 (315)
                      ++|++..    .....  ..      +...+..++|.++     +.++++++.||++.+|++....              
T Consensus        92 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  171 (393)
T d1sq9a_          92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL  171 (393)
T ss_dssp             EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred             EEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccce
Confidence            9998621    11111  11      2256778888776     4688999999999999985320              


Q ss_pred             ----EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEe------ecccccEEEEEECCCCCEEEEee
Q psy9936         124 ----IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASL------LCHKAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       124 ----~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~~sp~g~~l~~~~  193 (315)
                          .......+...+.+++|+|++ +|++|+.|++|++||+++++++..+      .+|..+|++++|+|+|++|++|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs  250 (393)
T d1sq9a_         172 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH  250 (393)
T ss_dssp             EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             ecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeec
Confidence                111122345568899999998 8899999999999999998776554      46889999999999999999999


Q ss_pred             CCCc---EEEEEccCCCCCeeEec-------------cCC-CceeEEEccCCeEEE--EcCCEEEecCC-----------
Q psy9936         194 GDSQ---LRIWDVRNLEGPLNTFR-------------TRT-PINNLAFSQRGLLAT--SRGNIVEFLKP-----------  243 (315)
Q Consensus       194 ~d~~---i~iwd~~~~~~~~~~~~-------------~~~-~v~~~~~s~~g~~~~--~~~~~i~~~~~-----------  243 (315)
                      .|++   |++||+.++ .++..+.             +|. .|++++|+|||.+++  +.|++|++|+.           
T Consensus       251 ~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         251 DSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             EETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcceeeecccccc-eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC
Confidence            9874   999999988 7666653             344 599999999996444  45899999987           


Q ss_pred             ---------CceeecccccccccCCcch
Q psy9936         244 ---------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       244 ---------~~~~~~~~~~~~~~~~~~~  262 (315)
                               ..+.|+|++..+++++...
T Consensus       330 H~~~v~~~~~~~~~~~~~~~~~~~~~~~  357 (393)
T d1sq9a_         330 HCDDIEIEEDILAVDEHGDSLAEPGVFD  357 (393)
T ss_dssp             CGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred             cCCcccCCccEEEECCCCCEEEEcccce
Confidence                     2467888888888776443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.1e-28  Score=203.42  Aligned_cols=225  Identities=12%  Similarity=0.076  Sum_probs=171.8

Q ss_pred             ceEEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC-CEEEEee--cCCceEEEEEcCCCceEEEEcCCCeEEE
Q psy9936          42 KTLACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG-IELHCLK--VLNKVTRMEFLPYHFLLATASEEGYLSW  116 (315)
Q Consensus        42 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~  116 (315)
                      |+..+.+. |..+|++++|+|++++|++++ |+.|++||+.+ .....+.  |...|.+++|+|++.+ ++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            45566666 999999999999999999886 89999999954 5454443  4578999999999875 45667899999


Q ss_pred             EEccCCe--------------EE-------------------EEe-------ccCCCCeEEEEEcCCCCEEEEEcCCCeE
Q psy9936         117 LDTSIGK--------------IV-------------------SDF-------SAKKGKLSVMTQNPYNACICLGHRNGTV  156 (315)
Q Consensus       117 ~d~~~~~--------------~~-------------------~~~-------~~~~~~v~~~~~~p~~~~l~~~~~d~~i  156 (315)
                      |+.....              ..                   ..+       ......+.+++|+|++++|++|+.|+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9864310              00                   000       0122346788999999999999999999


Q ss_pred             EEEcCCCCccee-EeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCee---EeccCC-CceeEEEccCCeEE
Q psy9936         157 TMWSPTVQKPLA-SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLN---TFRTRT-PINNLAFSQRGLLA  231 (315)
Q Consensus       157 ~i~d~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~-~v~~~~~s~~g~~~  231 (315)
                      ++||+++++... ....|..+|++++|+|++.+|++++.|+.|++||+.++ ..+.   .+..|. +|++++|+|++.++
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-FELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-TEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccce
Confidence            999998776443 33468999999999999999999999999999999876 4333   333444 69999999999644


Q ss_pred             E--EcCCEEEecCC------------------CceeecccccccccCCcchhhhhhh
Q psy9936         232 T--SRGNIVEFLKP------------------PEINFEPRRKANKAGGSVQRAKVKK  268 (315)
Q Consensus       232 ~--~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~  268 (315)
                      +  +.|+.|++|++                  ....+++++.++++++.|+.++.+.
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEe
Confidence            3  46899999976                  1223456778888999888877654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.1e-30  Score=218.56  Aligned_cols=210  Identities=17%  Similarity=0.277  Sum_probs=164.5

Q ss_pred             CEEEEEcCCCeEEEEEccCceE----E-EEec------CCCceeEEEEeec-----CcEEEEEe-CCeEEEEeCCC----
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTL----A-CEMN------VMEEVYDIKWLHL-----ETMFAVAQ-KDWVYIYDNQG----   81 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~----~-~~~~------~~~~v~~~~~~~~-----~~~l~~~~-~~~i~i~~~~~----   81 (315)
                      .++++++.||.|++|++.....    . ....      +...+..++|.++     +.++++++ |+.+.+|++..    
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            4678899999999998754321    1 1111      3345778888775     35566554 99999999621    


Q ss_pred             ---------CE--EEE-e----ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe------ccCCCCeEEEE
Q psy9936          82 ---------IE--LHC-L----KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF------SAKKGKLSVMT  139 (315)
Q Consensus        82 ---------~~--~~~-~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~v~~~~  139 (315)
                               ..  ... .    .+...+.+++|+|++ +|++|+.|++|++||+.+++++..+      .+|..+|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                     01  111 1    122568899999998 8899999999999999998876654      46888999999


Q ss_pred             EcCCCCEEEEEcCCC---eEEEEcCCCCcceeEee-------------cccccEEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         140 QNPYNACICLGHRNG---TVTMWSPTVQKPLASLL-------------CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       140 ~~p~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~-------------~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      |+|+|++|++|+.|+   .|++||+++++.+..+.             +|.+.|++++|+|++++|++|+.|++|+|||+
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            999999999999886   59999999988777664             79999999999999999999999999999999


Q ss_pred             cCCCCCeeEeccCC-Cc----eeEEEccCCeEEEEc
Q psy9936         204 RNLEGPLNTFRTRT-PI----NNLAFSQRGLLATSR  234 (315)
Q Consensus       204 ~~~~~~~~~~~~~~-~v----~~~~~s~~g~~~~~~  234 (315)
                      .++ +++..+..|. .|    ..++|+|+|..++++
T Consensus       319 ~~g-~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         319 KTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             TTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CCC-CEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            999 9999999886 33    468899999765543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.2e-28  Score=207.86  Aligned_cols=189  Identities=12%  Similarity=0.039  Sum_probs=161.1

Q ss_pred             EEEEEcC-CCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C--CeEEEEeCCCCEEEEe-e
Q psy9936          14 YRMNYTK-NGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K--DWVYIYDNQGIELHCL-K   88 (315)
Q Consensus        14 ~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--~~i~i~~~~~~~~~~~-~   88 (315)
                      ..-.||| ||+++|+++ +|.|++||+.++.... +.|...|.+++|+|||+.|++++ +  ..|++||..+.....+ .
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            3467999 999999886 5789999998887665 46888999999999999988765 3  3799999977665554 5


Q ss_pred             cCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc----------CCCeEEE
Q psy9936          89 VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH----------RNGTVTM  158 (315)
Q Consensus        89 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----------~d~~i~i  158 (315)
                      +...+.+++|+|++++|++++.++.+.+|++.+++....+..|...+.+++|+|+|++|+.+.          .++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence            668899999999999999999999999999999998888888988999999999999998643          4557999


Q ss_pred             EcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccC
Q psy9936         159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN  205 (315)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~  205 (315)
                      ||+.+++... +..+...+..++|+|+|++|++++.++.+.+||...
T Consensus       164 ~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         164 YDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             eccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence            9999876544 344778889999999999999999999999998654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-27  Score=199.15  Aligned_cols=231  Identities=11%  Similarity=0.169  Sum_probs=175.7

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCC---CceeEEEEeecCcEEEEEe-CCeEEEEe
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM---EEVYDIKWLHLETMFAVAQ-KDWVYIYD   78 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-~~~i~i~~   78 (315)
                      +..+.. ..+|++++|+|+ .+|++++.||.|++|+....+........   .......+.+++.++++++ |+.|++|+
T Consensus        46 ~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          46 LLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             EEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             EEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEE
Confidence            445666 789999999986 58999999999999999988776655422   2344455666777776665 77888887


Q ss_pred             CCCC---------------------------------------------------------------E-EEEe-ecCCce
Q psy9936          79 NQGI---------------------------------------------------------------E-LHCL-KVLNKV   93 (315)
Q Consensus        79 ~~~~---------------------------------------------------------------~-~~~~-~~~~~v   93 (315)
                      +...                                                               . +... .+...+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  204 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI  204 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccc
Confidence            6321                                                               0 0001 122556


Q ss_pred             EEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc
Q psy9936          94 TRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH  173 (315)
Q Consensus        94 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  173 (315)
                      .++.|+|++..+++++.|+.|++||+.++..+..+.+|...|.++++++  ++|++|+.||.|++||+++....  +..|
T Consensus       205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~  280 (355)
T d1nexb2         205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYH  280 (355)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEE
T ss_pred             ccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeeccccccccccccccee--cccc
Confidence            7888999999999999999999999999999999999999999999864  68999999999999999977543  4456


Q ss_pred             cccEEEE-EECCCCCEEEEeeCCCcEEEEEccCCCCCeeE-eccCC-CceeEEEccCCeEEE-EcCCEEEec
Q psy9936         174 KAGIQSV-AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT-FRTRT-PINNLAFSQRGLLAT-SRGNIVEFL  241 (315)
Q Consensus       174 ~~~i~~~-~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~-~v~~~~~s~~g~~~~-~~~~~i~~~  241 (315)
                      ...+.++ .++|++.+|++| .|+.|+|||++++ +++.. +..|. +|++++|+|+..+++ +.||.+.+|
T Consensus       281 ~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg-~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         281 HTNLSAITTFYVSDNILVSG-SENQFNIYNLRSG-KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE  350 (355)
T ss_dssp             CTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTC-CBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCC-CEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEE
Confidence            6666655 456777777665 5889999999998 77653 45554 699999999876554 458886655

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-25  Score=184.67  Aligned_cols=231  Identities=13%  Similarity=0.126  Sum_probs=168.0

Q ss_pred             EEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCCceeE--------------------------
Q psy9936           5 FDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VMEEVYD--------------------------   56 (315)
Q Consensus         5 ~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~v~~--------------------------   56 (315)
                      ..+.. ..+|.+++|+|+  +|++++.|+.+++|+........... ....+..                          
T Consensus        51 ~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  128 (342)
T d2ovrb2          51 RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ  128 (342)
T ss_dssp             EECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC
T ss_pred             EEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccc
Confidence            34455 788999999975  99999999999999987665433322 1111111                          


Q ss_pred             ------------EEEeecCcEEE-EEeCCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCe
Q psy9936          57 ------------IKWLHLETMFA-VAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGK  123 (315)
Q Consensus        57 ------------~~~~~~~~~l~-~~~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  123 (315)
                                  ..+.+....++ .+.++.|++||...................+++++.++++++.||.|++||++.++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~  208 (342)
T d2ovrb2         129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN  208 (342)
T ss_dssp             EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred             ceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce
Confidence                        11122222333 33478888888754333222112223344556678899999999999999999999


Q ss_pred             EEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeec---ccccEEEEEECCCCCEEEEeeCCCcEEE
Q psy9936         124 IVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC---HKAGIQSVAVNHTGTYMATSAGDSQLRI  200 (315)
Q Consensus       124 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~~~~~d~~i~i  200 (315)
                      .+..+..|...+.++++++  ++|++++.|+.|++||+...+....+..   |...+.++.++  ++++++|+.||+|++
T Consensus       209 ~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~i  284 (342)
T d2ovrb2         209 CIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL  284 (342)
T ss_dssp             EEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred             eeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEE
Confidence            9999999999998887764  6999999999999999998887777764   55677777665  569999999999999


Q ss_pred             EEccCCCCCeeEecc-----CC-CceeEEEccCCeEEEEc--CC----EEEecC
Q psy9936         201 WDVRNLEGPLNTFRT-----RT-PINNLAFSQRGLLATSR--GN----IVEFLK  242 (315)
Q Consensus       201 wd~~~~~~~~~~~~~-----~~-~v~~~~~s~~g~~~~~~--~~----~i~~~~  242 (315)
                      ||++++ +++..+..     |. .|++++|+|++.+++++  ||    .|++|+
T Consensus       285 wd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         285 WDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EECCCC-CEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence            999998 88777642     22 58999999999766654  45    477887

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-24  Score=177.37  Aligned_cols=231  Identities=14%  Similarity=0.205  Sum_probs=179.7

Q ss_pred             EEEeeC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCC
Q psy9936           4 QFDLDL-QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGI   82 (315)
Q Consensus         4 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~   82 (315)
                      +..+.. ..+|++++|  ++++|++|+.|+.|++|++..+..................+.+.+++...++.+.+|+....
T Consensus        48 ~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (293)
T d1p22a2          48 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP  125 (293)
T ss_dssp             EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             EEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccc
Confidence            344555 788988876  57899999999999999999988777666444444333344455555556899999998432


Q ss_pred             E----EEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEE
Q psy9936          83 E----LHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVT  157 (315)
Q Consensus        83 ~----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  157 (315)
                      .    ... ..+...+..+.+.+  ..+++++.|+.+++||+.+++.+..+.++...+..+.++  +.++++++.|+.|+
T Consensus       126 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~  201 (293)
T d1p22a2         126 TDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR  201 (293)
T ss_dssp             SCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             ccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEE
Confidence            1    111 23446777776654  468888999999999999999999999998888887765  56899999999999


Q ss_pred             EEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCC--------CCCeeEeccCC-CceeEEEccCC
Q psy9936         158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL--------EGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                      +||+++.+.+..+.+|...+..  +++++.+|++|+.||.|++||+...        ..++..+..|. +|++++|++.-
T Consensus       202 i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~  279 (293)
T d1p22a2         202 LWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ  279 (293)
T ss_dssp             EEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSC
T ss_pred             EEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCE
Confidence            9999999999999888888765  5577889999999999999998643        13456667776 69999997765


Q ss_pred             eEEEEcCCEEEecC
Q psy9936         229 LLATSRGNIVEFLK  242 (315)
Q Consensus       229 ~~~~~~~~~i~~~~  242 (315)
                      ++.++.|++|++|+
T Consensus       280 l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         280 IVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECCSSSEEEEEC
T ss_pred             EEEEecCCEEEEeC
Confidence            56666799999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=8.5e-26  Score=190.25  Aligned_cols=187  Identities=11%  Similarity=0.064  Sum_probs=158.4

Q ss_pred             eEEEEee-cCcEEEEEeCCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCC--eEEEEEccCCeEEEEeccC
Q psy9936          55 YDIKWLH-LETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEG--YLSWLDTSIGKIVSDFSAK  131 (315)
Q Consensus        55 ~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~  131 (315)
                      ..-.||| ||+++|++++|.|++||+.+..+..+.|...|.+++|+|||+.|++++.+.  .|++||+.+++.. .+..|
T Consensus         6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~   84 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN   84 (360)
T ss_dssp             GEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             hcccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCC
Confidence            4467999 999999999999999999888888888889999999999999988776553  6999999877654 56779


Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEee----------CCCcEEEE
Q psy9936         132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSA----------GDSQLRIW  201 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~----------~d~~i~iw  201 (315)
                      ...+.+++|+|+|++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.++          .++.+++|
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            99999999999999999999999999999999998888888999999999999999998654          34469999


Q ss_pred             EccCCCCCeeEeccCCCceeEEEccCCeE--EEEcCCEEEecCC
Q psy9936         202 DVRNLEGPLNTFRTRTPINNLAFSQRGLL--ATSRGNIVEFLKP  243 (315)
Q Consensus       202 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~~~i~~~~~  243 (315)
                      |+.++ ...........+..++|+|||..  .++.++.+..|+.
T Consensus       165 d~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         165 DMEGR-KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             ETTTT-EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ccccC-ceeeecccccccccccccCCCCEEEEEeCCCceEcccc
Confidence            99987 55555555557889999999953  3445777777764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=9.9e-23  Score=167.06  Aligned_cols=236  Identities=10%  Similarity=0.068  Sum_probs=189.6

Q ss_pred             EeeCCCcEEEEEEcCCCCEEE-EEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC-
Q psy9936           6 DLDLQFGIYRMNYTKNGRHLL-LGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG-   81 (315)
Q Consensus         6 ~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~-   81 (315)
                      .+.....+..++|+|||++|+ +++.++.|++||+.+++.+..+.....+..+.|++++..++++.  ++.+.+|+..+ 
T Consensus        27 ~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          27 TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccc
Confidence            344556789999999999874 66778999999999999998888666789999999998776654  67899999965 


Q ss_pred             CEEEEeecCCceEEEEEcCCCceEE-EEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC-CCeEEEE
Q psy9936          82 IELHCLKVLNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NGTVTMW  159 (315)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~i~  159 (315)
                      .....+.+...+.++.|+|++..++ ++..++.+.+|+..++..+..+..+ ..+..++++|++..+++++. ++.+.+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (301)
T d1l0qa2         107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVI  185 (301)
T ss_dssp             EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccc
Confidence            4456677778889999999998765 5566888999999999888877654 45788999999998777665 4678888


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeC---CCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe-E-EEE-
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG---DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL-L-ATS-  233 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~-  233 (315)
                      +....+....+. ....+..++|++++..+++++.   ++.|++||+.++ +.+..+..+..+.+++|+|||. + +++ 
T Consensus       186 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         186 DTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVGPDPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             ETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECCSSEEEEEECTTSSEEEEEET
T ss_pred             cccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcCCCCEEEEEEeCCCCEEEEEEC
Confidence            888776666655 4456788999999998776543   467999999998 8888888777899999999995 3 344 


Q ss_pred             cCCEEEecCCC
Q psy9936         234 RGNIVEFLKPP  244 (315)
Q Consensus       234 ~~~~i~~~~~~  244 (315)
                      .++.|.+|++.
T Consensus       264 ~~~~i~v~D~~  274 (301)
T d1l0qa2         264 FCNTVSVIDTA  274 (301)
T ss_dssp             TTTEEEEEETT
T ss_pred             CCCeEEEEECC
Confidence            47899999973

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.7e-24  Score=175.07  Aligned_cols=167  Identities=13%  Similarity=0.242  Sum_probs=129.1

Q ss_pred             EEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C-CeEEEEeCCCCEEEE-e--ecCCceEEEEEcCCCceEEEE
Q psy9936          34 VAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K-DWVYIYDNQGIELHC-L--KVLNKVTRMEFLPYHFLLATA  108 (315)
Q Consensus        34 i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~i~i~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~l~~~  108 (315)
                      +.+|+..+++....+.....  ..++++++..++++. + +.+++|++....... +  .+...+.+++|+|++.+|+++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  180 (287)
T d1pgua2         103 LLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG  180 (287)
T ss_dssp             EEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred             ceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccc
Confidence            33344334444444433333  345677777777665 4 579999986433322 2  244789999999999999999


Q ss_pred             cCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCC----------CEEEEEcCCCeEEEEcCCC-CcceeEeeccccc
Q psy9936         109 SEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYN----------ACICLGHRNGTVTMWSPTV-QKPLASLLCHKAG  176 (315)
Q Consensus       109 ~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~----------~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~  176 (315)
                      +.||.|++||+.++..... +..|..+|.+++|+|.+          .+|++|+.|+.|++||+++ .+.+..+.+|...
T Consensus       181 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~  260 (287)
T d1pgua2         181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG  260 (287)
T ss_dssp             ETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred             cccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC
Confidence            9999999999998876554 67899999999998754          5899999999999999977 4566777789999


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEc
Q psy9936         177 IQSVAVNHTGTYMATSAGDSQLRIWDV  203 (315)
Q Consensus       177 i~~~~~sp~g~~l~~~~~d~~i~iwd~  203 (315)
                      |++++|+|++ .|++++.|+.|++|++
T Consensus       261 V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         261 VNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999987 5889999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=2.7e-22  Score=164.38  Aligned_cols=239  Identities=14%  Similarity=0.119  Sum_probs=188.3

Q ss_pred             EEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCC-CCEEEEeecCCceEEEEEcCCC
Q psy9936          26 LLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQ-GIELHCLKVLNKVTRMEFLPYH  102 (315)
Q Consensus        26 ~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~-~~~~~~~~~~~~v~~~~~~~~~  102 (315)
                      ++++.+++|.+||+.+++.+..+.....+..++|+|||++|+++.  ++.|.+||+. +..+..+.....+..+.|++++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~   85 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG   85 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccc
Confidence            456788999999999999999998777889999999999875543  7899999995 4555566666778999999998


Q ss_pred             ceEE-EEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcCCCeEEEEcCCCCcceeEeecccccEEEE
Q psy9936         103 FLLA-TASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHRNGTVTMWSPTVQKPLASLLCHKAGIQSV  180 (315)
Q Consensus       103 ~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  180 (315)
                      ..++ ++..++.+.+|+..+++....+..+ ..+..+.|+|+|..++ ++..++.+.+|+..+...+..+.. ...+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  163 (301)
T d1l0qa2          86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGI  163 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEE
T ss_pred             ccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEE
Confidence            7555 5566788999999999888887754 4578899999999765 556688999999999988887764 4567889


Q ss_pred             EECCCCCEEEEeeCC-CcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEc---CCEEEecCC-----------
Q psy9936         181 AVNHTGTYMATSAGD-SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSR---GNIVEFLKP-----------  243 (315)
Q Consensus       181 ~~sp~g~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~---~~~i~~~~~-----------  243 (315)
                      .++|++.++++++.+ +.+.+|+.... ........+..+..++|++++.  ++++.   ++.|..|++           
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~  242 (301)
T d1l0qa2         164 AVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             Eeeccccceeeecccccccccccccce-eeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC
Confidence            999999988887765 56777777766 6666677777788999999994  34433   357888766           


Q ss_pred             ----Cceeeccccccc-ccCCcchhhhhh
Q psy9936         244 ----PEINFEPRRKAN-KAGGSVQRAKVK  267 (315)
Q Consensus       244 ----~~~~~~~~~~~~-~~~~~~~~~~~~  267 (315)
                          ..++|+|||+++ ++++.++.+...
T Consensus       243 ~~~~~~va~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         243 GPDPAGIAVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence                568999999876 566666655443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.5e-23  Score=181.33  Aligned_cols=238  Identities=11%  Similarity=0.062  Sum_probs=165.5

Q ss_pred             EEeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEE--ec----CCCceeEEEEeecCcEEEEEe--CCeEEE
Q psy9936           5 FDLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACE--MN----VMEEVYDIKWLHLETMFAVAQ--KDWVYI   76 (315)
Q Consensus         5 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~--~~----~~~~v~~~~~~~~~~~l~~~~--~~~i~i   76 (315)
                      -.+.....+..++|||||++|++++.|+.|++||+.+++....  +.    |...+.+++|+|||++++++.  ++.+.+
T Consensus        56 ~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i  135 (426)
T d1hzua2          56 KVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI  135 (426)
T ss_dssp             EEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred             EEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEE
Confidence            4455566799999999999999999999999999998875433  32    333456677888999876654  789999


Q ss_pred             EeCCCCEEE-E--------------------------------------------------------eecCCceEEEEEc
Q psy9936          77 YDNQGIELH-C--------------------------------------------------------LKVLNKVTRMEFL   99 (315)
Q Consensus        77 ~~~~~~~~~-~--------------------------------------------------------~~~~~~v~~~~~~   99 (315)
                      ||....... .                                                        +.+...+..+.|+
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            987432110 0                                                        0111334567888


Q ss_pred             CCCceEEEEc-CCCeEEEEEccCCeEEEEeccC--CCCeEEEEEcCCCC---EEEEEcCCCeEEEEcCCC-------Ccc
Q psy9936         100 PYHFLLATAS-EEGYLSWLDTSIGKIVSDFSAK--KGKLSVMTQNPYNA---CICLGHRNGTVTMWSPTV-------QKP  166 (315)
Q Consensus       100 ~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~p~~~---~l~~~~~d~~i~i~d~~~-------~~~  166 (315)
                      |++++++++. .+..+.+++..+++.+......  ........+.+.+.   ..+..+.|+.+.+|+...       ++.
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~  295 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  295 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence            8887766664 4566888999888877665432  12222233333222   222345678888887654       366


Q ss_pred             eeEeecccccEEEEEECCCCCEEEE-------eeCCCcEEEEEccCCCCCeeEec----------cCCCceeEEEccCCe
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMAT-------SAGDSQLRIWDVRNLEGPLNTFR----------TRTPINNLAFSQRGL  229 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~-------~~~d~~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~s~~g~  229 (315)
                      ...+.+|...+..++|+|+|++|++       ++.|++|+|||+.++ ++...+.          ....+.+++|||||.
T Consensus       296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~-~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT-TSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC-CcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence            7788899999999999999999995       456789999999998 6555442          122488999999995


Q ss_pred             -EEEE------cCCEEEecCC
Q psy9936         230 -LATS------RGNIVEFLKP  243 (315)
Q Consensus       230 -~~~~------~~~~i~~~~~  243 (315)
                       ++++      .++.|++|+.
T Consensus       375 ~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         375 EVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             EEEEEECCCTTSCCEEEEEET
T ss_pred             EEEEEEecCCCCCCeEEEEEC
Confidence             3232      3678999987

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.3e-23  Score=171.97  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=166.0

Q ss_pred             EEEEec-CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCC--CE---EEEeecCCceEEEEEcCC-CceEEEEcCCCeEE
Q psy9936          44 LACEMN-VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQG--IE---LHCLKVLNKVTRMEFLPY-HFLLATASEEGYLS  115 (315)
Q Consensus        44 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~--~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~  115 (315)
                      .+...+ |.+.|++++|+|++++|++++ |++|++||+..  ..   .....|..+|.+++|+|+ +.+|++|+.|+.|.
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            334444 888999999999999999887 89999999832  21   233467899999999987 46899999999999


Q ss_pred             EEEccCCeEEEEeccCCC-CeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee----cc--cccEEEEEECCCCCE
Q psy9936         116 WLDTSIGKIVSDFSAKKG-KLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL----CH--KAGIQSVAVNHTGTY  188 (315)
Q Consensus       116 ~~d~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~--~~~i~~~~~sp~g~~  188 (315)
                      +|++..+........+.. ......+.++...+++++.++.+++||++++.......    .+  ........+.+.+..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            999988776666554443 34455667788899999999999999987654333222    11  223456677888999


Q ss_pred             EEEeeCCCcEEEEEccCCCCCeeEec----cCCCceeEEEccC-C--eEEEEcCCEEEecCC------------------
Q psy9936         189 MATSAGDSQLRIWDVRNLEGPLNTFR----TRTPINNLAFSQR-G--LLATSRGNIVEFLKP------------------  243 (315)
Q Consensus       189 l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~-g--~~~~~~~~~i~~~~~------------------  243 (315)
                      +++++.|+.|++||+... .......    ....+....+.|. +  ..+++.++.+.+|..                  
T Consensus       163 ~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLC-EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEESTTEEEEEESSCC-TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             eeeecCCCcEEEEecccC-cccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            999999999999999876 4333222    1224555555554 3  355567888886643                  


Q ss_pred             -------------CceeecccccccccCCcchhhhhhhh
Q psy9936         244 -------------PEINFEPRRKANKAGGSVQRAKVKKI  269 (315)
Q Consensus       244 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (315)
                                   .+++|+|++.++++|+.++.++.+..
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence                         36899999999999999998887753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.2e-21  Score=162.95  Aligned_cols=217  Identities=10%  Similarity=0.003  Sum_probs=166.4

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEE-e-CCeEEEEeCCC-CEEEEeecC------
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVA-Q-KDWVYIYDNQG-IELHCLKVL------   90 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~-~~~i~i~~~~~-~~~~~~~~~------   90 (315)
                      +|+++++.|++|+|||+.+++.+..+.   +...+.+++|+|||++++++ . ++.|.+||+.+ +.+..+...      
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            489999999999999999999988876   23457899999999987544 3 78999999954 444444322      


Q ss_pred             CceEEEEEcCCCceEEEEc------------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy9936          91 NKVTRMEFLPYHFLLATAS------------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTM  158 (315)
Q Consensus        91 ~~v~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i  158 (315)
                      ..+..++|+|++++++++.            .+..+.+||..+++....+..+ ..+..++|+|+|+++++++.+  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cce
Confidence            3345799999999888775            3567899999999888887644 457889999999999988754  566


Q ss_pred             EcCCCCcceeE------------------------------------------------------------------eec
Q psy9936         159 WSPTVQKPLAS------------------------------------------------------------------LLC  172 (315)
Q Consensus       159 ~d~~~~~~~~~------------------------------------------------------------------~~~  172 (315)
                      ||..+++....                                                                  +..
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            77654432111                                                                  112


Q ss_pred             ccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEcCCEEEecCCCc
Q psy9936         173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSRGNIVEFLKPPE  245 (315)
Q Consensus       173 ~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~i~~~~~~~  245 (315)
                      +...+..+.++|++.+++.+  ++.|++||+.++ +.+..+.....+.+++|+|||.  ++++.+++|.+|+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCC-cEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            33455667788888888766  478999999998 8888888777899999999994  4555699999999844

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.7e-21  Score=168.31  Aligned_cols=190  Identities=9%  Similarity=-0.020  Sum_probs=136.8

Q ss_pred             EEEcCCCC--EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCE---EEEee-
Q psy9936          16 MNYTKNGR--HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIE---LHCLK-   88 (315)
Q Consensus        16 ~~~s~~~~--~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~---~~~~~-   88 (315)
                      ..+++|.+  ++++.+.||.|+|||+.+++.+..+.....+..++|+|||+++++++ |+.|++||+.+..   ...+. 
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~  103 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  103 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence            34555544  55778889999999999999999998667899999999999998887 8999999995432   22233 


Q ss_pred             ---cCCceEEEEEcCCCceEEEE-cCCCeEEEEEccCCeEEEEeccCC-----------CCeEEEEEcCCCCEEEEEc-C
Q psy9936          89 ---VLNKVTRMEFLPYHFLLATA-SEEGYLSWLDTSIGKIVSDFSAKK-----------GKLSVMTQNPYNACICLGH-R  152 (315)
Q Consensus        89 ---~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~-----------~~v~~~~~~p~~~~l~~~~-~  152 (315)
                         +...+.+++|+|||++++++ ..++.+.+||..++.....+..|.           +....+.+++++..++... .
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence               22445667778899987554 578999999999998877765443           3345567777777655443 3


Q ss_pred             CCeEEEEcCCCCccee-EeecccccEEEEEECCCCCEEEEeeC-CCcEEEEEccC
Q psy9936         153 NGTVTMWSPTVQKPLA-SLLCHKAGIQSVAVNHTGTYMATSAG-DSQLRIWDVRN  205 (315)
Q Consensus       153 d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~  205 (315)
                      .+.+.+++..+...+. ....+...+..+.|+|++++++++.. +..+.+++..+
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence            5677777766654332 23357778899999999998777653 34466666543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2e-20  Score=161.68  Aligned_cols=183  Identities=12%  Similarity=-0.012  Sum_probs=143.5

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCC---EEEEeecC----CceEE
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGI---ELHCLKVL----NKVTR   95 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~---~~~~~~~~----~~v~~   95 (315)
                      ++++.+.+|.|.|||..+++++..+.....+..++|+|||+++++++ |+.+.+||+.+.   ....+...    ..+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            45888999999999999999999998666799999999999999877 899999998532   23333322    44555


Q ss_pred             EEEcCCCceE-EEEcCCCeEEEEEccCCeEEEEeccC-----------CCCeEEEEEcCCCCEE-EEEcCCCeEEEEcCC
Q psy9936          96 MEFLPYHFLL-ATASEEGYLSWLDTSIGKIVSDFSAK-----------KGKLSVMTQNPYNACI-CLGHRNGTVTMWSPT  162 (315)
Q Consensus        96 ~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~-----------~~~v~~~~~~p~~~~l-~~~~~d~~i~i~d~~  162 (315)
                      ..|+|||++| +++..++.+.+||..+++.+..+..+           ......+.++|+|..+ ++...++.|.+||..
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            6678899876 67788999999999999888776543           3456778999999865 556778999999998


Q ss_pred             CCcceeEee-cccccEEEEEECCCCCEEEEeeCC-CcEEEEEccCC
Q psy9936         163 VQKPLASLL-CHKAGIQSVAVNHTGTYMATSAGD-SQLRIWDVRNL  206 (315)
Q Consensus       163 ~~~~~~~~~-~~~~~i~~~~~sp~g~~l~~~~~d-~~i~iwd~~~~  206 (315)
                      +.+...... .+...+..++|+|+|+++++++.+ +.+.++|..+.
T Consensus       194 ~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            876544333 355678899999999988777654 46888888765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=8.5e-21  Score=157.65  Aligned_cols=200  Identities=13%  Similarity=0.088  Sum_probs=155.9

Q ss_pred             CcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCC------CceeEEEEeecCcEEEEEe-------------
Q psy9936          11 FGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVM------EEVYDIKWLHLETMFAVAQ-------------   70 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~-------------   70 (315)
                      ..+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...      ..+..++|+|++++++++.             
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence            457899999999987 46678899999999999988776522      2356789999999887663             


Q ss_pred             CCeEEEEeCCC-CEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec--------------------
Q psy9936          71 KDWVYIYDNQG-IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS--------------------  129 (315)
Q Consensus        71 ~~~i~i~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------------  129 (315)
                      +..+.+||... .....+.....+..++|+|+|+++++++.+  +.+||..+++....+.                    
T Consensus       114 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence            35788999854 444556667788899999999999988654  6678776654433321                    


Q ss_pred             ----------------------------------------------cCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCC
Q psy9936         130 ----------------------------------------------AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV  163 (315)
Q Consensus       130 ----------------------------------------------~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~  163 (315)
                                                                    .+...+..+.++|++.+++.+  ++.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~  269 (337)
T d1pbyb_         192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC
Confidence                                                          122334556677777777665  58999999999


Q ss_pred             CcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR  216 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  216 (315)
                      ++.+..+. +...+.+++|+|||++|++++.|+.|++||..++ +.+..+..+
T Consensus       270 ~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~-~~v~~i~~~  320 (337)
T d1pbyb_         270 NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDLP  320 (337)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC-CEEEEEECG
T ss_pred             CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEEECC
Confidence            99888876 6677899999999999999999999999999998 888887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.4e-21  Score=169.04  Aligned_cols=199  Identities=15%  Similarity=0.064  Sum_probs=133.6

Q ss_pred             EeeCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE--EEEec----CCCceeEEEEeecCcEEEE-Ee-CCeEEEE
Q psy9936           6 DLDLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL--ACEMN----VMEEVYDIKWLHLETMFAV-AQ-KDWVYIY   77 (315)
Q Consensus         6 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~----~~~~v~~~~~~~~~~~l~~-~~-~~~i~i~   77 (315)
                      .+.....+..++|||||+++++++.|+.|++||+.+++.  ...+.    +.+.+.+..|+|||++|++ +. ++.|.+|
T Consensus        57 ~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~  136 (432)
T d1qksa2          57 VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  136 (432)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             EEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence            344556799999999999999999999999999987763  33333    3334555667889998754 43 8999999


Q ss_pred             eCCCC-EEEEee------------cCCceEEEEEcCCCceE-EEEcCCCeEEEEEccCCeEEEEec-cCCCCeEEEEEcC
Q psy9936          78 DNQGI-ELHCLK------------VLNKVTRMEFLPYHFLL-ATASEEGYLSWLDTSIGKIVSDFS-AKKGKLSVMTQNP  142 (315)
Q Consensus        78 ~~~~~-~~~~~~------------~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~p  142 (315)
                      |..+. .+..+.            .......+.++|++..+ ++...++.|.+||..+++...... .+...+..++|+|
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp  216 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG  216 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence            98544 333322            22456778999998765 556778999999998876544332 2455688999999


Q ss_pred             CCCEEEEEcC-CCeEEEEcCCCCcceeEeec-----ccccEEEEEECCCCCEEEEee-CCCcEEEEEcc
Q psy9936         143 YNACICLGHR-NGTVTMWSPTVQKPLASLLC-----HKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVR  204 (315)
Q Consensus       143 ~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~  204 (315)
                      +|+++++++. ++.+.++|..+++.+..+..     |........+...+...++.. .++.|.+|+..
T Consensus       217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence            9997776654 56899999987765544431     222333333433333333332 24555555543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=4.2e-21  Score=160.11  Aligned_cols=228  Identities=8%  Similarity=-0.051  Sum_probs=159.1

Q ss_pred             EEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCE-EEEeecC
Q psy9936          16 MNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIE-LHCLKVL   90 (315)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~-~~~~~~~   90 (315)
                      ++|++++++|++++.++.|.+||+.+++.+.++.  +...+.+++|+|||++++++.  ++.|++||+.... +..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5789999999999999999999999999988776  455688999999999876553  7899999996544 3333322


Q ss_pred             -------CceEEEEEcCCCceEEEEc------------CCCeEEEEEccCCeEEEEecc--CCCCeEEEEEcCCCCEEEE
Q psy9936          91 -------NKVTRMEFLPYHFLLATAS------------EEGYLSWLDTSIGKIVSDFSA--KKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        91 -------~~v~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~  149 (315)
                             ..+..++|+|||+++++++            .+..+.+||..+++....+..  ....+..+.+++++.++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence                   2356799999999888765            467789999887654332221  1122333444444443332


Q ss_pred             Ec----------------------------------------------------------------CCCeEEEEcCCCCc
Q psy9936         150 GH----------------------------------------------------------------RNGTVTMWSPTVQK  165 (315)
Q Consensus       150 ~~----------------------------------------------------------------~d~~i~i~d~~~~~  165 (315)
                      ++                                                                .+..+.+||+.++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence            21                                                                11223334444333


Q ss_pred             ceeE-eecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEEcCCEEEecC
Q psy9936         166 PLAS-LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATSRGNIVEFLK  242 (315)
Q Consensus       166 ~~~~-~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~i~~~~  242 (315)
                      .... +..|...+..+.++|++.+++.... +.|.+||..++ +.+..+.....+.+++|+|||.  ++++.++.|++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~-~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR-KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT-EEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC-cEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            2222 2245556777888888887776654 47999999998 8888887777899999999994  4555699999999


Q ss_pred             CCc
Q psy9936         243 PPE  245 (315)
Q Consensus       243 ~~~  245 (315)
                      +.+
T Consensus       320 ~~t  322 (346)
T d1jmxb_         320 PDT  322 (346)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            843

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.5e-17  Score=137.84  Aligned_cols=242  Identities=12%  Similarity=0.118  Sum_probs=166.2

Q ss_pred             EEEEEcCCCeEEEEEccCc---eEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCC--CEEEE---eecCCce
Q psy9936          24 HLLLGGKRGHVAAFDWVRK---TLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQG--IELHC---LKVLNKV   93 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~--~~~~~---~~~~~~v   93 (315)
                      .+++++.+++|++|++++.   +.+..+.+.+.+..++|+|||++|+++.  ++.|.+|++..  .....   ......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3467778999999998654   3455667889999999999999886664  78999999842  22222   2334567


Q ss_pred             EEEEEcCCCceEEEEcC-CCeEEEEEccCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEcC-CCeEEEEcCCCCcceeE
Q psy9936          94 TRMEFLPYHFLLATASE-EGYLSWLDTSIGKIVSD--FSAKKGKLSVMTQNPYNACICLGHR-NGTVTMWSPTVQKPLAS  169 (315)
Q Consensus        94 ~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~i~d~~~~~~~~~  169 (315)
                      ..++|+|+|++|++++. ++.+.+|+.........  ...+...+.++.++|+++++++++. +..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            88999999999888874 67899999876654433  3346667888999999998877664 56899999876543322


Q ss_pred             ee------cccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCee---Eec-------cCCCceeEEEccCCe--E
Q psy9936         170 LL------CHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLN---TFR-------TRTPINNLAFSQRGL--L  230 (315)
Q Consensus       170 ~~------~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~---~~~-------~~~~v~~~~~s~~g~--~  230 (315)
                      ..      .....+..++|++++.+++... ..+...+|+.......+.   ...       .......+++++++.  +
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence            11      2335568899999999877665 455688888754412221   111       111356788999994  2


Q ss_pred             EEE-cCCEEEecCC-------------------CceeecccccccccCCc-chhhh
Q psy9936         231 ATS-RGNIVEFLKP-------------------PEINFEPRRKANKAGGS-VQRAK  265 (315)
Q Consensus       231 ~~~-~~~~i~~~~~-------------------~~~~~~~~~~~~~~~~~-~~~~~  265 (315)
                      ++. .++.+.+|..                   ..++|+|||+++..++. ++.++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence            222 3566665532                   57999999998766543 34433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=1.4e-17  Score=138.48  Aligned_cols=205  Identities=12%  Similarity=0.097  Sum_probs=140.8

Q ss_pred             CCcEEEEEEcCCCCEE-EEEcCCCeEEEEEccCceEEEEecCC-------CceeEEEEeecCcEEEEEe-----------
Q psy9936          10 QFGIYRMNYTKNGRHL-LLGGKRGHVAAFDWVRKTLACEMNVM-------EEVYDIKWLHLETMFAVAQ-----------   70 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-----------   70 (315)
                      ...+.+++|+|||+++ +++..++.|++||+.+++....+...       ..+..++|+|||++++++.           
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence            4567899999999987 45567899999999999988776522       1356789999998887653           


Q ss_pred             --CCeEEEEeCCC-CE---EEEeecCCceEEEEEcCCCceEEEE------------------------------------
Q psy9936          71 --KDWVYIYDNQG-IE---LHCLKVLNKVTRMEFLPYHFLLATA------------------------------------  108 (315)
Q Consensus        71 --~~~i~i~~~~~-~~---~~~~~~~~~v~~~~~~~~~~~l~~~------------------------------------  108 (315)
                        +..+.+|+... ..   +........+..+.+++++.+++++                                    
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  198 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEE
Confidence              45677777532 11   1111111222333333333322221                                    


Q ss_pred             ----------------------------cCCCeEEEEEccCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEcCCCeEEEE
Q psy9936         109 ----------------------------SEEGYLSWLDTSIGKIVSD-FSAKKGKLSVMTQNPYNACICLGHRNGTVTMW  159 (315)
Q Consensus       109 ----------------------------~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~  159 (315)
                                                  ..+..+.+||+.++..... +..+...+..+.++|++.+++... ++.|.+|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~  277 (346)
T d1jmxb_         199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKY  277 (346)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEE
T ss_pred             EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEE
Confidence                                        1122344455544433322 334555677788888887777665 4579999


Q ss_pred             cCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC
Q psy9936         160 SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT  217 (315)
Q Consensus       160 d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  217 (315)
                      |+.+++.+..+. +...+.+++|+|||++|++++.|+.|++||+.++ +.+..+..+.
T Consensus       278 d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~-~~i~~i~~p~  333 (346)
T d1jmxb_         278 DLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKLPG  333 (346)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEECSS
T ss_pred             ECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC-CEEEEEECCC
Confidence            999999888776 5567899999999999999999999999999999 8888887655

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.1e-16  Score=130.79  Aligned_cols=234  Identities=13%  Similarity=0.105  Sum_probs=159.6

Q ss_pred             eCCCcEEEEEEcCCCCEEEEE-cCCCeEEEEEccCceE----EEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCC
Q psy9936           8 DLQFGIYRMNYTKNGRHLLLG-GKRGHVAAFDWVRKTL----ACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQ   80 (315)
Q Consensus         8 ~~~~~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~   80 (315)
                      ...+.|.+++|||||++|+++ ..++.|++|++.....    .........+..++|+|||++|+++.  ++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            336788999999999988554 5589999999875532    22233455678899999999998886  5689999875


Q ss_pred             CCEEE----EeecCCceEEEEEcCCCceEEEEc-CCCeEEEEEccCCeEEEE------eccCCCCeEEEEEcCCCCEEEE
Q psy9936          81 GIELH----CLKVLNKVTRMEFLPYHFLLATAS-EEGYLSWLDTSIGKIVSD------FSAKKGKLSVMTQNPYNACICL  149 (315)
Q Consensus        81 ~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~------~~~~~~~v~~~~~~p~~~~l~~  149 (315)
                      .....    ...+...+.++.++|+++++++++ .+..+.+|+.........      ..........++|++++.+++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            43322    223446788899999998877765 456799999876432211      1123445788999999997765


Q ss_pred             E-cCCCeEEEEcCCCCcc----eeEee------cccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEec---
Q psy9936         150 G-HRNGTVTMWSPTVQKP----LASLL------CHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFR---  214 (315)
Q Consensus       150 ~-~~d~~i~i~d~~~~~~----~~~~~------~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~---  214 (315)
                      . ...+...+|+......    ...+.      ........++++|++++++.. ..++.+.+|++... .......   
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  272 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKEGFQ  272 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEEEEE
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC-CCEEEEEEEe
Confidence            5 4566777887654321    11111      123456788999999976655 55678999998765 3332222   


Q ss_pred             -cCCCceeEEEccCCe-EEEEc--CCEEEecC
Q psy9936         215 -TRTPINNLAFSQRGL-LATSR--GNIVEFLK  242 (315)
Q Consensus       215 -~~~~v~~~~~s~~g~-~~~~~--~~~i~~~~  242 (315)
                       ....+.+++|+|||+ +++++  ++.|++|+
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence             223578999999996 34443  67899885

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=1.3e-16  Score=134.52  Aligned_cols=228  Identities=12%  Similarity=-0.008  Sum_probs=157.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEc-----CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-----------CCe
Q psy9936          10 QFGIYRMNYTKNGRHLLLGG-----KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-----------KDW   73 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~-----~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~   73 (315)
                      ..++.+++++|||+.+++..     ..+.+.+||..+++.+..+... ....++|+|||++|+++.           ++.
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~   98 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCcccccccceE
Confidence            67889999999999887642     3467999999999998887632 234799999999998764           367


Q ss_pred             EEEEeCCCCE-EEEeecC--------CceEEEEEcCCCceEEEEc--CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcC
Q psy9936          74 VYIYDNQGIE-LHCLKVL--------NKVTRMEFLPYHFLLATAS--EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNP  142 (315)
Q Consensus        74 i~i~~~~~~~-~~~~~~~--------~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p  142 (315)
                      |.+||..+.. +..+...        .....+.|+++++.++...  .++.+.+|+....+......    ...++.++|
T Consensus        99 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~  174 (373)
T d2madh_          99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCYHIHP  174 (373)
T ss_pred             EEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cceeEEEec
Confidence            9999996543 3333322        2235678999988766554  45678899988766554432    356778889


Q ss_pred             CCCE-EEEEcCCCeEEEEcCCCCcceeEeec-------------------------------------------------
Q psy9936         143 YNAC-ICLGHRNGTVTMWSPTVQKPLASLLC-------------------------------------------------  172 (315)
Q Consensus       143 ~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------------------------------  172 (315)
                      +|+. +++.+.|+.+.+||..++........                                                 
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence            8874 45777889999998765432211100                                                 


Q ss_pred             c----------cccEEEEEECCCCCEEE----------EeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--E
Q psy9936         173 H----------KAGIQSVAVNHTGTYMA----------TSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--L  230 (315)
Q Consensus       173 ~----------~~~i~~~~~sp~g~~l~----------~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~  230 (315)
                      +          ......++++|++..++          +...++.+.+||..++ +.+..+.....+..++|+|||.  +
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-~~~~~~~~~~~~~~~a~spDG~~~l  333 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLGHDVDAISVAQDGGPDL  333 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC-cEEEEecCCCCeeEEEECCCCCEEE
Confidence            0          01112345556655443          3445567899999998 8888887777899999999984  3


Q ss_pred             E--EEcCCEEEecCC
Q psy9936         231 A--TSRGNIVEFLKP  243 (315)
Q Consensus       231 ~--~~~~~~i~~~~~  243 (315)
                      +  .+.+++|++|+.
T Consensus       334 ~vt~~~d~~v~v~D~  348 (373)
T d2madh_         334 YALSAGTEVLHIYDA  348 (373)
T ss_pred             EEEeCCCCeEEEEEC
Confidence            3  345889999987

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=4.4e-17  Score=136.28  Aligned_cols=214  Identities=12%  Similarity=0.035  Sum_probs=137.9

Q ss_pred             cEEEEEEcCCCCEEEEEc-----CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-----------CCeEE
Q psy9936          12 GIYRMNYTKNGRHLLLGG-----KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-----------KDWVY   75 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~-----~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~i~   75 (315)
                      ++.-.+.+|||+.+++..     .+..|.+||..+++.+..+.. +....++|+|||++|++++           ++.|.
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            344446789999887653     356799999999998887762 2334799999999887643           57899


Q ss_pred             EEeCCCCE-EEEeecC--------CceEEEEEcCCCceEEEEc--CCCeEEEEEccCCeEEEEeccCCC-------C---
Q psy9936          76 IYDNQGIE-LHCLKVL--------NKVTRMEFLPYHFLLATAS--EEGYLSWLDTSIGKIVSDFSAKKG-------K---  134 (315)
Q Consensus        76 i~~~~~~~-~~~~~~~--------~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~-------~---  134 (315)
                      +||..+.. ...+...        .....++|+|+++.+++++  .+..+.+|+..+++.+..+..+..       .   
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            99995443 3333211        2345689999998877664  456788898887765544322110       0   


Q ss_pred             -----------------------------------eEEEEEcCCCCEEEEEcCCCeEEEE--------------------
Q psy9936         135 -----------------------------------LSVMTQNPYNACICLGHRNGTVTMW--------------------  159 (315)
Q Consensus       135 -----------------------------------v~~~~~~p~~~~l~~~~~d~~i~i~--------------------  159 (315)
                                                         +....+.+++..++.++.++.+.+|                    
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  241 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE  241 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccce
Confidence                                               0111222233333444444445555                    


Q ss_pred             --------------------------------------------cCCCCcceeEeecccccEEEEEECCCCC--EEEEee
Q psy9936         160 --------------------------------------------SPTVQKPLASLLCHKAGIQSVAVNHTGT--YMATSA  193 (315)
Q Consensus       160 --------------------------------------------d~~~~~~~~~~~~~~~~i~~~~~sp~g~--~l~~~~  193 (315)
                                                                  |+.+++.+..+. +...+.+++|+|||+  ++++++
T Consensus       242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEET
T ss_pred             EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEEC
Confidence                                                        444444444443 234577899999998  456677


Q ss_pred             CCCcEEEEEccCCCCCeeEeccCC-CceeEEEccCC
Q psy9936         194 GDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG  228 (315)
Q Consensus       194 ~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g  228 (315)
                      .|+.|++||++++ +.+..+..+. ....+.+.++|
T Consensus       321 ~d~~i~v~D~~tg-~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         321 GDKTLYIHDAESG-EELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             TTTEEEEEETTTC-CEEEEECCCCSSCCEEECCCCC
T ss_pred             CCCEEEEEECCCC-CEEEEEeCcCCCccEEEeCCCC
Confidence            8999999999999 8888887654 35555555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=4e-16  Score=131.42  Aligned_cols=209  Identities=15%  Similarity=0.060  Sum_probs=148.0

Q ss_pred             EEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEecC-CCc-------eeEEEEeecCcEEEEEe---CCe
Q psy9936          15 RMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMNV-MEE-------VYDIKWLHLETMFAVAQ---KDW   73 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~-~~~-------v~~~~~~~~~~~l~~~~---~~~   73 (315)
                      .++|||||++|++++          .++.|.+||..+++....+.. ...       ...+.|+++++.+.+..   ++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            789999999998864          357899999999998877652 222       35578889888766553   467


Q ss_pred             EEEEeCCCCEEEEeecCCceEEEEEcCCCce-EEEEcCCCeEEEEEccCCeEEEEecc----------------------
Q psy9936          74 VYIYDNQGIELHCLKVLNKVTRMEFLPYHFL-LATASEEGYLSWLDTSIGKIVSDFSA----------------------  130 (315)
Q Consensus        74 i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~----------------------  130 (315)
                      +.+|+......  ..+.....++.++|++.. +++.+.|+.+.+|+...+........                      
T Consensus       150 ~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d2madh_         150 VGLVVQGGSSD--DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             eEEeeccCCeE--EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence            88888755432  333445677888998764 46778889999998765433221100                      


Q ss_pred             ---------------------------C----------CCCeEEEEEcCCCCEEE----------EEcCCCeEEEEcCCC
Q psy9936         131 ---------------------------K----------KGKLSVMTQNPYNACIC----------LGHRNGTVTMWSPTV  163 (315)
Q Consensus       131 ---------------------------~----------~~~v~~~~~~p~~~~l~----------~~~~d~~i~i~d~~~  163 (315)
                                                 +          ......++++|++..++          +...++.+.+||+.+
T Consensus       228 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC
Confidence                                       0          00112244555555443          345567899999999


Q ss_pred             CcceeEeecccccEEEEEECCCCCE--EEEeeCCCcEEEEEccCCCCCeeEeccC-CCceeEEEccC
Q psy9936         164 QKPLASLLCHKAGIQSVAVNHTGTY--MATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQR  227 (315)
Q Consensus       164 ~~~~~~~~~~~~~i~~~~~sp~g~~--l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~  227 (315)
                      ++.+..+. +...+..++|+|||+.  +++++.|+.|++||+.++ +.+..+..+ ...+.+++.++
T Consensus       308 ~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         308 GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEECCCCCCCcEEEEecC
Confidence            98888776 6678899999999984  467899999999999999 899999755 35677776554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.66  E-value=2.7e-14  Score=120.79  Aligned_cols=236  Identities=9%  Similarity=0.000  Sum_probs=161.0

Q ss_pred             EEEEcCCCeEEEEEccCceEEEEecC--C-----------------------------CceeEEEEeecCcEEEEEe--C
Q psy9936          25 LLLGGKRGHVAAFDWVRKTLACEMNV--M-----------------------------EEVYDIKWLHLETMFAVAQ--K   71 (315)
Q Consensus        25 l~~~~~dg~i~v~~~~~~~~~~~~~~--~-----------------------------~~v~~~~~~~~~~~l~~~~--~   71 (315)
                      +++++.+|.|+||++.+++.+..+..  .                             .......++|||++|.+..  +
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            45777899999999999998877641  0                             1122333468999998875  6


Q ss_pred             CeEEEEeCCCCEEEE---eecCCceEEEEEcCCCce--EEEEcCCC-----------------eEEEEEccCCeEEEEec
Q psy9936          72 DWVYIYDNQGIELHC---LKVLNKVTRMEFLPYHFL--LATASEEG-----------------YLSWLDTSIGKIVSDFS  129 (315)
Q Consensus        72 ~~i~i~~~~~~~~~~---~~~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i~~~d~~~~~~~~~~~  129 (315)
                      +.|.++|+...+...   +.....+..++|+|+++.  ++..+.+.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            799999997654433   334578999999999984  44433322                 23558888887777665


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEcCC-----------------------------------------CeEEEEcCCCCccee
Q psy9936         130 AKKGKLSVMTQNPYNACICLGHRN-----------------------------------------GTVTMWSPTVQKPLA  168 (315)
Q Consensus       130 ~~~~~v~~~~~~p~~~~l~~~~~d-----------------------------------------~~i~i~d~~~~~~~~  168 (315)
                      .. +.+..+.++|+|+++++.+.+                                         +.+.+++....+.+.
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            44 346779999999988876543                                         344455555555666


Q ss_pred             EeecccccEEEEEECCCCCEEE-EeeCCCcEEEEEccCCC-------CCeeEeccC----CCceeEEEccCCeEEEE--c
Q psy9936         169 SLLCHKAGIQSVAVNHTGTYMA-TSAGDSQLRIWDVRNLE-------GPLNTFRTR----TPINNLAFSQRGLLATS--R  234 (315)
Q Consensus       169 ~~~~~~~~i~~~~~sp~g~~l~-~~~~d~~i~iwd~~~~~-------~~~~~~~~~----~~v~~~~~s~~g~~~~~--~  234 (315)
                      .+....+ ...+.++|||++++ ++..+++|.+||+.+..       .....+..+    -+....+|+++|...++  .
T Consensus       253 ~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         253 YIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence            6665444 57899999999875 56789999999987531       111111111    13566789999964444  4


Q ss_pred             CCEEEecCC-------------------------------CceeecccccccccCCcch
Q psy9936         235 GNIVEFLKP-------------------------------PEINFEPRRKANKAGGSVQ  262 (315)
Q Consensus       235 ~~~i~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~  262 (315)
                      |+.|..|+.                               ....++|||++|++++...
T Consensus       332 ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s  390 (441)
T d1qnia2         332 DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFS  390 (441)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCC
T ss_pred             cceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccc
Confidence            778886652                               6677899999999995443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=4.9e-15  Score=124.74  Aligned_cols=209  Identities=12%  Similarity=0.017  Sum_probs=137.5

Q ss_pred             EEEEcCCCCEEEEEc----------CCCeEEEEEccCceEEEEec-CC-------CceeEEEEeecCcEEEEEe--CCeE
Q psy9936          15 RMNYTKNGRHLLLGG----------KRGHVAAFDWVRKTLACEMN-VM-------EEVYDIKWLHLETMFAVAQ--KDWV   74 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~l~~~~--~~~i   74 (315)
                      .++|+|||+.|++.+          .++.|.+||..+++....+. +.       .....++|+|||++|+++.  ++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            588999999888753          36789999999999887764 21       1245689999999888775  6899


Q ss_pred             EEEeCCCCEE-EEeecC--------CceEEEEEcCCCceEEEEcC-----------------------------------
Q psy9936          75 YIYDNQGIEL-HCLKVL--------NKVTRMEFLPYHFLLATASE-----------------------------------  110 (315)
Q Consensus        75 ~i~~~~~~~~-~~~~~~--------~~v~~~~~~~~~~~l~~~~~-----------------------------------  110 (315)
                      .+||+..... ..+...        .....+.++++|..++....                                   
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence            9999865443 222211        11223444455444333221                                   


Q ss_pred             -CCeEEEEEccCCeEEEEe--ccC----------CCCeEEEEEcCCCCEEEEEcC---------CCeEEEEcCCCCccee
Q psy9936         111 -EGYLSWLDTSIGKIVSDF--SAK----------KGKLSVMTQNPYNACICLGHR---------NGTVTMWSPTVQKPLA  168 (315)
Q Consensus       111 -d~~i~~~d~~~~~~~~~~--~~~----------~~~v~~~~~~p~~~~l~~~~~---------d~~i~i~d~~~~~~~~  168 (315)
                       .+.+.+++...+......  ..+          ......++++|++..++....         ...|.+||..+++.+.
T Consensus       229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~  308 (368)
T d1mdah_         229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence             223334444333222111  000          011234778888887665422         1369999999999888


Q ss_pred             EeecccccEEEEEECCCCC-E-EEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEc
Q psy9936         169 SLLCHKAGIQSVAVNHTGT-Y-MATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS  225 (315)
Q Consensus       169 ~~~~~~~~i~~~~~sp~g~-~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  225 (315)
                      .+. +...+..++|+|||+ + ++++..++.|++||..++ +.+..+......+.|++-
T Consensus       309 ~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         309 PIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             CCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSCCCEEECC
T ss_pred             Eec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEECCCCCCEEEEe
Confidence            776 456788999999997 3 456678899999999999 889888877666666653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=3.8e-14  Score=123.17  Aligned_cols=101  Identities=14%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             CcEEEEEEcCCCCEEEEEcC---------CCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC
Q psy9936          11 FGIYRMNYTKNGRHLLLGGK---------RGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG   81 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~---------dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~   81 (315)
                      ..|.++.|||||++|++++.         ++.+.+||+.+++......+...+..+.|+|||+.+|...++.+++|+..+
T Consensus        62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~  141 (470)
T d2bgra1          62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN  141 (470)
T ss_dssp             SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred             CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceEEECCC
Confidence            56899999999999998743         568899999999876655588889999999999999999999999999865


Q ss_pred             CEEEEeec--------------------CCceEEEEEcCCCceEEEEcCC
Q psy9936          82 IELHCLKV--------------------LNKVTRMEFLPYHFLLATASEE  111 (315)
Q Consensus        82 ~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~~~~d  111 (315)
                      .....+..                    .+....+.|||||+.|+....|
T Consensus       142 g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            44333221                    1234568899999999987544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=1.6e-13  Score=115.31  Aligned_cols=232  Identities=9%  Similarity=-0.113  Sum_probs=147.0

Q ss_pred             CCcEEEEEEcCCCCEE--EE-EcCCC--eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-----------CCe
Q psy9936          10 QFGIYRMNYTKNGRHL--LL-GGKRG--HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-----------KDW   73 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l--~~-~~~dg--~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~~   73 (315)
                      .++...++..++++..  +. ...++  .+.+||..+++.+..+.... ...++|+|||+.|++++           ++.
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccCCe
Confidence            3444556677888743  32 23334  57777999999888776322 23689999999888764           457


Q ss_pred             EEEEeCC-CCEEEEeecC--------CceEEEEEcCCCceEEEEc-CCCeEEEEEccCCeEEEEeccCCCC-------eE
Q psy9936          74 VYIYDNQ-GIELHCLKVL--------NKVTRMEFLPYHFLLATAS-EEGYLSWLDTSIGKIVSDFSAKKGK-------LS  136 (315)
Q Consensus        74 i~i~~~~-~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~-------v~  136 (315)
                      |.+||.. ++.+..+...        .....++|+|||++++++. .++.+.+||+.+++....+..+...       ..
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT  177 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCce
Confidence            9999985 4444444311        2235689999999888775 5789999999999887776543321       22


Q ss_pred             EEEEcCCCCEEEEEcCC------------------------------------CeEEEEcCCCCcceeEe--ecc-----
Q psy9936         137 VMTQNPYNACICLGHRN------------------------------------GTVTMWSPTVQKPLASL--LCH-----  173 (315)
Q Consensus       137 ~~~~~p~~~~l~~~~~d------------------------------------~~i~i~d~~~~~~~~~~--~~~-----  173 (315)
                      .+.+++||..++....+                                    +.+.+++...+......  ..+     
T Consensus       178 ~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (368)
T d1mdah_         178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             EEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceee
Confidence            34445555543332211                                    22333333332221110  000     


Q ss_pred             -----cccEEEEEECCCCCEEEEeeCC---------CcEEEEEccCCCCCeeEeccCCCceeEEEccCCe--EEEE--cC
Q psy9936         174 -----KAGIQSVAVNHTGTYMATSAGD---------SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL--LATS--RG  235 (315)
Q Consensus       174 -----~~~i~~~~~sp~g~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~--~~  235 (315)
                           ......++++|++..++....+         ..|.+||..++ +.+..+.....+.+++|+|||.  +.++  .+
T Consensus       258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC-cEeEEecCCCceeEEEECCCCCEEEEEEeCCC
Confidence                 1112357888888876654322         25899999998 8888777666789999999983  3333  47


Q ss_pred             CEEEecCC
Q psy9936         236 NIVEFLKP  243 (315)
Q Consensus       236 ~~i~~~~~  243 (315)
                      +.|++|++
T Consensus       337 ~~v~v~D~  344 (368)
T d1mdah_         337 EVLDIYDA  344 (368)
T ss_dssp             TEEEEEES
T ss_pred             CeEEEEEC
Confidence            89999997

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=9.8e-12  Score=99.29  Aligned_cols=213  Identities=11%  Similarity=0.033  Sum_probs=141.8

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCC---CeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CC--eEEEEeCC-C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKR---GHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KD--WVYIYDNQ-G   81 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~i~~~~-~   81 (315)
                      ...+...+|||||+.||.....   ..+.+.+..++.......+.+......|+|+|+.++...  .+  .+..+... .
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~  117 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  117 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccc
Confidence            5667789999999999976543   357778888887777777888889999999999888765  22  33333333 3


Q ss_pred             CEEEEeecCCceEEEEEcCCCceEEEE-cCCC--eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCC---e
Q psy9936          82 IELHCLKVLNKVTRMEFLPYHFLLATA-SEEG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNG---T  155 (315)
Q Consensus        82 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---~  155 (315)
                      ................+++++..++.. ..++  .|...++..+.. ..+..+........|+|+++.++..+.++   .
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~  196 (269)
T d2hqsa1         118 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH  196 (269)
T ss_dssp             CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             cceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCcee
Confidence            333333344555566778877654444 3444  466666665533 33344556677789999999887765543   4


Q ss_pred             EEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCC---CcEEEEEccCCCCCeeEeccCCCceeEEEcc
Q psy9936         156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD---SQLRIWDVRNLEGPLNTFRTRTPINNLAFSQ  226 (315)
Q Consensus       156 i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  226 (315)
                      +.++|...+.  .....+........|||||++|+..+..   ..++++++.+. ...........+..++|||
T Consensus       197 i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~-~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         197 IAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSEEEEEEECC
T ss_pred             eeEeeccccc--ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEEeCCCCcEEeEEeCC
Confidence            5555655443  2333355667788999999998866543   36889999876 5444334444578899998

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=6.9e-14  Score=116.46  Aligned_cols=115  Identities=9%  Similarity=-0.063  Sum_probs=81.6

Q ss_pred             ceeEEEEeecCcEEEEEe------CCeEEEEeCCCCE-EEEeecCCceEEEEEcCCCceEEEEc----------CCCeEE
Q psy9936          53 EVYDIKWLHLETMFAVAQ------KDWVYIYDNQGIE-LHCLKVLNKVTRMEFLPYHFLLATAS----------EEGYLS  115 (315)
Q Consensus        53 ~v~~~~~~~~~~~l~~~~------~~~i~i~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~  115 (315)
                      ++.-.+.+||++.+++..      .+.|++||..+.. +..+. .+....++|+|||++|++++          .++.|.
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            334445689998887653      3579999996544 34443 33444799999999887654          478899


Q ss_pred             EEEccCCeEEEEeccCCC-------CeEEEEEcCCCCEEEEEc--CCCeEEEEcCCCCccee
Q psy9936         116 WLDTSIGKIVSDFSAKKG-------KLSVMTQNPYNACICLGH--RNGTVTMWSPTVQKPLA  168 (315)
Q Consensus       116 ~~d~~~~~~~~~~~~~~~-------~v~~~~~~p~~~~l~~~~--~d~~i~i~d~~~~~~~~  168 (315)
                      +||+.+++.+..+..+..       ....++|+|+|+++++++  .+..+.+||..+++.+.
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  143 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence            999999988877654332       234578999999877664  46688899887765443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=3.5e-13  Score=113.92  Aligned_cols=223  Identities=9%  Similarity=0.010  Sum_probs=148.9

Q ss_pred             EEEEEEcCCCCEEEEE-cCCCeEEEEEccCceEEEEec--CCCceeEEEEeecCc--EEEEEeCCeE-------------
Q psy9936          13 IYRMNYTKNGRHLLLG-GKRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLET--MFAVAQKDWV-------------   74 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~--~l~~~~~~~i-------------   74 (315)
                      .....++|||++|++. ..+..|.++|+.+++....+.  ....+..++|+|+++  +++......+             
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~  153 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN  153 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence            4455568999988655 567899999999998877554  567899999999988  4444444333             


Q ss_pred             -----EEEeCCC-CEEEEeecCCceEEEEEcCCCceEEEEcCCC------------------------------------
Q psy9936          75 -----YIYDNQG-IELHCLKVLNKVTRMEFLPYHFLLATASEEG------------------------------------  112 (315)
Q Consensus        75 -----~i~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------------------------  112 (315)
                           ..+|..+ .....+........+.++|+|+++++++.+.                                    
T Consensus       154 ~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~  233 (441)
T d1qnia2         154 SYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT  233 (441)
T ss_dssp             EEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred             ccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence                 3466643 3334445556778899999999888776432                                    


Q ss_pred             -----eEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcCCCeEEEEcCCCCcc--------eeEeecc---cc
Q psy9936         113 -----YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHRNGTVTMWSPTVQKP--------LASLLCH---KA  175 (315)
Q Consensus       113 -----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~i~d~~~~~~--------~~~~~~~---~~  175 (315)
                           .+.+++......+..+..+.. ...+.++|||++++ ++..+++|.+||+.+...        ...+.++   .-
T Consensus       234 v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         234 IGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             CTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             eCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence                 233333333344555554433 57799999999775 566799999999764221        1111111   12


Q ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEccC---------CCCCeeEecc-----CC-CceeEEEccCCeEEEEcCC
Q psy9936         176 GIQSVAVNHTGTYMATSAGDSQLRIWDVRN---------LEGPLNTFRT-----RT-PINNLAFSQRGLLATSRGN  236 (315)
Q Consensus       176 ~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~-----~~-~v~~~~~s~~g~~~~~~~~  236 (315)
                      .....+|+++|..+.+...|..|..|++..         ....+..+..     |. .+.+.+++|||+++++++.
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            345568999998888889999999999852         1122333333     32 3677889999998888643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=4e-11  Score=96.47  Aligned_cols=227  Identities=10%  Similarity=0.088  Sum_probs=166.6

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCC-------CceeEEEEeec-CcEEEEEe--CCeEEEEeCCC
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM-------EEVYDIKWLHL-ETMFAVAQ--KDWVYIYDNQG   81 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~l~~~~--~~~i~i~~~~~   81 (315)
                      .+..++++|+|+.+++-..++.|++||.+ ++.+..+...       .....+.+.++ +..+++..  ++.|..++..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            47899999999988887778899999965 6666665421       12345565554 44554443  46888888888


Q ss_pred             CEEEEeec--CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEcCCCeEE
Q psy9936          82 IELHCLKV--LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF--SAKKGKLSVMTQNPYNACICLGHRNGTVT  157 (315)
Q Consensus        82 ~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  157 (315)
                      .....+..  ......+++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.++++++++....+.|.
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence            77666543  3667899999999988888888889999864 6666665  33456688899999999888888899999


Q ss_pred             EEcCCCCcceeEee--cccccEEEEEECCCCCEEEEeeC-CCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCe-E
Q psy9936         158 MWSPTVQKPLASLL--CHKAGIQSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGL-L  230 (315)
Q Consensus       158 i~d~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~-~  230 (315)
                      +||.. ++.+.++-  +.......|++.|+|+++++-.. ++.|.+|+.. + +.+..+....   ..+.+++.|||. +
T Consensus       182 ~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G-~~~~~~~~~~~~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         182 VFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALESKVKHAQCFDVALMDDGSVV  258 (279)
T ss_dssp             EEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             eeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C-CEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence            99976 56666663  34456789999999997776544 4469999854 4 6666665432   478999999996 5


Q ss_pred             EEEcCCEEEecCC
Q psy9936         231 ATSRGNIVEFLKP  243 (315)
Q Consensus       231 ~~~~~~~i~~~~~  243 (315)
                      ++..++.|++|+-
T Consensus       259 V~~~n~~v~~fr~  271 (279)
T d1q7fa_         259 LASKDYRLYIYRY  271 (279)
T ss_dssp             EEETTTEEEEEEC
T ss_pred             EEeCCCeEEEEEe
Confidence            5566888888763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=1.9e-11  Score=97.32  Aligned_cols=230  Identities=9%  Similarity=-0.011  Sum_probs=149.5

Q ss_pred             CcEEEEEEcCCCCEEEEE-cCCCeEEEEEccCceEEEE-ecCCCceeEEEEeecCcEEEEEeCC-eEEEEeCCC-CEEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLG-GKRGHVAAFDWVRKTLACE-MNVMEEVYDIKWLHLETMFAVAQKD-WVYIYDNQG-IELHC   86 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~-~i~i~~~~~-~~~~~   86 (315)
                      ..+.+++++++|..+++. +..+.+..++......... .........+++.++++++++...+ .+++++... ..+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            467999999999966654 4556777776543322222 2223456788999999988776655 454444332 22222


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                      ......+.++++.++++++++-..+..+..++...................++++|+|+++++...++.|..+|......
T Consensus        94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            23346788999999998888777777788887654332221112233467899999999888888889999999875543


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC--CCceeEEEccCCeEEEE--cCCEEEecC
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR--TPINNLAFSQRGLLATS--RGNIVEFLK  242 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~~~~--~~~~i~~~~  242 (315)
                      .......-.....+++.++|+++++....+.|..++....  ....+...  ..+..|+++++|.+.++  .++.|+.++
T Consensus       174 ~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         174 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS--CCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC--eEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            3222234456789999999998888888888888876653  23333222  24789999999854433  456666443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.45  E-value=1.6e-10  Score=93.99  Aligned_cols=223  Identities=9%  Similarity=-0.006  Sum_probs=152.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCC--CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQ--GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~--~~~~~~   86 (315)
                      ...+..++++|||+++++...++.|+.|+.. ++..........+.+++|.++|+++++.. ++.+..++..  ......
T Consensus        27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          27 NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence            3457899999999999999889999999855 44444455677899999999999888875 5677777652  222222


Q ss_pred             e---ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec----------cCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          87 L---KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS----------AKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        87 ~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                      +   ........+.+.+++.++++.+.++.+..+|...+.......          ........+.++. +.++++.+..
T Consensus       106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~  184 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK  184 (302)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred             ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence            2   233668899999999999888889999999988764332221          1112356666653 3355566778


Q ss_pred             CeEEEEcCCCCcceeEe--ecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccC---CCceeEEE---c
Q psy9936         154 GTVTMWSPTVQKPLASL--LCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR---TPINNLAF---S  225 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~---s  225 (315)
                      +.|..+++.........  .........++++++|+++++...++.|..++...  +........   ..+++++|   +
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G--~~~~~~~~~~~~~~pt~vafg~~~  262 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR--STTIIAQAEQGVIGSTAVAFGQTE  262 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC--CEEEEECGGGTCTTEEEEEECCST
T ss_pred             CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC--CEEEEEecCCCCCCceEEEEcCCC
Confidence            89999887754322211  11234456799999999888888889999997764  332222222   24789999   5


Q ss_pred             cCC--eEEEEcCC
Q psy9936         226 QRG--LLATSRGN  236 (315)
Q Consensus       226 ~~g--~~~~~~~~  236 (315)
                      +|+  +|+++..+
T Consensus       263 ~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         263 GDCTAIYVVTNGG  275 (302)
T ss_dssp             TTTTEEEEEECTT
T ss_pred             CCCCEEEEECCCC
Confidence            666  45555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.1e-09  Score=86.92  Aligned_cols=195  Identities=13%  Similarity=0.081  Sum_probs=127.4

Q ss_pred             eEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeC----CeEEEEeCCCCEEEEe-ecCCceEEEEEcCCCceEEE
Q psy9936          33 HVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK----DWVYIYDNQGIELHCL-KVLNKVTRMEFLPYHFLLAT  107 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~~i~i~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~  107 (315)
                      .|+|.|.+.............+...+|||||+.||...+    ..+.+.+..+.....+ .+........|+|+|..++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            588889887777777777888899999999999997752    3577778766555544 44577889999999988876


Q ss_pred             EcC-CCe--EEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EcCCC--eEEEEcCCCCcceeEeecccccEEEEE
Q psy9936         108 ASE-EGY--LSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL-GHRNG--TVTMWSPTVQKPLASLLCHKAGIQSVA  181 (315)
Q Consensus       108 ~~~-d~~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~  181 (315)
                      ... ++.  +..+........ .............+++++..++. ...++  .|.+.++..+. ...+..+........
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~  177 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDAD  177 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEE
T ss_pred             eeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccccc
Confidence            543 333  333333333332 23334444556678888775544 34444  56666776654 333444567778889


Q ss_pred             ECCCCCEEEEeeCCC-cEEEEEccCCCCCeeEeccCCCceeEEEccCCe
Q psy9936         182 VNHTGTYMATSAGDS-QLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGL  229 (315)
Q Consensus       182 ~sp~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  229 (315)
                      |+|++++++..+.++ ...+|......................|||||.
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT  226 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS
T ss_pred             cccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCC
Confidence            999999888776544 444444433313344444444578899999995

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.38  E-value=5.3e-10  Score=91.30  Aligned_cols=194  Identities=8%  Similarity=0.068  Sum_probs=138.4

Q ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEec-CCC----ceeEEEEeecCcEEEEEe----------------C
Q psy9936          13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMN-VME----EVYDIKWLHLETMFAVAQ----------------K   71 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~----~v~~~~~~~~~~~l~~~~----------------~   71 (315)
                      ...++|+++|..|+++...+.|..++.++........ ..+    ..+.+.+.++|.+.++..                .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            5679999999887777766778888977654332222 111    357899999999887742                2


Q ss_pred             CeEEEEeCCCCEEEEeecCCceEEEEEcCCCc-----eEEEEcCCCeEEEEEccCCeEEE------Eecc-CCCCeEEEE
Q psy9936          72 DWVYIYDNQGIELHCLKVLNKVTRMEFLPYHF-----LLATASEEGYLSWLDTSIGKIVS------DFSA-KKGKLSVMT  139 (315)
Q Consensus        72 ~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~i~~~d~~~~~~~~------~~~~-~~~~v~~~~  139 (315)
                      +.|+.++.++............+.++|+|++.     ++++-+..+.|..||+.....+.      .+.. +......++
T Consensus       153 G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         153 GSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             ceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            35667777776555555556678899999864     44555778889999876432221      2222 223467899


Q ss_pred             EcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCC-EEEEeeCCCcEEEEEccCC
Q psy9936         140 QNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       140 ~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~~~~d~~i~iwd~~~~  206 (315)
                      +.++|+++++....+.|.+||.+.++.+..+..+...+++++|.|+++ ++++.+.++.|..+++...
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            999999888877789999999998887777776667889999999987 4556667788888887643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.38  E-value=1.8e-09  Score=88.38  Aligned_cols=216  Identities=10%  Similarity=0.088  Sum_probs=147.2

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEe-cCCCceeEEEEeecCcEEEEEe-----CCeEEEEeCCCCE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEM-NVMEEVYDIKWLHLETMFAVAQ-----KDWVYIYDNQGIE   83 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-----~~~i~i~~~~~~~   83 (315)
                      ...+..++|.++|+++++-...+.|+.|+.+++.....+ ........+++.++|+++++..     .+.+...+..+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            344578999999998777778899999998877655444 3556788999999999888764     2345566665544


Q ss_pred             EEEee-c---CCceEEEEEcCCCceEEEEcC------CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EcC
Q psy9936          84 LHCLK-V---LNKVTRMEFLPYHFLLATASE------EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL-GHR  152 (315)
Q Consensus        84 ~~~~~-~---~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~  152 (315)
                      +.... .   ......+.+.++|.+.++...      .+.+..++...+ .+..+...-...+.++|+|+++.|+. -+.
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEeccc
Confidence            33322 2   245788999999986665432      233555655433 33333223345688999999986644 466


Q ss_pred             CCeEEEEcCCCC-cceeEee-------cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-------
Q psy9936         153 NGTVTMWSPTVQ-KPLASLL-------CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-------  217 (315)
Q Consensus       153 d~~i~i~d~~~~-~~~~~~~-------~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------  217 (315)
                      .+.|..||+... .......       ........+++.++|++.++....+.|.+||. .+ +.+..+..+.       
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G-~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG-YPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS-CEEEEEECTTGGGTCSC
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC-cEEEEEeCCCcCCCcCc
Confidence            789999997643 2221111       11234568999999998888888999999996 45 7777776442       


Q ss_pred             CceeEEEccCC
Q psy9936         218 PINNLAFSQRG  228 (315)
Q Consensus       218 ~v~~~~~s~~g  228 (315)
                      .+++++|.|++
T Consensus       276 ~~~~~~~~~~~  286 (319)
T d2dg1a1         276 RSTHPQFIPGT  286 (319)
T ss_dssp             BCCEEEECTTS
T ss_pred             eeeeEEEeCCC
Confidence            36899998876

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=1.1e-10  Score=92.80  Aligned_cols=193  Identities=9%  Similarity=-0.026  Sum_probs=138.2

Q ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEe--
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCL--   87 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~--   87 (315)
                      ..+..++++++|.++++....+.+++++..+..............++++.++++++++.. ...+..++..+......  
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            456789999999988887777777777655555443333445678999999998877664 56788888765443333  


Q ss_pred             ecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcce
Q psy9936          88 KVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPL  167 (315)
Q Consensus        88 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~  167 (315)
                      ........++++|+++++++...++.|..+|...................+++.++|+++++....+.|..++..... .
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~  215 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-S  215 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-C
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-E
Confidence            233566889999999988888888899999987544333222344567899999999988888888899989876543 2


Q ss_pred             eEee-cccccEEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         168 ASLL-CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       168 ~~~~-~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      ..+. ..-.....|+++++|.++++-..++.|+.++..
T Consensus       216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            2222 223467899999999987776677777766543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=3.6e-12  Score=110.49  Aligned_cols=140  Identities=9%  Similarity=0.083  Sum_probs=106.1

Q ss_pred             eeEEEEeecCcEEEEEeCCeEEEEeCCCCE-EEEeec------CCceEEEEEcCCCceEEEEcC---------CCeEEEE
Q psy9936          54 VYDIKWLHLETMFAVAQKDWVYIYDNQGIE-LHCLKV------LNKVTRMEFLPYHFLLATASE---------EGYLSWL  117 (315)
Q Consensus        54 v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~-~~~~~~------~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~  117 (315)
                      ...+.|.+++.++. ..++.+.+||+.+.. ...+..      ...|.++.|||||++|+.++.         ++.+.+|
T Consensus        19 ~~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          19 LYSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            34688999998765 457889999996543 333332      256899999999999988753         5678999


Q ss_pred             EccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecc------------------cccEEE
Q psy9936         118 DTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCH------------------KAGIQS  179 (315)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~~i~~  179 (315)
                      |+.+++. ..+..+...+..+.|||||+.+|.. .++.+.+|+..+++.......+                  .+....
T Consensus        98 d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            9998764 4577788889999999999999986 4678999999988765443211                  123456


Q ss_pred             EEECCCCCEEEEeeCCC
Q psy9936         180 VAVNHTGTYMATSAGDS  196 (315)
Q Consensus       180 ~~~sp~g~~l~~~~~d~  196 (315)
                      +.|||||++||+...|.
T Consensus       176 ~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             EEECTTSSEEEEEEEEC
T ss_pred             cEECCCCCccceeEecC
Confidence            78999999999986543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.36  E-value=5.3e-10  Score=93.36  Aligned_cols=231  Identities=11%  Similarity=0.048  Sum_probs=139.6

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccC-ceEEEEe--cCCCceeEEEEeecCcEE--EEEe--CCeEEEEeC--C
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-KTLACEM--NVMEEVYDIKWLHLETMF--AVAQ--KDWVYIYDN--Q   80 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~--~~~~~v~~~~~~~~~~~l--~~~~--~~~i~i~~~--~   80 (315)
                      ..++.-|+|+|++++|.+... +.+..|.+.. +......  ........+.++++++.+  +++.  .+.+..+.+  .
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            445667999999999887654 4677776653 3333222  233445677888888743  3332  345555443  1


Q ss_pred             CCEEE------------E---e--ecCCceEEEEEcCCCceEEEEcC-CCeEEEEEccC-CeEE--EEec--cCCCCeEE
Q psy9936          81 GIELH------------C---L--KVLNKVTRMEFLPYHFLLATASE-EGYLSWLDTSI-GKIV--SDFS--AKKGKLSV  137 (315)
Q Consensus        81 ~~~~~------------~---~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~-~~~~--~~~~--~~~~~v~~  137 (315)
                      +....            .   .  .....+.++.|+|+|+++++++. ...|.+|+... +...  ....  ........
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~  197 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence            11110            0   0  11234789999999998877754 45788887653 3222  2221  23456889


Q ss_pred             EEEcCCCCEEEEEc-CCCeEEEEcCCCCcceeEee-------------------cccccEEEEEECCCCCEEEEeeC-C-
Q psy9936         138 MTQNPYNACICLGH-RNGTVTMWSPTVQKPLASLL-------------------CHKAGIQSVAVNHTGTYMATSAG-D-  195 (315)
Q Consensus       138 ~~~~p~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-------------------~~~~~i~~~~~sp~g~~l~~~~~-d-  195 (315)
                      ++|+|+++++++.. .+++|.+|++..++......                   .+......+.++|||++|+++.. + 
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence            99999999876554 57899999987654321111                   11224567899999999887642 2 


Q ss_pred             ----CcEEEEEccCCCCCeeEe----c---cCCCceeEEEcc-CCe-EEEE--cCCEEEecC
Q psy9936         196 ----SQLRIWDVRNLEGPLNTF----R---TRTPINNLAFSQ-RGL-LATS--RGNIVEFLK  242 (315)
Q Consensus       196 ----~~i~iwd~~~~~~~~~~~----~---~~~~v~~~~~s~-~g~-~~~~--~~~~i~~~~  242 (315)
                          ..|..|++... ..+...    .   .......++++| +|. ++++  .++.|.+|+
T Consensus       278 ~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         278 FELQGYIAGFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TTSCCEEEEEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             CccceEEEEEEecCC-CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence                23777777654 222211    1   112468899998 775 3344  368888876

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.36  E-value=1.3e-09  Score=88.98  Aligned_cols=229  Identities=14%  Similarity=0.093  Sum_probs=152.9

Q ss_pred             CcEEEEEEcCCCCEEEEEcC-------CCeEEEEEccCceEEEEecC-----CCceeEEEEeecCcEEEEEe-CCeEEEE
Q psy9936          11 FGIYRMNYTKNGRHLLLGGK-------RGHVAAFDWVRKTLACEMNV-----MEEVYDIKWLHLETMFAVAQ-KDWVYIY   77 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~-------dg~i~v~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~~~i~i~   77 (315)
                      ..+..++|.|+|+++++...       +|.|..||..++........     ......+.|.+++..++++. .+.|..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            45678899999997776433       46789999888765443321     12357899999987666665 5678888


Q ss_pred             eCCCCEEEEeecC------CceEEEEEcCCCceEEEEcC---------------CCeEEEEEccCCeEEEEeccCCCCeE
Q psy9936          78 DNQGIELHCLKVL------NKVTRMEFLPYHFLLATASE---------------EGYLSWLDTSIGKIVSDFSAKKGKLS  136 (315)
Q Consensus        78 ~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~v~  136 (315)
                      +.++.....+...      ...+.+++.++|.+.++-..               .|.|..++.. ++..... ..-...+
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceee
Confidence            9887665443321      23578999999987776422               2345555543 4433322 2233467


Q ss_pred             EEEEcCCCC-----EEEEEcCCCeEEEEcCCCCccee------Eeec-ccccEEEEEECCCCCEEEEeeCCCcEEEEEcc
Q psy9936         137 VMTQNPYNA-----CICLGHRNGTVTMWSPTVQKPLA------SLLC-HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR  204 (315)
Q Consensus       137 ~~~~~p~~~-----~l~~~~~d~~i~i~d~~~~~~~~------~~~~-~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~  204 (315)
                      .++|+|+++     ++++-+..+.|..||+.....+.      .+.+ +......+++.++|+++++....+.|.+||..
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            899998775     44455678899999876432222      1211 22345689999999988888888899999998


Q ss_pred             CCCCCeeEeccCC-CceeEEEccCC--eEEEE-cCCEEEecC
Q psy9936         205 NLEGPLNTFRTRT-PINNLAFSQRG--LLATS-RGNIVEFLK  242 (315)
Q Consensus       205 ~~~~~~~~~~~~~-~v~~~~~s~~g--~~~~~-~~~~i~~~~  242 (315)
                      .+ ..+..+..+. .+++++|.|++  ++++. .++.|...+
T Consensus       256 ~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         256 GG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CC-EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            77 7777776654 58899999998  34544 356666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.35  E-value=9.6e-10  Score=89.25  Aligned_cols=215  Identities=13%  Similarity=0.053  Sum_probs=146.4

Q ss_pred             CceEEEEecCCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEc
Q psy9936          41 RKTLACEMNVMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDT  119 (315)
Q Consensus        41 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  119 (315)
                      ..+.+..+.....+..+++.|||+++++.. ++.|+.++.++...........+.+++|+++|+++++...++.+..++.
T Consensus        17 ~~~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          17 PAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             CEEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             cccEEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            344455555444578899999999988876 7899999988876666666788999999999999888888888888887


Q ss_pred             cCC--eEEEEe-ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee----------cccccEEEEEECCCC
Q psy9936         120 SIG--KIVSDF-SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL----------CHKAGIQSVAVNHTG  186 (315)
Q Consensus       120 ~~~--~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~sp~g  186 (315)
                      ...  ...... .......+.+++.++|+++++.+.++.+..+|...+.......          ........+.++. +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~  175 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-N  175 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-T
T ss_pred             cccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-C
Confidence            543  222211 1234568899999999999988889999999988664221111          1112456666654 3


Q ss_pred             CEEEEeeCCCcEEEEEccCCCCCee---EeccCCCceeEEEccCCe-EEEE-cCCEEEecCC-----------------C
Q psy9936         187 TYMATSAGDSQLRIWDVRNLEGPLN---TFRTRTPINNLAFSQRGL-LATS-RGNIVEFLKP-----------------P  244 (315)
Q Consensus       187 ~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~g~-~~~~-~~~~i~~~~~-----------------~  244 (315)
                      .++++.+..+.|..+++... ....   .+........++++++|. +++. .++.|..++|                 +
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDST-DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTT-SCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEE
T ss_pred             ceeeecCCCCeEEecccccc-ccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCce
Confidence            34555567788888888764 2222   222233578899999995 4443 4677776555                 5


Q ss_pred             ceee---ccccccccc
Q psy9936         245 EINF---EPRRKANKA  257 (315)
Q Consensus       245 ~~~~---~~~~~~~~~  257 (315)
                      .++|   ++|++.|..
T Consensus       255 ~vafg~~~~D~~~Lyv  270 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYV  270 (302)
T ss_dssp             EEEECCSTTTTTEEEE
T ss_pred             EEEEcCCCCCCCEEEE
Confidence            6778   566665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.30  E-value=9.8e-10  Score=91.69  Aligned_cols=183  Identities=11%  Similarity=0.021  Sum_probs=111.4

Q ss_pred             EEEEEcC--CCeEEEE--EccCceEEE--E--ecCCCceeEEEEeecCcEEEEEeCCeEEEEeC--CCCEEEEee--cCC
Q psy9936          24 HLLLGGK--RGHVAAF--DWVRKTLAC--E--MNVMEEVYDIKWLHLETMFAVAQKDWVYIYDN--QGIELHCLK--VLN   91 (315)
Q Consensus        24 ~l~~~~~--dg~i~v~--~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~--~~~~~~~~~--~~~   91 (315)
                      .|++|+.  .+.|+++  |.+++++..  .  ......+..++|+|++++|.++..+.+..|.+  ++.......  ...
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCC
Confidence            3556643  5567665  445555422  2  22444567899999999998888888888876  333332222  224


Q ss_pred             ceEEEEEcCCCceEE--EEc-CCCeEEEEEccC-C------------eE---EEEe-ccCCCCeEEEEEcCCCCEEEEEc
Q psy9936          92 KVTRMEFLPYHFLLA--TAS-EEGYLSWLDTSI-G------------KI---VSDF-SAKKGKLSVMTQNPYNACICLGH  151 (315)
Q Consensus        92 ~v~~~~~~~~~~~l~--~~~-~d~~i~~~d~~~-~------------~~---~~~~-~~~~~~v~~~~~~p~~~~l~~~~  151 (315)
                      ....+.++++++.++  ++. ..+++..+.+.. +            ..   .... ......+.++.|+|+|+++++++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            456677888887433  332 234555544321 1            11   1110 11223478999999999887775


Q ss_pred             C-CCeEEEEcCCCCccee---Eee--cccccEEEEEECCCCCEEEEee-CCCcEEEEEccCC
Q psy9936         152 R-NGTVTMWSPTVQKPLA---SLL--CHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNL  206 (315)
Q Consensus       152 ~-d~~i~i~d~~~~~~~~---~~~--~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~  206 (315)
                      . ...|.+|+......+.   ...  ........++|+|+|+++++.. .+++|.+|++...
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4 4578888765432221   111  2345778999999999886555 5788999999765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.3e-09  Score=91.25  Aligned_cols=179  Identities=9%  Similarity=-0.027  Sum_probs=114.8

Q ss_pred             CcEEEEEEcCCCCEEEEEc---------CCCeEEEEEccCceEEEEec---CCCceeEEEEeecCcEEEEEeCCeEEEEe
Q psy9936          11 FGIYRMNYTKNGRHLLLGG---------KRGHVAAFDWVRKTLACEMN---VMEEVYDIKWLHLETMFAVAQKDWVYIYD   78 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~---------~dg~i~v~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~i~i~~   78 (315)
                      ..+....||||+++++...         ..+.+.++|+.++.......   ....+....|||||+.+|...++.|++.+
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~  140 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCA  140 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEES
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEe
Confidence            3566778999999988763         35789999999887654332   23456678999999999999999999998


Q ss_pred             CCCCEEEEeecC---C-----------------ceEEEEEcCCCceEEEEcCC-C-------------------------
Q psy9936          79 NQGIELHCLKVL---N-----------------KVTRMEFLPYHFLLATASEE-G-------------------------  112 (315)
Q Consensus        79 ~~~~~~~~~~~~---~-----------------~v~~~~~~~~~~~l~~~~~d-~-------------------------  112 (315)
                      ..+.....+...   .                 .-.++.|||||+.||....| .                         
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            854333222211   1                 12467899999999876421 1                         


Q ss_pred             --------eEEEEEccCCeEEEEec------cCCCCeEEEEEcCCCCEEEEEc-CC---CeEEEEcCCCCcceeEeec-c
Q psy9936         113 --------YLSWLDTSIGKIVSDFS------AKKGKLSVMTQNPYNACICLGH-RN---GTVTMWSPTVQKPLASLLC-H  173 (315)
Q Consensus       113 --------~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~-~d---~~i~i~d~~~~~~~~~~~~-~  173 (315)
                              .+.++|+.++.......      .....+..+.|+|++++++... .+   ..+.++|..+++....+.. .
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~  300 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence                    24455554432211111      1122367789999998665542 22   3688899999876544432 2


Q ss_pred             cccE----EEEEECCCCCEE
Q psy9936         174 KAGI----QSVAVNHTGTYM  189 (315)
Q Consensus       174 ~~~i----~~~~~sp~g~~l  189 (315)
                      .++|    ....|+|+|+.+
T Consensus       301 ~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         301 EAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             SSCCCCCCCCCEECTTSCSE
T ss_pred             CceEeccCCceeEccCCCee
Confidence            2222    346899999843

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=4.6e-08  Score=78.14  Aligned_cols=173  Identities=12%  Similarity=0.141  Sum_probs=127.2

Q ss_pred             CCCeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEee---cCCceEEEEEcCCCc
Q psy9936          30 KRGHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLK---VLNKVTRMEFLPYHF  103 (315)
Q Consensus        30 ~dg~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~---~~~~v~~~~~~~~~~  103 (315)
                      .++.|.+++. .+.....+.  .......++..+++.++++.. .+.+.+++.++..+..+.   +......+++.++++
T Consensus        91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~  169 (279)
T d1q7fa_          91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE  169 (279)
T ss_dssp             GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             Cccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeecccee
Confidence            3456666664 445454543  334577888888898777765 567899999888776654   336678899999999


Q ss_pred             eEEEEcCCCeEEEEEccCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEcC-CCeEEEEcCCCCcceeEeecc--cccEE
Q psy9936         104 LLATASEEGYLSWLDTSIGKIVSDFS--AKKGKLSVMTQNPYNACICLGHR-NGTVTMWSPTVQKPLASLLCH--KAGIQ  178 (315)
Q Consensus       104 ~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~--~~~i~  178 (315)
                      .+++....+.|.+||.. ++.+..+.  +.......+++.|+|+++++-.. ++.|.+|+. +++.+..+...  .....
T Consensus       170 i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         170 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF  247 (279)
T ss_dssp             EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred             EEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEe
Confidence            88888889999999965 67776663  24455789999999997776543 457999985 47777766532  24578


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEEccCC
Q psy9936         179 SVAVNHTGTYMATSAGDSQLRIWDVRNL  206 (315)
Q Consensus       179 ~~~~sp~g~~l~~~~~d~~i~iwd~~~~  206 (315)
                      .|++.|+|.+++ ++.++.|++|.....
T Consensus       248 ~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         248 DVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            999999997554 567889999998765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9e-10  Score=94.84  Aligned_cols=212  Identities=10%  Similarity=0.021  Sum_probs=136.7

Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecC----CCceeEEEEeecCcEEEEEeC----------CeEEEEeCC
Q psy9936          15 RMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNV----MEEVYDIKWLHLETMFAVAQK----------DWVYIYDNQ   80 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~----------~~i~i~~~~   80 (315)
                      ...|.+++.++.. ..+|.|.+||..+++....+..    ...+....|+||+++++...+          +.+.++|+.
T Consensus        21 ~~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CCEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            3468888877654 4578899999988876444431    235778889999998887653          578999997


Q ss_pred             CCEEEEeec----CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEecc-CCC-----------------CeEEE
Q psy9936          81 GIELHCLKV----LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA-KKG-----------------KLSVM  138 (315)
Q Consensus        81 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~-----------------~v~~~  138 (315)
                      ......+..    ...+....|||+|+.+|... ++.|.+.+...+..++.... ..+                 .-.++
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            665555532    24556789999999998876 56788888876655544321 111                 12467


Q ss_pred             EEcCCCCEEEEEcCC-C---------------------------------eEEEEcCCCCcceeEee------cccccEE
Q psy9936         139 TQNPYNACICLGHRN-G---------------------------------TVTMWSPTVQKPLASLL------CHKAGIQ  178 (315)
Q Consensus       139 ~~~p~~~~l~~~~~d-~---------------------------------~i~i~d~~~~~~~~~~~------~~~~~i~  178 (315)
                      .|||||++||....| .                                 .+.++|+.++.......      ....-+.
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~  258 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence            899999998875321 1                                 34555655443221111      1122467


Q ss_pred             EEEECCCCCEEEEeeC-C---CcEEEEEccCCCCCeeEeccCC------CceeEEEccCCe
Q psy9936         179 SVAVNHTGTYMATSAG-D---SQLRIWDVRNLEGPLNTFRTRT------PINNLAFSQRGL  229 (315)
Q Consensus       179 ~~~~sp~g~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~g~  229 (315)
                      .+.|+|++++++.... +   ..+.++|..++ .+...+....      .-....|+|||.
T Consensus       259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg-~~~~~~~e~~~~wv~~~~~~p~~~~dg~  318 (465)
T d1xfda1         259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (465)
T ss_dssp             EEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             eeEEcCCCeEEEEEEccccccceEEEEcCCCC-cEEEEEEEcCCceEeccCCceeEccCCC
Confidence            8999999986665432 2   25888899887 5544433221      124567888883

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.16  E-value=8.9e-08  Score=77.03  Aligned_cols=216  Identities=12%  Similarity=0.063  Sum_probs=149.4

Q ss_pred             EEEEEcCCCC-EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCCCEEEEeecC--
Q psy9936          14 YRMNYTKNGR-HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVL--   90 (315)
Q Consensus        14 ~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~--   90 (315)
                      -+..|++... ++.+--..+.|..||..+++.. .+.....+.++++.++|.+++++. ..+.++|..+..+..+...  
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSST
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCCCEEEEEe-CccEEeecccceeeEEeeeec
Confidence            4566887544 4445446788999999888653 455567788999999998887654 5688999876655554321  


Q ss_pred             ----CceEEEEEcCCCceEEEEcC----CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEcCCCeEEEEcC
Q psy9936          91 ----NKVTRMEFLPYHFLLATASE----EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACIC-LGHRNGTVTMWSP  161 (315)
Q Consensus        91 ----~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~i~d~  161 (315)
                          ..++.+.+.|+|.+.++...    .+.-.+|.+..++....... -...+.++|+|+++.++ +-+..+.|..|++
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeee
Confidence                35788999999986665432    23456777777765544432 34568899999998654 5556788998886


Q ss_pred             CCC------cce--eEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-CceeEEEc-cCC--e
Q psy9936         162 TVQ------KPL--ASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFS-QRG--L  229 (315)
Q Consensus       162 ~~~------~~~--~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s-~~g--~  229 (315)
                      ...      +..  ..+.+..+....+++..+|++.++.-..+.|..||.. + +.+..+..+. .+++++|- ||.  +
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G-~~~~~i~lP~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-NHIARYEVPGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C-CEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C-cEeeEecCCCCceEEEEEeCCCCCEE
Confidence            532      111  1122334567889999999988777778889999964 5 7888887765 58999996 454  5


Q ss_pred             EEEEc
Q psy9936         230 LATSR  234 (315)
Q Consensus       230 ~~~~~  234 (315)
                      |+.+.
T Consensus       256 yvTta  260 (295)
T d2ghsa1         256 LVTSA  260 (295)
T ss_dssp             EEEEB
T ss_pred             EEEEC
Confidence            66554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.13  E-value=2.8e-08  Score=78.97  Aligned_cols=219  Identities=11%  Similarity=0.059  Sum_probs=127.7

Q ss_pred             EEcCC--CCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--C-----CeEEEEeCCCCEEEEe
Q psy9936          17 NYTKN--GRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--K-----DWVYIYDNQGIELHCL   87 (315)
Q Consensus        17 ~~s~~--~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~-----~~i~i~~~~~~~~~~~   87 (315)
                      ..|||  |+.+|..+ +|.|.+.|+.+++......+.+.....+|||||+.||...  +     ..|++++..+.....+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            46899  99998764 5679999999998876666778889999999999988653  2     2478888877766665


Q ss_pred             ecC--------CceEEEEEcCCCceEEEEcCC------CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          88 KVL--------NKVTRMEFLPYHFLLATASEE------GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        88 ~~~--------~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                      ...        .......|+|+|+.|+.....      ..+...+...+.....   +........+.+.+..++....+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccc
Confidence            322        245678999999988876332      2355666665544322   22222333333333344433222


Q ss_pred             C-----------eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCC--cEEEEEccCCCCCeeEeccCCCce
Q psy9936         154 G-----------TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDS--QLRIWDVRNLEGPLNTFRTRTPIN  220 (315)
Q Consensus       154 ~-----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~  220 (315)
                      .           ...+....... ......+........++++.. +.....++  .|.++|+.+. . ...+..+....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~-~-~~~lt~~~~~~  236 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGK-D-LRKHTSFTDYY  236 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSC-S-CEECCCCCSSC
T ss_pred             cceeeeeccCCcceeeeeccccc-eeeccCCccccceeeeecccc-ceecccccccceEEEeCCCC-c-eEEeecCCCcc
Confidence            1           11111111111 111222333444556666532 22333333  5777788775 3 33443333344


Q ss_pred             eEEEccCCe-EEEEcCCEEEecCC
Q psy9936         221 NLAFSQRGL-LATSRGNIVEFLKP  243 (315)
Q Consensus       221 ~~~~s~~g~-~~~~~~~~i~~~~~  243 (315)
                      ...|+|||. ++...++.|..+++
T Consensus       237 ~~~~SpDG~~I~f~~~~~l~~~d~  260 (281)
T d1k32a2         237 PRHLNTDGRRILFSKGGSIYIFNP  260 (281)
T ss_dssp             EEEEEESSSCEEEEETTEEEEECT
T ss_pred             cccCcCCCCEEEEEeCCEEEEEEC
Confidence            457999994 56667788877765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.08  E-value=2.4e-07  Score=75.30  Aligned_cols=184  Identities=9%  Similarity=0.016  Sum_probs=126.4

Q ss_pred             CCcEEEEEEcCCCCEEEEEcC----CCeEEEEEccCceEEEEecC---CCceeEEEEeecCcEEEEEeC-------CeEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGK----RGHVAAFDWVRKTLACEMNV---MEEVYDIKWLHLETMFAVAQK-------DWVY   75 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~----dg~i~v~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-------~~i~   75 (315)
                      ...+..+++++||+++++...    .+.+...+..+.........   ....+.+.+.++|++.++...       +.+.
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~  160 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  160 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence            456789999999988776533    23455666665554444432   235788999999998877542       3577


Q ss_pred             EEeCCCCEEEEe-ecCCceEEEEEcCCCceEE-EEcCCCeEEEEEccCC-eEEE-------EeccCCCCeEEEEEcCCCC
Q psy9936          76 IYDNQGIELHCL-KVLNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSIG-KIVS-------DFSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        76 i~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~-~~~~-------~~~~~~~~v~~~~~~p~~~  145 (315)
                      .++.++..+..+ ......+.++|+|+++.|+ +-+..+.|..|++... ....       ...........|++.++|+
T Consensus       161 ~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~  240 (319)
T d2dg1a1         161 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN  240 (319)
T ss_dssp             EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred             EEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC
Confidence            777777655543 3346678899999998654 4466789999998632 1111       1111223367899999999


Q ss_pred             EEEEEcCCCeEEEEcCCCCcceeEeec------ccccEEEEEECCCCCEEEEeeC
Q psy9936         146 CICLGHRNGTVTMWSPTVQKPLASLLC------HKAGIQSVAVNHTGTYMATSAG  194 (315)
Q Consensus       146 ~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~~~~  194 (315)
                      +.++....+.|.+||. .++.+..+..      +...+++++|.|++..+++...
T Consensus       241 l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         241 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            8888888999999996 5888877752      2346789999998877766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.91  E-value=3.4e-06  Score=67.55  Aligned_cols=181  Identities=10%  Similarity=0.015  Sum_probs=125.6

Q ss_pred             eCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCC-----CceeEEEEeecCcEEEEEe-----CCeEEEE
Q psy9936           8 DLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM-----EEVYDIKWLHLETMFAVAQ-----KDWVYIY   77 (315)
Q Consensus         8 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~-----~~~i~i~   77 (315)
                      .....+.++++.++|.++++ +.+ .+.++|..+++........     ..++++.+.|+|++.++..     .+.-.+|
T Consensus        56 ~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          56 ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEe
Confidence            34667889999999877765 445 4899999988765443311     2478889999999887764     1344556


Q ss_pred             eCCCCEEEE-eecCCceEEEEEcCCCceEE-EEcCCCeEEEEEccCC------e--EEEEeccCCCCeEEEEEcCCCCEE
Q psy9936          78 DNQGIELHC-LKVLNKVTRMEFLPYHFLLA-TASEEGYLSWLDTSIG------K--IVSDFSAKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        78 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~------~--~~~~~~~~~~~v~~~~~~p~~~~l  147 (315)
                      .+....+.. .......+.++|+++++.++ +-+..+.|..|++...      +  ....+....+....+++..+|++.
T Consensus       134 ~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         134 HVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             EEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             eecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            553333333 34446678899999987554 5566788999987521      1  122233345568889999999987


Q ss_pred             EEEcCCCeEEEEcCCCCcceeEeecccccEEEEEEC-CCCCEEEE
Q psy9936         148 CLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVN-HTGTYMAT  191 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-p~g~~l~~  191 (315)
                      ++.-..+.|..||. .++.+..+.-....+++++|- |+.+.|+.
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             eeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            77767789999996 478888887655678999995 67665543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.72  E-value=1.3e-06  Score=69.02  Aligned_cols=108  Identities=11%  Similarity=-0.047  Sum_probs=74.6

Q ss_pred             EEEeec--CcEEEEEeCCeEEEEeCCCCEEEEeec-CCceEEEEEcCCCceEEEEcC-C-----CeEEEEEccCCeEEEE
Q psy9936          57 IKWLHL--ETMFAVAQKDWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFLLATASE-E-----GYLSWLDTSIGKIVSD  127 (315)
Q Consensus        57 ~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~~~~~~  127 (315)
                      +..+||  |+.++...++.|++.|+.+.....+.. ...+....|||||+.||.... +     ..|.+++..+++....
T Consensus         4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            346798  999999999999999998777766654 477888999999998886532 1     2477888877765432


Q ss_pred             ecc------CCCCeEEEEEcCCCCEEEEEcC------CCeEEEEcCCCC
Q psy9936         128 FSA------KKGKLSVMTQNPYNACICLGHR------NGTVTMWSPTVQ  164 (315)
Q Consensus       128 ~~~------~~~~v~~~~~~p~~~~l~~~~~------d~~i~i~d~~~~  164 (315)
                      ...      .........|+|+|+.|+....      ...+...+...+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  132 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI  132 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc
Confidence            211      1123567889999998887533      223455555544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.60  E-value=3.5e-05  Score=63.27  Aligned_cols=217  Identities=9%  Similarity=0.029  Sum_probs=137.1

Q ss_pred             EEEEcCCCeEEEEEccCceEEEEecC-C---------------------------------------Cce--eEEEEee-
Q psy9936          25 LLLGGKRGHVAAFDWVRKTLACEMNV-M---------------------------------------EEV--YDIKWLH-   61 (315)
Q Consensus        25 l~~~~~dg~i~v~~~~~~~~~~~~~~-~---------------------------------------~~v--~~~~~~~-   61 (315)
                      +.+|+..|.|+|+-+.+++.+..+.. .                                       +..  ..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            45678889999999988887665420 0                                       011  1344433 


Q ss_pred             --cCcEEEEEe--CCeEEEEeCCCCEEE---EeecCCceEEEEEcCC--CceEEEEcCC------------------CeE
Q psy9936          62 --LETMFAVAQ--KDWVYIYDNQGIELH---CLKVLNKVTRMEFLPY--HFLLATASEE------------------GYL  114 (315)
Q Consensus        62 --~~~~l~~~~--~~~i~i~~~~~~~~~---~~~~~~~v~~~~~~~~--~~~l~~~~~d------------------~~i  114 (315)
                        ||+++.+..  ++.|-+.|++..+..   .++....+..+...++  ..+++.++..                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              788998886  678999999765543   3444466777776554  4566666542                  236


Q ss_pred             EEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCC--------------------------------------CeE
Q psy9936         115 SWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRN--------------------------------------GTV  156 (315)
Q Consensus       115 ~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d--------------------------------------~~i  156 (315)
                      .++|..+++....+... +....+.++|+|+++++.+.+                                      +.+
T Consensus       176 t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            78899888877666543 345678999999988887543                                      122


Q ss_pred             EEEcCCC--C-cceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCC-------CCe----eEeccCCCcee
Q psy9936         157 TMWSPTV--Q-KPLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLE-------GPL----NTFRTRTPINN  221 (315)
Q Consensus       157 ~i~d~~~--~-~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~-------~~~----~~~~~~~~v~~  221 (315)
                      .+.|.+.  + ..+..+.. ......+.++|||+|+++++ .+.++.|+|++...       .+.    ...+...+...
T Consensus       255 ~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh  333 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  333 (459)
T ss_dssp             EEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred             eeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence            3334332  1 12222332 23456789999999887665 68899999997431       111    11222335677


Q ss_pred             EEEccCCeEEEE--cCCEEEecCC
Q psy9936         222 LAFSQRGLLATS--RGNIVEFLKP  243 (315)
Q Consensus       222 ~~~s~~g~~~~~--~~~~i~~~~~  243 (315)
                      -+|+..|..-.+  -|+.|..|+.
T Consensus       334 t~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         334 TAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cccCCCceEEEEeeccceEEEEec
Confidence            899998854444  4888887764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=0.00027  Score=55.07  Aligned_cols=213  Identities=9%  Similarity=-0.025  Sum_probs=133.1

Q ss_pred             cEEEEEEcCCCCEEEEE-cCCCeEEEEEccCceEEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEe
Q psy9936          12 GIYRMNYTKNGRHLLLG-GKRGHVAAFDWVRKTLACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCL   87 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~   87 (315)
                      .+.+++|.+..+.|.-. ...+.|+..++++......+. ....+.++++..-+..|..+.  .+.|.+.++++.....+
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l  116 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence            35678898877766544 456789888887665554444 335688889876555555443  57999999976544333


Q ss_pred             e--cCCceEEEEEcCCCceEEEEcC---CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEcC
Q psy9936          88 K--VLNKVTRMEFLPYHFLLATASE---EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWSP  161 (315)
Q Consensus        88 ~--~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~  161 (315)
                      .  ....+..+++.|...+++....   ...|.-.++............-....++++.+.++.|+.+ ...+.|...|+
T Consensus       117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  196 (263)
T d1npea_         117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (263)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence            2  2367889999998766665432   2335555665333332232333467899999887777555 56789999999


Q ss_pred             CCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC--CceeEEEccC
Q psy9936         162 TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT--PINNLAFSQR  227 (315)
Q Consensus       162 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~  227 (315)
                      +.......+.+.. ...+|++. ++.+..+-...+.|...|..++ +.+..+....  .+.+++..++
T Consensus       197 ~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g-~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         197 AQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTT-EEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCC-ccceEECCCCCCCcceEEEeCC
Confidence            8654333333333 34577775 3434444446678999999887 6555553222  3556665543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=0.00033  Score=54.49  Aligned_cols=221  Identities=10%  Similarity=0.133  Sum_probs=145.5

Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCCC--CEEEEeecC--
Q psy9936          15 RMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQG--IELHCLKVL--   90 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~~--~~~~~~~~~--   90 (315)
                      +.-.+|..+.||.-+ ..++.++|+++.+.+..+...++|.--.|.. .+.|+.-.+..|+-|++++  .+...+..+  
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEEECSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEEEcCCceEEEcccCCCCchhhhhhccc
Confidence            345688888888765 5589999999999999998888887777764 4567777888999999954  344444322  


Q ss_pred             ---CceEEEEEcCCCceEEEEc-------CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCC---CEEEEE---cCCC
Q psy9936          91 ---NKVTRMEFLPYHFLLATAS-------EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYN---ACICLG---HRNG  154 (315)
Q Consensus        91 ---~~v~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~---~~d~  154 (315)
                         ..|-....+++.++++..+       -.|.+.+|..+. +.-+.+++|......+.+.-+.   .+|+.+   ...+
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCc
Confidence               4577777888888876543       246788999874 4556678886655444432211   133333   2236


Q ss_pred             eEEEEcCCCCc----c--ee--Eee----cccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCC-Ccee
Q psy9936         155 TVTMWSPTVQK----P--LA--SLL----CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINN  221 (315)
Q Consensus       155 ~i~i~d~~~~~----~--~~--~~~----~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~  221 (315)
                      .+.+.++.+..    +  .+  .+.    ....-.-++..|+....+..-+.-|.+++||+.++ .++..-+... +|..
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg-t~i~~nRIs~~~iF~  302 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFV  302 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEE
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc-cEEEEeecCCCceEE
Confidence            88888876521    1  11  111    11233457888888888888899999999999999 8877766543 4443


Q ss_pred             EEEcc--CCeEEEEcCCEEE
Q psy9936         222 LAFSQ--RGLLATSRGNIVE  239 (315)
Q Consensus       222 ~~~s~--~g~~~~~~~~~i~  239 (315)
                      .+-+.  .|.+.+...|.+-
T Consensus       303 ~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         303 TAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEE
T ss_pred             eccCCCCceEEEECCCCeEE
Confidence            33222  2356666666553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.30  E-value=0.00017  Score=59.21  Aligned_cols=220  Identities=12%  Similarity=0.083  Sum_probs=133.8

Q ss_pred             EEEEcC---CCCEEEEEc-CCCeEEEEEccCceEEEEe--cCCCceeEEEEee--cCcEEEEEeC---------------
Q psy9936          15 RMNYTK---NGRHLLLGG-KRGHVAAFDWVRKTLACEM--NVMEEVYDIKWLH--LETMFAVAQK---------------   71 (315)
Q Consensus        15 ~~~~s~---~~~~l~~~~-~dg~i~v~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~---------------   71 (315)
                      .+++..   ||++|++.. .+..|.+.|+++.+....+  .....+..++..+  +..++++.+.               
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            555554   788887654 5788999999999886644  4455677776654  4456665442               


Q ss_pred             ----CeEEEEeCCCCEEE-EeecCCceEEEEEcCCCceEEEEcCCC---------------eEEEEEc------------
Q psy9936          72 ----DWVYIYDNQGIELH-CLKVLNKVTRMEFLPYHFLLATASEEG---------------YLSWLDT------------  119 (315)
Q Consensus        72 ----~~i~i~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~~~d~------------  119 (315)
                          +.+..+|.+..++. .+.-......++++|+|+++++.+.+.               .+.+++.            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                23566777654443 344445677899999999998876432               1334443            


Q ss_pred             -----------cCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEc-CCCeEEEEcCCCCc--------ceeEe---ecc
Q psy9936         120 -----------SIG---KIVSDFSAKKGKLSVMTQNPYNACICLGH-RNGTVTMWSPTVQK--------PLASL---LCH  173 (315)
Q Consensus       120 -----------~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~i~d~~~~~--------~~~~~---~~~  173 (315)
                                 +..   ..+..+.. ......+.++|||+++++++ .+.++.|+|++.-.        +...+   ...
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             EEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                       210   11111211 12345688999999887665 58899999986321        11111   112


Q ss_pred             cccEEEEEECCCCCEEEEeeCCCcEEEEEccCC---------CCCeeEeccCCCceeE------EEccCCeEEEEcC
Q psy9936         174 KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNL---------EGPLNTFRTRTPINNL------AFSQRGLLATSRG  235 (315)
Q Consensus       174 ~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~------~~s~~g~~~~~~~  235 (315)
                      .-....-+|+..|.-..+.--|..|.-|++...         ...+..+..|..+-.+      ...|||.++++.+
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            334566789888865555568999999998522         1234455555543333      3467887777653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=0.0022  Score=49.63  Aligned_cols=219  Identities=10%  Similarity=0.010  Sum_probs=131.4

Q ss_pred             CEEEEEcCCCeEEEEEccCceEE-----EEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCEEEEeec--CCc
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLA-----CEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIELHCLKV--LNK   92 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~--~~~   92 (315)
                      .+|+.+. .+.|+-.+++.....     ..+. +...+..++|.+..+.+..+.  .+.|+..++++.....+..  ...
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            4555543 356777776544311     1111 233467788888766666654  5788888887654444332  367


Q ss_pred             eEEEEEcCCCceEE-EEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcC---CCeEEEEcCCCCccee
Q psy9936          93 VTRMEFLPYHFLLA-TASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR---NGTVTMWSPTVQKPLA  168 (315)
Q Consensus        93 v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~i~d~~~~~~~~  168 (315)
                      +.++++..-+..|+ +-...+.|.+.++........+......+..++++|...+++....   ...|.--++.......
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~  160 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence            88999987655555 5556778999998755433333333456889999997776665432   2235555665433332


Q ss_pred             EeecccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEE-cCCEEEecCC
Q psy9936         169 SLLCHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATS-RGNIVEFLKP  243 (315)
Q Consensus       169 ~~~~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~-~~~~i~~~~~  243 (315)
                      .....-..+..+++.+.++.|+.+ ...+.|...++... .....+..-....++++..+..|.+. ..+.|...+.
T Consensus       161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEEC
Confidence            222233566899999887777655 45678999998765 33333333233567877643345554 4566665443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.94  E-value=0.0027  Score=55.00  Aligned_cols=76  Identities=16%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc--eeEEEccCCe-E
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI--NNLAFSQRGL-L  230 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~g~-~  230 (315)
                      |.|.-+|+.+++.+.+... ..+..+-.++-.+.++++|+.|+.++-+|.+++ +.+.++....++  .-+.|..||+ |
T Consensus       444 G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tG-e~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCC-cEEEEEECCCCceecceEEEECCEEE
Confidence            4677888888887766542 211111111224567788999999999999999 999888877654  3477778993 4


Q ss_pred             E
Q psy9936         231 A  231 (315)
Q Consensus       231 ~  231 (315)
                      +
T Consensus       522 i  522 (571)
T d2ad6a1         522 I  522 (571)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.0028  Score=49.13  Aligned_cols=216  Identities=10%  Similarity=-0.006  Sum_probs=135.4

Q ss_pred             EEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCCE----EEE-e-ecCCceEE
Q psy9936          24 HLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGIE----LHC-L-KVLNKVTR   95 (315)
Q Consensus        24 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~----~~~-~-~~~~~v~~   95 (315)
                      +|+.+.. ..|+..++++.+....+.....+..+.|.+.++.|..+.  .+.|...++++..    ... + .....+..
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            4555443 358889998877655556566778899998777666664  5677777764321    111 2 22356778


Q ss_pred             EEEcCCCceEEEE-cCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEc--CCCeEEEEcCCCCcceeEe-e
Q psy9936          96 MEFLPYHFLLATA-SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGH--RNGTVTMWSPTVQKPLASL-L  171 (315)
Q Consensus        96 ~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~i~d~~~~~~~~~~-~  171 (315)
                      +++.+.+..|+.+ ...+.|.+.++........+.........++++|...+|+...  ..+.|.-.++.... ...+ .
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~  160 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT  160 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccc
Confidence            9998765555544 5667899999986555444554556688999999666555443  34567777776433 3333 2


Q ss_pred             cccccEEEEEECCCCCEEEEe-eCCCcEEEEEccCCCCCeeEeccCC---CceeEEEccCCeEEEE-cCCEEEecC
Q psy9936         172 CHKAGIQSVAVNHTGTYMATS-AGDSQLRIWDVRNLEGPLNTFRTRT---PINNLAFSQRGLLATS-RGNIVEFLK  242 (315)
Q Consensus       172 ~~~~~i~~~~~sp~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~-~~~~i~~~~  242 (315)
                      ..-..++.+++.+.+..|+.+ ...+.|...++... ..........   ...++++..+..+.+. .++.|...+
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCC-CEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEE
Confidence            233567899999987766665 45678999998765 4333333322   3567777755455554 456666443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.68  E-value=0.0088  Score=48.56  Aligned_cols=155  Identities=9%  Similarity=-0.068  Sum_probs=98.0

Q ss_pred             CcEEEEEEcCCCCEEEEEcCC-----C------eEEEEEccCceEEEE--ec--CCCceeEEEEeecCcEEEEEe--CCe
Q psy9936          11 FGIYRMNYTKNGRHLLLGGKR-----G------HVAAFDWVRKTLACE--MN--VMEEVYDIKWLHLETMFAVAQ--KDW   73 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~~~d-----g------~i~v~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~--~~~   73 (315)
                      .++.......+|+.++.|+.+     +      .+.+||..+++....  ..  +........+.+++++++.+.  ...
T Consensus        20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            344445566688888887742     1      367899988764321  21  223344567889999999886  358


Q ss_pred             EEEEeCCCCEEEEeecC---CceEEEEEcCCCceEEEEcCC------CeEEEEEccCCeEEEEecc---------CC---
Q psy9936          74 VYIYDNQGIELHCLKVL---NKVTRMEFLPYHFLLATASEE------GYLSWLDTSIGKIVSDFSA---------KK---  132 (315)
Q Consensus        74 i~i~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~---------~~---  132 (315)
                      +.+||............   ..-...+..++|++++.++.+      ..+.+||+.+.+-...-..         +.   
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            99999976665554322   223456778899988888643      3589999987654322110         00   


Q ss_pred             --CCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCc
Q psy9936         133 --GKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK  165 (315)
Q Consensus       133 --~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~  165 (315)
                        ..-..+..-++|+.++.++..+.+.++|..+..
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence              001112334577778888888888888887664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.47  E-value=0.018  Score=46.62  Aligned_cols=217  Identities=8%  Similarity=0.017  Sum_probs=117.8

Q ss_pred             EEEEcCCCCEEEEEcCC-CeEEEEEccCceEEEEec--CCCceeEEEEeecCcEEEEEeC-------CeEEEEeCCCCEE
Q psy9936          15 RMNYTKNGRHLLLGGKR-GHVAAFDWVRKTLACEMN--VMEEVYDIKWLHLETMFAVAQK-------DWVYIYDNQGIEL   84 (315)
Q Consensus        15 ~~~~s~~~~~l~~~~~d-g~i~v~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-------~~i~i~~~~~~~~   84 (315)
                      +.++.++|++++.|+.+ ..+.+||..+......-.  ....-...+..+||++++.+..       ..+.+||+.....
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            45788999999888655 579999998887654322  2222345677789998888752       3689999977765


Q ss_pred             EEeecCC----------------ceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEe--cc----CCC--CeEEEEE
Q psy9936          85 HCLKVLN----------------KVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDF--SA----KKG--KLSVMTQ  140 (315)
Q Consensus        85 ~~~~~~~----------------~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~----~~~--~v~~~~~  140 (315)
                      ..+....                .-..+...+++..++.+...+.+.+++..+.......  ..    +..  .-.++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (387)
T d1k3ia3         160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY  239 (387)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred             eecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEe
Confidence            5543110                0111223445666777777777777777665433221  10    111  1122222


Q ss_pred             -cCCCCEEEEEcCCC--------eEEEEcCCCCc---ceeE-ee--cccccEEEEEECCCCCEEEEeeCCC---------
Q psy9936         141 -NPYNACICLGHRNG--------TVTMWSPTVQK---PLAS-LL--CHKAGIQSVAVNHTGTYMATSAGDS---------  196 (315)
Q Consensus       141 -~p~~~~l~~~~~d~--------~i~i~d~~~~~---~~~~-~~--~~~~~i~~~~~sp~g~~l~~~~~d~---------  196 (315)
                       ..++++++.|+...        ...+.++....   .... ..  .+...-.+....+||+++++|+.+.         
T Consensus       240 ~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~  319 (387)
T d1k3ia3         240 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  319 (387)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             eccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcE
Confidence             34667777775321        23333322111   1111 10  0111223455678999999987531         


Q ss_pred             --cEEEEEccCCCCCeeEec---cCCCcee-EEEccCCeEEEE
Q psy9936         197 --QLRIWDVRNLEGPLNTFR---TRTPINN-LAFSQRGLLATS  233 (315)
Q Consensus       197 --~i~iwd~~~~~~~~~~~~---~~~~v~~-~~~s~~g~~~~~  233 (315)
                        ++.+||..+.  .-..+.   ....-.+ ....+||++++.
T Consensus       320 ~~~ve~Ydp~~~--~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~  360 (387)
T d1k3ia3         320 VFTPEIYVPEQD--TFYKQNPNSIVRVYHSISLLLPDGRVFNG  360 (387)
T ss_dssp             CCCCEEEEGGGT--EEEECCCCSSCCCTTEEEEECTTSCEEEE
T ss_pred             eceEEEEECCCC--eEEECCCCCCcccceEEEEECCCCEEEEE
Confidence              4788998764  222221   1111123 346789965443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.45  E-value=0.006  Score=49.00  Aligned_cols=180  Identities=13%  Similarity=0.108  Sum_probs=102.7

Q ss_pred             cEEEEEEcCCCCEEEEEcC------------CCeEEEEEccCceEE-EEec-CCC-------ceeEEEEe--ecCc-EEE
Q psy9936          12 GIYRMNYTKNGRHLLLGGK------------RGHVAAFDWVRKTLA-CEMN-VME-------EVYDIKWL--HLET-MFA   67 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~------------dg~i~v~~~~~~~~~-~~~~-~~~-------~v~~~~~~--~~~~-~l~   67 (315)
                      +.-.++..|+|..+++++.            .|.|.++|+.+.... ..+. ...       ....+...  +++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4567888999987766542            388999998765432 1221 111       23444432  2443 233


Q ss_pred             EEe----CCeEEEEeC--CCCEEEE---eecC--CceEEEEEcCCCceEEEEc--C-------------CCeEEEEEccC
Q psy9936          68 VAQ----KDWVYIYDN--QGIELHC---LKVL--NKVTRMEFLPYHFLLATAS--E-------------EGYLSWLDTSI  121 (315)
Q Consensus        68 ~~~----~~~i~i~~~--~~~~~~~---~~~~--~~v~~~~~~~~~~~l~~~~--~-------------d~~i~~~d~~~  121 (315)
                      +..    ..+|.+|++  .+..+..   +.+.  ...+.+.+..++.++++-.  .             -+...+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            322    357888776  3433332   2222  5678999998988877731  1             12233444333


Q ss_pred             CeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEEEEcCCCCcceeEee--cccccEEEEEECCC-CCEEEEe
Q psy9936         122 GKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVTMWSPTVQKPLASLL--CHKAGIQSVAVNHT-GTYMATS  192 (315)
Q Consensus       122 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~sp~-g~~l~~~  192 (315)
                      +....... .-...+.++++||+++|+++ ...+.|++|++.....+....  .-.+.+-.+.+.+. |.+.+.+
T Consensus       196 ~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         196 NDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            33322222 23458999999999877655 557899999987554332221  23455677888764 5555444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.014  Score=44.95  Aligned_cols=203  Identities=9%  Similarity=-0.051  Sum_probs=121.8

Q ss_pred             CcEEEEEEcCCCCEEEEE-cCCCeEEEEEccCce----EEEEec-CCCceeEEEEeecCcEEEEEe--CCeEEEEeCCCC
Q psy9936          11 FGIYRMNYTKNGRHLLLG-GKRGHVAAFDWVRKT----LACEMN-VMEEVYDIKWLHLETMFAVAQ--KDWVYIYDNQGI   82 (315)
Q Consensus        11 ~~v~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~~~i~i~~~~~~   82 (315)
                      ..+.+++|++..+.|.-. ...+.|...++....    ....+. ....+..+++.+.+..|..+.  .+.|.+.++++.
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~  109 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc
Confidence            456678888877766544 345667666654322    111222 234567788877555555543  578999999876


Q ss_pred             EEEEee--cCCceEEEEEcCCCceEEEEc--CCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-cCCCeEE
Q psy9936          83 ELHCLK--VLNKVTRMEFLPYHFLLATAS--EEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG-HRNGTVT  157 (315)
Q Consensus        83 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~  157 (315)
                      ....+.  .......++++|...+++...  ..+.|.-.++............-..+.++++.+.++.|+.+ ...+.|.
T Consensus       110 ~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~  189 (266)
T d1ijqa1         110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (266)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEE
Confidence            544432  236788999999655555443  34567777776433333333334567899999987766655 5578999


Q ss_pred             EEcCCCCcceeEeecc--cccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEecc
Q psy9936         158 MWSPTVQKPLASLLCH--KAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT  215 (315)
Q Consensus       158 i~d~~~~~~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  215 (315)
                      ..|+............  .....++++. .+.++.+-..++.|...+..++ .....+..
T Consensus       190 ~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g-~~~~~~~~  247 (266)
T d1ijqa1         190 SIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG-SDVNLLAE  247 (266)
T ss_dssp             EEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC-CCCEEEEC
T ss_pred             EEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC-cceEEEEc
Confidence            9999755433323222  2345677776 2334444456678888888877 55555443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.43  E-value=0.03  Score=48.29  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=50.9

Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCce--eEEEccCCe
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPIN--NLAFSQRGL  229 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~--~~~~s~~g~  229 (315)
                      |.+.-||+.+++.+.+.... .+...-..+-.|.++++|+.|+.++.+|.+++ +.+.++....++.  -+.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCC-cEeEEEECCCCccccCEEEEECCE
Confidence            35777788887777666522 22111122335778888999999999999999 9998888776543  366777883

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.41  E-value=0.031  Score=48.02  Aligned_cols=125  Identities=19%  Similarity=0.288  Sum_probs=83.1

Q ss_pred             ceEEEEcCCCeEEEEEccCCeEEEEeccCCC-C-----------------------------------eEEEEEcCCCCE
Q psy9936         103 FLLATASEEGYLSWLDTSIGKIVSDFSAKKG-K-----------------------------------LSVMTQNPYNAC  146 (315)
Q Consensus       103 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~-----------------------------------v~~~~~~p~~~~  146 (315)
                      ..++.++.+|.++++|..+|+++........ .                                   -...+++|+..+
T Consensus       315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~  394 (560)
T d1kv9a2         315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL  394 (560)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred             eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence            3677788999999999999987754321100 0                                   013456777666


Q ss_pred             EEEEcC------------------------------------CCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEE
Q psy9936         147 ICLGHR------------------------------------NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMA  190 (315)
Q Consensus       147 l~~~~~------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~  190 (315)
                      ++....                                    .|.+.-||+.+++.+.+... ..+..+-.++-.|.+++
T Consensus       395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF  473 (560)
T d1kv9a2         395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVF  473 (560)
T ss_dssp             EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEE
T ss_pred             eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEE
Confidence            554321                                    25678888888887776652 22222212233466788


Q ss_pred             EeeCCCcEEEEEccCCCCCeeEeccCCCc--eeEEEccCCe
Q psy9936         191 TSAGDSQLRIWDVRNLEGPLNTFRTRTPI--NNLAFSQRGL  229 (315)
Q Consensus       191 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~g~  229 (315)
                      +|+.||.++-+|..++ +.+..+....++  .-+.+..+|+
T Consensus       474 ~G~~dg~l~A~Da~tG-e~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         474 QGTAAGQMHAYSADKG-EALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             EECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTE
T ss_pred             EECCCCcEEEEECCCC-cEeEEEECCCCccccCEEEEECCE
Confidence            8999999999999999 999888877654  3466777883

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.30  E-value=0.027  Score=45.01  Aligned_cols=192  Identities=13%  Similarity=0.182  Sum_probs=115.5

Q ss_pred             CCCCEEEEEcCCCeEEEEEccCceEEEEecCCCceeEEEEee------cCcEEEEEeC-----CeEEEEeC--CCCEEEE
Q psy9936          20 KNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLH------LETMFAVAQK-----DWVYIYDN--QGIELHC   86 (315)
Q Consensus        20 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~-----~~i~i~~~--~~~~~~~   86 (315)
                      |+..+++....++-|++||++ |+.+..+. .+.++.+..-.      ...-++++++     ..|.+|.+  ....+..
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            344566666666679999986 66665553 35556554432      2233444442     36778876  3444443


Q ss_pred             eecC--------CceEEEEE--cCC-Cc-eEEEEcCCCeEEEEEcc---CC----eEEEEeccCCCCeEEEEEcCCCCEE
Q psy9936          87 LKVL--------NKVTRMEF--LPY-HF-LLATASEEGYLSWLDTS---IG----KIVSDFSAKKGKLSVMTQNPYNACI  147 (315)
Q Consensus        87 ~~~~--------~~v~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~v~~~~~~p~~~~l  147 (315)
                      +...        ..++.+++  ++. +. ++++...+|.+..|.+.   .+    +.++.+.. ...+..|.+.+....|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSL  194 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcE
Confidence            3221        24566666  665 43 55667778998888763   22    34555553 4568899999998999


Q ss_pred             EEEcCCCeEEEEcCCC--Cc---ceeEeec--ccccEEEEEEC--CC--CCEEEEeeCCCcEEEEEccCCCCCeeEec
Q psy9936         148 CLGHRNGTVTMWSPTV--QK---PLASLLC--HKAGIQSVAVN--HT--GTYMATSAGDSQLRIWDVRNLEGPLNTFR  214 (315)
Q Consensus       148 ~~~~~d~~i~i~d~~~--~~---~~~~~~~--~~~~i~~~~~s--p~--g~~l~~~~~d~~i~iwd~~~~~~~~~~~~  214 (315)
                      +.+-++..|+.++...  ..   .+....+  ....+..|+.-  ++  |-+|++...+++..|||..+....+..|.
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            9998888787777642  11   1212211  34567777754  33  33455555678899999987435555554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.18  E-value=0.045  Score=45.22  Aligned_cols=197  Identities=11%  Similarity=0.036  Sum_probs=106.0

Q ss_pred             EEEEEEcCCCCEEEEEc-----CCCeEEEEEccCceEEEEecCCCceeEEEEeecCcEEEEEe-C---------------
Q psy9936          13 IYRMNYTKNGRHLLLGG-----KRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQ-K---------------   71 (315)
Q Consensus        13 v~~~~~s~~~~~l~~~~-----~dg~i~v~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---------------   71 (315)
                      +..+++|||++++|.+-     ....|+++|+.+++.+...-.......+.|.+|++.|.... +               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            35668899999988542     22479999999998764322122235688999988776432 1               


Q ss_pred             -CeEEEEeCCC---CEEEEeecC---CceEEEEEcCCCceEEEEcC---CCe--EEEEEccCCe--------EEEEeccC
Q psy9936          72 -DWVYIYDNQG---IELHCLKVL---NKVTRMEFLPYHFLLATASE---EGY--LSWLDTSIGK--------IVSDFSAK  131 (315)
Q Consensus        72 -~~i~i~~~~~---~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~---d~~--i~~~d~~~~~--------~~~~~~~~  131 (315)
                       ..|+.+.+.+   .........   ..+..+..++++++++....   ++.  +.+.|+....        ....+...
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  286 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence             2577777732   222222222   34566778999988764322   223  4455554321        11222222


Q ss_pred             CCCeEEEEEcCCCCEEEEEc---CCCeEEEEcCCCCcc--eeEe-ecccccEEEEEECCCCCEEEEee-CCC--cEEEEE
Q psy9936         132 KGKLSVMTQNPYNACICLGH---RNGTVTMWSPTVQKP--LASL-LCHKAGIQSVAVNHTGTYMATSA-GDS--QLRIWD  202 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~-~~~~~~i~~~~~sp~g~~l~~~~-~d~--~i~iwd  202 (315)
                      .....-+. +.++.+++...   .++.|...++.....  ...+ ..+...+..-.++..+.+|+... .++  .|++++
T Consensus       287 ~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~  365 (430)
T d1qfma1         287 EGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (430)
T ss_dssp             SSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             ccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEE
Confidence            22233222 22233333332   346777777765432  1233 33444454444444555666554 444  588899


Q ss_pred             ccCCCCCee
Q psy9936         203 VRNLEGPLN  211 (315)
Q Consensus       203 ~~~~~~~~~  211 (315)
                      +.++ ....
T Consensus       366 ~~~~-~~~~  373 (430)
T d1qfma1         366 LATG-ALLK  373 (430)
T ss_dssp             TTTC-CEEE
T ss_pred             CCCC-cEEE
Confidence            8876 4433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.042  Score=44.40  Aligned_cols=174  Identities=10%  Similarity=0.018  Sum_probs=101.3

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccC-----------ceEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVR-----------KTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ   80 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~   80 (315)
                      ...-++.++...+++.|+.++ +.|..+..           ....... ....|..++|+.+  .|++..++.+..++..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~-~ip~v~~vafs~d--~l~v~~~~~l~~~~~~  113 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPDVIFVCFHGD--QVLVSTRNALYSLDLE  113 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTTEEEEEEETT--EEEEEESSEEEEEESS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc-CCCCeEEEEeeCC--EEEEEeCCCEEEEEee
Confidence            455677888777888888775 66765321           1111111 1235888888644  5777777888888873


Q ss_pred             C-CEEEE-eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEec-----cCCCCeEEEEEcCCCCEEEEEcCC
Q psy9936          81 G-IELHC-LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS-----AKKGKLSVMTQNPYNACICLGHRN  153 (315)
Q Consensus        81 ~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~d  153 (315)
                      . ..... .....++..+.++|.  .++....++.+.++++..++......     .-.+.+.+++|++.|..++++..+
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence            2 22222 223366788888875  45666678899999998875433211     113557888888888888776433


Q ss_pred             CeEEEE-cCCCCcceeEeecccccEEEEEECCCCCEEEEe
Q psy9936         154 GTVTMW-SPTVQKPLASLLCHKAGIQSVAVNHTGTYMATS  192 (315)
Q Consensus       154 ~~i~i~-d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~  192 (315)
                      . ..+- ++.....+.........+.+|.|-.+..++++-
T Consensus       192 ~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         192 E-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             E-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             c-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            2 2221 111111111001123467889998776666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.13  E-value=0.064  Score=46.11  Aligned_cols=147  Identities=13%  Similarity=0.086  Sum_probs=89.3

Q ss_pred             CEEEEEcCCCeEEEEEccCceEEEEecCC-----CceeEEEEeecCcEEEEEe------CCeEEEEeCC-CCEEEEeecC
Q psy9936          23 RHLLLGGKRGHVAAFDWVRKTLACEMNVM-----EEVYDIKWLHLETMFAVAQ------KDWVYIYDNQ-GIELHCLKVL   90 (315)
Q Consensus        23 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~------~~~i~i~~~~-~~~~~~~~~~   90 (315)
                      ..|+.++.+|.+.-.|.++|+........     ..++.--...++.+++.++      .|.|.-+|+. ++.+......
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            35667788999999999999987665421     1222222223555555443      5789999985 4544433211


Q ss_pred             --------------------------------------Cce-EEEEEcCCCceEEEEcC----------------CCeEE
Q psy9936          91 --------------------------------------NKV-TRMEFLPYHFLLATASE----------------EGYLS  115 (315)
Q Consensus        91 --------------------------------------~~v-~~~~~~~~~~~l~~~~~----------------d~~i~  115 (315)
                                                            ..+ ...++.+...+++.+..                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence                                                  111 23456666666665543                34688


Q ss_pred             EEEccCCeEEEEeccCCCC---------eEEEEEcCCCC---EEEEEcCCCeEEEEcCCCCcceeE
Q psy9936         116 WLDTSIGKIVSDFSAKKGK---------LSVMTQNPYNA---CICLGHRNGTVTMWSPTVQKPLAS  169 (315)
Q Consensus       116 ~~d~~~~~~~~~~~~~~~~---------v~~~~~~p~~~---~l~~~~~d~~i~i~d~~~~~~~~~  169 (315)
                      -.|+++|+.+-.++.....         ........+++   .++.++.+|.+.++|..+++++..
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            8899999988776642211         11122223443   466788899999999999887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.03  E-value=0.084  Score=45.58  Aligned_cols=74  Identities=11%  Similarity=0.167  Sum_probs=52.0

Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc--eeEEEccCCe
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI--NNLAFSQRGL  229 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~g~  229 (315)
                      |.|.-||+.+++.+.... +..+..+-.++-.|.+++.|+.||.++.+|.+++ +.+.++....++  .-+.|..||+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG-e~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCC-cEeeEEECCCCcccCCeEEEECCE
Confidence            568888888888766554 2222222222335678888999999999999999 999888876643  4466777883

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.73  E-value=0.06  Score=46.18  Aligned_cols=81  Identities=16%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccc-cEEEEEECCCCC-EE
Q psy9936         112 GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKA-GIQSVAVNHTGT-YM  189 (315)
Q Consensus       112 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~sp~g~-~l  189 (315)
                      |.+.-+|+.+++.+-...... +..+-.+.-.+.+++.|+.||.++.+|.++|+.+.++..... .-.-+.+..+|+ |+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            467889999998877654321 111112233466788899999999999999999988873221 001134556775 66


Q ss_pred             EEee
Q psy9936         190 ATSA  193 (315)
Q Consensus       190 ~~~~  193 (315)
                      ++.+
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.13  Score=41.45  Aligned_cols=175  Identities=6%  Similarity=-0.049  Sum_probs=100.5

Q ss_pred             CceeEEEEeecCcEEEEEeCCeEEEEeCC-----------CCEEEEeecCCceEEEEEcCCCceEEEEcCCCeEEEEEcc
Q psy9936          52 EEVYDIKWLHLETMFAVAQKDWVYIYDNQ-----------GIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS  120 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~~i~i~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  120 (315)
                      ....-++.++..-++++++...+.|....           +...........|..++|+.+  .+++. .++.+..++..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            35677888887777777776677777631           111111122356888999755  45444 44568888876


Q ss_pred             CCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEee-----cccccEEEEEECCCCCEEEEeeCC
Q psy9936         121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL-----CHKAGIQSVAVNHTGTYMATSAGD  195 (315)
Q Consensus       121 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~sp~g~~l~~~~~d  195 (315)
                      +-........-..++..+.++|.  .++....++.+.++++..++......     .-.+.+.+++|++.|..++++..+
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence            54333333333456788888775  45666678999999998875332211     123567788888888877776433


Q ss_pred             CcEEEE-EccCCCCCeeE-eccCCCceeEEEccCCeEEEE
Q psy9936         196 SQLRIW-DVRNLEGPLNT-FRTRTPINNLAFSQRGLLATS  233 (315)
Q Consensus       196 ~~i~iw-d~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~  233 (315)
                      + ..+- ++... ..+.. ...+..+.++.|-.+..+++.
T Consensus       192 ~-~q~k~~i~~~-~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         192 E-MEKQFEFSLP-SELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             E-EEEEEEECCC-HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             c-eeeccCCCCc-cccCCCcCCCcceeEEEEecCceEEEE
Confidence            2 2111 22111 00000 011224678888877665553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.46  E-value=0.02  Score=49.59  Aligned_cols=73  Identities=21%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             CeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCc--eeEEEccCC
Q psy9936         154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPI--NNLAFSQRG  228 (315)
Q Consensus       154 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~g  228 (315)
                      |.|.-+|+.+++.+.+...+ .++.+-..+-.|.++++|+.||.++-+|.+++ +.+..+....++  .-+.|..+|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETT
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCC-cEeEEEECCCCccccCEEEEECC
Confidence            57888899998887776632 23222223345678888999999999999999 999888877643  347778899

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.43  E-value=0.019  Score=49.62  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=52.7

Q ss_pred             CeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccc----ccEEEEEECCCCC
Q psy9936         112 GYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK----AGIQSVAVNHTGT  187 (315)
Q Consensus       112 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~sp~g~  187 (315)
                      |.+.-||+.+++.+-...... +...=..+..|.++++|+.|+.++.+|.++|+.+.++....    .+   +.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            468889999998887765332 11111223357788889999999999999999998887322    23   34555776


Q ss_pred             -EEEEee
Q psy9936         188 -YMATSA  193 (315)
Q Consensus       188 -~l~~~~  193 (315)
                       |++..+
T Consensus       533 QYv~v~~  539 (573)
T d1kb0a2         533 QYVSVAV  539 (573)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence             555443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.41  E-value=0.03  Score=48.41  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             CCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeeccccc-EEEEEECCCCC-E
Q psy9936         111 EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAG-IQSVAVNHTGT-Y  188 (315)
Q Consensus       111 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~sp~g~-~  188 (315)
                      .|.+.-+|+.+|+.+-....+. ++..-.++..|.++++|+.||.++.+|.++|+.+.+++..... -.-+.+..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999998887765432 2221123345678888999999999999999999888732211 11145667885 5


Q ss_pred             EEEe
Q psy9936         189 MATS  192 (315)
Q Consensus       189 l~~~  192 (315)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.25  E-value=0.16  Score=40.50  Aligned_cols=180  Identities=11%  Similarity=0.122  Sum_probs=102.1

Q ss_pred             cCcEEEEEe-CCeEEEEeCCCCEEEEeecCCceEEEEEc------CCCceEEEEcC--C--CeEEEEEccC-CeEEEEec
Q psy9936          62 LETMFAVAQ-KDWVYIYDNQGIELHCLKVLNKVTRMEFL------PYHFLLATASE--E--GYLSWLDTSI-GKIVSDFS  129 (315)
Q Consensus        62 ~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--~~i~~~d~~~-~~~~~~~~  129 (315)
                      +..+++++. .+-|++||++|+.+..+. .+.++.+..-      ....-+++++.  +  .+|.+|.+.. ...+..+.
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            344555444 446999999998887654 3455554433      22223455542  2  3577887752 33344333


Q ss_pred             cC-------CCCeEEEEE--cCC-CC-EEEEEcCCCeEEEEcCC---CC----cceeEeecccccEEEEEECCCCCEEEE
Q psy9936         130 AK-------KGKLSVMTQ--NPY-NA-CICLGHRNGTVTMWSPT---VQ----KPLASLLCHKAGIQSVAVNHTGTYMAT  191 (315)
Q Consensus       130 ~~-------~~~v~~~~~--~p~-~~-~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~sp~g~~l~~  191 (315)
                      ..       ...++.+|+  +|. |. ++++...+|.+..|.+.   .+    +.++.+. ....+..+.+.+....|+.
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEE
Confidence            21       123566666  664 44 55667778998888763   22    2344454 4567888999999889999


Q ss_pred             eeCCCcEEEEEccCCC-CCee---EeccC---CCceeEEEcc----CCeEEEE--cCCEEEecCC
Q psy9936         192 SAGDSQLRIWDVRNLE-GPLN---TFRTR---TPINNLAFSQ----RGLLATS--RGNIVEFLKP  243 (315)
Q Consensus       192 ~~~d~~i~iwd~~~~~-~~~~---~~~~~---~~v~~~~~s~----~g~~~~~--~~~~i~~~~~  243 (315)
                      +-.+.-|..++..... ....   .....   ..+-.++.-.    +|.+++|  ++++..+++.
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr  261 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER  261 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence            9888766666654210 1111   11111   2355565432    3466666  4677776643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.65  E-value=0.46  Score=39.20  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEE--EEec------cCCCCeEEEEEcCC
Q psy9936          90 LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV--SDFS------AKKGKLSVMTQNPY  143 (315)
Q Consensus        90 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~------~~~~~v~~~~~~p~  143 (315)
                      ....++|+|.|++.+|++--..|.|++++..++...  ..+.      ...+....|+++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            467789999999988877656789999987776433  2221      12345788999995

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.55  E-value=0.4  Score=37.88  Aligned_cols=177  Identities=9%  Similarity=0.075  Sum_probs=99.4

Q ss_pred             eeEEEEeecCcEEEEEe-------------CCeEEEEeCCCC--EEEEeecC--------CceEEEEE--cCCCc-eEEE
Q psy9936          54 VYDIKWLHLETMFAVAQ-------------KDWVYIYDNQGI--ELHCLKVL--------NKVTRMEF--LPYHF-LLAT  107 (315)
Q Consensus        54 v~~~~~~~~~~~l~~~~-------------~~~i~i~~~~~~--~~~~~~~~--------~~v~~~~~--~~~~~-~l~~  107 (315)
                      .-++...|+|..++++.             .|.|.++|+...  ....+...        -....+..  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            34566677777666553             278999998432  22222111        12344443  44554 3444


Q ss_pred             E---cCCCeEEEEEccCC--eEE--EEecc-CCCCeEEEEEcCCCCEEEEEc-----------------CCCeEEEEcCC
Q psy9936         108 A---SEEGYLSWLDTSIG--KIV--SDFSA-KKGKLSVMTQNPYNACICLGH-----------------RNGTVTMWSPT  162 (315)
Q Consensus       108 ~---~~d~~i~~~d~~~~--~~~--~~~~~-~~~~v~~~~~~p~~~~l~~~~-----------------~d~~i~i~d~~  162 (315)
                      .   ....+|.+|++...  +..  ..+.. .....+.+++..+|.+++|-.                 .-+.+.-||. 
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-
Confidence            3   24567888887543  222  22221 123478899888998888732                 1133444443 


Q ss_pred             CCcceeEeecccccEEEEEECCCCCEEEEee-CCCcEEEEEccCCCCCeeE---eccCCCceeEEEcc-CCe-EEEEc
Q psy9936         163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSA-GDSQLRIWDVRNLEGPLNT---FRTRTPINNLAFSQ-RGL-LATSR  234 (315)
Q Consensus       163 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~-~g~-~~~~~  234 (315)
                       ++ .......-...+.|+++||+++|+++. ..+.|++|++... ..+..   +..+..+-.+.+.+ +|. ++++.
T Consensus       196 -~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~-~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         196 -ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-WTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             -SC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             -Cc-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC-cccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence             32 222222335678999999998776664 5678999999754 33322   23344467788875 453 44443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.13  E-value=0.84  Score=39.07  Aligned_cols=189  Identities=12%  Similarity=0.081  Sum_probs=109.3

Q ss_pred             CCCEEEEEcCCCeEEEEEc-cCceEEEEecCCCc------------eeEEEEeec----CcEEEEE-eCCeEEEEeCC-C
Q psy9936          21 NGRHLLLGGKRGHVAAFDW-VRKTLACEMNVMEE------------VYDIKWLHL----ETMFAVA-QKDWVYIYDNQ-G   81 (315)
Q Consensus        21 ~~~~l~~~~~dg~i~v~~~-~~~~~~~~~~~~~~------------v~~~~~~~~----~~~l~~~-~~~~i~i~~~~-~   81 (315)
                      +|.++++++..+.+...|. ++|+.+..+.+...            ...+++.++    +..+..+ .|+.|.-.|.. +
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3444444455577888886 57988877653211            134555443    2234444 58899999984 5


Q ss_pred             CEEEEeecC-----CceEE-EEEcCCCceEEEEcC------CCeEEEEEccCCeEEEEeccCC-----------------
Q psy9936          82 IELHCLKVL-----NKVTR-MEFLPYHFLLATASE------EGYLSWLDTSIGKIVSDFSAKK-----------------  132 (315)
Q Consensus        82 ~~~~~~~~~-----~~v~~-~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~-----------------  132 (315)
                      +.+......     ..++. ..+.  +..++++..      .|.|.-||..+|+.+-++....                 
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  219 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             ceeccccccccccccccccCCcEE--CCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence            554444321     11111 1111  334555542      4889999999999887753211                 


Q ss_pred             --------------------C-CeEEEEEcCCCCEEEEEcC----------------CCeEEEEcCCCCcceeEeec--c
Q psy9936         133 --------------------G-KLSVMTQNPYNACICLGHR----------------NGTVTMWSPTVQKPLASLLC--H  173 (315)
Q Consensus       133 --------------------~-~v~~~~~~p~~~~l~~~~~----------------d~~i~i~d~~~~~~~~~~~~--~  173 (315)
                                          . .-..+++.+...+++.+..                ...|.-.|+++++.+..++.  |
T Consensus       220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~  299 (596)
T d1w6sa_         220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (596)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceec
Confidence                                0 0123455666666655432                24578889999998877653  2


Q ss_pred             cc-------cEEEEE-ECCCCC---EEEEeeCCCcEEEEEccCCCCCeeE
Q psy9936         174 KA-------GIQSVA-VNHTGT---YMATSAGDSQLRIWDVRNLEGPLNT  212 (315)
Q Consensus       174 ~~-------~i~~~~-~sp~g~---~l~~~~~d~~i~iwd~~~~~~~~~~  212 (315)
                      ..       .+.-+. ...+|+   .++....+|.+.++|..++ +++..
T Consensus       300 D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG-~~i~~  348 (596)
T d1w6sa_         300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSA  348 (596)
T ss_dssp             CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred             cccCCccccceeeeeccccccccccceeccccccceeeecCCCC-ceeee
Confidence            21       122222 123443   6778889999999999988 66644

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.69  E-value=0.91  Score=37.31  Aligned_cols=51  Identities=8%  Similarity=0.131  Sum_probs=38.2

Q ss_pred             CCceeEEEEeecCcEEEEEe-CCeEEEEeCCCCEEEEeec----------CCceEEEEEcCC
Q psy9936          51 MEEVYDIKWLHLETMFAVAQ-KDWVYIYDNQGIELHCLKV----------LNKVTRMEFLPY  101 (315)
Q Consensus        51 ~~~v~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~----------~~~v~~~~~~~~  101 (315)
                      -...++|+|.|++++|++-. .|.|++++..+.....+..          ......++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            35678999999999999885 7999999986554443321          145678999996

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=1.1  Score=33.73  Aligned_cols=168  Identities=10%  Similarity=0.004  Sum_probs=78.5

Q ss_pred             eEEEEEccCceEEEEecCCCc-eeEEEEeecCcEEEEEe----------CCeEEEEeCCCCEEEEeecC----CceEEEE
Q psy9936          33 HVAAFDWVRKTLACEMNVMEE-VYDIKWLHLETMFAVAQ----------KDWVYIYDNQGIELHCLKVL----NKVTRME   97 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----------~~~i~i~~~~~~~~~~~~~~----~~v~~~~   97 (315)
                      .+.+||..+++....-..+.+ .......-++.+++.|+          -..+.+||........+...    ....++ 
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~-   98 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG-   98 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE-
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc-
Confidence            588999999876554222221 11122233566666543          13678888876666554422    111222 


Q ss_pred             EcCCCceEEEEcCCCe-----EEEEEccCCeEEEEeccCC--CCeEEEEEcCCCCEEEEEcCC-----CeEEEEcCCCCc
Q psy9936          98 FLPYHFLLATASEEGY-----LSWLDTSIGKIVSDFSAKK--GKLSVMTQNPYNACICLGHRN-----GTVTMWSPTVQK  165 (315)
Q Consensus        98 ~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~~~d-----~~i~i~d~~~~~  165 (315)
                       ..+++.++.++.++.     ...+|..+......-....  .... +... ++..++.|+.+     ..+..||..+.+
T Consensus        99 -~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~  175 (288)
T d1zgka1          99 -VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE  175 (288)
T ss_dssp             -EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             -ccceeeEEecceecccccceeeeeccccCccccccccccccccce-eeee-eecceEecCcccccccceEEEeeccccc
Confidence             225666665544333     4456766554322111111  1112 2222 34455555543     357788877653


Q ss_pred             ceeEeecc--cccEEEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         166 PLASLLCH--KAGIQSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       166 ~~~~~~~~--~~~i~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                      ... ....  .....+... .++..++.|+.++     ....+|..+.
T Consensus       176 ~~~-~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~  221 (288)
T d1zgka1         176 WRM-ITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETE  221 (288)
T ss_dssp             EEE-CCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ccc-ccccccccccccccc-eeeeEEEecCccccccccceeeeeecce
Confidence            221 1111  111112222 2355666665443     4667776654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=1.2  Score=33.54  Aligned_cols=171  Identities=10%  Similarity=-0.005  Sum_probs=79.0

Q ss_pred             eEEEEEccCceEEEEecCC-CceeEEEEeecCcEEEEEe-C-----CeEEEEeCCCCEEEEeecCC---ceEEEEEcCCC
Q psy9936          33 HVAAFDWVRKTLACEMNVM-EEVYDIKWLHLETMFAVAQ-K-----DWVYIYDNQGIELHCLKVLN---KVTRMEFLPYH  102 (315)
Q Consensus        33 ~i~v~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~-----~~i~i~~~~~~~~~~~~~~~---~v~~~~~~~~~  102 (315)
                      .+.+||..+.+....-... ..-...+...++++++.+. +     .....++.............   .-.++... ++
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~  149 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NR  149 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT
T ss_pred             hhhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-ee
Confidence            5677887776654332211 1111222233666665543 2     34566777655544432221   11122222 34


Q ss_pred             ceEEEEcCC-----CeEEEEEccCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEcCC-----CeEEEEcCCCCcceeEee
Q psy9936         103 FLLATASEE-----GYLSWLDTSIGKIVSDFSAK-KGKLSVMTQNPYNACICLGHRN-----GTVTMWSPTVQKPLASLL  171 (315)
Q Consensus       103 ~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~  171 (315)
                      ..++.|+.+     ..+..||..+.+....-... .....+... .++.+++.|+.+     .....+|..+.+....-.
T Consensus       150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             cceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC
Confidence            455555443     34788888766433221111 111112222 235566666544     356777776654222111


Q ss_pred             cccccE-EEEEECCCCCEEEEeeCCC-----cEEEEEccCC
Q psy9936         172 CHKAGI-QSVAVNHTGTYMATSAGDS-----QLRIWDVRNL  206 (315)
Q Consensus       172 ~~~~~i-~~~~~sp~g~~l~~~~~d~-----~i~iwd~~~~  206 (315)
                      ...... .+++. .++++++.|+.++     .+.+||+.+.
T Consensus       229 ~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         229 MKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            111111 12222 3677888877554     3778888764

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=92.27  E-value=0.79  Score=32.55  Aligned_cols=132  Identities=9%  Similarity=-0.013  Sum_probs=76.5

Q ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEccCceE------EEEecC--CCceeEEEEeecCcEEEEEeCCeEEEEeC-CCC
Q psy9936          12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL------ACEMNV--MEEVYDIKWLHLETMFAVAQKDWVYIYDN-QGI   82 (315)
Q Consensus        12 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~------~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~i~~~-~~~   82 (315)
                      .+.-++|||+|.+.++-.  +.++.=...+..-      ...+..  =....-+.|.|.|-+.+++ ++.++-=.. ++.
T Consensus        41 n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr~~pPtn~  117 (235)
T d1tl2a_          41 NFKFLFLSPGGELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYKASPPQSD  117 (235)
T ss_dssp             TCSEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEEESCCCST
T ss_pred             ceeEEEECCCCcEEEEEC--CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec-CcceecCCcCccc
Confidence            455699999999887753  3444333222211      111111  1235567889999888888 465444333 221


Q ss_pred             E------EEEeecC--CceEEEEEcCCCceEEEEcCCCeEEEEEccCC---------eEEEEeccCCCCeEEEEEcCCCC
Q psy9936          83 E------LHCLKVL--NKVTRMEFLPYHFLLATASEEGYLSWLDTSIG---------KIVSDFSAKKGKLSVMTQNPYNA  145 (315)
Q Consensus        83 ~------~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~p~~~  145 (315)
                      .      ...+...  ..+..+-|.|+|.+.++. .+ .+.-+....+         +.+.  .++-.....+.|+|+|+
T Consensus       118 ~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~-~~-~l~k~~pP~~~~d~WL~~st~ig--r~~w~~~~fi~Fs~dG~  193 (235)
T d1tl2a_         118 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQ-QFYKALPPVSNQDNWLARATKIG--QGGWDTFKFLFFSSVGT  193 (235)
T ss_dssp             TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TT-EEEEECCCSSTTCCHHHHCEEEE--SSSGGGEEEEEECTTSC
T ss_pred             chhhhhhhhhhccCCcCceeEEEECCCceEEEEE-CC-cEEEcCCCCCCCchhhhhhhhhc--cCcccCceEEEECCCCc
Confidence            1      1223322  567889999999776663 33 4666654332         2222  34555577899999999


Q ss_pred             EEEEE
Q psy9936         146 CICLG  150 (315)
Q Consensus       146 ~l~~~  150 (315)
                      +..+-
T Consensus       194 L~~v~  198 (235)
T d1tl2a_         194 LFGVQ  198 (235)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77663

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.92  E-value=2  Score=32.91  Aligned_cols=189  Identities=8%  Similarity=0.002  Sum_probs=109.7

Q ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc-eEEEEec-CC----CceeEEEEeecCcEEEEEe--------CCeE
Q psy9936           9 LQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK-TLACEMN-VM----EEVYDIKWLHLETMFAVAQ--------KDWV   74 (315)
Q Consensus         9 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~-~~----~~v~~~~~~~~~~~l~~~~--------~~~i   74 (315)
                      ++.+|.-=.|-.+ +.|+..+. ..|+-|+++.. .+...+. |.    ..|.....++++++++..+        .|.+
T Consensus       101 ~~e~VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~m  178 (327)
T d1utca2         101 MTDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  178 (327)
T ss_dssp             CSSCCCEEEESSS-SEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred             cCCCcEEEEecCC-CEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEE
Confidence            3445544455443 45665554 46999998543 3444444 22    3466677778888877542        2689


Q ss_pred             EEEeCCCCEEEEeecCC-ceEEEEEcCC--C-ceEEEE---cCCCeEEEEEccCCe--------EEEEec----cCCCCe
Q psy9936          75 YIYDNQGIELHCLKVLN-KVTRMEFLPY--H-FLLATA---SEEGYLSWLDTSIGK--------IVSDFS----AKKGKL  135 (315)
Q Consensus        75 ~i~~~~~~~~~~~~~~~-~v~~~~~~~~--~-~~l~~~---~~d~~i~~~d~~~~~--------~~~~~~----~~~~~v  135 (315)
                      .+|..+.+.-+.+..+. ....+.+.-+  . .+++.+   ...+++++.++....        ....+.    ...+-.
T Consensus       179 QLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFP  258 (327)
T d1utca2         179 QLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  258 (327)
T ss_dssp             EEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCE
T ss_pred             EEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcE
Confidence            99999776655554332 2222222111  1 223222   223678888886421        111111    112335


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEeeCCCcEE
Q psy9936         136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLR  199 (315)
Q Consensus       136 ~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~  199 (315)
                      -+|..++.-..++.-+.-|.+.+||+.++.++..-+-....|...+-+.+..=++....+|.|.
T Consensus       259 vamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         259 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            6788888778888888999999999999998876665556665444444433344444566543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.83  E-value=4.1  Score=32.82  Aligned_cols=193  Identities=6%  Similarity=-0.075  Sum_probs=100.9

Q ss_pred             EEEEEcCCCCEEEEEcCC----------------CeEEEEEccCceE--EEEec-CC--CceeEEEEeecCcEEEEEe--
Q psy9936          14 YRMNYTKNGRHLLLGGKR----------------GHVAAFDWVRKTL--ACEMN-VM--EEVYDIKWLHLETMFAVAQ--   70 (315)
Q Consensus        14 ~~~~~s~~~~~l~~~~~d----------------g~i~v~~~~~~~~--~~~~~-~~--~~v~~~~~~~~~~~l~~~~--   70 (315)
                      ..++|++|++.|+....+                ..|..|.+.+...  ...+. ..  ..+..+..++++++++...  
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~  253 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeec
Confidence            457899999977654322                2577777765432  22333 22  2355667788998876542  


Q ss_pred             --CC--eEEEEeCCCC---------EEEEeecCCceEEEEEcCCCceEEEEc---CCCeEEEEEccCCeE---EEEeccC
Q psy9936          71 --KD--WVYIYDNQGI---------ELHCLKVLNKVTRMEFLPYHFLLATAS---EEGYLSWLDTSIGKI---VSDFSAK  131 (315)
Q Consensus        71 --~~--~i~i~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~---~~~~~~~  131 (315)
                        ..  .+.+.++...         ...............-+.++.+++...   .++.|...++.....   ...+..+
T Consensus       254 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~  333 (430)
T d1qfma1         254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (430)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC
T ss_pred             cCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEeccc
Confidence              22  3445554211         111222222222222233333433332   246677777765421   2223334


Q ss_pred             CCCeEEEEEcCCCCEEEEE-cCCC--eEEEEcCCCCcceeEeecccccEEEEEECCCCCEEEEe--e--CCCcEEEEEcc
Q psy9936         132 KGKLSVMTQNPYNACICLG-HRNG--TVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATS--A--GDSQLRIWDVR  204 (315)
Q Consensus       132 ~~~v~~~~~~p~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~~--~--~d~~i~iwd~~  204 (315)
                      ...+..-.+...+.+|+.. ..++  .|+++++.++..........+.+..+...++...+...  |  .-.++.-+|+.
T Consensus       334 ~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~  413 (430)
T d1qfma1         334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (430)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             CcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence            4445443444445555544 3444  68899998876655444444566666656665544332  2  23578888988


Q ss_pred             CC
Q psy9936         205 NL  206 (315)
Q Consensus       205 ~~  206 (315)
                      ++
T Consensus       414 t~  415 (430)
T d1qfma1         414 KE  415 (430)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=84.05  E-value=5.4  Score=28.18  Aligned_cols=133  Identities=11%  Similarity=0.051  Sum_probs=77.7

Q ss_pred             CceeEEEEeecCcEEEEEeCCeEEEEeCC---CCE----EEEeecC--CceEEEEEcCCCceEEEEcCCCeEEEEEcc--
Q psy9936          52 EEVYDIKWLHLETMFAVAQKDWVYIYDNQ---GIE----LHCLKVL--NKVTRMEFLPYHFLLATASEEGYLSWLDTS--  120 (315)
Q Consensus        52 ~~v~~~~~~~~~~~l~~~~~~~i~i~~~~---~~~----~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--  120 (315)
                      ..+.-+.|+|+|.+.++-.+ .++.=.+.   ++.    ...+...  .....+.|+|.|-+.++.  ++  .+|.-.  
T Consensus        40 ~n~~~i~fsP~G~LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~--~LYr~~pP  114 (235)
T d1tl2a_          40 SNFKFLFLSPGGELYGVLND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KD--KLYKASPP  114 (235)
T ss_dssp             TTCSEEEECTTSCEEEEETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred             cceeEEEECCCCcEEEEECC-eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--Cc--ceecCCcC
Confidence            45778999999999988765 55554442   111    1122222  456678899999666555  35  444322  


Q ss_pred             CCeE------EEEe-ccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc------eeEee-cccccEEEEEECCCC
Q psy9936         121 IGKI------VSDF-SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP------LASLL-CHKAGIQSVAVNHTG  186 (315)
Q Consensus       121 ~~~~------~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~-~~~~~i~~~~~sp~g  186 (315)
                      +.+.      ...+ ...-+.+..+-|.|+|.+.++.+ + .+.-+....+..      -..+. ++-....-+.|+|+|
T Consensus       115 tn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~-~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG  192 (235)
T d1tl2a_         115 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG-Q-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  192 (235)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET-T-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC-C-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCC
Confidence            1110      0011 11223477899999998777633 3 466666443321      12232 455566789999999


Q ss_pred             CEEEE
Q psy9936         187 TYMAT  191 (315)
Q Consensus       187 ~~l~~  191 (315)
                      .+.++
T Consensus       193 ~L~~v  197 (235)
T d1tl2a_         193 TLFGV  197 (235)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            87766

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=81.11  E-value=8.6  Score=28.46  Aligned_cols=219  Identities=13%  Similarity=0.045  Sum_probs=101.9

Q ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEccCc-eEEEEecCCCceeEEEEeecCcEEEEEeCCeEEEEeCC--CCEEEE
Q psy9936          10 QFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRK-TLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQ--GIELHC   86 (315)
Q Consensus        10 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~i~~~~--~~~~~~   86 (315)
                      ...|..++-.  ..+.+... ||.|+.|-.... ++-........+..++- -+...++. .++.++.|...  ++....
T Consensus        25 ~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~-G~~~~~al-~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          25 QSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA-GNYHSLAL-KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE-CSSEEEEE-ETTEEEEEECCTTSTTCCC
T ss_pred             CCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEec-CCCceeee-eeeeeeccCCCcceeeccc
Confidence            4456666542  22333334 788988865432 21111112233444432 12333343 48899999752  221111


Q ss_pred             eecCCceEEEEEcCCCceEEEEcCCCeEEEEEccCCeEEEEeccCCCCeEEEEEcCCCCEEEEEcCCCeEEEEcCCCCcc
Q psy9936          87 LKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKP  166 (315)
Q Consensus        87 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~i~d~~~~~~  166 (315)
                      ......+..++..... .+  ...|+.+..|.-...............|..++-..  ..++ ...++.+..|......+
T Consensus       100 ~~~~~~~~~i~~~~~~-~~--~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~~~-~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_         100 AEARSGVDAIAAGAWA-SY--ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTAL-AVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             GGGGSSCCEEEEETTE-EE--EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEE-EEETTEEEEEECCTTST
T ss_pred             cccccceeEEeeeccc-cc--ccccccceecccCCCCceeeeccCCceEEEEeccc--eeee-eecccceeEeecccCCc
Confidence            1112334444433322 22  22478888887443211111111123344444321  2222 33477888887654333


Q ss_pred             eeEeecccccEEEEEECCCCCEEEEeeCCCcEEEEEccCCCCCeeEeccCCCceeEEEccCCeEEEEcCCEEEecCC
Q psy9936         167 LASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGNIVEFLKP  243 (315)
Q Consensus       167 ~~~~~~~~~~i~~~~~sp~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~i~~~~~  243 (315)
                      +..-......|..|+....  +.+.-. ||.|+-|=.....++-.....-..|..|+-.....++. .|+.|..|--
T Consensus       174 ~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~  246 (273)
T d1jtdb_         174 TTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL-KNGKVIAWGS  246 (273)
T ss_dssp             TSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE-ETTEEEEEST
T ss_pred             ccccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcceEEEE-ECCEEEEECC
Confidence            3222224456777765433  322223 78999996544312221122223466666544433333 4889998863

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=80.50  E-value=8.2  Score=27.84  Aligned_cols=142  Identities=16%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             eeEEEEeecCc-EEEE-EeCCeEEEEeCCCCEEEEeec---CCceEEEEEcCCCceEEE----EcCCCeEEEEEccCCeE
Q psy9936          54 VYDIKWLHLET-MFAV-AQKDWVYIYDNQGIELHCLKV---LNKVTRMEFLPYHFLLAT----ASEEGYLSWLDTSIGKI  124 (315)
Q Consensus        54 v~~~~~~~~~~-~l~~-~~~~~i~i~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~----~~~d~~i~~~d~~~~~~  124 (315)
                      +.-++...+++ ...+ ++.+...+|-+++..+..+..   .+-|+.+.    +++++-    ++......+-|+.+|. 
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----~d~I~G~g~~~g~~~sfF~adl~SG~-  178 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----GDLIAGLGFFGGGRVSLFTSNLSSGG-  178 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----TTEEEEEEEEETTEEEEEEEETTTEE-
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----CCeEEEEeeecCCcceEEEEecccCC-
Confidence            33333333443 3333 346778888887776665443   33333332    222221    1111123333443332 


Q ss_pred             EEEeccCCCCeEEEEEcCCCCEEEEE----cCCCeEEEEcCCCCccee-Eeec------ccccEEEEEECCCCCEEEEee
Q psy9936         125 VSDFSAKKGKLSVMTQNPYNACICLG----HRNGTVTMWSPTVQKPLA-SLLC------HKAGIQSVAVNHTGTYMATSA  193 (315)
Q Consensus       125 ~~~~~~~~~~v~~~~~~p~~~~l~~~----~~d~~i~i~d~~~~~~~~-~~~~------~~~~i~~~~~sp~g~~l~~~~  193 (315)
                      +..+....+.++.....|..+. +++    ++..-| -+|+++++.-. .+..      ..-.|+-+-+.|++++++.+-
T Consensus       179 lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak  256 (313)
T d2hu7a1         179 LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  256 (313)
T ss_dssp             EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEecCCCCcccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe
Confidence            2333444455555566665554 333    222234 55888765322 1111      123566677899999999999


Q ss_pred             CCCcEEEEE
Q psy9936         194 GDSQLRIWD  202 (315)
Q Consensus       194 ~d~~i~iwd  202 (315)
                      .||.-++|.
T Consensus       257 rdG~s~lF~  265 (313)
T d2hu7a1         257 REGRSAVFI  265 (313)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCchheee
Confidence            999988886