Psyllid ID: psy9958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDDEEEEEGEETEEEEEGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVAVVPASSLMGMGATINEHGETG
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHccccccEEEccccEEEccccccccccccHHHHHHcccccccccEEEEEEEEEcccccccccEEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEcccHHHHHHHHHccccccHHHHHHHcccccccEEEcccccEEEEccccccccccccccHHccccccccccEEEEEEEEEEccccccccEEEEEEccccccccccEccccHccccccccccccccc
Coil and Loop (DISEMBL)
mlihidqnpylcdhcdqTFRQKQLLKRHVnlyhnphyvppspkekthkcpeckkafrhkgnllrhmtlhdpdsELIEQQVALKLGrqkkvhiidghkvevipddeeeeegeeteeeeegggeddghqYVVLEVIQVqsedgtqqNVAVVqsedgtqqnvavvpasslmgmgatinehgetg
Flexible Loop (DISEMBL)
mlihidqnpylcdHCDQTFRQKQLLKRHVNLYHNphyvppspkekthKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGrqkkvhiidghkvevipddeeeeegeeteeeeegggeddghQYVVLEVIQVQSEDGTQQNVAvvqsedgtqqnvavvpasslmgmgatinehgetg
Low Complexity Region (SEG)
MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPddeeeeegeeteeeeegggeddgHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVAVVPASSLMGMGATINEHGETG
Disordered region (IsUnstruct)
**IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYV****************AFRHKGNLLRHMTLH****ELIEQQVALKLGRQKKVHIIDGHKVE***************************QYVVLEVIQV*********************************************
Disordered Region (DISOPRED)
MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALK**************************************************************************************************
Disordered Region (DISEMBL)
MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPP********CPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIP*********************DGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVAVVPASSLMGMGATINEHGETG
Disordered Region (DISPRO)
*LI*IDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPD********************DGHQYVVLEVIQVQSEDGTQQNVAVVQSED****NVA**PA**LMGMG**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDDEEEEEGEETEEEEEGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVAVVPASSLMGMGATINEHGETG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q08705	728	Transcriptional repressor	yes	N/A	0.314	0.078	0.435	2e-10
Q61164	736	Transcriptional repressor	yes	N/A	0.320	0.078	0.428	2e-10
P49711	727	Transcriptional repressor	yes	N/A	0.320	0.079	0.428	3e-10
Q9R1D1	737	Transcriptional repressor	yes	N/A	0.320	0.078	0.428	3e-10
A2APF3	636	Transcriptional repressor	no	N/A	0.392	0.111	0.394	4e-09
B2RXC5	579	Zinc finger protein 382 O	no	N/A	0.320	0.100	0.388	3e-08
Q86XN6	746	Zinc finger protein 761 O	no	N/A	0.325	0.079	0.426	2e-07
Q8NI51	663	Transcriptional repressor	no	N/A	0.320	0.087	0.380	2e-07
A0JPL0	549	Zinc finger protein 382 O	no	N/A	0.320	0.105	0.388	2e-07
Q96SR6	550	Zinc finger protein 382 O	no	N/A	0.320	0.105	0.388	3e-07

>sp|Q08705|CTCF_CHICK Transcriptional repressor CTCF OS=Gallus gallus GN=CTCF PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 4   HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
           H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct: 517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query: 64  RH 65
           RH
Sbjct: 572 RH 573

Acts as both a transcriptional activator and repressor of the MYC gene.
Gallus gallus (taxid: 9031)

>sp|Q61164|CTCF_MOUSE Transcriptional repressor CTCF OS=Mus musculus GN=Ctcf PE=1 SV=2

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  +
Sbjct: 516 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTM 570

Query: 63  LRH 65
            RH
Sbjct: 571 ARH 573

Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Acts as transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene. Also binds to the PLK and PIM1 promoters. Acts as a transcriptional activator of APP. Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression. Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription. Seems to act as tumor suppressor. Plays a critical role in the epigenetic regulation. Participates in the allele-specific gene expression at the imprinted IGF2/H19 gene locus. On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2. Plays a critical role in gene silencing over considerable distances in the genome. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones. Inversely, binding to target sites is prevented by CpG methylation. Plays a important role in chromatin remodeling. Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping (By similarity). Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory. Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription. When bound to chromatin, it provides an anchor point for nucleosomes positioning. Seems to be essential for homologous X-chromosome pairing. May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation. May play a role in preventing the propagation of stable methylation at the escape genes from X-inactivation. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. Regulates asynchronous replication of IGF2/H19.

Mus musculus (taxid: 10090)

>sp|P49711|CTCF_HUMAN Transcriptional repressor CTCF OS=Homo sapiens GN=CTCF PE=1 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  +
Sbjct: 516 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTM 570

Query: 63  LRH 65
            RH
Sbjct: 571 ARH 573

Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Acts as transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene. Also binds to the PLK and PIM1 promoters. Acts as a transcriptional activator of APP. Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression. Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription. Seems to act as tumor suppressor. Plays a critical role in the epigenetic regulation. Participates in the allele-specific gene expression at the imprinted IGF2/H19 gene locus. On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2. Plays a critical role in gene silencing over considerable distances in the genome. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones. Inversely, binding to target sites is prevented by CpG methylation. Plays a important role in chromatin remodeling. Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping. Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory. Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription. When bound to chromatin, it provides an anchor point for nucleosomes positioning. Seems to be essential for homologous X-chromosome pairing. May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation. May play a role in preventing the propagation of stable methylation at the escape genes from X- inactivation. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. Regulates asynchronous replication of IGF2/H19.

Homo sapiens (taxid: 9606)

>sp|Q9R1D1|CTCF_RAT Transcriptional repressor CTCF OS=Rattus norvegicus GN=Ctcf PE=2 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  +
Sbjct: 516 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTM 570

Query: 63  LRH 65
            RH
Sbjct: 571 ARH 573

Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. Acts as transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene. Also binds to the PLK and PIM1 promoters. Acts as a transcriptional activator of APP. Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression. Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription. Seems to act as tumor suppressor. Plays a critical role in the epigenetic regulation. Participates in the allele-specific gene expression at the imprinted IGF2/H19 gene locus. On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2. Plays a critical role in gene silencing over considerable distances in the genome. Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones. Inversely, binding to target sites is prevented by CpG methylation. Plays a important role in chromatin remodeling. Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping. Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory. Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription. When bound to chromatin, it provides an anchor point for nucleosomes positioning. Seems to be essential for homologous X-chromosome pairing. May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation. May play a role in preventing the propagation of stable methylation at the escape genes from X-inactivation. Involved in sister chromatid cohesion. Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites. Regulates asynchronous replication of IGF2/H19.

Rattus norvegicus (taxid: 10116)

>sp|A2APF3|CTCFL_MOUSE Transcriptional repressor CTCFL OS=Mus musculus GN=Ctcfl PE=1 SV=1

 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           M +H  + P+ C  C++ FRQKQLL  H+  YH+P++VP       H C +C K F    
Sbjct: 505 MRMHTGEKPFSCLACNKHFRQKQLLTVHLRKYHDPNFVP-----NLHLCLKCDKRFSRWS 559

Query: 61  NLLRHMTLHDPDSELI 76
           NL RH    DP+ E +
Sbjct: 560 NLQRHRKKCDPEHETL 575

Testis-specific DNA binding protein responsible for insulator function, nuclear architecture and transcriptional control, which probably acts by recruiting epigenetic chromatin modifiers. Plays a key role in gene imprinting in male germline, by participating in the establishment of differential methylation at the IGF2/H19 imprinted control region (ICR). Directly binds the unmethylated H19 ICR and recruits the PRMT7 methyltransferase, leading to methylate histone H4 'Arg-3' to form H4R3sme2. This probably leads to recruit de novo DNA methyltransferases at these sites. Seems to act as tumor suppressor. In association with DNMT1 and DNMT3B, involved in activation of BAG1 gene expression by binding to its promoter. Required for dimethylation of H3 lysine 4 (H3K4me2) of MYC and BRCA1 promoters.

Mus musculus (taxid: 10090)

>sp|B2RXC5|ZN382_MOUSE Zinc finger protein 382 OS=Mus musculus GN=Znf382 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           IH  + PY+C  C ++FRQK +L  H  ++           EK++ CP+C KAF  K NL
Sbjct: 486 IHTGEKPYICSDCGKSFRQKAILTVHYRIHTG---------EKSNGCPQCGKAFSRKSNL 536

Query: 63  LRHMTLH 69
           +RH  +H
Sbjct: 537 IRHQKIH 543

Functions as a sequence-specific transcriptional repressor.

Mus musculus (taxid: 10090)

>sp|Q86XN6|ZN761_HUMAN Zinc finger protein 761 OS=Homo sapiens GN=ZNF761 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 2   LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGN 61
           +IH ++ PY C+ C +TFRQK +L RH  L+           EK +KC EC K F HK +
Sbjct: 318 IIHTEEKPYKCNECGKTFRQKSILTRHHRLHTG---------EKPYKCNECGKTFSHKSS 368

Query: 62  LLRHMTLH 69
           L  H  LH
Sbjct: 369 LTCHHRLH 376

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8NI51|CTCFL_HUMAN Transcriptional repressor CTCFL OS=Homo sapiens GN=CTCFL PE=1 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + P+ C  C++ FRQKQLL  H   YH+ +++P       +KC +C K F    NL
Sbjct: 507 THTGEKPFTCLSCNKCFRQKQLLNAHFRKYHDANFIPT-----VYKCSKCGKGFSRWINL 561

Query: 63  LRH 65
            RH
Sbjct: 562 HRH 564

Testis-specific DNA binding protein responsible for insulator function, nuclear architecture and transcriptional control, which probably acts by recruiting epigenetic chromatin modifiers. Plays a key role in gene imprinting in male germline, by participating in the establishment of differential methylation at the IGF2/H19 imprinted control region (ICR). Directly binds the unmethylated H19 ICR and recruits the PRMT7 methyltransferase, leading to methylate histone H4 'Arg-3' to form H4R3sme2. This probably leads to recruit de novo DNA methyltransferases at these sites (By similarity). Seems to act as tumor suppressor. In association with DNMT1 and DNMT3B, involved in activation of BAG1 gene expression by binding to its promoter. Required for dimethylation of H3 lysine 4 (H3K4me2) of MYC and BRCA1 promoters.

Homo sapiens (taxid: 9606)

>sp|A0JPL0|ZN382_RAT Zinc finger protein 382 OS=Rattus norvegicus GN=Znf382 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           IH  + PY+C  C ++FRQK +L  H  ++           EK++ CP+C KAF  K NL
Sbjct: 456 IHTGEKPYVCSDCGKSFRQKAILTVHYRIHTG---------EKSNGCPQCGKAFSRKSNL 506

Query: 63  LRHMTLH 69
           +RH   H
Sbjct: 507 IRHQKTH 513

Functions as a sequence-specific transcriptional repressor.

Rattus norvegicus (taxid: 10116)

>sp|Q96SR6|ZN382_HUMAN Zinc finger protein 382 OS=Homo sapiens GN=ZNF382 PE=2 SV=3

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           IH  + PY+C+ C ++FRQK +L  H  ++           EK++ CP+C KAF  K NL
Sbjct: 457 IHTGEKPYICNECGKSFRQKAILTVHHRIHTG---------EKSNGCPQCGKAFSRKSNL 507

Query: 63  LRHMTLH 69
           +RH   H
Sbjct: 508 IRHQKTH 514

Functions as a sequence-specific transcriptional repressor.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
340716609	516	PREDICTED: zinc finger protein 84-like [	0.850	0.298	0.615	3e-50
242022342	785	zinc finger protein, putative [Pediculus	0.961	0.221	0.573	7e-49
350404265	527	PREDICTED: hypothetical protein LOC10074	0.834	0.286	0.641	1e-48
332021814	731	Transcriptional repressor CTCF [Acromyrm	0.966	0.239	0.589	3e-48
383860283	716	PREDICTED: transcriptional repressor CTC	0.834	0.210	0.635	4e-48
380019440	718	PREDICTED: transcriptional repressor CTC	0.834	0.210	0.629	4e-48
340716607	727	PREDICTED: transcriptional repressor CTC	0.834	0.207	0.635	6e-48
270003692	696	hypothetical protein TcasGA2_TC002961 [T	0.895	0.232	0.589	1e-47
307196622	520	Transcriptional repressor CTCF [Harpegna	0.828	0.288	0.624	2e-47
91078938	679	PREDICTED: similar to transcriptional re	0.895	0.238	0.589	2e-47

>gi|340716609|ref|XP_003396789.1| PREDICTED: zinc finger protein 84-like [Bombus terrestris]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 121/156 (77%), Gaps = 2/156 (1%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CDHC Q+FRQKQLLKRH NLYHNP YVPP+P+EK+H+CPEC+++FRHKG
Sbjct: 273 MLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPAPQEKSHQCPECERSFRHKG 332

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDD--EEEEEGEETEEEEE 118
           NL+RHM +HDP+S + E+Q ALK+GRQKK+ IIDG +VEV+  D   + ++ EE E++  
Sbjct: 333 NLIRHMAVHDPESSIQEKQHALKMGRQKKIQIIDGQRVEVMTGDLATKLKDYEEDEDDMM 392

Query: 119 GGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDG 154
                DG QYVVLEVIQ+    GT Q +AVV +EDG
Sbjct: 393 AVEGSDGQQYVVLEVIQLADNQGTDQQMAVVANEDG 428

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022342|ref|XP_002431599.1| zinc finger protein, putative [Pediculus humanus corporis] gi|212516907|gb|EEB18861.1| zinc finger protein, putative [Pediculus humanus corporis]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 124/178 (69%), Gaps = 4/178 (2%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ P+ CD CDQ FRQKQLLKRH NLYH P YVPP+PKEKTH+CPEC +AFRHKG
Sbjct: 537 MLIHTDQKPFQCDLCDQAFRQKQLLKRHQNLYHTPEYVPPTPKEKTHECPECGRAFRHKG 596

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDDEEEEEGEETEEEEEGG 120
           NL+RH+ +HDP+S   E+ +ALKLGRQKK+  IDG +VEV+  DEE+EE     E    G
Sbjct: 597 NLIRHLAVHDPESATHEKALALKLGRQKKIQFIDGQQVEVLTGDEEDEEAVPDGEVMIHG 656

Query: 121 GEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVAVVPASSLMGMGATINEHG 178
           G+    QYVVLEVIQ+Q E+G +Q VAVV ++      VAV     +     T N +G
Sbjct: 657 GQ----QYVVLEVIQLQDEEGPKQAVAVVANDALPPNAVAVTEQDLINSETITGNPYG 710

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404265|ref|XP_003487054.1| PREDICTED: hypothetical protein LOC100748920 [Bombus impatiens]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/162 (64%), Positives = 120/162 (74%), Gaps = 11/162 (6%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CDHC Q+FRQKQLLKRH NLYHNP YVPP P+EKTH+CPEC++ FRHKG
Sbjct: 275 MLIHTDQKPYQCDHCFQSFRQKQLLKRHYNLYHNPTYVPPPPQEKTHQCPECERPFRHKG 334

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDD--------EEEEEGEE 112
           NL+RHM +HDP+S L E+Q ALK+GRQKK+ IIDG +VEV+  D        E+EEE EE
Sbjct: 335 NLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRVEVMTGDLATKLKGYEDEEEDEE 394

Query: 113 TEEEEEGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDG 154
                EG    DG QYVVLEVIQ+    GT Q +AVV SEDG
Sbjct: 395 DMMAVEGS---DGQQYVVLEVIQLADNQGTDQQMAVVASEDG 433

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021814|gb|EGI62160.1| Transcriptional repressor CTCF [Acromyrmex echinatior]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/185 (58%), Positives = 133/185 (71%), Gaps = 10/185 (5%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CDHC Q+FRQKQLLKRH NLYHNP+YVPP+P+EKTH+CPEC++AFRHKG
Sbjct: 487 MLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPNYVPPAPQEKTHQCPECERAFRHKG 546

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDD-EEEEEGEETEEEEEG 119
           NL+RHM +HDP+S L E+Q ALK+GRQKK+ IIDG +VEV+  D   + +G E EEEEE 
Sbjct: 547 NLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDLASKLKGYEDEEEEED 606

Query: 120 GGE------DDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDG--TQQNVAVVPASSLMGMG 171
             +       DG QYVVLEVIQ+    G  Q +AVV SEDG    Q+     +S + G G
Sbjct: 607 EDDMMAVQGSDGQQYVVLEVIQLADTQGNDQ-MAVVASEDGELVMQDPLTQDSSIVTGTG 665

Query: 172 ATINE 176
             I+E
Sbjct: 666 EEIDE 670

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860283|ref|XP_003705620.1| PREDICTED: transcriptional repressor CTCFL-like [Megachile rotundata]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 121/162 (74%), Gaps = 11/162 (6%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CDHC Q+FRQKQLLKRH NLYHNP YVPP P+EKTH+CPEC++ FRHKG
Sbjct: 475 MLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERPFRHKG 534

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDD-EEEEEGEETEEEE-- 117
           NL+RHM +HDP+S L E+Q ALK+GRQKK+ IIDG +VEV+  D   + +G E EEE+  
Sbjct: 535 NLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRVEVMTGDLASKLKGYEEEEEDED 594

Query: 118 -----EGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDG 154
                EG    DG QYVVLEVIQ+    GT Q +AVV SEDG
Sbjct: 595 DMMAVEGS---DGQQYVVLEVIQLADNQGTDQQMAVVASEDG 633

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019440|ref|XP_003693613.1| PREDICTED: transcriptional repressor CTCFL-like [Apis florea]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 121/162 (74%), Gaps = 11/162 (6%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CDHC Q+FRQKQLLKRH NLYHNP YVPP P+EKTH+CPEC++ FRHKG
Sbjct: 474 MLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERPFRHKG 533

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDD-EEEEEGEETEEEE-- 117
           NL+RHM +HDP+S L E+Q ALK+GRQKK+ IIDG +VEV+  D   + +G E EE++  
Sbjct: 534 NLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRVEVMTGDLASKLKGYEEEEDDED 593

Query: 118 -----EGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDG 154
                EG    DG QYVVLEVIQ+    GT Q +AVV SEDG
Sbjct: 594 DMMAVEGS---DGQQYVVLEVIQLADNQGTDQQMAVVASEDG 632

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716607|ref|XP_003396788.1| PREDICTED: transcriptional repressor CTCFL-like [Bombus terrestris]

 Score =  195 bits (496), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 121/162 (74%), Gaps = 11/162 (6%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CDHC Q+FRQKQLLKRH NLYHNP YVPP P+EKTH+CPEC++ FRHKG
Sbjct: 475 MLIHTDQKPYQCDHCFQSFRQKQLLKRHYNLYHNPTYVPPPPQEKTHQCPECERPFRHKG 534

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDD-EEEEEGEETEEEE-- 117
           NL+RHM +HDP+S L E+Q ALK+GRQKK+ IIDG +VEV+  D   + +G E EEE+  
Sbjct: 535 NLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRVEVMTGDLATKLKGYEDEEEDEE 594

Query: 118 -----EGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDG 154
                EG    DG QYVVLEVIQ+    GT Q +AVV SEDG
Sbjct: 595 DMMAVEGS---DGQQYVVLEVIQLADNQGTDQQMAVVASEDG 633

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003692|gb|EFA00140.1| hypothetical protein TcasGA2_TC002961 [Tribolium castaneum]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/173 (58%), Positives = 124/173 (71%), Gaps = 11/173 (6%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CD CDQ+FRQKQLLKRH NLYHNP Y+PP P+EKTH+CPEC +AFRHKG
Sbjct: 474 MLIHTDQKPYHCDQCDQSFRQKQLLKRHQNLYHNPDYIPPPPREKTHECPECSRAFRHKG 533

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIP--DDEEEEEGEETEEEEE 118
           NL+RHM  HDPD  +  +Q+ LKLGRQKK+ +IDG +VEVIP  + +E+EEGE      E
Sbjct: 534 NLIRHMAAHDPDPTIQRKQMELKLGRQKKIQMIDGQQVEVIPGMESDEDEEGEIDMMAVE 593

Query: 119 GGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVA--VVPASSLMG 169
           G    DG QYVVLEVIQ+   DG +Q  A+V   DG  + +   ++P S L G
Sbjct: 594 GS---DGQQYVVLEVIQLA--DGEEQ--AMVVGGDGNNELLGENILPDSDLNG 639

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196622|gb|EFN78119.1| Transcriptional repressor CTCF [Harpegnathos saltator]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 121/165 (73%), Gaps = 15/165 (9%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           +LIH DQ PY CDHC Q+FRQKQLLKRH NLYHNP YVPP P+EKTH+CPEC +AFRHKG
Sbjct: 274 ILIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPTYVPPPPQEKTHQCPECIRAFRHKG 333

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIPDD-----------EEEEE 109
           NL+RHM +HDP+S L E+Q ALK+GRQKK+ IIDG +VEV+  D           EEEE+
Sbjct: 334 NLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDLTSKFKGYEDEEEEED 393

Query: 110 GEETEEEEEGGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDG 154
            E+T    +G    DG QYVVLEVIQ+    GT Q +AVV SEDG
Sbjct: 394 EEDTMMAVQGS---DGQQYVVLEVIQLADNQGTDQ-MAVVASEDG 434

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078938|ref|XP_973961.1| PREDICTED: similar to transcriptional repressor CTCF [Tribolium castaneum]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/173 (58%), Positives = 124/173 (71%), Gaps = 11/173 (6%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           MLIH DQ PY CD CDQ+FRQKQLLKRH NLYHNP Y+PP P+EKTH+CPEC +AFRHKG
Sbjct: 457 MLIHTDQKPYHCDQCDQSFRQKQLLKRHQNLYHNPDYIPPPPREKTHECPECSRAFRHKG 516

Query: 61  NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVIP--DDEEEEEGEETEEEEE 118
           NL+RHM  HDPD  +  +Q+ LKLGRQKK+ +IDG +VEVIP  + +E+EEGE      E
Sbjct: 517 NLIRHMAAHDPDPTIQRKQMELKLGRQKKIQMIDGQQVEVIPGMESDEDEEGEIDMMAVE 576

Query: 119 GGGEDDGHQYVVLEVIQVQSEDGTQQNVAVVQSEDGTQQNVA--VVPASSLMG 169
           G    DG QYVVLEVIQ+   DG +Q  A+V   DG  + +   ++P S L G
Sbjct: 577 GS---DGQQYVVLEVIQLA--DGEEQ--AMVVGGDGNNELLGENILPDSDLNG 622

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
FB|FBgn0035769	818	CTCF "CTCF" [Drosophila melano	0.552	0.122	0.514	5.1e-25
ZFIN|ZDB-GENE-040624-5	798	ctcf "CCCTC-binding factor (zi	0.314	0.071	0.419	5.4e-12
UNIPROTKB|I3L710	399	LOC100624697 "Uncharacterized	0.453	0.205	0.373	9.5e-11
UNIPROTKB|Q08DH9	727	CTCF "Uncharacterized protein"	0.453	0.112	0.373	2.6e-10
UNIPROTKB|P49711	727	CTCF "Transcriptional represso	0.453	0.112	0.373	2.6e-10
UNIPROTKB|E2RJR9	728	CTCF "Uncharacterized protein"	0.453	0.112	0.373	2.6e-10
MGI|MGI:109447	736	Ctcf "CCCTC-binding factor" [M	0.453	0.111	0.373	2.7e-10
RGD|621344	737	Ctcf "CCCTC-binding factor (zi	0.453	0.111	0.373	2.7e-10
UNIPROTKB|Q9R1D1	737	Ctcf "Transcriptional represso	0.453	0.111	0.373	2.7e-10
UNIPROTKB|F1NFT1	728	CTCF "Transcriptional represso	0.314	0.078	0.435	3.4e-10

FB|FBgn0035769 CTCF "CTCF" [Drosophila melanogaster (taxid:7227)]

 Score = 295 (108.9 bits), Expect = 5.1e-25, P = 5.1e-25
 Identities = 52/101 (51%), Positives = 68/101 (67%)

Query:     1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
             MLIH+D+ P+ CD C Q FRQ+QLL+RH+NL HN  Y PP P+EK HKCP C + F HKG
Sbjct:   541 MLIHLDEKPFHCDQCPQAFRQRQLLRRHMNLVHNEEYQPPEPREKLHKCPSCPREFTHKG 600

Query:    61 NLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHKVEVI 101
              L+RHM  HD  +   E++  LKLGR  ++   DG  + +I
Sbjct:   601 YLMRHMETHDDSANAREKRRRLKLGRNVRLQK-DGTVITLI 640

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0043035 "chromatin insulator sequence binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0007379 "segment specification" evidence=IMP

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP

GO:0043007 "maintenance of rDNA" evidence=IDA

ZFIN|ZDB-GENE-040624-5 ctcf "CCCTC-binding factor (zinc finger protein)" [Danio rerio (taxid:7955)]

 Score = 147 (56.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
 Identities = 26/62 (41%), Positives = 35/62 (56%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C  C++TFRQKQLL  H   YH+P++VP S       C +C K F  +  + 
Sbjct:   557 HTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTS-----FVCTKCGKTFTRRNTMA 611

Query:    64 RH 65
             RH
Sbjct:   612 RH 613

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|I3L710 LOC100624697 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 157 (60.3 bits), Expect = 9.5e-11, P = 9.5e-11
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   189 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 243

Query:    64 RHM-TLHDPDSELIE---QQVALKLGRQKKV 90
             RH      PD    E   +    K GR++K+
Sbjct:   244 RHADNCAGPDGVEGENGGETKKSKRGRKRKM 274

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q08DH9 CTCF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query:    64 RHM-TLHDPDSELIE---QQVALKLGRQKKV 90
             RH      PD    E   +    K GR++K+
Sbjct:   572 RHADNCAGPDGVEGENGGETKKSKRGRKRKM 602

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0043035 "chromatin insulator sequence binding" evidence=IEA

GO:0040030 "regulation of molecular function, epigenetic" evidence=IEA

GO:0035065 "regulation of histone acetylation" evidence=IEA

GO:0031060 "regulation of histone methylation" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA

GO:0010216 "maintenance of DNA methylation" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P49711 CTCF "Transcriptional repressor CTCF" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query:    64 RHM-TLHDPDSELIE---QQVALKLGRQKKV 90
             RH      PD    E   +    K GR++K+
Sbjct:   572 RHADNCAGPDGVEGENGGETKKSKRGRKRKM 602

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0010216 "maintenance of DNA methylation" evidence=IEA

GO:0031060 "regulation of histone methylation" evidence=IEA

GO:0035065 "regulation of histone acetylation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008270 "zinc ion binding" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0000793 "condensed chromosome" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0070602 "regulation of centromeric sister chromatid cohesion" evidence=NAS

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0016584 "nucleosome positioning" evidence=IDA

GO:0043035 "chromatin insulator sequence binding" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0040029 "regulation of gene expression, epigenetic" evidence=IMP

GO:0040030 "regulation of molecular function, epigenetic" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003714 "transcription corepressor activity" evidence=TAS

UNIPROTKB|E2RJR9 CTCF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query:    64 RHM-TLHDPDSELIE---QQVALKLGRQKKV 90
             RH      PD    E   +    K GR++K+
Sbjct:   572 RHADNCAGPDGVEGENGGETKKSKRGRKRKM 602

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0043035 "chromatin insulator sequence binding" evidence=IEA

GO:0040030 "regulation of molecular function, epigenetic" evidence=IEA

GO:0035065 "regulation of histone acetylation" evidence=IEA

GO:0031060 "regulation of histone methylation" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA

GO:0010216 "maintenance of DNA methylation" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000793 "condensed chromosome" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:109447 Ctcf "CCCTC-binding factor" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query:    64 RHM-TLHDPDSELIE---QQVALKLGRQKKV 90
             RH      PD    E   +    K GR++K+
Sbjct:   572 RHADNCAGPDGVEGENGGETKKSKRGRKRKM 602

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0000793 "condensed chromosome" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006306 "DNA methylation" evidence=IDA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=TAS

GO:0010216 "maintenance of DNA methylation" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=ISO;IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0016568 "chromatin modification" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=ISO

GO:0031060 "regulation of histone methylation" evidence=IMP

GO:0035065 "regulation of histone acetylation" evidence=IMP

GO:0040029 "regulation of gene expression, epigenetic" evidence=ISO

GO:0040030 "regulation of molecular function, epigenetic" evidence=ISO

GO:0043035 "chromatin insulator sequence binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|621344 Ctcf "CCCTC-binding factor (zinc finger protein)" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query:    64 RHM-TLHDPDSELIE---QQVALKLGRQKKV 90
             RH      PD    E   +    K GR++K+
Sbjct:   572 RHADNCAGPDGVEGENGGETKKSKRGRKRKM 602

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0000793 "condensed chromosome" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=ISO;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO;TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006306 "DNA methylation" evidence=ISO

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0007059 "chromosome segregation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010216 "maintenance of DNA methylation" evidence=IEA;ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA;ISO

GO:0031060 "regulation of histone methylation" evidence=IEA;ISO

GO:0035065 "regulation of histone acetylation" evidence=IEA;ISO

GO:0040029 "regulation of gene expression, epigenetic" evidence=ISO

GO:0040030 "regulation of molecular function, epigenetic" evidence=IEA;ISO

GO:0043035 "chromatin insulator sequence binding" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

UNIPROTKB|Q9R1D1 Ctcf "Transcriptional repressor CTCF" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 34/91 (37%), Positives = 47/91 (51%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query:    64 RHM-TLHDPDSELIE---QQVALKLGRQKKV 90
             RH      PD    E   +    K GR++K+
Sbjct:   572 RHADNCAGPDGVEGENGGETKKSKRGRKRKM 602

GO:0000793 "condensed chromosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010216 "maintenance of DNA methylation" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA

GO:0031060 "regulation of histone methylation" evidence=IEA

GO:0035065 "regulation of histone acetylation" evidence=IEA

GO:0040030 "regulation of molecular function, epigenetic" evidence=IEA

GO:0043035 "chromatin insulator sequence binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1NFT1 CTCF "Transcriptional repressor CTCF" [Gallus gallus (taxid:9031)]

 Score = 156 (60.0 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query:     4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  + 
Sbjct:   517 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTMA 571

Query:    64 RH 65
             RH
Sbjct:   572 RH 573

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	181
pfam00096	22	pfam00096, zf-C2H2, Zinc finger, C2H2 type	5e-04
smart00355	23	smart00355, ZnF_C2H2, zinc finger	0.004

>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 48 KCPECKKAFRHKGNLLRHMTLH 69
          KCP+C K+F  K NL RH+  H
Sbjct: 1  KCPDCGKSFSRKSNLKRHLRTH 22

The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter. Length = 22

>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 47 HKCPECKKAFRHKGNLLRHMTLH 69
          ++CPEC K F+ K  L  HM  H
Sbjct: 1  YRCPECGKVFKSKSALREHMRTH 23

Length = 23

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG2462|consensus	279		99.82
KOG2462|consensus	279		99.68
KOG3623|consensus	1007		99.54
KOG3623|consensus	1007		99.39
KOG3576|consensus	267		99.35
KOG3576|consensus	267		99.29
PHA02768	55	hypothetical protein; Provisional	99.18
KOG1074|consensus	958		99.18
KOG1074|consensus	958		99.12
PHA00733	128	hypothetical protein	99.05
PHA00732	79	hypothetical protein	98.78
KOG3608|consensus	467		98.76
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.73
PHA00733	128	hypothetical protein	98.71
PHA02768	55	hypothetical protein; Provisional	98.66
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.62
KOG3608|consensus	467		98.57
PHA00616	44	hypothetical protein	98.56
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.51
PHA00616	44	hypothetical protein	98.51
PLN03086	567	PRLI-interacting factor K; Provisional	98.51
KOG3993|consensus	500		98.41
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.35
PLN03086	567	PRLI-interacting factor K; Provisional	98.3
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.17
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.11
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.0
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.92
KOG3993|consensus	500		97.91
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.82
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.73
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.6
PHA00732	79	hypothetical protein	97.6
smart00355	26	ZnF_C2H2 zinc finger.	97.41
smart00355	26	ZnF_C2H2 zinc finger.	97.27
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.02
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.93
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.93
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.83
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.77
KOG2893|consensus	341		96.77
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.71
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.38
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.18
COG5048	467	FOG: Zn-finger [General function prediction only]	95.78
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.71
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	95.11
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.09
PRK04860	160	hypothetical protein; Provisional	94.99
KOG1146|consensus	1406		94.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.84
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	94.78
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.73
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.72
COG4049	65	Uncharacterized protein containing archaeal-type C	94.31
KOG2186|consensus	276		94.03
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	93.95
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	93.76
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	92.75
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	92.21
COG4049	65	Uncharacterized protein containing archaeal-type C	92.18
PF15269	54	zf-C2H2_7: Zinc-finger	92.13
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.01
PRK04860	160	hypothetical protein; Provisional	91.06
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	90.41
KOG4124|consensus	442		89.43
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	89.05
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	88.98
KOG2071|consensus	579		88.92
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	88.83
KOG2785|consensus	390		88.8
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	87.64
KOG4173|consensus	253		87.62
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	87.38
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	87.3
KOG4173|consensus	253		86.59
KOG2785|consensus	390		86.24
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	85.87
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	85.75
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	85.62
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	85.41
smart00531	147	TFIIE Transcription initiation factor IIE.	85.28
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	85.27
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	85.09
KOG2231|consensus	669		84.76
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	84.44
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	84.25
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	84.13
PHA00626	59	hypothetical protein	84.01
COG5048	467	FOG: Zn-finger [General function prediction only]	83.55
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	82.36

>KOG2462|consensus

Probab=99.82  E-value=2.1e-21  Score=148.94  Aligned_cols=82  Identities=26%  Similarity=0.440  Sum_probs=75.1

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      |+|+  -|++|.+|||.|.+.+.|+.|+|+|         +|+|||.|+.|+|+|.-++||+.||++|.+.++|.|..|+
T Consensus       182 rTH~--l~c~C~iCGKaFSRPWLLQGHiRTH---------TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~  250 (279)
T KOG2462|consen  182 RTHT--LPCECGICGKAFSRPWLLQGHIRTH---------TGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCG  250 (279)
T ss_pred             hccC--CCcccccccccccchHHhhcccccc---------cCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchh
Confidence            5666  7899999999999999999999998         8999999999999999999999999999999999999999


Q ss_pred             Hhhhcccceeeec
Q psy9958          82 LKLGRQKKVHIID   94 (181)
Q Consensus        82 ~~~~~~~~~~~~~   94 (181)
                      +.|.+..-+..|.
T Consensus       251 KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  251 KSFALKSYLNKHS  263 (279)
T ss_pred             hHHHHHHHHHHhh
Confidence            9998886555544

>KOG2462|consensus

Probab=99.68  E-value=8.6e-18  Score=129.18  Aligned_cols=59  Identities=31%  Similarity=0.699  Sum_probs=56.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      +|+|||||||.|..|+|.|..+++|+.||++|         ++.|+|+|..|+|+|..++.|.+|...
T Consensus       207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTH---------S~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTH---------SDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cccccCCCCccCCcccchhcchHHHHHHHHhh---------cCCccccCcchhhHHHHHHHHHHhhhh
Confidence            68999999999999999999999999999999         788999999999999999999999753

>KOG3623|consensus

Probab=99.54  E-value=2.1e-15  Score=128.48  Aligned_cols=91  Identities=24%  Similarity=0.443  Sum_probs=82.0

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhh
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKL   84 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~   84 (181)
                      +...+|.|+.|+|.|...+.|.+|.--|         +|.+||+|.+|.|.|+++-.|..|+|+|.|++||.|..|+++|
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEH---------sGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRF  960 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEH---------SGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRF  960 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhh---------cCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhc
Confidence            3456899999999999999999998777         8999999999999999999999999999999999999999999


Q ss_pred             hcccceeeecCcccccCCCC
Q psy9958          85 GRQKKVHIIDGHKVEVIPDD  104 (181)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~  104 (181)
                      ...-....|..|....-...
T Consensus       961 SHSGSYSQHMNHRYSYCKpy  980 (1007)
T KOG3623|consen  961 SHSGSYSQHMNHRYSYCKPY  980 (1007)
T ss_pred             ccccchHhhhccchhcccch
Confidence            98888777888877665443

>KOG3623|consensus

Probab=99.39  E-value=1.1e-13  Score=118.20  Aligned_cols=55  Identities=38%  Similarity=0.771  Sum_probs=54.0

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHH
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      |+|+|||+|.+|.|.|+.+-+|..|+|.|         +|+|||.|..|+|+|.+.+.+.+||.
T Consensus       917 HsGqRPyqC~iCkKAFKHKHHLtEHkRLH---------SGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  917 HSGQRPYQCIICKKAFKHKHHLTEHKRLH---------SGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hcCCCCcccchhhHhhhhhhhhhhhhhhc---------cCCCcchhhhhhhhcccccchHhhhc
Confidence            99999999999999999999999999998         89999999999999999999999996

>KOG3576|consensus

Probab=99.35  E-value=2e-13  Score=100.92  Aligned_cols=74  Identities=24%  Similarity=0.437  Sum_probs=66.7

Q ss_pred             CCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhh
Q psy9958           6 DQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLG   85 (181)
Q Consensus         6 ~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~   85 (181)
                      +...|.|.+|+|.|.-..-|.+|++-|         ...++|.|..|||.|.-.-+|++|+|+|+|-+||.|..|.+.|.
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch---------~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaft  184 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCH---------SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFT  184 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhc---------cHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHH
Confidence            456799999999999999999999987         56789999999999999999999999999999999999999987


Q ss_pred             ccc
Q psy9958          86 RQK   88 (181)
Q Consensus        86 ~~~   88 (181)
                      .+-
T Consensus       185 qrc  187 (267)
T KOG3576|consen  185 QRC  187 (267)
T ss_pred             hhc
Confidence            653

>KOG3576|consensus

Probab=99.29  E-value=1.2e-13  Score=102.03  Aligned_cols=75  Identities=24%  Similarity=0.398  Sum_probs=62.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCC---------
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDP---------   71 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~---------   71 (181)
                      |+-|+..|.|.|..|||.|.....|++|+|+|         +|.+||+|..|+|+|.++-.|..|.+.-++         
T Consensus       137 ~kch~~vkr~lct~cgkgfndtfdlkrh~rth---------tgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yayke  207 (267)
T KOG3576|consen  137 LKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTH---------TGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKE  207 (267)
T ss_pred             hhhccHHHHHHHhhccCcccchhhhhhhhccc---------cCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHH
Confidence            45688899999999999999999999999998         789999999999999999999999765433         


Q ss_pred             --CChhHHHHHHHhh
Q psy9958          72 --DSELIEQQVALKL   84 (181)
Q Consensus        72 --~~~~~~~~~~~~~   84 (181)
                        .+.|.|..|+...
T Consensus       208 rr~kl~vcedcg~t~  222 (267)
T KOG3576|consen  208 RRAKLYVCEDCGYTS  222 (267)
T ss_pred             hhhheeeecccCCCC
Confidence              3445677776543

>PHA02768 hypothetical protein; Provisional

Probab=99.18  E-value=9.1e-12  Score=73.76  Aligned_cols=44  Identities=18%  Similarity=0.446  Sum_probs=39.8

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHH
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL   63 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~   63 (181)
                      -|.|+.||+.|.+.++|.+|+++|         +  ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H---------~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKH---------N--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhc---------C--CcccCCcccceecccceeE
Confidence            389999999999999999999998         3  7999999999999888775

>KOG1074|consensus

Probab=99.18  E-value=7.2e-12  Score=108.63  Aligned_cols=64  Identities=30%  Similarity=0.656  Sum_probs=32.8

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC---cccccCCCchhHHHHHHhcC
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP---ECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~---~C~k~F~~~~~l~~H~~~h~   70 (181)
                      |+|||||||+|++||+.|.++.+|+.||..|...    + .-...|.|+   +|-+.|...-.|..|+++|.
T Consensus       626 rtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~----p-~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~  692 (958)
T KOG1074|consen  626 RTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAK----P-PARVQFSCPSTFICQKKFTNAVTLPQHIRIHL  692 (958)
T ss_pred             hcccCcCccccccccchhccccchhhcccccccC----c-cccccccCCchhhhcccccccccccceEEeec
Confidence            4555555555555555555555555555554321    0 111345555   55555555555555555554

>KOG1074|consensus

Probab=99.12  E-value=1.4e-11  Score=106.85  Aligned_cols=79  Identities=27%  Similarity=0.436  Sum_probs=65.6

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChh----HHH---HH
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSEL----IEQ---QV   80 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~----~~~---~~   80 (181)
                      -|-.|-+|-+....++.|+.|.|+|         +|++||+|.+||+.|.++.||+.||.+|....++    .|.   .|
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtH---------tGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic  674 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTH---------TGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFIC  674 (958)
T ss_pred             Cccceeeeeecccchhhhhhhhhcc---------cCcCccccccccchhccccchhhcccccccCccccccccCCchhhh
Confidence            3678999999999999999999998         8999999999999999999999999998766543    566   67


Q ss_pred             HHhhhcc----cceeeecC
Q psy9958          81 ALKLGRQ----KKVHIIDG   95 (181)
Q Consensus        81 ~~~~~~~----~~~~~~~~   95 (181)
                      ..+|...    .++++|.+
T Consensus       675 ~~kftn~V~lpQhIriH~~  693 (958)
T KOG1074|consen  675 QKKFTNAVTLPQHIRIHLG  693 (958)
T ss_pred             cccccccccccceEEeecC
Confidence            7766443    45666553

>PHA00733 hypothetical protein

Probab=99.05  E-value=1.9e-10  Score=81.00  Aligned_cols=53  Identities=32%  Similarity=0.689  Sum_probs=27.1

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      .+||.|+.|++.|.....|..|++.+           ..+|.|..|++.|.....|..|++.++
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h-----------~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYT-----------EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcC-----------CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            45555555555555555555555432           134555555555555555555554433

>PHA00732 hypothetical protein

Probab=98.78  E-value=3.2e-09  Score=68.41  Aligned_cols=48  Identities=31%  Similarity=0.544  Sum_probs=40.6

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      ||.|..|++.|.+...|+.|++.+|           .++.|+.|+++|.   .|..|.+++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H-----------~~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH-----------TLTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc-----------CCCccCCCCCEeC---ChhhhhcccC
Confidence            7899999999999999999998543           2468999999998   5888986553

>KOG3608|consensus

Probab=98.76  E-value=1.9e-09  Score=85.99  Aligned_cols=72  Identities=28%  Similarity=0.504  Sum_probs=39.5

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCC------------------CCCCCCCCCCcccCCcccccCCCchhHHHHHHh
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNP------------------HYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~------------------~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      ..+|.|..|.|+|.+...|+.|++.|-+-                  +.+..|++.|||+|..|.++|.+.+.|.+|..+
T Consensus       235 ~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~  314 (467)
T KOG3608|consen  235 TNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQV  314 (467)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHh
Confidence            44555555555555555555555554210                  111333556666666666666666666666665


Q ss_pred             cCCCChhHHHH
Q psy9958          69 HDPDSELIEQQ   79 (181)
Q Consensus        69 h~~~~~~~~~~   79 (181)
                      |. +..|.|..
T Consensus       315 HS-~~~y~C~h  324 (467)
T KOG3608|consen  315 HS-KTVYQCEH  324 (467)
T ss_pred             cc-ccceecCC
Confidence            55 44555544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.73  E-value=5.2e-09  Score=53.08  Aligned_cols=26  Identities=42%  Similarity=0.754  Sum_probs=22.7

Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCC
Q psy9958          24 LLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRH   58 (181)
Q Consensus        24 ~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~   58 (181)
                      +|.+|+++|         ++++||.|+.|+++|.+
T Consensus         1 ~l~~H~~~H---------~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTH---------TGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHH---------SSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhc---------CCCCCCCCCCCcCeeCc
Confidence            588999998         78999999999999864

...

>PHA00733 hypothetical protein

Probab=98.71  E-value=1.2e-09  Score=76.95  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=62.0

Q ss_pred             CCceecccchhhccChhhHHHH--HHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhh
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRH--VNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKL   84 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H--~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~   84 (181)
                      ++++.|.+|.+.|.....|..|  ++.+.      +..+.+||.|..|++.|.+...|..|++.|  ..++.|..|+..|
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~------~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F  109 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLL------TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEF  109 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhc------ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCcc
Confidence            6889999999999999888877  32221      114578999999999999999999999976  3468999999888


Q ss_pred             hcccceee
Q psy9958          85 GRQKKVHI   92 (181)
Q Consensus        85 ~~~~~~~~   92 (181)
                      .....+..
T Consensus       110 ~~~~sL~~  117 (128)
T PHA00733        110 RNTDSTLD  117 (128)
T ss_pred             CCHHHHHH
Confidence            76655433

>PHA02768 hypothetical protein; Provisional

Probab=98.66  E-value=5.6e-09  Score=61.89  Aligned_cols=43  Identities=16%  Similarity=0.349  Sum_probs=36.5

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccc
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKK   89 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~   89 (181)
                      .-|.|+.||+.|.+.++|..|+++|+  +++.|..|++.|.+...
T Consensus         4 ~~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~   46 (55)
T PHA02768          4 LGYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGE   46 (55)
T ss_pred             cccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccce
Confidence            35899999999999999999999999  67888888887765443

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.62  E-value=5.2e-08  Score=58.31  Aligned_cols=53  Identities=25%  Similarity=0.521  Sum_probs=42.6

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      .|.|++|++. .....|..|....|.       ...+.+.|++|...+.  .+|..|+..+++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~-------~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHR-------SESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCc-------CCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            5899999995 456789999988875       3456899999998765  499999987653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3608|consensus

Probab=98.57  E-value=1.3e-08  Score=81.35  Aligned_cols=77  Identities=19%  Similarity=0.348  Sum_probs=65.5

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcC-CC--ChhHH
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHD-PD--SELIE   77 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~-~~--~~~~~   77 (181)
                      .|+..|||+|+.|+++|.+.+.|.+|...|         + +..|.|..  |..+|+....+.+|++.++ +.  .+|.|
T Consensus       286 rHs~dkpfKCd~Cd~~c~~esdL~kH~~~H---------S-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~C  355 (467)
T KOG3608|consen  286 RHSKDKPFKCDECDTRCVRESDLAKHVQVH---------S-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYAC  355 (467)
T ss_pred             hhccCCCccccchhhhhccHHHHHHHHHhc---------c-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceee
Confidence            488999999999999999999999999987         3 67899988  9999999999999988765 44  45778


Q ss_pred             HHHHHhhhcccc
Q psy9958          78 QQVALKLGRQKK   89 (181)
Q Consensus        78 ~~~~~~~~~~~~   89 (181)
                      -.|..-|.+...
T Consensus       356 H~Cdr~ft~G~~  367 (467)
T KOG3608|consen  356 HCCDRFFTSGKS  367 (467)
T ss_pred             ecchhhhccchh
Confidence            888777765544

>PHA00616 hypothetical protein

Probab=98.56  E-value=3.5e-08  Score=55.77  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=27.3

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      ||+|..||+.|..++.|.+|++.||         +++++.|..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h---------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH---------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc---------CCCccceeE
Confidence            6888888888888888888888884         567877764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.51  E-value=1.5e-08  Score=51.39  Aligned_cols=21  Identities=33%  Similarity=0.849  Sum_probs=19.2

Q ss_pred             CcccCCCCceecccchhhccC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQ   21 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~   21 (181)
                      |++|+|+|||.|++|++.|.+
T Consensus         6 ~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    6 MRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHSSSSSEEESSSSEEESS
T ss_pred             hhhcCCCCCCCCCCCcCeeCc
Confidence            578999999999999999974

...

>PHA00616 hypothetical protein

Probab=98.51  E-value=2.9e-08  Score=56.11  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ||+|+.||+.|..++.|.+|++.|++.+++.+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            689999999999999999999999999888653

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.51  E-value=3.8e-08  Score=84.27  Aligned_cols=67  Identities=19%  Similarity=0.484  Sum_probs=55.7

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhh
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKL   84 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~   84 (181)
                      .-++.+.|+.|++.|. ...|..|++.+|           ++|.|+ ||+.| .+..|..|+++|.+.+++.|..|.+.+
T Consensus       449 el~~H~~C~~Cgk~f~-~s~LekH~~~~H-----------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        449 EAKNHVHCEKCGQAFQ-QGEMEKHMKVFH-----------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             ccccCccCCCCCCccc-hHHHHHHHHhcC-----------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            3467789999999996 678999999874           788999 99755 568999999999999999999888766


Q ss_pred             h
Q psy9958          85 G   85 (181)
Q Consensus        85 ~   85 (181)
                      .
T Consensus       515 ~  515 (567)
T PLN03086        515 Q  515 (567)
T ss_pred             c
Confidence            3

>KOG3993|consensus

Probab=98.41  E-value=8.9e-08  Score=78.10  Aligned_cols=63  Identities=27%  Similarity=0.522  Sum_probs=43.6

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCC-----CCC-------------------CCCCcccCCcccccCCCchhHHHH
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYV-----PPS-------------------PKEKTHKCPECKKAFRHKGNLLRH   65 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~-----~~~-------------------~~~~~~~C~~C~k~F~~~~~l~~H   65 (181)
                      |+|+.|+|.|+...+|..|+|+|.-..-.     ++.                   .....|.|..|+|.|.+...|+.|
T Consensus       296 YrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKH  375 (500)
T KOG3993|consen  296 YRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKH  375 (500)
T ss_pred             ecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHh
Confidence            78888888888888888888876422110     000                   112358888888888888888888


Q ss_pred             HHhcCCC
Q psy9958          66 MTLHDPD   72 (181)
Q Consensus        66 ~~~h~~~   72 (181)
                      +.+|+..
T Consensus       376 qlthq~~  382 (500)
T KOG3993|consen  376 QLTHQRA  382 (500)
T ss_pred             HHhhhcc
Confidence            7777644

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.35  E-value=1.8e-07  Score=73.82  Aligned_cols=62  Identities=27%  Similarity=0.568  Sum_probs=49.1

Q ss_pred             CCCceeccc--chhhccChhhHHHHHHHhcCCCCCCC----------CCCCCcccCCcccccCCCchhHHHHHH
Q psy9958           6 DQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPP----------SPKEKTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus         6 ~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~----------~~~~~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      ++|||+|++  |.|.|+....|+.|+..-|......+          ..+.|||.|.+|+|+|+.-..|+.|++
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            469999998  99999999999999875452211100          133599999999999999999999865

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.30  E-value=1.9e-07  Score=79.98  Aligned_cols=68  Identities=12%  Similarity=0.210  Sum_probs=57.1

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCC----------chhHHHHHHhcCCCChhHH
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRH----------KGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~----------~~~l~~H~~~h~~~~~~~~   77 (181)
                      +|+.|+ |++.| .+..|..|+++|         ...+++.|..|++.|..          .+.|..|...+ +.+++.|
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~th---------Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C  544 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQAST---------CPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPC  544 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhcc---------CCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEc
Confidence            899999 99766 568999999887         57899999999999952          35899999885 9999999


Q ss_pred             HHHHHhhhcc
Q psy9958          78 QQVALKLGRQ   87 (181)
Q Consensus        78 ~~~~~~~~~~   87 (181)
                      ..|++.+..+
T Consensus       545 ~~Cgk~Vrlr  554 (567)
T PLN03086        545 DSCGRSVMLK  554 (567)
T ss_pred             cccCCeeeeh
Confidence            9998766544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.17  E-value=1e-06  Score=43.10  Aligned_cols=22  Identities=41%  Similarity=0.816  Sum_probs=13.7

Q ss_pred             eecccchhhccChhhHHHHHHH
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      |+|+.|++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.11  E-value=8.5e-07  Score=43.39  Aligned_cols=23  Identities=57%  Similarity=0.964  Sum_probs=21.5

Q ss_pred             ccCCcccccCCCchhHHHHHHhc
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~h   69 (181)
                      |.|+.|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.00  E-value=4.1e-06  Score=40.98  Aligned_cols=23  Identities=30%  Similarity=0.751  Sum_probs=12.9

Q ss_pred             eecccchhhccChhhHHHHHHHh
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |.|++|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666666554

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.92  E-value=5.5e-06  Score=55.21  Aligned_cols=60  Identities=27%  Similarity=0.512  Sum_probs=22.2

Q ss_pred             ecccchhhccChhhHHHHHHHhcCCCCC-----------CCC---CCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958          11 LCDHCDQTFRQKQLLKRHVNLYHNPHYV-----------PPS---PKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        11 ~C~~C~k~f~~~~~L~~H~~~hh~~~~~-----------~~~---~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      .|.+|+..|.....|..|+...|+....           ...   .-...|.|..|++.|.....|..||+.+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            4999999999999999999887754211           000   11236899999999999999999999754

>KOG3993|consensus

Probab=97.91  E-value=1.6e-06  Score=71.02  Aligned_cols=76  Identities=25%  Similarity=0.460  Sum_probs=61.7

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCC-----------------
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPD-----------------   72 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~-----------------   72 (181)
                      |.|..|.-.|.....|..|.-.-         ..-.-|+|+.|+|.|+...||..|.|+|...                 
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~R---------IV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~  338 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPR---------IVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET  338 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCe---------eEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence            89999999999999999995322         1235799999999999999999999998521                 


Q ss_pred             ----------------ChhHHHHHHHhhhcccceeeec
Q psy9958          73 ----------------SELIEQQVALKLGRQKKVHIID   94 (181)
Q Consensus        73 ----------------~~~~~~~~~~~~~~~~~~~~~~   94 (181)
                                      ..|.|..|+++|.++.-++.|.
T Consensus       339 rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHq  376 (500)
T KOG3993|consen  339 RAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQ  376 (500)
T ss_pred             hhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhH
Confidence                            1256999999999987766664

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.90  E-value=5.1e-06  Score=40.63  Aligned_cols=24  Identities=46%  Similarity=0.930  Sum_probs=20.3

Q ss_pred             ccCCcccccCCCchhHHHHHHhcC
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      |.|++|++.|.+...|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999998874

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.82  E-value=7.3e-06  Score=41.61  Aligned_cols=24  Identities=33%  Similarity=0.742  Sum_probs=17.2

Q ss_pred             ceecccchhhccChhhHHHHHHHh
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      ||.|..|++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            567777777777777777777665

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.73  E-value=1.1e-05  Score=40.99  Aligned_cols=26  Identities=31%  Similarity=0.540  Sum_probs=23.9

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ||.|..|++.|.....|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999998764

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.60  E-value=2.4e-05  Score=45.31  Aligned_cols=33  Identities=27%  Similarity=0.566  Sum_probs=23.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCCh
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      ..+.|..|++|+..+.+..+|++|+.++|+.++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            346788999999999999999999988887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PHA00732 hypothetical protein

Probab=97.60  E-value=1.1e-05  Score=52.03  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=32.5

Q ss_pred             cccCCcccccCCCchhHHHHHHh-cCCCChhHHHHHHHhhhc
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTL-HDPDSELIEQQVALKLGR   86 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~-h~~~~~~~~~~~~~~~~~   86 (181)
                      ||.|..|++.|.+..+|..|++. |.+   +.|..|+..|.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~~   39 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYRR   39 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeCC
Confidence            68999999999999999999985 654   478899888863

>smart00355 ZnF_C2H2 zinc finger

Probab=97.41  E-value=0.0001  Score=36.33  Aligned_cols=24  Identities=46%  Similarity=0.934  Sum_probs=17.2

Q ss_pred             ccCCcccccCCCchhHHHHHHhcC
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            467777777777777777777553

>smart00355 ZnF_C2H2 zinc finger

Probab=97.27  E-value=0.00018  Score=35.43  Aligned_cols=23  Identities=35%  Similarity=0.782  Sum_probs=21.4

Q ss_pred             eecccchhhccChhhHHHHHHHh
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            68999999999999999999865

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.02  E-value=0.00076  Score=39.14  Aligned_cols=30  Identities=30%  Similarity=0.624  Sum_probs=22.0

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhcC
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYHN   34 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh~   34 (181)
                      ..+.|..|++|+..+.+..+|++|+..+|.
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            456899999999999999999999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.93  E-value=0.00064  Score=33.29  Aligned_cols=23  Identities=43%  Similarity=0.788  Sum_probs=13.1

Q ss_pred             eecccchhhccChhhHHHHHHHhc
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      |+|+.|+.... +..|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56666666665 666666666654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.93  E-value=0.00043  Score=34.22  Aligned_cols=22  Identities=27%  Similarity=0.860  Sum_probs=13.7

Q ss_pred             eecccchhhccChhhHHHHHHH
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      |.|.+|++.|.+...|+.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566666666666666666554

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.83  E-value=0.00039  Score=34.08  Aligned_cols=24  Identities=46%  Similarity=0.880  Sum_probs=19.2

Q ss_pred             ccCCcccccCCCchhHHHHHHhcCC
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |+|+.|+.... ...|..|++.|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999999998 9999999998653

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.77  E-value=0.00041  Score=34.30  Aligned_cols=23  Identities=26%  Similarity=0.609  Sum_probs=20.9

Q ss_pred             ccCCcccccCCCchhHHHHHHhc
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~h   69 (181)
                      |.|.+|++.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999998754

>KOG2893|consensus

Probab=96.77  E-value=0.00036  Score=53.48  Aligned_cols=51  Identities=29%  Similarity=0.634  Sum_probs=42.2

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHH-HHhcCC
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRH-MTLHDP   71 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H-~~~h~~   71 (181)
                      .||| |.+|++-|.....|..|++             .|.|+|.+|-|.+.+--.|..| |++|..
T Consensus         9 ~kpw-cwycnrefddekiliqhqk-------------akhfkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQK-------------AKHFKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhh-------------hccceeeeehhhhccCCCceeehhhhhhh
Confidence            3566 9999999999999999965             4789999999988888888888 666643

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.71  E-value=0.00072  Score=53.91  Aligned_cols=55  Identities=22%  Similarity=0.370  Sum_probs=44.3

Q ss_pred             CCCcccCCc--ccccCCCchhHHHHHHh-c------------------CCCChhHHHHHHHhhhcccceeeecCcc
Q psy9958          43 KEKTHKCPE--CKKAFRHKGNLLRHMTL-H------------------DPDSELIEQQVALKLGRQKKVHIIDGHK   97 (181)
Q Consensus        43 ~~~~~~C~~--C~k~F~~~~~l~~H~~~-h------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (181)
                      ++|||+|++  |.|.|+....|+.|+.. |                  ...+||.|..|.++.+....++.|.++.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~Hs  421 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHS  421 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccccc
Confidence            359999998  99999999999999863 2                  1348899999999987777776666553

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.38  E-value=0.00093  Score=33.76  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=14.6

Q ss_pred             ccCCcccccCCCchhHHHHHHh
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4566777777777777666653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.18  E-value=0.00089  Score=33.83  Aligned_cols=22  Identities=36%  Similarity=0.887  Sum_probs=20.4

Q ss_pred             eecccchhhccChhhHHHHHHH
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.78  E-value=0.0018  Score=53.47  Aligned_cols=62  Identities=32%  Similarity=0.547  Sum_probs=55.7

Q ss_pred             CceecccchhhccChhhHHHHHH--HhcCCCCCCCCCCC--CcccCC--cccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVN--LYHNPHYVPPSPKE--KTHKCP--ECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~--~hh~~~~~~~~~~~--~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      .++.|..|...|.....|.+|.+  .|         .++  +++.|+  .|++.|.+...+..|..+|.......+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h---------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNH---------SGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCcccccccccccccccc---------ccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            57999999999999999999999  55         677  999999  7999999999999999999988776544

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.71  E-value=0.008  Score=29.79  Aligned_cols=21  Identities=29%  Similarity=0.719  Sum_probs=13.4

Q ss_pred             ccCCcccccCCCchhHHHHHHh
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      ..|+.||+.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3577777777 45666677553

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=95.11  E-value=0.0043  Score=36.80  Aligned_cols=39  Identities=18%  Similarity=0.431  Sum_probs=28.9

Q ss_pred             cccCCcccccCCCchhHHHHHHh-cCCC-ChhHHHHHHHhhh
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTL-HDPD-SELIEQQVALKLG   85 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~-h~~~-~~~~~~~~~~~~~   85 (181)
                      .|.|+.|++. .....|..|... |..+ +.+.|+.|...+.
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~   42 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT   42 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh
Confidence            5899999994 556889999765 5443 4578888886543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.09  E-value=0.014  Score=31.04  Aligned_cols=23  Identities=22%  Similarity=0.577  Sum_probs=15.6

Q ss_pred             ceecccchhhccChhhHHHHHHH
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      +|.|.+|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777777677776654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PRK04860 hypothetical protein; Provisional

Probab=94.99  E-value=0.0038  Score=45.64  Aligned_cols=38  Identities=16%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhc
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGR   86 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~   86 (181)
                      -+|.|. |++   ....+.+|.++|.+.++|.|..|...+..
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            468887 887   67778899999999999988888766543

>KOG1146|consensus

Probab=94.92  E-value=0.018  Score=53.83  Aligned_cols=66  Identities=21%  Similarity=0.319  Sum_probs=51.7

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcCCC------CCCCC----------CCCCcccCCcccccCCCchhHHHHH
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPH------YVPPS----------PKEKTHKCPECKKAFRHKGNLLRHM   66 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~------~~~~~----------~~~~~~~C~~C~k~F~~~~~l~~H~   66 (181)
                      +|+-.|-|+|+.|+..|+....|-.|||..|-..      +..++          .+.++|.|..|..+|..+.+|..|+
T Consensus       459 L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihl  538 (1406)
T KOG1146|consen  459 LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHL  538 (1406)
T ss_pred             eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHH
Confidence            3556688999999999999999999999854210      00000          2357899999999999999999998


Q ss_pred             Hh
Q psy9958          67 TL   68 (181)
Q Consensus        67 ~~   68 (181)
                      ..
T Consensus       539 qS  540 (1406)
T KOG1146|consen  539 QS  540 (1406)
T ss_pred             HH
Confidence            64

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.84  E-value=0.0075  Score=46.25  Aligned_cols=53  Identities=17%  Similarity=0.464  Sum_probs=34.1

Q ss_pred             CCceecccchhhccChhhHHHHHHHhc-CCCCCCCCCCCCc-----ccCCcccccCCCc
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYH-NPHYVPPSPKEKT-----HKCPECKKAFRHK   59 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh-~~~~~~~~~~~~~-----~~C~~C~k~F~~~   59 (181)
                      +|...|++|++.|..+..+....+.-. ...+.+.-.+..|     +.|+.||.+|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            467899999999999877766665421 1111111123333     4899999987755

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=94.78  E-value=0.015  Score=45.27  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=14.1

Q ss_pred             CCCCceecccchhhccChhhHHHHHHH
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      .|.|.|+|.+|.. |...-.--.|+..
T Consensus       138 hGGrif~CsfC~~-flCEDDQFEHQAs  163 (314)
T PF06524_consen  138 HGGRIFKCSFCDN-FLCEDDQFEHQAS  163 (314)
T ss_pred             CCCeEEEeecCCC-eeeccchhhhhhh
Confidence            4567788888763 3333333444443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.73  E-value=0.02  Score=28.31  Aligned_cols=21  Identities=24%  Similarity=0.632  Sum_probs=17.5

Q ss_pred             eecccchhhccChhhHHHHHHH
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      ..|+.||+.| ....|.+|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 56779999764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.72  E-value=0.019  Score=30.45  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             CcccCCcccccCCCchhHHHHHHh
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      .+|.|.+|++.|.....+..|++.
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHCh
Confidence            368899999999999999999764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.31  E-value=0.028  Score=33.26  Aligned_cols=29  Identities=31%  Similarity=0.527  Sum_probs=16.9

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhc
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .|+..+.|+.|+..|.......+|....|
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            34555666666666666666666655444

>KOG2186|consensus

Probab=94.03  E-value=0.034  Score=43.12  Aligned_cols=50  Identities=16%  Similarity=0.472  Sum_probs=40.4

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      .|.|.+||...+.. .|-+|+...+          ...|.|.-|++.|-+ ..+..|.+--+
T Consensus         3 ~FtCnvCgEsvKKp-~vekH~srCr----------n~~fSCIDC~k~F~~-~sYknH~kCIT   52 (276)
T KOG2186|consen    3 FFTCNVCGESVKKP-QVEKHMSRCR----------NAYFSCIDCGKTFER-VSYKNHTKCIT   52 (276)
T ss_pred             EEehhhhhhhcccc-chHHHHHhcc----------CCeeEEeeccccccc-chhhhhhhhcc
Confidence            48999999998865 5788988874          378999999999998 66788875433

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=93.95  E-value=0.031  Score=43.60  Aligned_cols=29  Identities=24%  Similarity=0.409  Sum_probs=23.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      .+.+++.|+.||.-......|..-.|+|.
T Consensus       205 ~k~k~~PCPKCg~et~eTkdLSmStR~hk  233 (314)
T PF06524_consen  205 EKGKPIPCPKCGYETQETKDLSMSTRSHK  233 (314)
T ss_pred             ccCCCCCCCCCCCcccccccceeeeecch
Confidence            34689999999998888888887777663

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=93.76  E-value=0.048  Score=35.84  Aligned_cols=25  Identities=32%  Similarity=0.804  Sum_probs=22.1

Q ss_pred             ceecccchhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .|.|.+|++.|.+...|..|++.++
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            6999999999999999999999763

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=92.75  E-value=0.074  Score=28.12  Aligned_cols=24  Identities=29%  Similarity=0.843  Sum_probs=17.5

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      |+|.+||..+...                     ..++.|+.||.
T Consensus         2 ~~C~~CGy~y~~~---------------------~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGE---------------------EAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCC---------------------cCCCcCcCCCC
Confidence            7888898655432                     26789999985

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=92.21  E-value=0.087  Score=35.93  Aligned_cols=30  Identities=23%  Similarity=0.653  Sum_probs=23.1

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCc
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHK   59 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~   59 (181)
                      ..|+.||++|.-.                    +..|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDL--------------------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL--------------------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC--------------------CCCCccCCCCCCccCcc
Confidence            4799999988752                    23677899999988865

The function of members of this family is unknown.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.18  E-value=0.046  Score=32.36  Aligned_cols=30  Identities=27%  Similarity=0.643  Sum_probs=25.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      .|+.-+.|+.|++.|.....+.+|....|+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            578889999999999999999999765444

>PF15269 zf-C2H2_7: Zinc-finger

Probab=92.13  E-value=0.17  Score=28.62  Aligned_cols=34  Identities=35%  Similarity=0.729  Sum_probs=26.1

Q ss_pred             CCCCCCCCC-CCcccCCcccccCCCchhHHHHHHh
Q psy9958          35 PHYVPPSPK-EKTHKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        35 ~~~~~~~~~-~~~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      ++|++.+.| .-.|+|-.|..+...++.|-.||+-
T Consensus         8 phyiprp~gkp~~ykcfqcpftc~~kshl~nhmky   42 (54)
T PF15269_consen    8 PHYIPRPPGKPFKYKCFQCPFTCNEKSHLFNHMKY   42 (54)
T ss_pred             CCcCCCCCCCCccceeecCCcccchHHHHHHHHHH
Confidence            356654444 3468899999999999999999974

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.01  E-value=0.34  Score=32.86  Aligned_cols=63  Identities=17%  Similarity=0.374  Sum_probs=44.3

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCC------------------------CCCCCCC---------CCcccC----C
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPH------------------------YVPPSPK---------EKTHKC----P   50 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~------------------------~~~~~~~---------~~~~~C----~   50 (181)
                      +-..|..|.....- +.+..|++..|...                        ...+...         -.-|.|    .
T Consensus        10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~   88 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP   88 (109)
T ss_pred             CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence            55779999988776 77899988544221                        0011111         123789    9


Q ss_pred             cccccCCCchhHHHHHHhcCC
Q psy9958          51 ECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        51 ~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      .|+..+.+...+..|++.+|+
T Consensus        89 ~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   89 HCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCcEeccHHHHHHHHHHhcC
Confidence            999999999999999988764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PRK04860 hypothetical protein; Provisional

Probab=91.06  E-value=0.12  Score=37.81  Aligned_cols=31  Identities=23%  Similarity=0.521  Sum_probs=25.7

Q ss_pred             ChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCch
Q psy9958          21 QKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG   60 (181)
Q Consensus        21 ~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~   60 (181)
                      ....+++|.++|         ++.++|.|..|++.|....
T Consensus       127 ~~~~~rrH~ri~---------~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        127 HQLTVRRHNRVV---------RGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             eeCHHHHHHHHh---------cCCccEECCCCCceeEEec
Confidence            346789999998         6889999999999987654

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=90.41  E-value=0.19  Score=26.79  Aligned_cols=25  Identities=28%  Similarity=0.747  Sum_probs=17.7

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      .|+|.+||..+...                     ..|..|+.||.
T Consensus         2 ~~~C~~CG~i~~g~---------------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE---------------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC---------------------cCCCcCcCCCC
Confidence            58899998655421                     25678999986

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG4124|consensus

Probab=89.43  E-value=0.099  Score=42.52  Aligned_cols=61  Identities=28%  Similarity=0.537  Sum_probs=44.7

Q ss_pred             CCceeccc--chhhccChhhHHHHHHHhcCCCCC------CCCCC----CCcccCCcccccCCCchhHHHHHH
Q psy9958           7 QNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYV------PPSPK----EKTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus         7 ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~------~~~~~----~~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      .+||+|.+  |.+.++....|+.|...-|...+-      .+|++    .|+|.|++|.++++.-..|..|..
T Consensus       347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~  419 (442)
T KOG4124|consen  347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRT  419 (442)
T ss_pred             cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceee
Confidence            57899987  999999999999887655543221      33433    588999999988887777666543

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=89.05  E-value=0.23  Score=38.00  Aligned_cols=29  Identities=24%  Similarity=0.598  Sum_probs=16.3

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      ..|.|++|+|.|.-.....+|+...|.++
T Consensus        76 ~K~~C~lc~KlFkg~eFV~KHI~nKH~e~  104 (214)
T PF04959_consen   76 DKWRCPLCGKLFKGPEFVRKHIFNKHPEK  104 (214)
T ss_dssp             EEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred             CEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence            45666666666666666666666555543

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=88.98  E-value=0.26  Score=34.38  Aligned_cols=35  Identities=14%  Similarity=0.280  Sum_probs=25.7

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHH
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL   63 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~   63 (181)
                      ...|+.||++|.-.                    +..|..|+.||..|.-...++
T Consensus         9 Kr~Cp~cg~kFYDL--------------------nk~p~vcP~cg~~~~~~~~~~   43 (129)
T TIGR02300         9 KRICPNTGSKFYDL--------------------NRRPAVSPYTGEQFPPEEALK   43 (129)
T ss_pred             cccCCCcCcccccc--------------------CCCCccCCCcCCccCcchhhc
Confidence            35799999998742                    236889999999987664443

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>KOG2071|consensus

Probab=88.92  E-value=0.27  Score=42.70  Aligned_cols=27  Identities=19%  Similarity=0.569  Sum_probs=23.5

Q ss_pred             CCceecccchhhccChhhHHHHHHHhc
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .+|-.|..||.+|........||..|-
T Consensus       416 ~~pnqC~~CG~R~~~~ee~sk~md~H~  442 (579)
T KOG2071|consen  416 DSPNQCKSCGLRFDDSEERSKHMDIHD  442 (579)
T ss_pred             CCcchhcccccccccchhhhhHhhhhh
Confidence            567899999999999999888888764

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.83  E-value=0.33  Score=27.22  Aligned_cols=24  Identities=25%  Similarity=0.557  Sum_probs=11.3

Q ss_pred             CCceecccchhhccCh----hhHHHHHH
Q psy9958           7 QNPYLCDHCDQTFRQK----QLLKRHVN   30 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~----~~L~~H~~   30 (181)
                      .....|.+|++.++..    ++|.+|++
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            3445666666666553    55666653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG2785|consensus

Probab=88.80  E-value=0.24  Score=40.81  Aligned_cols=61  Identities=18%  Similarity=0.380  Sum_probs=45.6

Q ss_pred             ceecccchhhccChhhHHHHHHHh-cCCCCC--------------------------CC-CCCCCcccCCcccccCCCch
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLY-HNPHYV--------------------------PP-SPKEKTHKCPECKKAFRHKG   60 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~h-h~~~~~--------------------------~~-~~~~~~~~C~~C~k~F~~~~   60 (181)
                      -|.|.-|...|......+.|+++- |.++..                          .+ ..+..++.|..|.|.|....
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~   82 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK   82 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence            489999999999998888898752 211100                          11 23456889999999999999


Q ss_pred             hHHHHHHhc
Q psy9958          61 NLLRHMTLH   69 (181)
Q Consensus        61 ~l~~H~~~h   69 (181)
                      ....|++..
T Consensus        83 a~~~hl~Sk   91 (390)
T KOG2785|consen   83 AHENHLKSK   91 (390)
T ss_pred             hHHHHHHHh
Confidence            999998653

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=87.64  E-value=0.26  Score=26.71  Aligned_cols=34  Identities=18%  Similarity=0.489  Sum_probs=24.1

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCC
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFR   57 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~   57 (181)
                      +.|+.|+..|.-......              .......|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~~--------------~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLG--------------ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcC--------------CCCCEEECCCCCCEEE
Confidence            679999999887654321              1223678999998875

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>KOG4173|consensus

Probab=87.62  E-value=0.44  Score=36.06  Aligned_cols=68  Identities=21%  Similarity=0.331  Sum_probs=47.9

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcC----------CCChh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD----------PDSEL   75 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~----------~~~~~   75 (181)
                      +.|.|++  |-..|........|..+-|+            -.|..|.+.|.+..-|..|+.-.|          |.-.|
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~------------~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy  145 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHG------------NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMY  145 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhccc------------chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHH
Confidence            4578887  88888888877777655432            269999999999999999875432          44456


Q ss_pred             HH--HHHHHhhhcc
Q psy9958          76 IE--QQVALKLGRQ   87 (181)
Q Consensus        76 ~~--~~~~~~~~~~   87 (181)
                      .|  ..|..+|...
T Consensus       146 ~ClvEgCt~KFkT~  159 (253)
T KOG4173|consen  146 QCLVEGCTEKFKTS  159 (253)
T ss_pred             HHHHHhhhhhhhhh
Confidence            65  3566666443

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=87.38  E-value=0.079  Score=38.49  Aligned_cols=19  Identities=21%  Similarity=0.496  Sum_probs=14.7

Q ss_pred             CcccCCcccccCCCchhHH
Q psy9958          45 KTHKCPECKKAFRHKGNLL   63 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~   63 (181)
                      +.+.|+.||++|.+--.+.
T Consensus        27 ~~~~c~~c~~~f~~~e~~~   45 (154)
T PRK00464         27 RRRECLACGKRFTTFERVE   45 (154)
T ss_pred             eeeeccccCCcceEeEecc
Confidence            3489999999998765543

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=87.30  E-value=0.34  Score=34.23  Aligned_cols=22  Identities=36%  Similarity=0.845  Sum_probs=13.4

Q ss_pred             eecccchhhccChhhHHHHHHHhcC
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHN   34 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~   34 (181)
                      -.|-.|||.|+.   |++|++.||+
T Consensus        73 i~clecGk~~k~---LkrHL~~~~g   94 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHHG   94 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT-
T ss_pred             eEEccCCcccch---HHHHHHHccC
Confidence            468888888874   5888888764

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>KOG4173|consensus

Probab=86.59  E-value=0.094  Score=39.59  Aligned_cols=58  Identities=21%  Similarity=0.484  Sum_probs=45.1

Q ss_pred             ecccchhhccChhhHHHHHHHhcCCCCC-CCCCCCCcccCCc--ccccCCCchhHHHHHHh
Q psy9958          11 LCDHCDQTFRQKQLLKRHVNLYHNPHYV-PPSPKEKTHKCPE--CKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        11 ~C~~C~k~f~~~~~L~~H~~~hh~~~~~-~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~   68 (181)
                      .|.+|.+.|.+...|..|+.-.|..-+- .+..|.--|.|-+  |+-.|.+....+.|+-.
T Consensus       108 sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  108 SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence            7999999999999999999876642111 2224566799966  99999999999999644

>KOG2785|consensus

Probab=86.24  E-value=0.49  Score=39.01  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=47.9

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCC-----CCCCCCCC---------CCcccCCccc---ccCCCchhHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNP-----HYVPPSPK---------EKTHKCPECK---KAFRHKGNLLRHMTLH   69 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~-----~~~~~~~~---------~~~~~C~~C~---k~F~~~~~l~~H~~~h   69 (181)
                      -|--|-+|++.|+....-..||..+|+.     .|+.-..|         ..-|.|-.|+   +.|.+-...+.||.-.
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            4567999999999999999999999864     22211111         3457899999   9999999999999753

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=85.87  E-value=0.45  Score=33.65  Aligned_cols=27  Identities=33%  Similarity=0.520  Sum_probs=17.7

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      ...|-.|||.|..   |++|++.|+|-.+-
T Consensus        72 ~i~clecGk~~k~---LkrHL~~~~gltp~   98 (132)
T PF05443_consen   72 YIICLECGKKFKT---LKRHLRTHHGLTPE   98 (132)
T ss_dssp             -EE-TBT--EESB---HHHHHHHTT-S-HH
T ss_pred             eeEEccCCcccch---HHHHHHHccCCCHH
Confidence            4579999999986   69999999887653

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=85.75  E-value=0.41  Score=25.79  Aligned_cols=34  Identities=21%  Similarity=0.598  Sum_probs=24.6

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCC
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFR   57 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~   57 (181)
                      ..|+.|+..|.-......              .+....+|+.|+..|.
T Consensus         3 i~Cp~C~~~y~i~d~~ip--------------~~g~~v~C~~C~~~f~   36 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKIP--------------PKGRKVRCSKCGHVFF   36 (36)
T ss_pred             EECCCCCCEEeCCHHHCC--------------CCCcEEECCCCCCEeC
Confidence            479999998887654321              3456789999998874

>smart00614 ZnF_BED BED zinc finger

Probab=85.62  E-value=0.6  Score=26.97  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=13.6

Q ss_pred             cccCCcccccCCCc-----hhHHHHHH
Q psy9958          46 THKCPECKKAFRHK-----GNLLRHMT   67 (181)
Q Consensus        46 ~~~C~~C~k~F~~~-----~~l~~H~~   67 (181)
                      .-.|..|++.+...     ++|.+|++
T Consensus        18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       18 RAKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            34567777666554     46777766

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=85.41  E-value=0.59  Score=28.10  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      .|.|+.||+.-..+-.--   |.           -..+|.|+.||.
T Consensus        27 ~F~CPnCGe~~I~Rc~~C---Rk-----------~g~~Y~Cp~CGF   58 (61)
T COG2888          27 KFPCPNCGEVEIYRCAKC---RK-----------LGNPYRCPKCGF   58 (61)
T ss_pred             EeeCCCCCceeeehhhhH---HH-----------cCCceECCCcCc
Confidence            488999996655433211   11           147899999985

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.28  E-value=0.59  Score=33.59  Aligned_cols=38  Identities=21%  Similarity=0.537  Sum_probs=22.2

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCC
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFR   57 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~   57 (181)
                      ..-|.|+.|++.|.....+..   ..         . ...|.|+.||....
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~---~d---------~-~~~f~Cp~Cg~~l~  134 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQL---LD---------M-DGTFTCPRCGEELE  134 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHh---cC---------C-CCcEECCCCCCEEE
Confidence            445888888888775433221   01         1 23488888887543

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=85.27  E-value=0.58  Score=28.13  Aligned_cols=31  Identities=19%  Similarity=0.627  Sum_probs=18.2

Q ss_pred             ceecccchhh-ccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958           9 PYLCDHCDQT-FRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus         9 p~~C~~C~k~-f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      .|.|+.||+. ..+-..-+    .           -..+|.|+.||+
T Consensus        25 ~F~CPnCG~~~I~RC~~CR----k-----------~~~~Y~CP~CGF   56 (59)
T PRK14890         25 KFLCPNCGEVIIYRCEKCR----K-----------QSNPYTCPKCGF   56 (59)
T ss_pred             EeeCCCCCCeeEeechhHH----h-----------cCCceECCCCCC
Confidence            4788888876 33222111    1           136888888875

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=85.09  E-value=0.21  Score=38.29  Aligned_cols=29  Identities=21%  Similarity=0.619  Sum_probs=23.3

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhc
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .++..|.|..|+|.|+-...+++|+...|
T Consensus        73 ~~~~K~~C~lc~KlFkg~eFV~KHI~nKH  101 (214)
T PF04959_consen   73 EDEDKWRCPLCGKLFKGPEFVRKHIFNKH  101 (214)
T ss_dssp             SSSEEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred             HcCCEECCCCCCcccCChHHHHHHHhhcC
Confidence            35667999999999999999999999876

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>KOG2231|consensus

Probab=84.76  E-value=0.69  Score=41.12  Aligned_cols=21  Identities=29%  Similarity=0.692  Sum_probs=11.7

Q ss_pred             cCCcccccCCCchhHHHHHHh
Q psy9958          48 KCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        48 ~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      .|..|...|.....|.+|++.
T Consensus       184 ~C~~C~~~fld~~el~rH~~~  204 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRF  204 (669)
T ss_pred             cchhhhhhhccHHHHHHhhcc
Confidence            455555555555555555553

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=84.44  E-value=0.41  Score=31.10  Aligned_cols=35  Identities=20%  Similarity=0.466  Sum_probs=24.6

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGN   61 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~   61 (181)
                      .+|.|+.|++.        .+.|.           +..-|.|..||..|.-...
T Consensus        34 ~~~~Cp~C~~~--------~VkR~-----------a~GIW~C~kCg~~fAGgay   68 (89)
T COG1997          34 AKHVCPFCGRT--------TVKRI-----------ATGIWKCRKCGAKFAGGAY   68 (89)
T ss_pred             cCCcCCCCCCc--------ceeee-----------ccCeEEcCCCCCeeccccc
Confidence            46889999854        22232           3567899999999986554

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=84.25  E-value=0.51  Score=32.17  Aligned_cols=31  Identities=16%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcc
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQ   87 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~   87 (181)
                      ...|+.||++|--   |        +..|..|+.|+..+...
T Consensus         9 KR~Cp~CG~kFYD---L--------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    9 KRTCPSCGAKFYD---L--------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cccCCCCcchhcc---C--------CCCCccCCCCCCccCcc
Confidence            4579999999864   2        22566788888776554

The function of members of this family is unknown.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=84.13  E-value=0.52  Score=25.53  Aligned_cols=34  Identities=26%  Similarity=0.673  Sum_probs=24.4

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCC
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFR   57 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~   57 (181)
                      ..|+.|+..|.-......              .+.+..+|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~l~--------------~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKLP--------------AGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHHcc--------------cCCcEEECCCCCcEee
Confidence            469999999986653211              2456889999998875

>PHA00626 hypothetical protein

Probab=84.01  E-value=0.29  Score=29.00  Aligned_cols=16  Identities=13%  Similarity=0.258  Sum_probs=12.9

Q ss_pred             CCcccCCcccccCCCc
Q psy9958          44 EKTHKCPECKKAFRHK   59 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~   59 (181)
                      ...|.|+.||..|+..
T Consensus        21 snrYkCkdCGY~ft~~   36 (59)
T PHA00626         21 SDDYVCCDCGYNDSKD   36 (59)
T ss_pred             CcceEcCCCCCeechh
Confidence            3689999999988753

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=83.55  E-value=0.69  Score=37.99  Aligned_cols=60  Identities=28%  Similarity=0.572  Sum_probs=51.2

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcCCCChh
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      .+++.|..|...|....++.+|.+.+         .+++++.|..  |.+.|.....+.+|.+.++.....
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (467)
T COG5048          31 PRPDSCPNCTDSFSRLEHLTRHIRSH---------TGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSD   92 (467)
T ss_pred             Cchhhcccccccccccchhhhhcccc---------cccCCccccccccccccCCcchhhhhcccccccccc
Confidence            46788999999999999999999998         7899999977  668899999999998887665443

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=82.36  E-value=0.76  Score=26.04  Aligned_cols=31  Identities=19%  Similarity=0.544  Sum_probs=21.4

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCC
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFR   57 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~   57 (181)
                      ..|+|+.||..|....                   ....+.|+.||..+.
T Consensus         2 ~~y~C~~CG~~~~~~~-------------------~~~~~~Cp~CG~~~~   32 (46)
T PRK00398          2 AEYKCARCGREVELDE-------------------YGTGVRCPYCGYRIL   32 (46)
T ss_pred             CEEECCCCCCEEEECC-------------------CCCceECCCCCCeEE
Confidence            3689999998776422                   112678999997554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
1x6h_A	86	Solution Structures Of The C2h2 Type Zinc Finger Do		5e-11
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		4e-06
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-05
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-04
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-04
4gzn_C	60	Mouse Zfp57 Zinc Fingers In Complex With Methylated		4e-04

>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Transcriptional Repressor Ctcf Length = 86

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           H  + PY C HCD+TFRQKQLL  H   YH+P++VP +       C +C K F  +  +
Sbjct: 9  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-----FVCSKCGKTFTRRNTM 63
Query: 63 LRH 65
           RH
Sbjct: 64 ARH 66

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 1  MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
          +LIH D  PY C +C + F QK  +K+H  ++           EK HKC  C KAF    
Sbjct: 21 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH---------TGEKPHKCQVCGKAFSQSS 71
Query: 61 NLLRHMTLH 69
          NL+ H   H
Sbjct: 72 NLITHSRKH 80

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + PY C  C ++F  K+ L RH   +           EK +KCPEC K+F  + NL
Sbjct: 43  THTGEKPYKCPECGKSFSDKKDLTRHQRTHTG---------EKPYKCPECGKSFSQRANL 93
Query: 63  LRHMTLH 69
             H   H
Sbjct: 94  RAHQRTH 100

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           H D+ PY CD C + FR++  L+ H  ++          KEK  KC EC K F     L
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDHRYIH---------SKEKPFKCQECGKGFCQSRTL 89
Query: 63 LRHMTLH 69
            H TLH
Sbjct: 90 AVHKTLH 96

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           H  + PY C  C ++F Q   L++H   +           EK +KCPEC K+F    +L
Sbjct: 26 THTGEKPYKCPECGKSFSQSSDLQKHQRTHTG---------EKPYKCPECGKSFSRSDHL 76
Query: 63 LRHMTLH 69
           RH   H
Sbjct: 77 SRHQRTH 83

>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna Length = 60

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 7  QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
          + P+ C+ C +T+R    L RH   +    Y P S       CPEC K FR +  + RH+
Sbjct: 2  ERPFFCNFCGKTYRDASGLSRHRRAHLG--YRPRS-------CPECGKCFRDQSEVNRHL 52
Query: 67 TLH 69
           +H
Sbjct: 53 KVH 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-12
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	4e-09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-07
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-05
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-07
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	9e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-06
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	1e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-06
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	6e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	8e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	8e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	1e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	1e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	1e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	3e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	4e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	5e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	6e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	6e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	8e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	8e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-04

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 61.8 bits (151), Expect = 2e-13
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           H  + PY C HCD+TFRQKQLL  H   YH+P++VP         C +C K F  +  +
Sbjct: 9  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP-----AAFVCSKCGKTFTRRNTM 63

Query: 63 LRHMTLH 69
           RH    
Sbjct: 64 ARHADNC 70

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 59.3 bits (144), Expect = 1e-12
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
             C+ C  T RQK  L  H    H       +       C  C K F    ++  H + 
Sbjct: 7  GLQCEICGFTCRQKASLNWHQRK-HAE-----TVAALRFPCEFCGKRFEKPDSVAAHRSK 60

Query: 69 HDPDSELIEQQ 79
            P   L  Q+
Sbjct: 61 SHPALLLAPQE 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 7/26 (26%), Positives = 9/26 (34%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
              +C  C    R K +L  H   H
Sbjct: 5  SSGLQCEICGFTCRQKASLNWHQRKH 30

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 3/48 (6%)

Query: 1  MLIHIDQN---PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEK 45
             H +      + C+ C + F +   +  H +  H    + P     
Sbjct: 27 QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 57.9 bits (141), Expect = 3e-12
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 7/67 (10%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
              ++ Y C  C + +       RH    H           K + CP C K F  K N+
Sbjct: 4  TKEGEHTYRCKVCSRVYTHISNFCRHYVTSH-------KRNVKVYPCPFCFKEFTRKDNM 56

Query: 63 LRHMTLH 69
            H+ + 
Sbjct: 57 TAHVKII 63

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 56.0 bits (136), Expect = 2e-11
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 1  MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
             H  + PY C  C   F Q   +K H+   H       +       CP C      K 
Sbjct: 7  GRTHSGEKPYECYICHARFTQSGTMKMHILQKH-------TENVAKFHCPHCDTVIARKS 59

Query: 61 NLLRHM-TLH 69
          +L  H+   H
Sbjct: 60 DLGVHLRKQH 69

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
          I   Q       CD+TF     L  HV + H       +      +CP   K+F+ K  L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 63 LRHMTLH 69
          + H+ +H
Sbjct: 79 VNHIRVH 85

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 52.5 bits (127), Expect = 4e-10
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 4  HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
              +P  C  C  +   K  L+ H  + H          ++  KC  C    +   NL 
Sbjct: 4  GSSGHPEKCSECSYSCSSKAALRIHERI-HC--------TDRPFKCNYCSFDTKQPSNLS 54

Query: 64 RHMTLH 69
          +HM   
Sbjct: 55 KHMKKF 60

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC-----KKAFRHKGNLL 63
              D C Q F  ++ L  H+N  H  H      + K   C         + F+ +  L+
Sbjct: 3  DCRWDGCSQEFDSQEQLVHHINSEHI-H-----GERKEFVCHWGGCSRELRPFKAQYMLV 56

Query: 64 RHMTLH 69
           HM  H
Sbjct: 57 VHMRRH 62

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 1   MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAF 56
           +  H  + PY+C+H  C + F       +H N  H+         EK + C  P C K +
Sbjct: 89  LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS--------NEKPYVCKLPGCTKRY 140

Query: 57  RHKGNLLRHMTLH 69
               +L +H+   
Sbjct: 141 TDPSSLRKHVKTV 153

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 50.5 bits (122), Expect = 3e-09
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
          IH D  PY C +C + F QK  +K+H       H       EK HKC  C KAF    NL
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKH----TFIH-----TGEKPHKCQVCGKAFSQSSNL 73

Query: 63 LRHMTLH 69
          + H   H
Sbjct: 74 ITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
          + C  C ++F++   L  H  L H+          + + C  C K F  K ++ +H  +H
Sbjct: 2  FDCKICGKSFKRSSTLSTH-LLIHS--------DTRPYPCQYCGKRFHQKSDMKKHTFIH 52

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRH--VNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           H  + P+ C  C + + +K+ L  H   N  +          E+   C  C++ FR + 
Sbjct: 29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR--------SEQVFTCSVCQETFRRRM 80

Query: 61 NLLRHMTLH 69
           L  HM  H
Sbjct: 81 ELRLHMVSH 89

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           ++  +  + C  C +TFR++  L+ H       H       E  +KC  C + F  K +L
Sbjct: 60  MNRSEQVFTCSVCQETFRRRMELRLH----MVSH-----TGEMPYKCSSCSQQFMQKKDL 110

Query: 63  LRHMT 67
             HM 
Sbjct: 111 QSHMI 115

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
             C  C + F  K  LK H    +  H       EK  +CP+C K +  K NLL H 
Sbjct: 7  GVECPTCHKKFLSKYYLKVH----NRKH-----TGEKPFECPKCGKCYFRKENLLEHE 55

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
              +CP C K F  K  L  H   H
Sbjct: 5  SSGVECPTCHKKFLSKYYLKVHNRKH 30

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 49.4 bits (119), Expect = 4e-09
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
           ++C+ C + F +++ LKRH    +  H       EK + C  C +AF  +  L+RH 
Sbjct: 2  SFVCEVCTRAFARQEHLKRH----YRSH-----TNEKPYPCGLCNRAFTRRDLLIRHA 50

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 49.5 bits (119), Expect = 6e-09
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 9  PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLR 64
             CD   C + F  +Q L  H    H          +K+  CPE  C K+F  K +L  
Sbjct: 7  GMPCDFPGCGRIFSNRQYLNHHKKYQHI--------HQKSFSCPEPACGKSFNFKKHLKE 58

Query: 65 HMTLH 69
          HM LH
Sbjct: 59 HMKLH 63

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 49.4 bits (119), Expect = 7e-09
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
          +     PY CD C  +FR K  L  H       H       EK ++C  C   F    NL
Sbjct: 11 MTHSDKPYKCDRCQASFRYKGNLASH----KTVH-----TGEKPYRCNICGAQFNRPANL 61

Query: 63 LRHMTLH 69
            H  +H
Sbjct: 62 KTHTRIH 68

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 49.7 bits (120), Expect = 1e-08
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           H D+ PY CD C + FR++  L+ H       H      KEK  KC EC K F     L
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDH----RYIH-----SKEKPFKCQECGKGFCQSRTL 89

Query: 63 LRHMTLH 69
            H TLH
Sbjct: 90 AVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
              +  ++C  C + F +   L  H       H       E+ + C  C KAFR + +L
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIH----ERTH-----TDERPYTCDICHKAFRRQDHL 61

Query: 63 LRHMTLH 69
            H  +H
Sbjct: 62 RDHRYIH 68

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 1  MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
          + IH  Q P+ C  C + F +   L  H+   H          EK   C  C + F    
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT--------GEKPFACDICGRKFARSD 76

Query: 61 NLLRHMTLH 69
             RH  +H
Sbjct: 77 ERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 9  PYLC--DHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
          PY C  + CD+ F Q   L RH+ + H          +K  +C  C + F    +L  H+
Sbjct: 4  PYACPVESCDRRFSQSGSLTRHIRI-HT--------GQKPFQCRICMRNFSRSDHLTTHI 54

Query: 67 TLH 69
            H
Sbjct: 55 RTH 57

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 21/67 (31%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH------KCPECKKAFRHKGNL 62
          P+ C  C + F +   L  H                +TH       C  C + F      
Sbjct: 3  PFQCRICMRNFSRSDHLTTH---------------IRTHTGEKPFACDICGRKFARSDER 47

Query: 63 LRHMTLH 69
           RH  + 
Sbjct: 48 KRHRDIQ 54

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 1  MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
          +  H  + P+ CD C + F +    KRH ++  +                + ++      
Sbjct: 23 IRTHTGEKPFACDICGRKFARSDERKRHRDI-QH---------ILPILEDKVEELLSKNY 72

Query: 61 NLLRHMT 67
          +L   + 
Sbjct: 73 HLENEVA 79

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 48.6 bits (117), Expect = 2e-08
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
          P+ C+ C + F +K  LK H       H        K +KC  C  A     +L +H+ +
Sbjct: 8  PHKCEVCGKCFSRKDKLKTH----MRCH-----TGVKPYKCKTCDYAAADSSSLNKHLRI 58

Query: 69 H 69
          H
Sbjct: 59 H 59

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 48.2 bits (116), Expect = 3e-08
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           H    PY C  CD        L +H+ + H+         E+  KC  C  A R+   L
Sbjct: 30 CHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS--------DERPFKCQICPYASRNSSQL 80

Query: 63 LRHMTLH 69
            H+  H
Sbjct: 81 TVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.9 bits (92), Expect = 7e-05
 Identities = 11/26 (42%), Positives = 11/26 (42%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
             HKC  C K F  K  L  HM  H
Sbjct: 6  SGPHKCEVCGKCFSRKDKLKTHMRCH 31

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 47.9 bits (115), Expect = 6e-08
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 9  PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
             C H  C + FR    +++H++  H           + H C EC KAF     L RH 
Sbjct: 5  TIACPHKGCTKMFRDNSAMRKHLHT-HG---------PRVHVCAECGKAFVESSKLKRHQ 54

Query: 67 TLH 69
           +H
Sbjct: 55 LVH 57

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 13/73 (17%)

Query: 1   MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP--ECKKAF 56
            L+H  + P+ C    C + F     L+ HV + H          ++ + CP   C K F
Sbjct: 54  QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HT--------GDRPYVCPFDGCNKKF 104

Query: 57  RHKGNLLRHMTLH 69
               NL  H+  H
Sbjct: 105 AQSTNLKSHILTH 117

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
             C+ C + FR    L RH    H+         EK + CP C   F+ K  +  H+  
Sbjct: 7  GVACEICGKIFRDVYHLNRHKLS-HS--------GEKPYSCPVCGLRFKRKDRMSYHVRS 57

Query: 69 H 69
          H
Sbjct: 58 H 58

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 23/74 (31%)

Query: 1  MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH--------KCPEC 52
           L H  + PY C  C   F++K  +  H                ++H         C  C
Sbjct: 27 KLSHSGEKPYSCPVCGLRFKRKDRMSYH---------------VRSHDGSVGKPYICQSC 71

Query: 53 KKAFRHKGNLLRHM 66
           K F    +L  H+
Sbjct: 72 GKGFSRPDHLNGHI 85

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
               C  C K FR   +L RH   H
Sbjct: 5  SSGVACEICGKIFRDVYHLNRHKLSH 30

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 49.0 bits (118), Expect = 8e-08
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
          +   + PY C  C ++F +   L  H       H       EK +KCPEC K+F  K +L
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEH----QRTH-----TGEKPYKCPECGKSFSDKKDL 65

Query: 63 LRHMTLH 69
           RH   H
Sbjct: 66 TRHQRTH 72

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + PY C  C ++F  K+ L RH       H       EK +KCPEC K+F  + NL
Sbjct: 43  THTGEKPYKCPECGKSFSDKKDLTRH----QRTH-----TGEKPYKCPECGKSFSQRANL 93

Query: 63  LRHMTLH 69
             H   H
Sbjct: 94  RAHQRTH 100

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + PY C  C ++F Q   L+ H       H       EK +KCPEC K+F  + NL
Sbjct: 99  THTGEKPYACPECGKSFSQLAHLRAH----QRTH-----TGEKPYKCPECGKSFSREDNL 149

Query: 63  LRHMTLH 69
             H   H
Sbjct: 150 HTHQRTH 156

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
            H  + PY C  C ++F ++  L  H       H       EK +KCPEC K+F  +  L
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTH----QRTH-----TGEKPYKCPECGKSFSRRDAL 177

Query: 63  LRHMTLH 69
             H   H
Sbjct: 178 NVHQRTH 184

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 46.3 bits (111), Expect = 8e-08
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
          IH  + PY C  C + F +  +L +H       H       EK +KC EC KAF     L
Sbjct: 8  IHSGEKPYGCVECGKAFSRSSILVQH----QRVH-----TGEKPYKCLECGKAFSQNSGL 58

Query: 63 LRHMTLH 69
          + H  +H
Sbjct: 59 INHQRIH 65

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAFRH 58
              H    P+ C  C + F +   LK H    H          EK   C  P C+K F  
Sbjct: 58  QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HT--------GEKPFSCRWPSCQKKFAR 108

Query: 59  KGNLLRHMTLH 69
              L+RH  +H
Sbjct: 109 SDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 1  MLIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRH 58
             H  + PY CD   C++ F +   LKRH    H           K  +C  C++ F  
Sbjct: 28 SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HT--------GVKPFQCKTCQRKFSR 78

Query: 59 KGNLLRHMTLH 69
            +L  H   H
Sbjct: 79 SDHLKTHTRTH 89

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 25/71 (35%)

Query: 9  PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH------KC--PECKKAFRH 58
          P++C +  C++ + +   L+ H                + H      +C   +C++ F  
Sbjct: 6  PFMCAYPGCNKRYFKLSHLQMH---------------SRKHTGEKPYQCDFKDCERRFSR 50

Query: 59 KGNLLRHMTLH 69
             L RH   H
Sbjct: 51 SDQLKRHQRRH 61

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC-----PECKKAFR 57
          I   Q       CD+TF     L  HV + H        P++  H C     P   K+F+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG-----PEQNNHVCYWEECPREGKSFK 73

Query: 58 HKGNLLRHMTLH 69
           K  L+ H+ +H
Sbjct: 74 AKYKLVNHIRVH 85

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 8/54 (14%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAF 56
                PY+C  C + F +   L  H+   H          E+ HKC       
Sbjct: 6  SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT--------SERPHKCQVWVSGP 51

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 7e-07
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
             ++  Y CD C ++F     L +H       H       EK +KC EC KAF  + +L
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKH----RRTH-----TGEKPYKCDECGKAFIQRSHL 62

Query: 63 LRHMTLH 69
          + H  +H
Sbjct: 63 IGHHRVH 69

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 44.7 bits (107), Expect = 9e-07
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
          +H+   PY C  C + F+ K  L  H+ + H           K ++C  C K F  + + 
Sbjct: 31 MHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HT--------GIKPYECNICAKRFMWRDSF 81

Query: 63 LRHM 66
           RH+
Sbjct: 82 HRHV 85

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
                 Y C  C ++F  K    RH+++ H           + + C  C K F+ K +L
Sbjct: 4  GSSGDKLYPC-QCGKSFTHKSQRDRHMSM-HL--------GLRPYGCGVCGKKFKMKHHL 53

Query: 63 LRHMTLH 69
          + HM +H
Sbjct: 54 VGHMKIH 60

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.0 bits (100), Expect = 8e-06
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 3   IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
           IH    PY C+ C + F  +    RHV    +          K+++  + ++        
Sbjct: 59  IHTGIKPYECNICAKRFMWRDSFHRHV---TS--------CTKSYEAAKAEQNTTEASGP 107

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 4  HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
             +  Y C +C        +   HV+  H     P      ++ C EC    +    L 
Sbjct: 13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEH-----PNVVLNSSYVCVECNFLTKRYDALS 67

Query: 64 RHMTLHDPDSELIEQQVA 81
           H   + P  E  +  + 
Sbjct: 68 EHNLKYHPGEENFKLTMV 85

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 24/103 (23%)

Query: 1   MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNL-YHNPH----------------------- 36
             I    + + C  C   +     L  H+N   H                          
Sbjct: 11  GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70

Query: 37  YVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ 79
                  +K  KC  C  +F    +L  HM       ++    
Sbjct: 71  MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 41.3 bits (98), Expect = 3e-06
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C  C   FRH   L  H+ +H
Sbjct: 9  EKPYPCEICGTRFRHLQTLKSHLRIH 34

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 11/69 (15%)

Query: 3  IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           H  + PY C    CD  F +   L RH    H           K  +C  C ++F    
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRK-HT--------GAKPFQCGVCNRSFSRSD 89

Query: 61 NLLRHMTLH 69
          +L  HM  H
Sbjct: 90 HLALHMKRH 98

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 9   PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
            ++C  C   F     LK+H+              E T  CP CKK F    + L H+
Sbjct: 74  QFVCPLCLMPFSSSVSLKQHIRY-----------TEHTKVCPVCKKEFTSTDSALDHV 120

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 23/72 (31%)

Query: 3  IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH------KCPECKK 54
           H  Q PY C H  CD+ F     LKRH               EK H      K   C  
Sbjct: 25 SHTQQLPYECPHEGCDKRFSLPSRLKRH---------------EKVHAGYPCKKDDSCSF 69

Query: 55 AFRHKGNLLRHM 66
            +     L+H+
Sbjct: 70 VGKTWTLYLKHV 81

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 9  PYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM 66
          PY C    CD+ F +   L RH+ + H          +K  +C  C + F    +L  H+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRI-HT--------GQKPFQCRICMRNFSRSDHLTTHI 69

Query: 67 TLH 69
            H
Sbjct: 70 RTH 72

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 5e-05
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EKT KC EC   F    +L  H  +H
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVH 35

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 5e-05
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          E+ H+C +C K F    N ++H  +H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIH 35

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 1   MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAF 56
            L H  +  + CD   CD  F  K  +K+H N +HN            + C    C KAF
Sbjct: 64  SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV-------YVCHFENCGKAF 116

Query: 57  RHKGNLLRHMTLH 69
           +    L  H   H
Sbjct: 117 KKHNQLKVHQFSH 129

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 8e-05
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          E    C EC K F HK NL+ H  +H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIH 35

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.2 bits (88), Expect = 8e-05
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLH 69
          Y+C+ C    ++  +LK+H+  + +          + + C  C  +F+ KGNL +HM   
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTD---------VRPYHCTYCNFSFKTKGNLTKHMKSK 52

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C ECK+ F     L++H  +H
Sbjct: 8  EKPYSCAECKETFSDNNRLVQHQKMH 33

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          E  + C +C K+F  +G+L  H    
Sbjct: 9  ETPYLCGQCGKSFTQRGSLAVHQRSC 34

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 16/67 (23%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNL 62
          IH+      C  C   F ++  L R                 KT  C +C+K    +  L
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRR----------------KTPMCEKCRKDSCQEAAL 55

Query: 63 LRHMTLH 69
           +     
Sbjct: 56 NKDEGNE 62

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK ++C EC KAF  + NL  H  +H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIH 35

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  KC  C K+F  +  L RH  +H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC KAFR   NL  H  +H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIH 35

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC +C K +  + NL  H  +H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  KC EC KAF  K  L+ H   H
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          +K  +C  C K+FR KGNL+ H  +H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK+H C EC K F +   L  H  +H
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVH 35

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           K+H+C EC + F  K +L +H  +H
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIH 35

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 3  IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKG 60
           H  + PY CD   C   F +   L RH    H           +  +C +C +AF    
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HT--------GHRPFQCQKCDRAFSRSD 79

Query: 61 NLLRHMTLH 69
          +L  HM  H
Sbjct: 80 HLALHMKRH 88

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          ++ ++C EC K+FR KG+L  H  +H
Sbjct: 8  QRVYECQECGKSFRQKGSLTLHERIH 33

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC +C K+F  K  L  H   H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C EC KAF  + NL++H  +H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC  C   F    +L  H+ +H
Sbjct: 9  EKPYKCETCGARFVQVAHLRAHVLIH 34

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 2e-04
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
             +KC +C+K+F  K  LL H  +H
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMH 35

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC K FRH   L RH  +H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIH 35

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  +C EC+KAF  K NL+ H   H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 2e-04
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC K ++ + +L  H  +H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          E+ + C  C KAF  + NL++H  +H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC  C K+FR+  +L  H  +H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC K F  + +L  H  +H
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVH 35

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC KAFR + +L  H   H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  +C EC   F    +L +H+  H
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSH 35

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C EC KAF H   L  H  +H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC +C K +  K NL  H  +H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVH 35

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK ++C EC K+F     L +H   H
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITH 35

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK   C  C+KAF  K  LL H   H
Sbjct: 8  EKPFGCSCCEKAFSSKSYLLVHQQTH 33

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          E+ + C EC K F    +L+ H+  H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           K + C EC KAF    +L  H  +H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIH 35

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK ++C +C KAF  KG+L+ H+ +H
Sbjct: 9  EKPYRCDQCGKAFSQKGSLIVHIRVH 34

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK ++C EC KAF  K NL +H  +H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          +K ++C EC+K F   G+L +H  +H
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVH 35

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 10/26 (38%), Positives = 10/26 (38%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  KC EC K F        H   H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSH 35

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C  C KAF     L+RH  +H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK ++C  C+KAF H  +L +H  +H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC KAF    +  +H  LH
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLH 35

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           K + C EC KAFR K  L+ H   H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTH 35

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           K++ C EC KAF    +L RH  +H
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIH 35

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK   C +C KAF     L +H  +H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIH 35

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  KC EC K++  + +L +H  +H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  KC EC K F  +  L  H  LH
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLH 35

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.1 bits (82), Expect = 7e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC K FR   +L RH  +H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIH 35

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          ++ ++C EC KAF+ K +L+ H   H
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSH 35

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK ++C  C KAF H+ +L  H  +H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           K  +C EC KAF  K  L  H  +H
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIH 35

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC KAF    +L  H  +H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIH 35

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C EC K F  K  L  H   H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 34.9 bits (81), Expect = 8e-04
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C EC K+FR    LL+H  +H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 4  HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLL 63
           + +N  +C +C   F   +L + H +            + K   C EC + F+   ++ 
Sbjct: 37 RLCRNAAVCPYCSLRFFSPELKQEHES----------KCEYKKLTCLECMRTFKSSFSIW 86

Query: 64 RH-MTLHDPDS 73
          RH + +H+ ++
Sbjct: 87 RHQVEVHNQNN 97

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          +K  KC ECKK F    +L  H  +H
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIH 35

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           K + C +C K F  K  L+ H   H
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSH 35

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  KC EC KAFR   +L  H+ +H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK +KC EC KAF     L RH  +H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C EC KAF  K  L+ HM  H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 34.8 bits (81), Expect = 9e-04
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK  +C EC K+F     L  H  +H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 9e-04
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          E+  KC EC K F  + +L  H+ LH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.78
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.74
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.73
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.73
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.73
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.72
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.72
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.71
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.69
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.69
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.68
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.68
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.68
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.68
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.66
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.66
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.66
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.65
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.65
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.65
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.64
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.63
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.63
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.62
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.62
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.62
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.62
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.62
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.61
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.61
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.6
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.59
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.58
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.57
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.56
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.55
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.55
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.55
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.54
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.52
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.52
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.52
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.51
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.51
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.51
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.51
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.5
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.49
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.48
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.47
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.47
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.46
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.46
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.46
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.46
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.45
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.45
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.45
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.45
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.45
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.45
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.44
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.44
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.44
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.44
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.44
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.43
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.43
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.43
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.42
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.42
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.42
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.42
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.42
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.41
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.4
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.38
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.38
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.36
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.36
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.34
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.34
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.33
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.33
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.31
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.31
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.31
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.31
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.3
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.3
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.3
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.29
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.29
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.28
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.25
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.24
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.22
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.17
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.15
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.13
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.13
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.12
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.12
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.1
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.1
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.1
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.09
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.09
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.08
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.08
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.04
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.03
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.03
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.03
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.01
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.01
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.0
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.99
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.99
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.98
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.96
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.94
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.93
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.93
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.92
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.92
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.92
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.92
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.91
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.89
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.89
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.89
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.88
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.86
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.86
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.85
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.85
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.85
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.84
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.84
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.81
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.81
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.8
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.78
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.77
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.76
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.75
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.73
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.72
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.71
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.71
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.7
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.66
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.66
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.63
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.62
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.62
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.6
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.59
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.59
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.58
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.58
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.57
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.56
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.56
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.56
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.55
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.55
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.55
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.53
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.53
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.53
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.52
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.51
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.91
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.5
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.5
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.89
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.49
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.48
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.47
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.46
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.44
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.43
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.81
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.43
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.4
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.75
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.39
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.38
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.72
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.71
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.35
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.32
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.25
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.21
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.2
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.12
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.94
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.75
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.59
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.25
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.06
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.64
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.44
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.98
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	93.1
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	93.01
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.7
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.31
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	92.13
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	89.38
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	89.04
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	86.98
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.73
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	86.7
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	86.04
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.92
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	84.47
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	83.93
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	83.31
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	82.88
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	82.61
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	81.05
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	80.92

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.83  E-value=3.2e-21  Score=117.84  Aligned_cols=58  Identities=31%  Similarity=0.758  Sum_probs=55.4

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      ||||.|.+|++.|.....|..|+++|         ++++||.|..||++|.+.++|..|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~H---------t~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAH---------LGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHH---------HTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHh---------CCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            79999999999999999999999998         78999999999999999999999999999874

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.78  E-value=1.3e-21  Score=138.38  Aligned_cols=84  Identities=20%  Similarity=0.249  Sum_probs=76.8

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      ++|+|++||+|++|++.|.....|..|+++|         ++++||.|..|++.|.+.+.|..|+++|.++++|.|..|+
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~   85 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIH---------SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACG   85 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHH---------HCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSC
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHc---------CCCCCeeCCccCeecccccchhhhccccCCCccccCCCCC
Confidence            5799999999999999999999999999998         6789999999999999999999999999999999999999


Q ss_pred             Hhhhcccceeeec
Q psy9958          82 LKLGRQKKVHIID   94 (181)
Q Consensus        82 ~~~~~~~~~~~~~   94 (181)
                      ..|.....+..+.
T Consensus        86 k~F~~~~~L~~H~   98 (133)
T 2lt7_A           86 KSFINYQFMSSHI   98 (133)
T ss_dssp             CEESSHHHHHHHH
T ss_pred             CCcCCHHHHHHHh
Confidence            9887766554443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.2e-18  Score=109.83  Aligned_cols=64  Identities=33%  Similarity=0.652  Sum_probs=60.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +++|++++||.|.+|++.|.....|..|++.|         .+++||.|..|++.|.....|..|+++|+++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h---------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVH---------TGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGG---------GCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhc---------CCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            47899999999999999999999999999998         57899999999999999999999999998764

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.73  E-value=1.9e-18  Score=109.38  Aligned_cols=64  Identities=30%  Similarity=0.602  Sum_probs=60.6

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      .++++++|.|..|++.|.....|..|++.|         .++++|.|..|++.|.+...|.+|+++|+++++|
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H---------~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVH---------TGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHH---------CCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHc---------CCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            578899999999999999999999999998         6789999999999999999999999999998875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=1.3e-18  Score=107.61  Aligned_cols=64  Identities=23%  Similarity=0.466  Sum_probs=58.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +++|++++||.|+.|++.|.....|..|++.+|.       .+++||.|+.|++.|.+.+.|..|+++|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~-------~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK-------RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS-------SSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcC-------CCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            5789999999999999999999999999998542       368999999999999999999999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=4.9e-19  Score=114.80  Aligned_cols=76  Identities=33%  Similarity=0.641  Sum_probs=66.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      |++|++++||.|.+|++.|.....|..|++.+|...     ...++|.|..|++.|.....|..|+++|++.+++.|..|
T Consensus         7 ~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~-----~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN-----FVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             STTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS-----CCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             cceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc-----CCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            689999999999999999999999999999886310     113799999999999999999999999999998876554


Q ss_pred             H
Q psy9958          81 A   81 (181)
Q Consensus        81 ~   81 (181)
                      +
T Consensus        82 ~   82 (86)
T 1x6h_A           82 G   82 (86)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.7e-18  Score=110.42  Aligned_cols=67  Identities=28%  Similarity=0.539  Sum_probs=62.4

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      ..+.+++||.|.+|++.|.....|..|+++|         .+.++|.|..|++.|.....|..|+++|+++++|.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTH---------TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTT---------CCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHc---------CCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3577899999999999999999999999998         578999999999999999999999999999998864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.4e-18  Score=107.01  Aligned_cols=65  Identities=22%  Similarity=0.352  Sum_probs=60.7

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      ..|++++||.|.+|++.|.....|..|+++|         .++++|.|..|++.|.....|..|+++|+++++.
T Consensus         2 ss~~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH---------CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CSCCCCCSEECSSSSCEESSHHHHHHHHGGG---------CCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHc---------CCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            3689999999999999999999999999998         6789999999999999999999999999988764

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=9.7e-19  Score=116.90  Aligned_cols=66  Identities=23%  Similarity=0.427  Sum_probs=61.2

Q ss_pred             CcccCCCCceecccchhhcc-ChhhHHHHHHHhcCCCCCCCCCC-CCcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFR-QKQLLKRHVNLYHNPHYVPPSPK-EKTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~-~~~~L~~H~~~hh~~~~~~~~~~-~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      |++|++++||.|.+|++.|. .+..|+.|+++|+         + +++|.|.+|++.|.++..|.+|+++|++++++
T Consensus        16 ~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~---------~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ---------KLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             HHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH---------HHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             HHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc---------CCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            46899999999999999999 9999999999984         5 78999999999999999999999999988664

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1e-17  Score=106.74  Aligned_cols=64  Identities=25%  Similarity=0.483  Sum_probs=57.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCC-CCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPK-EKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~-~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      |++|++++||.|.+|++.|.....|..|++.+|        .+ .++|.|..|++.|.....|..|+++|++.
T Consensus         7 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h--------~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKH--------TENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCSCCCSEECTTTCCEESCHHHHHHHHHHHS--------SSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             ccccCCCCCeECCCcCchhCCHHHHHHHHHHhc--------CCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            689999999999999999999999999998554        34 48999999999999999999999987654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=1e-18  Score=118.58  Aligned_cols=82  Identities=22%  Similarity=0.352  Sum_probs=74.2

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      ..|++++||.| .|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|+++++|.|..|+
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMH---------LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA   72 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHH---------SCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHc---------CCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCc
Confidence            57999999999 9999999999999999998         5689999999999999999999999999999999999999


Q ss_pred             Hhhhcccceeee
Q psy9958          82 LKLGRQKKVHII   93 (181)
Q Consensus        82 ~~~~~~~~~~~~   93 (181)
                      ..|.....+..|
T Consensus        73 ~~f~~~~~l~~H   84 (110)
T 2csh_A           73 KRFMWRDSFHRH   84 (110)
T ss_dssp             CEESCHHHHHHH
T ss_pred             chhcCHHHHHHH
Confidence            888766544433

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.69  E-value=1.4e-17  Score=108.55  Aligned_cols=63  Identities=24%  Similarity=0.493  Sum_probs=56.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHH-HhcCCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM-TLHDPD   72 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~-~~h~~~   72 (181)
                      +.++...++|.|++|++.|.++..|.+|+++|         ++++||.|..|+++|.++.+|.+|+ ++|.++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H---------~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLL---------HAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTT---------SCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhc---------cCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            35678889999999999999999999999998         6789999999999999999999997 457665

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.5e-18  Score=113.72  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=74.4

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHH
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVAL   82 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~   82 (181)
                      .+.+++||.|.+|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|+++++|.|..|+.
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   72 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCH---------TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPY   72 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGC---------CCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhc---------CCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence            467899999999999999999999999988         56899999999999999999999999999999999999998


Q ss_pred             hhhcccceeeec
Q psy9958          83 KLGRQKKVHIID   94 (181)
Q Consensus        83 ~~~~~~~~~~~~   94 (181)
                      .|.....+..|.
T Consensus        73 ~f~~~~~l~~H~   84 (96)
T 2dmd_A           73 ASRNSSQLTVHL   84 (96)
T ss_dssp             EESSHHHHHHHH
T ss_pred             ccCCHHHHHHHH
Confidence            887665544443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.68  E-value=7.1e-18  Score=119.00  Aligned_cols=75  Identities=17%  Similarity=0.274  Sum_probs=66.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCCh------
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSE------   74 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~------   74 (181)
                      |++|++++||.|++|++.|.....|..|+++|         ++++||.|+.|++.|.+.+.|..|+++|+++++      
T Consensus        42 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~  112 (133)
T 2lt7_A           42 FNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH---------TGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKL  112 (133)
T ss_dssp             HHHHHCCSCEECSSSSCEESSHHHHHHHHHHH---------HTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCC
T ss_pred             HHHcCCCCCeeCCccCeecccccchhhhcccc---------CCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCC
Confidence            46899999999999999999999999999998         688999999999999999999999999988755      


Q ss_pred             hHHHHHHHhh
Q psy9958          75 LIEQQVALKL   84 (181)
Q Consensus        75 ~~~~~~~~~~   84 (181)
                      |.|..|+..|
T Consensus       113 ~~C~~C~k~~  122 (133)
T 2lt7_A          113 YRLHPCRSLQ  122 (133)
T ss_dssp             EEECCCCSSC
T ss_pred             eecCCCCchh
Confidence            4565565433

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.2e-18  Score=116.61  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      +++|++++||.|.+|++.|.....|..|++.|.           ++|.|..|++.|.....|..|++ |.++++|.|..|
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~-----------~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C   75 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-----------NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLEC   75 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH-----------HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGG
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC-----------CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccc
Confidence            578999999999999999999999999999972           79999999999999999999996 999999999999


Q ss_pred             HHhhhcccceeeec
Q psy9958          81 ALKLGRQKKVHIID   94 (181)
Q Consensus        81 ~~~~~~~~~~~~~~   94 (181)
                      +..|.....+..|.
T Consensus        76 ~~~f~~~~~L~~H~   89 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQ   89 (107)
T ss_dssp             TEECSSHHHHHHHH
T ss_pred             cchhCCHHHHHHHH
Confidence            99887765544433

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.68  E-value=9.9e-18  Score=109.49  Aligned_cols=75  Identities=21%  Similarity=0.465  Sum_probs=68.0

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhc
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGR   86 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~   86 (181)
                      ++||.|.+|++.|.....|..|+++|         .+++||.|..|++.|.....|..|+++|++ .++.|..|+..|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~   70 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTH---------TGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSK   70 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH---------HCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHc---------CCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHH
Confidence            58999999999999999999999998         578999999999999999999999999985 88999999998876


Q ss_pred             cccee
Q psy9958          87 QKKVH   91 (181)
Q Consensus        87 ~~~~~   91 (181)
                      ...+.
T Consensus        71 ~~~L~   75 (88)
T 1llm_C           71 NYHLE   75 (88)
T ss_dssp             HHHHH
T ss_pred             HhhhH
Confidence            65433

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2e-17  Score=111.49  Aligned_cols=70  Identities=17%  Similarity=0.266  Sum_probs=61.7

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHH-hcCCCCCCCCCCCCcccCCcccccCCCchhHHHH-HHhcCCCChhHHHH
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNL-YHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRH-MTLHDPDSELIEQQ   79 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~-hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H-~~~h~~~~~~~~~~   79 (181)
                      -+|++||.|..|++.|..+..|..|++. |.+.      .+++||.|..||+.|..++.|..| +++|.++++|.|..
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~------~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~   84 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV------VLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM   84 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC------CCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC------CCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCc
Confidence            3689999999999999999999999985 5210      247899999999999999999999 89999999998764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=5.4e-18  Score=108.25  Aligned_cols=72  Identities=29%  Similarity=0.537  Sum_probs=66.5

Q ss_pred             cCCCCceeccc--chhhccChhhHHHHHH-HhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958           4 HIDQNPYLCDH--CDQTFRQKQLLKRHVN-LYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus         4 Ht~ekp~~C~~--C~k~f~~~~~L~~H~~-~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      .+++++|.|..  |++.|.....|..|++ .|         .+.++|.|..  |++.|.++..|..|+++|+++++|.|.
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H---------~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   72 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH---------IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   72 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGG---------GSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHh---------CCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCC
Confidence            47899999998  9999999999999999 56         5789999999  999999999999999999999999999


Q ss_pred             HHHHhh
Q psy9958          79 QVALKL   84 (181)
Q Consensus        79 ~~~~~~   84 (181)
                      .|+..|
T Consensus        73 ~C~k~F   78 (79)
T 2dlk_A           73 FSGPSS   78 (79)
T ss_dssp             SSSCCC
T ss_pred             CCCCCC
Confidence            887765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.66  E-value=3e-17  Score=98.33  Aligned_cols=57  Identities=28%  Similarity=0.447  Sum_probs=50.1

Q ss_pred             CCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958           6 DQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus         6 ~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |++||.|.+|++.|.....|..|+++|         .+++||.|+.|++.|.....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTH---------TGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHH---------HCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHc---------CCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            579999999999999999999999998         578999999999999999999999999874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=3.7e-17  Score=104.30  Aligned_cols=66  Identities=21%  Similarity=0.255  Sum_probs=56.8

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHh-cCCCCh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL-HDPDSE   74 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~-h~~~~~   74 (181)
                      +|++++||.|.+|++.|.....|..|+++|++.      .++++|.|..|++.|.....|..|++. |.+..+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~------~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAET------VAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHH------TTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc------CCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            599999999999999999999999999998520      137999999999999999999999955 554443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.7e-18  Score=118.45  Aligned_cols=84  Identities=15%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHH--hcCCCCCCCCCCCCcc-cCCcccccC--CCchhHHHHHHhcCCCChh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNL--YHNPHYVPPSPKEKTH-KCPECKKAF--RHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~--hh~~~~~~~~~~~~~~-~C~~C~k~F--~~~~~l~~H~~~h~~~~~~   75 (181)
                      |++|++++||.|.+|++.|.....|..|++.  |         .+.+++ .|..|++.|  .....|..|+++|.++++|
T Consensus        11 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h---------~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~   81 (115)
T 2dmi_A           11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGH---------YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL   81 (115)
T ss_dssp             CCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCC---------CBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSC
T ss_pred             eeeeCCCCCEECCccCchhcCHHHHHHHHHHhCc---------cccCCCccCCCCCcccccccHHHHHHHhhccCCCcce
Confidence            5789999999999999999999999999998  4         345554 599999988  8999999999999999999


Q ss_pred             HHHHHHHhhhcccceeee
Q psy9958          76 IEQQVALKLGRQKKVHII   93 (181)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~   93 (181)
                      .|..|+..|.....+..|
T Consensus        82 ~C~~C~k~f~~~~~L~~H   99 (115)
T 2dmi_A           82 KCMYCGHSFESLQDLSVH   99 (115)
T ss_dssp             BCSSSCCBCSSHHHHHHH
T ss_pred             ECCCCCCccCCHHHHHHH
Confidence            999999888776554443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.65  E-value=9.4e-18  Score=112.99  Aligned_cols=81  Identities=20%  Similarity=0.420  Sum_probs=72.0

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHh
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALK   83 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~   83 (181)
                      ..++++|.|.+|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|+++++|.|..|+..
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   82 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTH---------TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKG   82 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHH---------CCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCC
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHc---------CCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCc
Confidence            45688999999999999999999999998         568999999999999999999999999999999999999988


Q ss_pred             hhcccceeee
Q psy9958          84 LGRQKKVHII   93 (181)
Q Consensus        84 ~~~~~~~~~~   93 (181)
                      |.....+..|
T Consensus        83 f~~~~~L~~H   92 (106)
T 2ee8_A           83 FCQSRTLAVH   92 (106)
T ss_dssp             CSSHHHHHHH
T ss_pred             ccCHHHHHHH
Confidence            8666544333

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=5.7e-18  Score=111.78  Aligned_cols=81  Identities=25%  Similarity=0.394  Sum_probs=72.1

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCC--ChhHHHHHH
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPD--SELIEQQVA   81 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~--~~~~~~~~~   81 (181)
                      .+++++|.|.+|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|++.  ++|.|..|+
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~   72 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSH---------SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG   72 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHS---------CSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSC
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhc---------CCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCcc
Confidence            36889999999999999999999999998         5789999999999999999999999999987  899999999


Q ss_pred             Hhhhcccceeee
Q psy9958          82 LKLGRQKKVHII   93 (181)
Q Consensus        82 ~~~~~~~~~~~~   93 (181)
                      ..|.....+..|
T Consensus        73 ~~f~~~~~L~~H   84 (95)
T 2yt9_A           73 KGFSRPDHLNGH   84 (95)
T ss_dssp             CCBSSHHHHHHH
T ss_pred             chhCCHHHHHHH
Confidence            888766554443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=4.3e-18  Score=117.41  Aligned_cols=86  Identities=20%  Similarity=0.380  Sum_probs=70.4

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      ++|.+++||.|.+|++.|.+...|..|++.++.      +.+.++|.|..|++.|.....|..|+++|+++++|.|..|+
T Consensus        28 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~------~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  101 (124)
T 2dlq_A           28 RKHTGEKPFECPKCGKCYFRKENLLEHEARNCM------NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCS  101 (124)
T ss_dssp             HHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCC------CSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSC
T ss_pred             HhCCCCCCeECCCCCchhcCHHHHHHHHhhhhc------CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCcc
Confidence            567888888888888888888888888886531      25678999999999999999999999999999999999998


Q ss_pred             Hhhhcccceeee
Q psy9958          82 LKLGRQKKVHII   93 (181)
Q Consensus        82 ~~~~~~~~~~~~   93 (181)
                      ..|.....+..|
T Consensus       102 ~~f~~~~~l~~H  113 (124)
T 2dlq_A          102 QQFMQKKDLQSH  113 (124)
T ss_dssp             CEESSHHHHHHH
T ss_pred             chhCCHHHHHHH
Confidence            888766554443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.64  E-value=8e-17  Score=108.37  Aligned_cols=67  Identities=39%  Similarity=0.672  Sum_probs=62.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhH
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELI   76 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~   76 (181)
                      |++|++++||.|.+|++.|.....|..|++.|         .++++|.|..|++.|.+...|..|+++|+++++|.
T Consensus        37 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           37 ERTHTDERPYTCDICHKAFRRQDHLRDHRYIH---------SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGS---------CCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             HHHcCCCCCcCCCCccchhCCHHHHHHHHHHh---------CCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            35799999999999999999999999999998         57899999999999999999999999999998763

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.63  E-value=6.8e-18  Score=110.23  Aligned_cols=79  Identities=24%  Similarity=0.504  Sum_probs=67.9

Q ss_pred             CCCceecc--cchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHh
Q psy9958           6 DQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALK   83 (181)
Q Consensus         6 ~ekp~~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~   83 (181)
                      |++||.|.  .|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|++.++|.|..|+..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   71 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIH---------TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK   71 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHH---------HCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHh---------CCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCch
Confidence            57899998  5999999999999999998         467899999999999999999999999999999999999988


Q ss_pred             hhcccceeee
Q psy9958          84 LGRQKKVHII   93 (181)
Q Consensus        84 ~~~~~~~~~~   93 (181)
                      |.....+..|
T Consensus        72 f~~~~~l~~H   81 (90)
T 1a1h_A           72 FARSDERKRH   81 (90)
T ss_dssp             ESSHHHHHHH
T ss_pred             hCCHHHHHHH
Confidence            8766544443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.63  E-value=6.2e-17  Score=105.62  Aligned_cols=64  Identities=27%  Similarity=0.554  Sum_probs=58.6

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      |++|++++||.|..|++.|.....|..|++.|         .+.++|.|..|++.|.+.+.|..|+++|++++
T Consensus        26 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---------TGEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHHHCCCCEECTTTCCEESCHHHHHHHHHHH---------HCCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             HHHhCCCCCccCCCCCcccCCHHHHHHHHHHc---------CCCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            35789999999999999999999999999998         46899999999999999999999999998875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.5e-16  Score=104.02  Aligned_cols=65  Identities=31%  Similarity=0.567  Sum_probs=61.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCCh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      |++|++++||.|.+|++.|.....|..|++.|         .++++|.|..|++.|.....|..|+++|++++.
T Consensus        28 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           28 MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH---------SDERPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             GGGCCCCCSEECSSSCCEESSHHHHHHHHHHS---------CCCCCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             HHhcCCCCCEeCCCCCCccCCHHHHHHHHHHh---------CCCCCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            57899999999999999999999999999998         578999999999999999999999999998764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.62  E-value=5.2e-18  Score=116.31  Aligned_cols=77  Identities=26%  Similarity=0.538  Sum_probs=46.6

Q ss_pred             cccCCCCceecc--cchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH--
Q psy9958           2 LIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE--   77 (181)
Q Consensus         2 ~~Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~--   77 (181)
                      ++|++++||.|.  .|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|+++++|.|  
T Consensus        29 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (119)
T 2jp9_A           29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH---------TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRW   99 (119)
T ss_dssp             HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHH---------HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCS
T ss_pred             HhhCCCCCccCCCCCCcCccCCHHHHHHHHHHc---------CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCC
Confidence            345566666666  4666666666666666665         345666666666666666666666666666666666  


Q ss_pred             HHHHHhhhcc
Q psy9958          78 QQVALKLGRQ   87 (181)
Q Consensus        78 ~~~~~~~~~~   87 (181)
                      ..|+..|...
T Consensus       100 ~~C~~~f~~~  109 (119)
T 2jp9_A          100 PSCQKKFARS  109 (119)
T ss_dssp             TTCCCEESSH
T ss_pred             CCCccccCCH
Confidence            5565555443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.3e-16  Score=106.27  Aligned_cols=63  Identities=22%  Similarity=0.429  Sum_probs=57.1

Q ss_pred             cccCCCCceecccchhhc-cChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHH-HHhcCCCCh
Q psy9958           2 LIHIDQNPYLCDHCDQTF-RQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRH-MTLHDPDSE   74 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f-~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H-~~~h~~~~~   74 (181)
                      ++|++++||.|+.|++.| ..+..|..|+++| +         +++|.|..|+|.|..++.|..| +++|.+...
T Consensus        27 ~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~---------~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-K---------QEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             HHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-C---------CCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             HHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-C---------CCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            467889999999999999 9999999999998 4         6999999999999999999999 888976543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.62  E-value=2.5e-16  Score=94.26  Aligned_cols=56  Identities=27%  Similarity=0.668  Sum_probs=53.2

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      ||.|..|++.|.....|..|+++|         .++++|.|..|++.|.+.+.|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTH---------TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHT---------SSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhc---------CCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            799999999999999999999998         57899999999999999999999999998875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.62  E-value=7.6e-18  Score=124.87  Aligned_cols=83  Identities=28%  Similarity=0.540  Sum_probs=60.7

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      ++|.+++||.|.+|++.|.....|..|++.|         .++++|.|..|++.|.....|..|+++|+++++|.|..|+
T Consensus        98 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~  168 (190)
T 2i13_A           98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTH---------TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG  168 (190)
T ss_dssp             HHHHTCCCEECTTTCCEESSHHHHHHHHHHH---------HCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             HhcCCCCCCcCCCCCCccCCHHHHHHHHHHh---------CCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCC
Confidence            4566677777777777777777777777776         4567888888888888888888888888888888888887


Q ss_pred             Hhhhcccceeee
Q psy9958          82 LKLGRQKKVHII   93 (181)
Q Consensus        82 ~~~~~~~~~~~~   93 (181)
                      ..|.....+..|
T Consensus       169 ~~f~~~~~L~~H  180 (190)
T 2i13_A          169 KSFSRRDALNVH  180 (190)
T ss_dssp             CEESSHHHHHHH
T ss_pred             CccCCHHHHHHH
Confidence            777655544333

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=3.6e-16  Score=98.30  Aligned_cols=60  Identities=27%  Similarity=0.645  Sum_probs=55.8

Q ss_pred             cccCCCCceecc--cchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958           2 LIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         2 ~~Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      .+|++++||.|+  .|++.|.....|..|++.|         .+.++|.|..|++.|.+.+.|..|+++|+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIH---------TGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHH---------HCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhh---------CCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            468999999998  5999999999999999998         57899999999999999999999999884

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.61  E-value=1.4e-16  Score=102.05  Aligned_cols=73  Identities=18%  Similarity=0.446  Sum_probs=58.6

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhccc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQK   88 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~   88 (181)
                      ||.|.+|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|+++++|.|..|+..|....
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   71 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIH---------SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS   71 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH---------HTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred             CccCCCCcccccCchhHHHHHHHc---------CCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence            688888888888888888888887         45678888888888888888888888888888888888887776554


Q ss_pred             ce
Q psy9958          89 KV   90 (181)
Q Consensus        89 ~~   90 (181)
                      .+
T Consensus        72 ~l   73 (82)
T 2kmk_A           72 NL   73 (82)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.60  E-value=1.9e-17  Score=106.16  Aligned_cols=62  Identities=42%  Similarity=0.775  Sum_probs=57.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |++|.+++||.|..|++.|.....|..|++.|         .++++|.|..|++.|.+.+.|..|+++|++
T Consensus        21 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           21 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH---------TGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHTCCCEECSSSCCEESSHHHHHHHHHHH---------HTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             HHHcCCCCCeeCCcCChhhCCHHHHHHHHHHh---------cCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            35789999999999999999999999999998         468999999999999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.59  E-value=5.9e-17  Score=111.93  Aligned_cols=83  Identities=24%  Similarity=0.414  Sum_probs=71.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      |++| +.++|.|.+|++.|.....|..|++.|         .+.++|.|..  |++.|.+...|..|+++|+++++|.|.
T Consensus        27 ~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (124)
T 1ubd_C           27 LHTH-GPRVHVCAECGKAFVESSKLKRHQLVH---------TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP   96 (124)
T ss_dssp             HGGG-SCCCEECTTTCCEESSHHHHHHHGGGT---------SCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCC
T ss_pred             HHHc-CCCCeECCCCCchhCCHHHHHHHHHHc---------CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECC
Confidence            3567 889999999999999999999999987         5789999986  999999999999999999999999994


Q ss_pred             --HHHHhhhcccceeee
Q psy9958          79 --QVALKLGRQKKVHII   93 (181)
Q Consensus        79 --~~~~~~~~~~~~~~~   93 (181)
                        .|+..|.....+..|
T Consensus        97 ~~~C~~~f~~~~~L~~H  113 (124)
T 1ubd_C           97 FDGCNKKFAQSTNLKSH  113 (124)
T ss_dssp             STTCCCCCSSTTTTHHH
T ss_pred             CCCCCCccCCHHHHHHH
Confidence              588888776655444

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=8.9e-16  Score=92.82  Aligned_cols=56  Identities=30%  Similarity=0.708  Sum_probs=51.9

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHH-HhcCCC
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHM-TLHDPD   72 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~-~~h~~~   72 (181)
                      +||.|..|++.|.....|..|+++|         .++++|.|..|++.|.+.+.|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSH---------TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT---------TSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHh---------CCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            6899999999999999999999998         6789999999999999999999997 677765

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.57  E-value=4.3e-16  Score=115.38  Aligned_cols=66  Identities=30%  Similarity=0.586  Sum_probs=57.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         .++++|.|+.|++.|.....|..|+++|+++++|
T Consensus       125 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H---------~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTH---------TGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHCCCCEECTTTCCEESCHHHHHHHHHHH---------HCCCCEECTTTCCEESSHHHHHHHHTTC------
T ss_pred             HHHhCCCCCeECCCCCcccCCHHHHHHHHHhc---------CCCCCeECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            35789999999999999999999999999998         5789999999999999999999999999998875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.56  E-value=5.7e-16  Score=111.03  Aligned_cols=82  Identities=21%  Similarity=0.314  Sum_probs=69.3

Q ss_pred             cCCCCc--------eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcCCCC
Q psy9958           4 HIDQNP--------YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus         4 Ht~ekp--------~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      |.+.++        |.|.+|++.|.....|..|++.|         .+.++|.|..  |++.|.....|..|+++|++++
T Consensus        49 H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  119 (155)
T 2rpc_A           49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH---------TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK  119 (155)
T ss_dssp             TSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHH---------HCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSC
T ss_pred             cCCCcccCCccccccCCCCcccccCCHHHHHHHHHhc---------CCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCC
Confidence            777665        88999999999999999999998         4678999988  9999999999999999999999


Q ss_pred             hhHHHH--HHHhhhcccceeeec
Q psy9958          74 ELIEQQ--VALKLGRQKKVHIID   94 (181)
Q Consensus        74 ~~~~~~--~~~~~~~~~~~~~~~   94 (181)
                      +|.|..  |+..|.....+..|.
T Consensus       120 ~~~C~~~~C~k~f~~~~~L~~H~  142 (155)
T 2rpc_A          120 PFKCEFEGCDRRFANSSDRKKHM  142 (155)
T ss_dssp             SBCCSSTTCCCCBSSHHHHHHSS
T ss_pred             CccCCCCCCCCccCCHHHHHHHH
Confidence            999986  888887665544443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=3.3e-15  Score=98.32  Aligned_cols=65  Identities=28%  Similarity=0.540  Sum_probs=57.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHH-hcCCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMT-LHDPD   72 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~-~h~~~   72 (181)
                      |++|++++||.|.+|++.|.....|..|++.|+.       ...++|.|..|++.|.+...|..|++ .|.+.
T Consensus        27 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           27 KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-------SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             HHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCC-------CCCSSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             HHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcC-------CCCCceECCCccchhCCHHHHHHHHHHhcCCC
Confidence            3679999999999999999999999999999853       12389999999999999999999986 67654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=1.2e-16  Score=114.35  Aligned_cols=78  Identities=22%  Similarity=0.455  Sum_probs=42.1

Q ss_pred             ccCCCCceecccc-----hhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcCCCChh
Q psy9958           3 IHIDQNPYLCDHC-----DQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         3 ~Ht~ekp~~C~~C-----~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      +|++++||.|.+|     ++.|.....|..|++.|         .+.++|.|.+  |++.|.....|..|+++|++.++|
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~   98 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH---------TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY   98 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHH---------HCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCE
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhc---------CCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCe
Confidence            4555555555432     25555555555565555         2345555553  555555555555555555555555


Q ss_pred             HHHH--HHHhhhcccc
Q psy9958          76 IEQQ--VALKLGRQKK   89 (181)
Q Consensus        76 ~~~~--~~~~~~~~~~   89 (181)
                      .|..  |+..|.....
T Consensus        99 ~C~~~~C~~~f~~~~~  114 (155)
T 2gli_A           99 MCEHEGCSKAFSNASD  114 (155)
T ss_dssp             ECCSTTCCCEESSSST
T ss_pred             eCCCCCCCCccCCHHH
Confidence            5554  5555544433

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.55  E-value=3.1e-15  Score=99.27  Aligned_cols=77  Identities=22%  Similarity=0.393  Sum_probs=67.3

Q ss_pred             CCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC--cccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958           6 DQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus         6 ~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      ..++|.|.+  |++.|.....|..|++.|         .+.++|.|.  .|++.|.....|..|+++|+++++|.|..|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTH---------TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHH---------SCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHh---------CCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            467899997  999999999999999998         568899996  5999999999999999999999999999998


Q ss_pred             Hhhhccccee
Q psy9958          82 LKLGRQKKVH   91 (181)
Q Consensus        82 ~~~~~~~~~~   91 (181)
                      ..|.....+.
T Consensus        83 ~~f~~~~~l~   92 (100)
T 2ebt_A           83 RSFSRSDHLA   92 (100)
T ss_dssp             CBCSSHHHHH
T ss_pred             CccCCHHHHH
Confidence            8876655443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.54  E-value=2e-16  Score=108.31  Aligned_cols=80  Identities=20%  Similarity=0.449  Sum_probs=71.8

Q ss_pred             cCCCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC--cccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958           4 HIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus         4 Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++||.|.+  |++.|.....|..|++.|         .+.++|.|.  .|++.|.....|..|+++|++.++|.|..
T Consensus         1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   71 (119)
T 2jp9_A            1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKH---------TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT   71 (119)
T ss_dssp             CCSSCCBCCCSTTSCCCBSCHHHHHHHHHHH---------HTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCCCeeeeCCCCCCcchhCCHHHHHHHHHhh---------CCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCc
Confidence            47899999998  999999999999999998         468999999  79999999999999999999999999999


Q ss_pred             HHHhhhcccceee
Q psy9958          80 VALKLGRQKKVHI   92 (181)
Q Consensus        80 ~~~~~~~~~~~~~   92 (181)
                      |+..|.....+..
T Consensus        72 C~~~f~~~~~l~~   84 (119)
T 2jp9_A           72 CQRKFSRSDHLKT   84 (119)
T ss_dssp             TCCEESCHHHHHH
T ss_pred             cCchhCCHHHHHH
Confidence            9988866554433

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.52  E-value=5.7e-15  Score=101.85  Aligned_cols=66  Identities=27%  Similarity=0.613  Sum_probs=57.0

Q ss_pred             CcccCCCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC--cccccCCCchhHHHHHHhcCCCChh
Q psy9958           1 MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      |++|++++||.|.+  |++.|.....|..|++.|         .++++|.|+  .|++.|.+.+.|..|+++|++++++
T Consensus        54 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           54 QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH---------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             GGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHH---------HCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHh---------CCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            47899999999986  999999999999999998         568999996  4999999999999999999998765

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=2.4e-15  Score=101.79  Aligned_cols=62  Identities=29%  Similarity=0.575  Sum_probs=57.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |++|.+++||.|.+|++.|.....|..|++.|         .+.++|.|..|++.|.....|..|+++|+.
T Consensus        29 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           29 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH---------TGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             HHHHSCCCSEECTTTSCEESSSHHHHHHHTTT---------CCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             HHHcCCCcCccCCCCCcccCCHHHHHHHHHHc---------CCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            46799999999999999999999999999988         578999999999999999999999998764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.52  E-value=5.3e-15  Score=96.10  Aligned_cols=78  Identities=23%  Similarity=0.412  Sum_probs=65.1

Q ss_pred             CCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC--cccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958           6 DQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus         6 ~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      ..++|.|.+  |++.|.....|..|++.|         .+.++|.|+  .|++.|.....|..|+++|.++++|.|..|+
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH---------TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD   72 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTTS---------CSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSS
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHhc---------CCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            357899999  999999999999999887         567899997  5999999999999999999999999998888


Q ss_pred             Hhhhcccceee
Q psy9958          82 LKLGRQKKVHI   92 (181)
Q Consensus        82 ~~~~~~~~~~~   92 (181)
                      ..|.....+..
T Consensus        73 ~~f~~~~~l~~   83 (89)
T 2wbs_A           73 RAFSRSDHLAL   83 (89)
T ss_dssp             CEESSHHHHHH
T ss_pred             cccCCHHHHHH
Confidence            87766554433

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.52  E-value=4.3e-15  Score=103.39  Aligned_cols=60  Identities=27%  Similarity=0.500  Sum_probs=54.6

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      .|++++||.|.+|++.|.....|..|+++|           ++||.|..|++.|.+.++|.+|+++|++..
T Consensus        68 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H-----------~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT-----------EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             HHHHHCSEECTTTCCEESSHHHHHHHHHHT-----------CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             HhCCCCCeECCCCCcccCCHhHHHHHHHHC-----------CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            478899999999999999999999999986           378999999999999999999999998763

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.51  E-value=8.8e-16  Score=105.68  Aligned_cols=80  Identities=24%  Similarity=0.413  Sum_probs=70.6

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHh---cCCCChhHHHHH
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL---HDPDSELIEQQV   80 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~---h~~~~~~~~~~~   80 (181)
                      .+++++|.|.+|++.|.....|..|++.|         .+.++|.|..|++.|.+...|..|++.   |.+.++|.|..|
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C   72 (124)
T 2dlq_A            2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH---------TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC   72 (124)
T ss_dssp             CCCCSSCCCTTTCCCCSSHHHHHHHHHHH---------SSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSS
T ss_pred             CCCCCCCCCCCCCCcCCCHHHHHHHHHhC---------CCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCC
Confidence            46899999999999999999999999998         568999999999999999999999986   578889999999


Q ss_pred             HHhhhcccceee
Q psy9958          81 ALKLGRQKKVHI   92 (181)
Q Consensus        81 ~~~~~~~~~~~~   92 (181)
                      +..|.....+..
T Consensus        73 ~~~f~~~~~l~~   84 (124)
T 2dlq_A           73 QETFRRRMELRL   84 (124)
T ss_dssp             CCEESSHHHHHH
T ss_pred             CCccCCHHHHHH
Confidence            988766554433

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.51  E-value=5.6e-16  Score=111.06  Aligned_cols=78  Identities=23%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCc--------ccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKT--------HKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~--------~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      +...++|.|..|++.|.....|..|++.+|        .+.++        |.|..|++.|.....|..|+++|++.++|
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H--------~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   91 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH--------VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPF   91 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTT--------SCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSE
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhc--------CCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcc
Confidence            445667777777777777777777777643        22222        67777777777777777777777777777


Q ss_pred             HHHH--HHHhhhcccc
Q psy9958          76 IEQQ--VALKLGRQKK   89 (181)
Q Consensus        76 ~~~~--~~~~~~~~~~   89 (181)
                      .|..  |+..|.....
T Consensus        92 ~C~~~~C~~~f~~~~~  107 (155)
T 2rpc_A           92 PCPFPGCGKIFARSEN  107 (155)
T ss_dssp             ECSCTTTCCEESCHHH
T ss_pred             cCCcCCCCCccCCHHH
Confidence            7765  7666654443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=9.5e-16  Score=101.81  Aligned_cols=62  Identities=29%  Similarity=0.602  Sum_probs=57.4

Q ss_pred             CcccCCCCceecc--cchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958           1 MLIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus         1 ~~~Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |++|+++++|.|.  .|++.|.....|..|++.|         .++++|.|..|++.|.....|..|+++|.+
T Consensus        37 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH---------TGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             HHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHH---------TSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             HHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHh---------CCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            3679999999997  5999999999999999998         578999999999999999999999999864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=6.5e-15  Score=90.96  Aligned_cols=60  Identities=15%  Similarity=0.268  Sum_probs=54.8

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC-cccccCCCchhHHHHHHhcCCCCh
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP-ECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~-~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      +.+++||.|.+|++.|. ...|..|+++ .         +++||.|. .|++.|..++.|..|+++|.+..+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~---------~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-C---------PRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-C---------SSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-c---------CCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            56789999999999999 9999999987 3         68999999 999999999999999999977654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.50  E-value=1.1e-15  Score=113.14  Aligned_cols=87  Identities=25%  Similarity=0.441  Sum_probs=65.9

Q ss_pred             CcccCCCCceecc--cchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC--CcccccCCCchhHHHHHHhcCCCChhH
Q psy9958           1 MLIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC--PECKKAFRHKGNLLRHMTLHDPDSELI   76 (181)
Q Consensus         1 ~~~Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C--~~C~k~F~~~~~l~~H~~~h~~~~~~~   76 (181)
                      |++|++++||.|.  .|++.|.+...|..|++..|.       .+.++|.|  ..|++.|.+...|..|+++|+++++|.
T Consensus        64 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~-------~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~  136 (190)
T 1tf6_A           64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN-------IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE  136 (190)
T ss_dssp             HTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSS-------TTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSB
T ss_pred             HHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcC-------CCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCcc
Confidence            3567777778887  688888887778888744442       35678888  789999999999999998898888898


Q ss_pred             HHH--HHHhhhcccceeeec
Q psy9958          77 EQQ--VALKLGRQKKVHIID   94 (181)
Q Consensus        77 ~~~--~~~~~~~~~~~~~~~   94 (181)
                      |..  |+..|.....+..|.
T Consensus       137 C~~~~C~k~F~~~~~L~~H~  156 (190)
T 1tf6_A          137 CPHEGCDKRFSLPSRLKRHE  156 (190)
T ss_dssp             CCSSSCCCBCSSHHHHHHHH
T ss_pred             CCCCCCCchhcCHHHHHHHH
Confidence            876  888876665444433

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.49  E-value=6.5e-16  Score=100.47  Aligned_cols=61  Identities=30%  Similarity=0.620  Sum_probs=56.6

Q ss_pred             CcccCCCCceecc--cchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958           1 MLIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         1 ~~~Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      |++|++++||.|.  .|++.|.....|..|++.|         .++++|.|..|++.|...+.|..|+++|.
T Consensus        27 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           27 LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH---------TGHRPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             HTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHH---------HCCCCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             HHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHc---------CCCCCccCCCCCcccCCHHHHHHHHHhhC
Confidence            4679999999997  5999999999999999998         57899999999999999999999999883

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.48  E-value=2.2e-14  Score=89.82  Aligned_cols=58  Identities=28%  Similarity=0.517  Sum_probs=53.5

Q ss_pred             ccCCCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhc
Q psy9958           3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus         3 ~Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h   69 (181)
                      .++..++|.|.+  |++.|.....|..|+++|         .++++|.|.+  |++.|.....|.+|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH---------TGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHH---------SSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhc---------CCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            467789999999  999999999999999998         6789999975  999999999999999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.9e-14  Score=80.75  Aligned_cols=43  Identities=21%  Similarity=0.331  Sum_probs=40.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH---------AEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHH---------TSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.47  E-value=3.2e-14  Score=84.38  Aligned_cols=49  Identities=22%  Similarity=0.477  Sum_probs=44.6

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHH-HhcCCCCCCCCCCCCcccCCcccccCCCc
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVN-LYHNPHYVPPSPKEKTHKCPECKKAFRHK   59 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~-~hh~~~~~~~~~~~~~~~C~~C~k~F~~~   59 (181)
                      ..|++++||.|.+|++.|.....|.+|++ +|         ++++||.|..|++.|.+.
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H---------~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH---------TSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTS---------CCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhc---------CCCCCccCCCCCCCCCCC
Confidence            36899999999999999999999999997 66         688999999999999863

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.47  E-value=3e-14  Score=81.49  Aligned_cols=43  Identities=21%  Similarity=0.345  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|.+|+++|         ++++||.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHH---------SCCSSCSCCCC
T ss_pred             CCCCCCCCCcccCccCcccCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=3.5e-14  Score=81.10  Aligned_cols=43  Identities=21%  Similarity=0.303  Sum_probs=40.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2emm_A            4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESSHHHHHHHHHHH---------SCCCTTSSSCC
T ss_pred             cCCcCCCCCeeCCCCChhhCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.9e-16  Score=99.23  Aligned_cols=63  Identities=21%  Similarity=0.358  Sum_probs=57.6

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |++|++++||.|.+|++.|.....|..                +++|.|..|++.|...+.|..|+++|+++++|.|..
T Consensus        10 ~~~h~~~~~~~C~~C~k~f~~~~~l~~----------------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~   72 (73)
T 2ctu_A           10 QKIHLGDRSQKCSKCGIIFIRRSTLSR----------------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSS   72 (73)
T ss_dssp             CCCCCCCSEEECSSSCCEEECCCCCCC----------------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCC
T ss_pred             HHHhCCCCCeeCCcccchhCCHHHhCc----------------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCC
Confidence            578999999999999999999888765                379999999999999999999999999999998754

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.1e-14  Score=80.88  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=40.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2emy_A            4 GSSGTGENPYECHECGKAFSRKYQLISHQRTH---------AGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHH---------TTSCCSCSSCC
T ss_pred             CCCCCCCcCcCCCCCCcccCcHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68899999999999999999999999999998         67899999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3.6e-14  Score=81.05  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLH---------SGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHC---------CSSSCCCCCCC
T ss_pred             cccCCCCCCeECCCCCCccCchHHHHHHHHhc---------CCCCCCCCCCC
Confidence            68899999999999999999999999999998         67899999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=3.9e-14  Score=80.94  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCSEECSSSCCEESCHHHHHHHGGGG---------TTCCCSSTTCC
T ss_pred             CCCCCCCcCccCCCccchhCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.1e-14  Score=80.89  Aligned_cols=43  Identities=21%  Similarity=0.360  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2eml_A            4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH---------SGKKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHGGG---------SSCCCSCSSCC
T ss_pred             cCCcCCCCCeeCCCcCCccCCHHHHHHHHHHh---------cCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.8e-14  Score=80.57  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=40.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|..|+++|         ++++||.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2ytd_A            4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH---------TGYRPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSHHHHHHHHHHH---------TCCCSSCSSCC
T ss_pred             ccccCCCcCeECCCCCCeeCChHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3.4e-14  Score=81.27  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~c   46 (46)
T 2emf_A            4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSSSCCEECSSSCCEESCHHHHHHHGGGT---------SCSSCSCCCCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.46  E-value=4.2e-14  Score=80.88  Aligned_cols=43  Identities=23%  Similarity=0.369  Sum_probs=40.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|++|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHH---------SSCCCSSCCCC
T ss_pred             CCccCCCCceECCCCCchhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.5e-14  Score=94.10  Aligned_cols=63  Identities=25%  Similarity=0.402  Sum_probs=55.9

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCc--------ccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKT--------HKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~--------~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ..|.|..|++.|.....|..|++.+|        .+.++        |.|..|++.|..+..|..|+++|+++++|.|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H--------~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEH--------VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTT--------TCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhc--------cCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34779999999999999999999833        45666        99999999999999999999999999998763

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.46  E-value=8.3e-15  Score=98.77  Aligned_cols=63  Identities=22%  Similarity=0.437  Sum_probs=56.7

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHH-hcCCCChhH
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMT-LHDPDSELI   76 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~-~h~~~~~~~   76 (181)
                      ++|  .+||.|.+|++.|.....|..|++ |         .++++|.|..|++.|.+...|..|++ +|.++++|.
T Consensus        37 ~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H---------~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~  100 (107)
T 1wjp_A           37 RLC--RNAAVCPYCSLRFFSPELKQEHES-K---------CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAP  100 (107)
T ss_dssp             HHH--HHSBCCTTTCCCBSSHHHHHHHHH-H---------CSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCC
T ss_pred             HHC--CCCccCCCCCCccCCHHHHHHHHH-c---------CCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCC
Confidence            445  479999999999999999999995 6         67899999999999999999999997 898888774

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.46  E-value=4.5e-14  Score=80.75  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=40.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH---------TREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGG---------CCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3.6e-14  Score=81.14  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSHHHHHHHHTTT---------CCCCCCSCCCC
T ss_pred             ccCCCCCCCeECCCCCchhCChHHHHHHHhhc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999997         67899999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=3.5e-14  Score=81.15  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTT---------TTCCCCSSCCC
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999988         67899999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.5e-14  Score=80.70  Aligned_cols=43  Identities=23%  Similarity=0.388  Sum_probs=40.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|..|+++|         ++++||.|+.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~c   46 (46)
T 2ytk_A            4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSEECSSSCCEESSHHHHHHHHHHH---------SSSSCSSCCCC
T ss_pred             cccCCCCCCEeCCcCCCccCCHHHHHHHHHHH---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=3.8e-14  Score=81.03  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=39.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2ytn_A            4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGT---------SCCCCCSCCCC
T ss_pred             CcCCCCCcCeECCCCCCeeCCHHHHHHHhhhc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.45  E-value=3.9e-14  Score=80.90  Aligned_cols=43  Identities=23%  Similarity=0.245  Sum_probs=40.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2el4_A            4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH---------TGVKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSSCEESSHHHHHHHGGGS---------SSCCCSCCTTC
T ss_pred             ccCCCCCCceECCCCCchhCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5.1e-14  Score=80.48  Aligned_cols=43  Identities=21%  Similarity=0.424  Sum_probs=40.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~c   46 (46)
T 2ytj_A            4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKIH---------TKQKPSGPSSG   46 (46)
T ss_dssp             SCTTSSCCSEECSSSCCEESSHHHHHHHHHHT---------SCCCCSSCSCC
T ss_pred             ccCCCCCcCeECCCCChhhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.45  E-value=3.9e-14  Score=80.97  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=39.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|++|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2em0_A            4 GSSGMGEKTWKCRECDMCFSQASSLRLHQNVH---------VGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGG---------SSSSCSCSSCC
T ss_pred             cCccCCCcCeECCCCCcccCCHHHHHHHHHHc---------CCCCCcCCCCC
Confidence            68899999999999999999999999999998         67899999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=3.6e-14  Score=81.16  Aligned_cols=43  Identities=21%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH---------MGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGG---------GSCCCCCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         57899999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=4.8e-14  Score=80.57  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=40.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH---------SGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHS---------CCSSCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.1e-14  Score=80.80  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIH---------TGVKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSHHHHHHHHGGG---------SCCCSCSSCCC
T ss_pred             CCCCCCCCCeECCCcChhhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4e-14  Score=80.97  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=40.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.++..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH---------SGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTT---------CCSCSSCCCCC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68899999999999999999999999999987         67899999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.45  E-value=4.9e-14  Score=80.49  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.....|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2em9_A            4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVH---------SGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHGGGG---------TSCCCCSTTCC
T ss_pred             CCCCCCCcCeECCccccccCChHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5.5e-14  Score=80.28  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=40.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH---------TGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHH---------SCCSSCCSCCC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhc---------CCCCCCCCCCC
Confidence            68899999999999999999999999999998         67899999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4e-14  Score=80.92  Aligned_cols=43  Identities=21%  Similarity=0.407  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~c   46 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSHHHHHHHHHHH---------HCSSCSSSCCC
T ss_pred             CCCCCCCCCcCCCCCCchhCCHHHHHHHHHhc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         57899999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5e-14  Score=80.50  Aligned_cols=43  Identities=28%  Similarity=0.414  Sum_probs=40.6

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTH---------TGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHH---------SSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.2e-14  Score=80.88  Aligned_cols=43  Identities=19%  Similarity=0.289  Sum_probs=40.6

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH---------TGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHH---------HCCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHH---------cCCCCCCCCCC
Confidence            68999999999999999999999999999998         57899999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.3e-14  Score=80.77  Aligned_cols=43  Identities=21%  Similarity=0.344  Sum_probs=40.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.....|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2emp_A            4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESCHHHHHHHHHHH---------HCCSCCSCCCC
T ss_pred             ccccCCCcCeECCCCCchhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         57899999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=5.8e-14  Score=80.22  Aligned_cols=43  Identities=19%  Similarity=0.125  Sum_probs=40.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLH---------MGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHH---------SCCSCCCTTCC
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.2e-14  Score=80.87  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2eoo_A            4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRH---------FREKSSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCEECSSSCCEESSHHHHHHHHHHH---------HSTTSSCCSCC
T ss_pred             CCCCCCCCCEEccccCcccCCHHHHHHHHHHH---------cCCCCCCCCCC
Confidence            68999999999999999999999999999998         57899999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.45  E-value=4.4e-14  Score=80.74  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=40.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~c   46 (46)
T 2ema_A            4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSCCEECSSSCCEESSHHHHHHHHTGG---------GCCCCCSSSCC
T ss_pred             ccCCCCCcCcCCCCCcchhCCHHHHHHHHHhc---------CCCCCCCCCCC
Confidence            68899999999999999999999999999998         57899999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5.2e-14  Score=80.42  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=39.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH---------TAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHT---------TCCCSSSCCCC
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5.3e-14  Score=80.38  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=40.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~c   46 (46)
T 2ep2_A            4 GSSGTGEKPYECSICGKSFTKKSQLHVHQQIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSEECSSSCCEESSHHHHHHHHHTT---------SSCCSCCSCCC
T ss_pred             CCCCCCCcCcCCCCCCcccCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            67899999999999999999999999999988         67899999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=4.8e-14  Score=80.60  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~c   46 (46)
T 2eq0_A            4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCEECTTTCCEESSHHHHHHHHTTT---------CCCCCSCCSCC
T ss_pred             CcCCCCCCCeECCCCCchhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999987         67899999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=6.1e-14  Score=80.06  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|++|++.|.....|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSHHHHHHHHGGG---------CCCSCCSSCCC
T ss_pred             CCCCCCCCCeECCCCChhhCCHHHHHHHHHhc---------CCCCCCCCCCC
Confidence            68899999999999999999999999999998         67899999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.1e-14  Score=81.00  Aligned_cols=43  Identities=16%  Similarity=0.306  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.+...|.+|+++|         ++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH---------TGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHH---------HSCCCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         57899999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.6e-14  Score=80.60  Aligned_cols=43  Identities=16%  Similarity=0.223  Sum_probs=39.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2eop_A            4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRIH---------TGENPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTT---------TTSCCSCCCCC
T ss_pred             ccccCCCCCeeCCCCCchhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999987         67899999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=6.2e-14  Score=80.05  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2epw_A            4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH---------VDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSEECSSSCCEESSSHHHHHHHHHC---------CSCCCSCCCCC
T ss_pred             cccCCCCCCeeCCCCCCccCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            67899999999999999999999999999997         67899999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.6e-14  Score=80.64  Aligned_cols=43  Identities=19%  Similarity=0.341  Sum_probs=40.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH---------TGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTS---------CSCCSSCCSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999997         67899999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=5.1e-14  Score=80.52  Aligned_cols=43  Identities=19%  Similarity=0.235  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSHHHHHHHHTTT---------SCSCCSSCCCC
T ss_pred             cCCCCCCCCeECCcCCCccCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999987         67899999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=4.3e-14  Score=80.80  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2yu8_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVH---------TGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECSSSCCEESSSHHHHHHTHHH---------HSCCCSCSCCC
T ss_pred             CcCCCCCCCeECCcCCchhCCHHHHHHHHHhc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         57899999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=5.6e-14  Score=80.24  Aligned_cols=43  Identities=19%  Similarity=0.194  Sum_probs=40.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2en8_A            4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVH---------MGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEECTTTCCEESSHHHHHHHHTTT---------CCSCSSCCSCC
T ss_pred             cccCCCCCCeECCCcCcccCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68899999999999999999999999999988         67899999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=6.6e-14  Score=79.98  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2en1_A            4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH---------TGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCCCSEEETTTTEEESSHHHHHHHGGGG---------SCCCCSCCCCC
T ss_pred             ccCCCCCCCeeCCCCCcccCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.6e-14  Score=80.59  Aligned_cols=43  Identities=26%  Similarity=0.434  Sum_probs=39.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C   46 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTT---------TTCSCCCSCCC
T ss_pred             CcCCCCCcCcCCCCCCCccCCHHHHHHHHHhc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999987         67899999987

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.43  E-value=9.3e-15  Score=104.46  Aligned_cols=83  Identities=20%  Similarity=0.412  Sum_probs=74.0

Q ss_pred             CcccCCCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHH-HhcCCCChh
Q psy9958           1 MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHM-TLHDPDSEL   75 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~-~~h~~~~~~   75 (181)
                      |++|++++||.|.+  |++.|.....|..|++.|         .++++|.|..  |++.|.+...|..|+ ++|.++++|
T Consensus        59 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~  129 (155)
T 2gli_A           59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH---------TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY  129 (155)
T ss_dssp             THHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHT---------TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCE
T ss_pred             HHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHc---------CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCe
Confidence            56789999999986  999999999999999998         5789999998  999999999999998 889999999


Q ss_pred             HHHH--HHHhhhcccceee
Q psy9958          76 IEQQ--VALKLGRQKKVHI   92 (181)
Q Consensus        76 ~~~~--~~~~~~~~~~~~~   92 (181)
                      .|..  |+..|.....+..
T Consensus       130 ~C~~~~C~~~f~~~~~L~~  148 (155)
T 2gli_A          130 VCKLPGCTKRYTDPSSLRK  148 (155)
T ss_dssp             ECCSTTTCCEESSHHHHHH
T ss_pred             eCCCCCCccccCCHHHHHH
Confidence            9987  9988876654443

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=4.7e-14  Score=80.64  Aligned_cols=43  Identities=19%  Similarity=0.373  Sum_probs=40.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2ytg_A            4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECTTTCCEESSSHHHHTTGGGG---------SSCCSSCSCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999998         67899999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=7.6e-14  Score=79.73  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=39.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~~   46 (46)
T 2ep3_A            4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCCCSEECSSSCCEESSHHHHHHHHTTT---------TTSCCCCTTCC
T ss_pred             CCCCCCCCCeECCCCCchhCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999987         67899999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.2e-13  Score=78.92  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=40.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~~   46 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHH---------CCCCSSCSSCC
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         67899999875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.42  E-value=2.7e-15  Score=96.54  Aligned_cols=69  Identities=23%  Similarity=0.455  Sum_probs=58.0

Q ss_pred             ceec--ccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcCCCChhHHHH---HH
Q psy9958           9 PYLC--DHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDSELIEQQ---VA   81 (181)
Q Consensus         9 p~~C--~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~~~~~---~~   81 (181)
                      ||.|  +.|++.|.....|..|++.|         .++++|.|+.  |++.|.....|..|+++|++   |.|..   |+
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h---------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~   68 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSH---------TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCS   68 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH---------HTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHh---------CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCC
Confidence            7899  88999999999999999988         4678999988  99999999999999999888   77777   77


Q ss_pred             Hhhhcccc
Q psy9958          82 LKLGRQKK   89 (181)
Q Consensus        82 ~~~~~~~~   89 (181)
                      ..|.....
T Consensus        69 ~~f~~~~~   76 (85)
T 2j7j_A           69 FVGKTWTL   76 (85)
T ss_dssp             CEESSHHH
T ss_pred             CccCCHHH
Confidence            76655443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=8.2e-14  Score=79.85  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=39.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHH-HhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVN-LYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~-~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|++ +|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H---------~~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH---------TGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTT---------TTSCSSSCCCC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhc---------CCCCCCCCCCC
Confidence            689999999999999999999999999999 77         67899999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=8.5e-14  Score=79.53  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=40.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      +++|++++||.|.+|++.|..+..|..|+++|         ++++||.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH---------TGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTT---------SSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHh---------CCCCCCCCCCC
Confidence            57899999999999999999999999999988         67899999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=4.1e-14  Score=80.94  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=40.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITH---------TREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHH---------HHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            68999999999999999999999999999998         57899999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.41  E-value=1.1e-13  Score=78.69  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=40.6

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCccc
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECK   53 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~   53 (181)
                      .+|++++||.|.+|++.|..+..|..|+++|         +++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H---------~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSH---------DGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHH---------SCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHc---------cCCCCCCCcCCC
Confidence            5799999999999999999999999999998         678999999996

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.40  E-value=1.5e-14  Score=106.95  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=68.1

Q ss_pred             ccc-CCCCceec--ccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc--ccccCCCchhHHHHHHhcCCCChhH
Q psy9958           2 LIH-IDQNPYLC--DHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDSELI   76 (181)
Q Consensus         2 ~~H-t~ekp~~C--~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~~   76 (181)
                      ++| .+.++|.|  ..|++.|.....|..|+++|         ++++||.|+.  |++.|.+.+.|..|+++|++   |.
T Consensus        96 ~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~  163 (190)
T 1tf6_A           96 RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH---------TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YP  163 (190)
T ss_dssp             TTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGG---------SSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CC
T ss_pred             HhcCCCcceeeCCCCCCccccCCHHHHHHHHHHh---------CCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---Cc
Confidence            467 57899999  88999999999999999998         6789999988  99999999999999999998   77


Q ss_pred             HHH---HHHhhhcccceee
Q psy9958          77 EQQ---VALKLGRQKKVHI   92 (181)
Q Consensus        77 ~~~---~~~~~~~~~~~~~   92 (181)
                      |..   |+..|.....+..
T Consensus       164 C~~~~~C~~~f~~~~~l~~  182 (190)
T 1tf6_A          164 CKKDDSCSFVGKTWTLYLK  182 (190)
T ss_dssp             CCSTTTCCCCCSCHHHHHH
T ss_pred             CCCCCcCCCccccHHHHHH
Confidence            777   7777765544433

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.8e-13  Score=77.37  Aligned_cols=42  Identities=26%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHHHHH---------SSSSCCCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHHHhc---------CCCCCCCCCC
Confidence            68899999999999999999999999999998         6789999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.38  E-value=3.4e-13  Score=77.03  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=38.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHH---------TTSCSSSSCC
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            68899999999999999999999999999998         6789999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.38  E-value=3.1e-13  Score=75.53  Aligned_cols=41  Identities=24%  Similarity=0.391  Sum_probs=37.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.++..|.+|+++|         ++++||.|+
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH---------AGESGPSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGG---------CCCCSCCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhc---------CCCCCCCCC
Confidence            68899999999999999999999999999998         678999984

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.38  E-value=1e-13  Score=88.93  Aligned_cols=58  Identities=29%  Similarity=0.505  Sum_probs=53.7

Q ss_pred             CcccCCCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc---ccccCCCchhHHHHHHhcC
Q psy9958           1 MLIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE---CKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~---C~k~F~~~~~l~~H~~~h~   70 (181)
                      |++|++++||.|++  |++.|.....|..|+++|+         +   |.|..   |++.|...+.|..|+++|+
T Consensus        23 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~---------~---~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           23 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA---------G---YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             HHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH---------S---EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             HHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC---------C---CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            36789999999999  9999999999999999984         4   99999   9999999999999999875

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.4e-13  Score=76.40  Aligned_cols=42  Identities=24%  Similarity=0.405  Sum_probs=38.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATH---------SGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHH---------CCCSCSCTTC
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHc---------CCCCCCCCCC
Confidence            57899999999999999999999999999998         6789999874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.8e-13  Score=76.31  Aligned_cols=42  Identities=26%  Similarity=0.394  Sum_probs=38.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H---------~~~~~~~C~~   45 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHHH---------CCCCCCCSCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            67899999999999999999999999999998         6789999974

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.36  E-value=3.2e-13  Score=77.94  Aligned_cols=43  Identities=21%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      .|++++||.|.+|++.|.....|..|+++|         ++++||.|.+|+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSH---------SGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGS---------CSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhc---------CCCCCccCCCCCC
Confidence            588999999999999999999999999998         6789999999986

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.6e-13  Score=77.53  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=37.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.++..|.+|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH---------SGERPSGPSS   45 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTT---------TSCCSCTTSC
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhc---------CCCCCCCCCC
Confidence            67899999999999999999999999999887         6788999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.6e-13  Score=76.88  Aligned_cols=42  Identities=21%  Similarity=0.322  Sum_probs=38.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTT---------SCCCCCSSCC
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            67899999999999999999999999999987         6789999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.3e-13  Score=76.58  Aligned_cols=42  Identities=21%  Similarity=0.326  Sum_probs=38.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2en9_A            4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHH---------TSSCCCSCCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHc---------CCCCCCCCCC
Confidence            67899999999999999999999999999998         6789999874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=4.9e-13  Score=76.26  Aligned_cols=42  Identities=24%  Similarity=0.327  Sum_probs=38.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2emi_A            4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIH---------RGEKPSGPSS   45 (46)
T ss_dssp             CCSCSSCCCEECSSSCCEESSHHHHHHHHGGG---------CSCCCCSCCC
T ss_pred             CcccCCCCCCCCCCCCcccCCHHHHHHHHhHh---------CCCCCCCCCC
Confidence            68899999999999999999999999999998         6789999863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.36  E-value=8.3e-14  Score=85.03  Aligned_cols=52  Identities=15%  Similarity=0.351  Sum_probs=45.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHH
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLR   64 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~   64 (181)
                      |++|++++||.|+.|++.|.....|.   ++|         ++++||.|..|++.|....++..
T Consensus         6 ~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H---------~~~k~~~C~~C~k~f~~~~~~~~   57 (62)
T 1vd4_A            6 ERDSTNRASFKCPVCSSTFTDLEANQ---LFD---------PMTGTFRCTFCHTEVEEDESAMP   57 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHHH---HEE---------TTTTEEBCSSSCCBCEECTTCSC
T ss_pred             HHHcCCCCCccCCCCCchhccHHHhH---hhc---------CCCCCEECCCCCCccccCccccc
Confidence            57899999999999999999988886   666         68899999999999998877643

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=4.7e-13  Score=76.45  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHH---------SSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHh---------CCCCCCCCCC
Confidence            68899999999999999999999999999998         6789999963

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.8e-13  Score=76.74  Aligned_cols=42  Identities=26%  Similarity=0.449  Sum_probs=36.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2enf_A            4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTT---------TTSSCCCCSC
T ss_pred             CcCCCCCcCeECCCCCcccCCHHHHHHHHHhh---------CCCCCCCCCC
Confidence            57899999999999999999999999999887         6788999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.5e-13  Score=76.37  Aligned_cols=42  Identities=29%  Similarity=0.520  Sum_probs=37.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~p~~C~~   45 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIH---------TGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGT---------SSCCSSCCCC
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhc---------CCCCCcCCCC
Confidence            67899999999999999999999999999987         6789999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.6e-13  Score=76.43  Aligned_cols=41  Identities=24%  Similarity=0.388  Sum_probs=36.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.....|.+|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~   44 (46)
T 2eoh_A            4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVH---------TGERSSGPS   44 (46)
T ss_dssp             CCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHC---------SSCCSCSTT
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHh---------CCCCCCCCC
Confidence            67899999999999999999999999999887         678899886

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5e-13  Score=76.17  Aligned_cols=42  Identities=21%  Similarity=0.327  Sum_probs=37.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRTH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHHHTS---------CSSSSSCCCC
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            57899999999999999999999999999987         6789999864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5.5e-13  Score=74.44  Aligned_cols=41  Identities=20%  Similarity=0.379  Sum_probs=36.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMH---------TVKSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHT---------SCCSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHh---------CCCCCCCCC
Confidence            67899999999999999999999999999987         678899873

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.4e-13  Score=76.41  Aligned_cols=42  Identities=21%  Similarity=0.415  Sum_probs=38.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|++
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~kp~~C~~   45 (46)
T 2eor_A            4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH---------TGEKPSGPSS   45 (46)
T ss_dssp             SSSSSCCCSEECTTTCCEESSHHHHHHHHHHH---------HSCCCSSSTT
T ss_pred             CcCcCCCcCccCCCCCCCcCCHHHHHHHHHhc---------CCCCCCCCCC
Confidence            67899999999999999999999999999998         5789999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=5.9e-13  Score=75.97  Aligned_cols=42  Identities=19%  Similarity=0.378  Sum_probs=38.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~   45 (46)
T 2eoz_A            4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH---------TQETLSGPSS   45 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESSHHHHHHHHHHH---------SSCCSSSCCC
T ss_pred             cccCCCCCCeECcccChhhCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            67899999999999999999999999999998         6789999863

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=4.6e-13  Score=76.40  Aligned_cols=42  Identities=21%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~   45 (46)
T 2emg_A            4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIH---------TGERPSGPSS   45 (46)
T ss_dssp             CCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTT---------SCCCCSCSCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            57899999999999999999999999999887         6789999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.9e-13  Score=76.28  Aligned_cols=42  Identities=26%  Similarity=0.434  Sum_probs=36.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2eq2_A            4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGG---------CCCCCCCCCC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHc---------CCCCCCCCCC
Confidence            57899999999999999999999999999887         6788998864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=6.5e-13  Score=75.80  Aligned_cols=41  Identities=22%  Similarity=0.359  Sum_probs=37.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~   44 (46)
T 2yto_A            4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH---------TGERHSGPS   44 (46)
T ss_dssp             CCCCCSCCCEECSSSCCEESSHHHHHHHHHHH---------TCCCBTTTB
T ss_pred             ccccCCCCCEECcccCCccCCHhHHHHHHHHc---------CCCCCCCCC
Confidence            67899999999999999999999999999998         678999986

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.4e-13  Score=76.02  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=36.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2ep1_A            4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH---------TGENPSGPSS   45 (46)
T ss_dssp             CCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGG---------SSSCCCSSSC
T ss_pred             ccCCCCCCCcCCCCCCchhCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            57899999999999999999999999999887         6788999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.5e-13  Score=76.00  Aligned_cols=42  Identities=26%  Similarity=0.432  Sum_probs=37.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTT---------SSCCSSCSCC
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHc---------CCCCCCCCCC
Confidence            67899999999999999999999999999987         6789999863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4.4e-13  Score=76.47  Aligned_cols=42  Identities=26%  Similarity=0.459  Sum_probs=35.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|.+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2yti_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTT---------SCSCCSSTTC
T ss_pred             CcCCCCCcCeECCCCCcccCChhHHHHHhHhc---------CCCCCCCCCC
Confidence            57888999999999999999999999998887         5788888863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=4e-13  Score=75.84  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~   44 (44)
T 2eoj_A            4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTH---------SGQSGPSSG   44 (44)
T ss_dssp             CCSSSSCCSCEETTTTEECSSHHHHHHHHTTS---------SSSCSCCCC
T ss_pred             ccccCCCcCeeCCCCCCccCCHHHHHHHHHHc---------CCCCCCCCC
Confidence            67899999999999999999999999999887         678899884

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=7.2e-13  Score=74.72  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=36.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~   44 (44)
T 2eof_A            4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTH---------TGESGPSSG   44 (44)
T ss_dssp             SSCCSCCCSEECTTTCCEESCHHHHHHHHHHT---------TTSSCSCCC
T ss_pred             ccCCCCCCCeECCCCCcccCCHhHHHHHHHHh---------CCCCCCCCC
Confidence            57899999999999999999999999999987         678899884

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=5.3e-13  Score=76.12  Aligned_cols=42  Identities=24%  Similarity=0.418  Sum_probs=36.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2eq1_A            4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH---------TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTT---------CCSCCSSCCC
T ss_pred             ccccCCCCCeECCcCChhhCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            67899999999999999999999999999887         6788999863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=6.6e-13  Score=75.78  Aligned_cols=42  Identities=21%  Similarity=0.399  Sum_probs=36.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2yth_A            4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH---------TGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGG---------TTCCCSSCCC
T ss_pred             ccCCCCCcCCCCCCCCcccCCHHHHHHHHHhc---------CCCCCCCCCC
Confidence            57899999999999999999999999999887         6788998863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.6e-13  Score=76.08  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=36.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|..+..|.+|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2em6_A            4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH---------TGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTT---------SSSCCCCTTC
T ss_pred             ccccCCCCCeECCCCCcccCCHHHHHHHHHHc---------CCCCCCCCCC
Confidence            57899999999999999999999999998887         6788998863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.9e-13  Score=76.00  Aligned_cols=41  Identities=24%  Similarity=0.422  Sum_probs=36.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~   44 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVH---------SGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGS---------CCSCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHh---------CCCCCCCCC
Confidence            67899999999999999999999999999887         678899886

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=7.8e-14  Score=94.97  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=55.1

Q ss_pred             cCCCCcee-cccchhhc--cChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCCh
Q psy9958           4 HIDQNPYL-CDHCDQTF--RQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus         4 Ht~ekp~~-C~~C~k~f--~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      |.+.+++. |.+|++.|  .....|..|+++|         .+++||.|..|++.|.+...|..|+++|+....
T Consensus        44 h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H---------~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           44 HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE---------DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             CCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSC---------CCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             ccccCCCccCCCCCcccccccHHHHHHHhhcc---------CCCcceECCCCCCccCCHHHHHHHHHHhCCccc
Confidence            67777655 99999999  8999999999987         678999999999999999999999999876543

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=6.3e-13  Score=75.87  Aligned_cols=42  Identities=17%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCC-CCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPK-EKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~-~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++ ++||.|..
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~~C~~   46 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIH---------TRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTC---------CSCCTTSSSCC
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHc---------CCCCCCCCCCC
Confidence            67899999999999999999999999999887         67 88999863

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=8.8e-13  Score=74.46  Aligned_cols=41  Identities=22%  Similarity=0.450  Sum_probs=35.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~   44 (44)
T 2yu5_A            4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTH---------ARKSGPSSG   44 (44)
T ss_dssp             SCCCSCCCSEECSSSSCEESSSHHHHHHHHHC---------CCCCSSCCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHhHhc---------CCCCCCCCC
Confidence            57899999999999999999999999999887         678888874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.33  E-value=8.8e-13  Score=73.59  Aligned_cols=40  Identities=23%  Similarity=0.407  Sum_probs=35.6

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      +++|++++||.|.+|++.|..+..|..|+++|         ++++||.|
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H---------~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC---------SQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSHHHHHHHHHHT---------TCCCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCHHHHHHHhhhc---------CCCCCCCC
Confidence            57899999999999999999999999999987         67889887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=9.8e-13  Score=74.26  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=36.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|..|++.|.....|..|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~   44 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTH---------AAKSGPSSG   44 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGG---------CCCCCTTCC
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHc---------CCCCCcCCC
Confidence            57899999999999999999999999999887         678899884

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=5.9e-13  Score=74.38  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=35.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      |++|++++||.|..|++.|.....|..|+++|         ++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIH---------TGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHH---------HSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHc---------CCCCCCCC
Confidence            57899999999999999999999999999988         57889887

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=6.3e-13  Score=74.95  Aligned_cols=41  Identities=24%  Similarity=0.425  Sum_probs=34.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~   44 (44)
T 2en7_A            4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH---------TGESGPSSG   44 (44)
T ss_dssp             CCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTT---------CCSSSSCCC
T ss_pred             CcCCCCCcCeECCCCCCccCCHHHHHHHhhhc---------CCCCCCCCC
Confidence            57888888888888888888888888888887         577888874

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8.5e-13  Score=74.94  Aligned_cols=42  Identities=29%  Similarity=0.472  Sum_probs=37.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      +++|++++||.|.+|++.|..+..|..|+++|         ++++||.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH---------TGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTT---------SSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHh---------CCCCCCCCCC
Confidence            46899999999999999999999999999988         6789999963

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=6e-13  Score=75.94  Aligned_cols=42  Identities=21%  Similarity=0.452  Sum_probs=37.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|+.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   45 (46)
T 2emz_A            4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLH---------SREKSSGPSS   45 (46)
T ss_dssp             CSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHH---------HHTTCCCSCC
T ss_pred             CcCCCCCCCeECCCCCcccCCHHHHHHHHHHh---------CCCCCCCCCC
Confidence            68899999999999999999999999999998         5789999863

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=7.3e-13  Score=74.05  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=32.7

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|         ++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH---------TGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTT---------SCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhc---------CCCCCCCC
Confidence            57788888888888888888888888888877         56788876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=6.4e-13  Score=84.33  Aligned_cols=46  Identities=26%  Similarity=0.497  Sum_probs=43.4

Q ss_pred             ccCCCCceeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCC
Q psy9958           3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFR   57 (181)
Q Consensus         3 ~Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~   57 (181)
                      +|++++||.|.+  |++.|..+..|..|+++|         ++++||.|..|+++|.
T Consensus        32 ~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           32 QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH---------SDTRDYICEFSGPSSG   79 (79)
T ss_dssp             GGGSCCCEECSCTTTCCEESSHHHHHHHHHHH---------HTSCCCSCCSSSCCCC
T ss_pred             HhCCCCCeECCCCCCcCccCCHHHHHHHHHHh---------CCCCCeeCCCCCCCCC
Confidence            699999999999  999999999999999998         5789999999999984

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=74.00  Aligned_cols=41  Identities=22%  Similarity=0.307  Sum_probs=36.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      +++|++++||.|.+|++.|.....|..|+++|         ++++||.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALH---------AGESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHH---------TTSCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHH---------CCCCCCCCC
Confidence            57899999999999999999999999999988         678899884

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.5e-12  Score=73.30  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=37.1

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      ++|++++||.|..|++.|..+..|..|+++|         ++++||.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQT---------HSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHH---------TCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhh---------CCCCCccCCC
Confidence            6899999999999999999999999999998         6789999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=6.9e-13  Score=74.05  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=32.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH---------TGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGT---------SCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHh---------CCCCCCCC
Confidence            56788888888888888888888888888877         56788876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.30  E-value=2.7e-14  Score=92.94  Aligned_cols=60  Identities=18%  Similarity=0.346  Sum_probs=55.0

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      |++|++++||.|..|++.|.....|..|++.||          ..+|.|..|++.|.....|..|++.++
T Consensus        23 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~----------~~~~~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           23 IRTHTGEKPFACDICGRKFARSDERKRHRDIQH----------ILPILEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC----------CCcchHHHHHHHHHHHhhhHHHHHHHH
Confidence            367999999999999999999999999999985          389999999999999999999988654

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9.9e-13  Score=74.92  Aligned_cols=41  Identities=20%  Similarity=0.397  Sum_probs=36.8

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~   44 (46)
T 2eq3_A            4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH---------TGKKPSGPS   44 (46)
T ss_dssp             CCSSCCCCSSEETTTTEECSSHHHHHHHHTTS---------CCCCCCCSC
T ss_pred             ccCCCCCCCeECCCCChhhCCHHHHHHHHHHh---------CCCCCCCCC
Confidence            57899999999999999999999999999887         678999986

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.4e-13  Score=75.27  Aligned_cols=41  Identities=15%  Similarity=0.273  Sum_probs=37.2

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~~~~~C~   44 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH---------ERTDPSGPS   44 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSSHHHHHHHHHH---------HHSCCSSCS
T ss_pred             ccccCCCCCeeCcccChhhCCHHHHHHHHHHh---------CCCCCCCCC
Confidence            57899999999999999999999999999998         578999986

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1e-12  Score=74.18  Aligned_cols=41  Identities=20%  Similarity=0.377  Sum_probs=36.5

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H---------~~~~~~~C~   44 (44)
T 2eox_A            4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH---------TRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCEEETTTTEEESSSHHHHTTHHHH---------CCCCCCSCC
T ss_pred             CcCCCCCCCeECcccCcccCCHHHHHHHHHHh---------CCCCCCCCC
Confidence            67899999999999999999999999999998         678899873

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.6e-12  Score=74.62  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=39.6

Q ss_pred             CcccCCCCceecc--cchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcc
Q psy9958           1 MLIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPEC   52 (181)
Q Consensus         1 ~~~Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C   52 (181)
                      .++|++++||.|.  .|++.|..+..|..|+++|         ++++||.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH---------SGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTS---------CCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHh---------CCCCCCCCCCC
Confidence            4789999999998  8999999999999999987         68899999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.6e-12  Score=72.21  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=34.8

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      ++|++++||.|.+|++.|.....|..|+++|         ++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH---------TGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGC---------CCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHh---------CCCCCcCC
Confidence            6899999999999999999999999999887         67888887

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.2e-12  Score=72.89  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H---------~~~k~~~~   43 (44)
T 2epv_A            4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTH---------AGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCSEECSSSCCEESSHHHHHHHHGGG---------SSCSCCCC
T ss_pred             CcccCCCcCeECCCCCcccCchHHHHHHHhHh---------cCCCCCCC
Confidence            57899999999999999999999999999887         57888876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.25  E-value=5.1e-13  Score=79.03  Aligned_cols=51  Identities=20%  Similarity=0.294  Sum_probs=46.7

Q ss_pred             hhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958          16 DQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus        16 ~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      +|.|.....|..|+++|         +++++|.|..|++.|...+.|..|+++|+++++|
T Consensus         3 ~k~~~~~~~l~~h~~~H---------~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRS---------QSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHH---------TSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhc---------CCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            46788899999999998         6789999999999999999999999999998876

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.24  E-value=1e-13  Score=84.27  Aligned_cols=51  Identities=22%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeeec
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIID   94 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~   94 (181)
                      +|||.|..||++|...++|..|+++|.++++|.|..|++.|.....+..|.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~   52 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL   52 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHG
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHh
Confidence            699999999999999999999999999999999999999997776655544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1e-13  Score=92.20  Aligned_cols=69  Identities=13%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             hhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCC-CchhHHHHHHhcCC-CChhHHHHHHHhhhcccceeeec
Q psy9958          17 QTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFR-HKGNLLRHMTLHDP-DSELIEQQVALKLGRQKKVHIID   94 (181)
Q Consensus        17 k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~-~~~~l~~H~~~h~~-~~~~~~~~~~~~~~~~~~~~~~~   94 (181)
                      .++.....+..|++.|         .++++|.|..|++.|. ....|..|+++|++ +++|.|..|++.|.....+..|.
T Consensus         4 ~s~~~~~~~~~h~~~h---------~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~   74 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAI---------HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT   74 (98)
T ss_dssp             CCCCCCCSCSHHHHTT---------TTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHh---------ccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHH
Confidence            3566677788999988         6789999999999999 99999999999999 99999999999987776554443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=66.57  Aligned_cols=33  Identities=24%  Similarity=0.554  Sum_probs=28.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      |++|++++||.|.+|++.|..+..|..|+++|+
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            678999999999999999999999999988873

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=7.3e-12  Score=79.37  Aligned_cols=61  Identities=21%  Similarity=0.339  Sum_probs=54.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +++|.+++|+.|.+|++.|. ...|..|+ .+         .+.+||.|+.|++.|. ...|..|+++|.+.+
T Consensus         9 ~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~---------c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            9 EETECPLRLAVCQHCDLELS-ILKLKEHE-DY---------CGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCCCCCCEECSSSCCEEC-HHHHHHHH-HH---------HHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             CcccCCCcccCCcccChHhh-HHHHHHHH-hH---------cCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            35789999999999999995 89999998 66         5789999999999988 499999999988764

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.15  E-value=2e-12  Score=73.73  Aligned_cols=39  Identities=31%  Similarity=0.469  Sum_probs=36.1

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |++++||.|..|++.|.+++.|.+|+++|.++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-12  Score=74.38  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em0_A            8 MGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence            78999999999999999999999999999999998754

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.14  E-value=1.2e-12  Score=74.64  Aligned_cols=38  Identities=29%  Similarity=0.514  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A            8 TGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-12  Score=73.63  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=36.1

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |++++||.|..|++.|.++++|..|+++|+++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.1e-12  Score=73.49  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|+++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A            8 TGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-12  Score=74.06  Aligned_cols=38  Identities=29%  Similarity=0.437  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A            8 TGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             SSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-12  Score=74.23  Aligned_cols=38  Identities=29%  Similarity=0.560  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eop_A            8 TGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred             CCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-12  Score=74.61  Aligned_cols=38  Identities=29%  Similarity=0.458  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|..++.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            8 TGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             CCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.3e-12  Score=73.43  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+..+|.+|+++|+++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epz_A            8 TGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-12  Score=73.56  Aligned_cols=39  Identities=28%  Similarity=0.545  Sum_probs=36.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            8 TGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            789999999999999999999999999999999987543

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.3e-12  Score=73.37  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=36.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      +++++|.|..|++.|.++++|..|+++|.++++|.|..|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            789999999999999999999999999999999987643

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.4e-12  Score=73.36  Aligned_cols=39  Identities=33%  Similarity=0.490  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |+++++|.|..|++.|.++++|.+|+++|+++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.13  E-value=2.2e-12  Score=73.45  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=36.3

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      ++++||.|..|++.|.+.+.|..|+++|+++++|.|..|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            8 TGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            789999999999999999999999999999999987643

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.6e-12  Score=73.14  Aligned_cols=38  Identities=29%  Similarity=0.457  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|+++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A            8 TGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             SSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.12  E-value=2.7e-13  Score=94.22  Aligned_cols=75  Identities=12%  Similarity=0.151  Sum_probs=61.7

Q ss_pred             CCceecccchhhcc------ChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958           7 QNPYLCDHCDQTFR------QKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus         7 ekp~~C~~C~k~f~------~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      ++++.|++|.+.|.      ....|..|++ |         ++++||.|..|++.|....+|..|+++|  +++|.|..|
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~-h---------~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C  106 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLLA-S---------KAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVC  106 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHHH-H---------HHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTT
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHHH-h---------CCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCC
Confidence            45677888888777      5677777774 5         4689999999999999999999999998  889999999


Q ss_pred             HHhhhcccceeee
Q psy9958          81 ALKLGRQKKVHII   93 (181)
Q Consensus        81 ~~~~~~~~~~~~~   93 (181)
                      +..|.....+..|
T Consensus       107 ~k~f~~~~~l~~H  119 (129)
T 2wbt_A          107 KKEFTSTDSALDH  119 (129)
T ss_dssp             CCBCSSHHHHHHH
T ss_pred             CcccCCHHHHHHH
Confidence            9988776554443

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-12  Score=73.93  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emf_A            8 TGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            78999999999999999999999999999999998753

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=2.5e-12  Score=84.10  Aligned_cols=58  Identities=21%  Similarity=0.415  Sum_probs=45.4

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      ++|++++||.|.+|++.|.....|..|+++|         ++++||.|..|.    +...|..|.++|.+.
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~H---------t~ekp~~C~~~~----~~~~~~~~~~~~~~~   75 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIH---------NEEFQKRAKRQE----RRKQLLSKQKYADGA   75 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHH---------HHHHHHHCCCCS----CCCCCCCCCCCCCCS
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHh---------CCCCCcccchhh----hHHHHHhhhcccccc
Confidence            5688888999999999999888899998887         567888886543    456667777777663

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.12  E-value=1.3e-12  Score=74.42  Aligned_cols=38  Identities=29%  Similarity=0.484  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ema_A            8 TGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             TTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred             CCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.5e-12  Score=73.28  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.8e-12  Score=73.07  Aligned_cols=38  Identities=32%  Similarity=0.537  Sum_probs=35.5

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++|.|..|++.|.+.++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            8 TGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             CCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998753

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.7e-12  Score=73.21  Aligned_cols=39  Identities=33%  Similarity=0.460  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.6e-12  Score=73.10  Aligned_cols=38  Identities=34%  Similarity=0.540  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A            8 TGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.11  E-value=3e-12  Score=72.87  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=36.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      ++++||.|..|++.|.+.+.|..|+++|.++++|.|..|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            8 TGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            789999999999999999999999999999999987643

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=9e-12  Score=69.36  Aligned_cols=37  Identities=32%  Similarity=0.580  Sum_probs=34.5

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      |++++||.|..|++.|.+++.|.+|+++|.++++|.|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3789999999999999999999999999999998865

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2e-12  Score=73.67  Aligned_cols=38  Identities=37%  Similarity=0.584  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A            8 TGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             CCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.6e-12  Score=73.18  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|+++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            8 TGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.4e-12  Score=73.26  Aligned_cols=38  Identities=29%  Similarity=0.442  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A            8 TGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2e-12  Score=73.67  Aligned_cols=37  Identities=32%  Similarity=0.590  Sum_probs=35.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.++++|.+|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            8 TGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            7899999999999999999999999999999999875

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.2e-12  Score=73.45  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A            8 TGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3e-12  Score=72.89  Aligned_cols=38  Identities=37%  Similarity=0.499  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+.+.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            8 TGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             CCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.5e-12  Score=73.29  Aligned_cols=38  Identities=34%  Similarity=0.556  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            8 TGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             TCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.6e-12  Score=74.14  Aligned_cols=38  Identities=26%  Similarity=0.527  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++|.|..|++.|.+.++|..|+++|.++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            8 SSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.5e-12  Score=72.59  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|...+.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A            8 SGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.10  E-value=4.1e-11  Score=65.66  Aligned_cols=37  Identities=24%  Similarity=0.532  Sum_probs=27.0

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      |++++||.|.+|++.|.....|..|+++|         ++++||.|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVH---------RRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTT---------CCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHc---------CCCcccee
Confidence            66777778877888777777777777776         56677765

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.10  E-value=7.4e-12  Score=69.77  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=34.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      +++++|.|..|++.|.+.++|..|+++|.++++|.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            789999999999999999999999999999999865

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.7e-12  Score=73.86  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|...+.|..|+++|+++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            8 SGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             CCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.3e-12  Score=74.42  Aligned_cols=38  Identities=26%  Similarity=0.512  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            8 TGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3e-12  Score=72.92  Aligned_cols=38  Identities=32%  Similarity=0.440  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytd_A            8 SGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred             CCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.3e-11  Score=70.23  Aligned_cols=38  Identities=26%  Similarity=0.493  Sum_probs=35.3

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      |++++||.|..|++.|.+.++|.+|+++|+++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            37899999999999999999999999999999998774

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.2e-12  Score=70.37  Aligned_cols=36  Identities=33%  Similarity=0.620  Sum_probs=34.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      ++++||.|..|++.|...++|..|+++|.++++|.|
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            7 GGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            789999999999999999999999999999998864

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.7e-12  Score=73.12  Aligned_cols=38  Identities=29%  Similarity=0.493  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++|.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            8 SGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.8e-12  Score=72.48  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |++++||.|..|++.|.+.+.|..|+++|.++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-11  Score=69.02  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=34.4

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      +++++||.|..|++.|.+.++|..|+++|.++++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            3789999999999999999999999999999998864

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.1e-12  Score=72.31  Aligned_cols=40  Identities=28%  Similarity=0.453  Sum_probs=36.5

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      |++++||.|..|++.|...+.|..|+++|.++++|.|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3789999999999999999999999999999999987543

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.6e-12  Score=73.20  Aligned_cols=38  Identities=26%  Similarity=0.485  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytg_A            8 TGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=8.6e-12  Score=71.02  Aligned_cols=37  Identities=32%  Similarity=0.468  Sum_probs=35.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            8 TGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            7899999999999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=9.6e-12  Score=70.70  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=35.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.++++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            8 TGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             SSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             CCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998774

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.5e-12  Score=73.26  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+.+.|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A            8 TGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             CCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.3e-12  Score=73.46  Aligned_cols=38  Identities=24%  Similarity=0.435  Sum_probs=35.5

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      ++++||.|..|++.|.+.++|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoo_A            8 SGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS   45 (46)
T ss_dssp             SCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred             CCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            78999999999999999999999999999999997754

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1e-11  Score=70.70  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=34.8

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+.++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            8 SGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3e-12  Score=73.03  Aligned_cols=39  Identities=31%  Similarity=0.427  Sum_probs=35.9

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++||.|..|++.|.+++.|.+|+++|.++++|.|..
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS   45 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=8.9e-12  Score=70.20  Aligned_cols=36  Identities=25%  Similarity=0.529  Sum_probs=34.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      ++++||.|..|++.|....+|..|+++|.++++|.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            8 AGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             SCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            789999999999999999999999999999998865

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.5e-11  Score=70.03  Aligned_cols=37  Identities=32%  Similarity=0.532  Sum_probs=35.1

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.++..|.+|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            8 TGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            7899999999999999999999999999999999874

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.4e-12  Score=73.30  Aligned_cols=39  Identities=31%  Similarity=0.483  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.08  E-value=4.4e-12  Score=72.25  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=35.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++|.|..|++.|.++.+|..|+++|.++++|.|..
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2el6_A            8 AGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS   45 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.3e-11  Score=70.20  Aligned_cols=37  Identities=32%  Similarity=0.555  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.+.+.|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            8 TGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            7899999999999999999999999999999998764

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.5e-11  Score=69.97  Aligned_cols=37  Identities=32%  Similarity=0.528  Sum_probs=35.1

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.++++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            8 TGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            7899999999999999999999999999999999774

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.6e-12  Score=72.56  Aligned_cols=38  Identities=29%  Similarity=0.486  Sum_probs=35.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++|.|..|++.|.+.++|..|+++|.++++|.|..
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en1_A            8 SGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            78999999999999999999999999999999998754

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.5e-11  Score=69.90  Aligned_cols=37  Identities=30%  Similarity=0.489  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.++++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            8 TGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.8e-12  Score=73.07  Aligned_cols=39  Identities=28%  Similarity=0.390  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      +++++||.|..|++.|.++++|..|+++|.++++|.|..
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS   45 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.4e-11  Score=69.27  Aligned_cols=36  Identities=36%  Similarity=0.493  Sum_probs=34.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      +++++|.|..|++.|.....|..|+++|.++++|.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            8 TGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            789999999999999999999999999999999875

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.5e-11  Score=69.89  Aligned_cols=37  Identities=32%  Similarity=0.550  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.++.+|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            8 TGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998764

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.8e-11  Score=69.69  Aligned_cols=37  Identities=27%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+.++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            8 MGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            7899999999999999999999999999999999774

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.06  E-value=1.2e-11  Score=70.36  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.++.+|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            8 TGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998764

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.2e-12  Score=71.79  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=35.9

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHH-hcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMT-LHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~-~h~~~~~~~~~~   79 (181)
                      |++++||.|..|++.|...+.|..|++ +|.++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            378999999999999999999999999 999999998754

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.6e-11  Score=69.81  Aligned_cols=37  Identities=38%  Similarity=0.567  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.+...|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            8 TGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.3e-11  Score=70.20  Aligned_cols=37  Identities=30%  Similarity=0.476  Sum_probs=34.8

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.+.+.|..|+++|.++++|.|.
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            8 TGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             SSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.4e-11  Score=69.95  Aligned_cols=37  Identities=35%  Similarity=0.514  Sum_probs=35.1

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+++.|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            8 TGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            7899999999999999999999999999999999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.3e-11  Score=70.30  Aligned_cols=37  Identities=30%  Similarity=0.533  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            8 TGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.5e-12  Score=72.63  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=36.1

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |+++++|.|..|++.|.+.++|..|+++|.++++|.|..
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-11  Score=70.37  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=35.2

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      |++++||.|..|++.|.+.+.|..|+++|.++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            37899999999999999999999999999999998763

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.5e-11  Score=69.08  Aligned_cols=36  Identities=39%  Similarity=0.602  Sum_probs=34.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      +++++|.|..|++.|.+.++|..|+++|.++++|.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            8 TGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            789999999999999999999999999999998865

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.05  E-value=3.9e-12  Score=84.44  Aligned_cols=67  Identities=12%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             hhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccC-CCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeee
Q psy9958          17 QTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAF-RHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        17 k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F-~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      ..|.....|..|++.+         .+.++|.|..|++.| ....+|..|+++| ++++|.|..|++.|.....+..|
T Consensus        14 ~~~~~~~~~~~~~~~~---------~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H   81 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEI---------VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYH   81 (96)
T ss_dssp             CSSCTTCHHHHHHHHH---------HHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHH
T ss_pred             CCCCCchHHHHHHHHh---------cCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHH
Confidence            4677888999999988         468999999999999 9999999999999 99999999999998776655444

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.05  E-value=1.5e-11  Score=68.41  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      +++++||.|..|++.|.++++|..|+++|.++++|.|
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            3789999999999999999999999999999998864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.2e-11  Score=69.27  Aligned_cols=38  Identities=29%  Similarity=0.526  Sum_probs=35.2

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      |++++||.|..|++.|.++.+|..|+++|.++++|.|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            37899999999999999999999999999999998763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.6e-11  Score=69.77  Aligned_cols=37  Identities=35%  Similarity=0.574  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+.++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            8 TGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.5e-11  Score=69.85  Aligned_cols=37  Identities=32%  Similarity=0.483  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.++++|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            8 TGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            7899999999999999999999999999999998763

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=7.3e-12  Score=71.31  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+.+.|..|+++|+++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            8 TGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.5e-11  Score=69.98  Aligned_cols=37  Identities=30%  Similarity=0.468  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+.++|..|+++|.++++|.|.
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            8 TGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-11  Score=69.69  Aligned_cols=37  Identities=30%  Similarity=0.476  Sum_probs=34.6

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      |++++||.|..|++.|.++++|..|+++|.++++|.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            3789999999999999999999999999999998875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.2e-11  Score=69.25  Aligned_cols=37  Identities=30%  Similarity=0.502  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.+++.|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            8 AGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.3e-12  Score=72.31  Aligned_cols=39  Identities=26%  Similarity=0.386  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |+++++|.|..|++.|.++.+|..|+++|.++++|.|..
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            378999999999999999999999999999999998754

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.7e-11  Score=69.61  Aligned_cols=37  Identities=35%  Similarity=0.565  Sum_probs=34.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|..+.+|..|+++|.++++|.|.
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            8 TGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=2.4e-11  Score=68.38  Aligned_cols=36  Identities=22%  Similarity=0.482  Sum_probs=34.3

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      ++++||.|..|++.|...++|..|+++|.++++|.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            8 HTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            789999999999999999999999999999999876

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=1.1e-10  Score=72.10  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             cCCCCceeccc--chhhccChhhHHHHH-HHhcCCCCCCCCCCCCcccCC
Q psy9958           4 HIDQNPYLCDH--CDQTFRQKQLLKRHV-NLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         4 Ht~ekp~~C~~--C~k~f~~~~~L~~H~-~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      ++|+|||+|.+  |+|+|.+..+|++|+ ++|         ++++||.|.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriH---------TgEKP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVH---------KSDLPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHS---------SSCCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhC---------CCCCCcccc
Confidence            45566666654  666666666666665 344         455666553

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.03  E-value=6.8e-11  Score=69.67  Aligned_cols=39  Identities=26%  Similarity=0.351  Sum_probs=35.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCccc
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHK   48 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~   48 (181)
                      +++|++++||.|.+|++.|.....|..|+++|         ++++||.
T Consensus        16 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H---------~~~kp~~   54 (54)
T 1yui_A           16 RSRSQSEQPATCPICYAVIRQSRNLRRHLELR---------HFAKPGV   54 (54)
T ss_dssp             HHHHTSSCCEECTTTCCEESSHHHHHHHHHHH---------TTTSCCC
T ss_pred             HHhcCCCCCccCCCCCcccCCHHHHHHHHHHh---------ccCCCCC
Confidence            36799999999999999999999999999998         6778874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.1e-11  Score=69.07  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=34.3

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      +++++||.|..|++.|.+.+.|..|+++|.++++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            3789999999999999999999999999999998864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=62.91  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=28.9

Q ss_pred             CcccCCCCceecccchhhccChhhHHHH-HHHh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRH-VNLY   32 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H-~~~h   32 (181)
                      |++|++++||.|..|++.|..+..|..| ++.|
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            6889999999999999999999999999 7776

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.5e-11  Score=69.07  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=35.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCC-CChhHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDP-DSELIEQ   78 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~-~~~~~~~   78 (181)
                      |++++||.|..|++.|...++|..|+++|.+ +++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3789999999999999999999999999999 9998763

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.4e-11  Score=69.10  Aligned_cols=38  Identities=34%  Similarity=0.565  Sum_probs=35.4

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      |+++++|.|..|++.|.++.+|..|+++|.++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            37899999999999999999999999999999998774

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.7e-11  Score=69.63  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=35.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      +++++|.|..|++.|.+.++|..|+++|.++++|.|.
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            8 TGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            7899999999999999999999999999999999774

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2e-11  Score=69.30  Aligned_cols=37  Identities=27%  Similarity=0.456  Sum_probs=34.8

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|...+.|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            8 TGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999998763

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=8.4e-11  Score=65.07  Aligned_cols=38  Identities=32%  Similarity=0.559  Sum_probs=34.9

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      .|++++||.|..|++.|....+|..|+++|.++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            34789999999999999999999999999999998864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.7e-11  Score=68.27  Aligned_cols=37  Identities=35%  Similarity=0.417  Sum_probs=34.1

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      |++++||.|..|++.|.+.+.|..|+++|+++++|.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            3789999999999999999999999999999988753

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3.3e-11  Score=67.87  Aligned_cols=37  Identities=35%  Similarity=0.623  Sum_probs=34.6

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      ++++++|.|..|++.|....+|..|+++|.++++|.|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            3789999999999999999999999999999999875

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.01  E-value=2e-10  Score=60.97  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +|++++||.|..|++.|.....|..|++.|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h   30 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREV   30 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHH
Confidence            466677777777777777777777777666

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.1e-11  Score=69.37  Aligned_cols=37  Identities=30%  Similarity=0.578  Sum_probs=34.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.+..+|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            8 SGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             SCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999988763

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.00  E-value=2.2e-10  Score=61.00  Aligned_cols=30  Identities=23%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +|++++||.|.+|++.|.....|..|+++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H   30 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHc
Confidence            466777777777777777777777777666

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-11  Score=69.00  Aligned_cols=37  Identities=32%  Similarity=0.491  Sum_probs=34.6

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      |++++||.|..|++.|.+.++|..|+++|.++++|.|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3789999999999999999999999999999998865

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.8e-11  Score=69.55  Aligned_cols=37  Identities=24%  Similarity=0.466  Sum_probs=34.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ++++||.|..|++.|.....|..|+++|.++++|.|.
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            8 TGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7899999999999999999999999999999988763

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.99  E-value=2.2e-10  Score=61.75  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=18.4

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +++|++++||.|+.|++.|.....|..|+++|
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            34555555555555555555555555555554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=1.6e-10  Score=64.69  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      .|+++++|.|..|++.|.++++|..|+++|+++++|.|.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            347899999999999999999999999999999998763

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=2.8e-11  Score=68.53  Aligned_cols=41  Identities=27%  Similarity=0.406  Sum_probs=37.3

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHH
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQV   80 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~   80 (181)
                      .|++++||.|..|++.|.+++.|..|+++|+++++|.|..|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            45889999999999999999999999999999999987654

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.8e-10  Score=65.47  Aligned_cols=39  Identities=23%  Similarity=0.524  Sum_probs=35.7

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      .|+++++|.|..|++.|.++.+|..|+++|+++++|.|.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            347899999999999999999999999999999998763

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=1.7e-10  Score=72.77  Aligned_cols=40  Identities=25%  Similarity=0.470  Sum_probs=37.3

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccC
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC   49 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C   49 (181)
                      |++|++++||.|.+|++.|.....|..|+++|         ++++||.|
T Consensus        38 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H---------~~~~p~~C   77 (77)
T 2cot_A           38 RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH---------TGSGPSSG   77 (77)
T ss_dssp             HTTTCCSCSEECSSSCCEESSHHHHHHHGGGS---------CCCCCCCC
T ss_pred             HHHcCCCcCeeCCCCCCccCCHHHHHHHHHHh---------CCCCCCCC
Confidence            46899999999999999999999999999998         67899988

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.2e-11  Score=68.01  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=36.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |+++++|.|..|++.|.+..+|..|+++|.++++|.|..
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence            478999999999999999999999999999999998754

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3e-11  Score=68.69  Aligned_cols=40  Identities=25%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      .|+++++|.|..|++.|.+..+|..|+++|+++++|.|..
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3478999999999999999999999999999999988754

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.96  E-value=2e-11  Score=79.23  Aligned_cols=53  Identities=21%  Similarity=0.323  Sum_probs=47.6

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeee
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      +...++|.|++|++.|.++.+|.+|+++|+++++|.|..|++.|.+...+..|
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H   75 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH   75 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHH
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHh
Confidence            35678999999999999999999999999999999999999999877665554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=5.8e-11  Score=70.04  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=42.1

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHH-hcCCCChhHHHHHHHhhhc
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMT-LHDPDSELIEQQVALKLGR   86 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~-~h~~~~~~~~~~~~~~~~~   86 (181)
                      .+++++||.|..|++.|.....|.+|++ +|.++++|.|..|+..|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3478999999999999999999999997 8999999999999877643

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.6e-10  Score=65.33  Aligned_cols=39  Identities=31%  Similarity=0.608  Sum_probs=35.6

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      .|+++++|.|..|++.|.+..+|..|+++|.++++|.|.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            347899999999999999999999999999999998763

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=4.4e-10  Score=60.59  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             cccCCCCceecccchhhccCh-hhHHHHHHHhc
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQK-QLLKRHVNLYH   33 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~-~~L~~H~~~hh   33 (181)
                      ++|++++||.|..|++.|... ..|..|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            678888888888888888887 88888888773

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.92  E-value=3.7e-12  Score=80.58  Aligned_cols=60  Identities=15%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHH-hcCCC-ChhHHHHHHHhhhcccceeee
Q psy9958          25 LKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMT-LHDPD-SELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        25 L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~-~h~~~-~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      |.+|+++|         ++++||.|..|++.|....+|..|++ .|.+. ++|.|..|+..|.....+..+
T Consensus         3 ~~~H~~~H---------~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H   64 (77)
T 2ct1_A            3 SGSSGRTH---------SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH   64 (77)
T ss_dssp             CCCCCCCC---------SCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHH
T ss_pred             CCcccccc---------CCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHH
Confidence            44566666         78999999999999999999999997 57764 899999999988776554443

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.92  E-value=3.5e-10  Score=61.83  Aligned_cols=36  Identities=28%  Similarity=0.489  Sum_probs=33.7

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~   77 (181)
                      ++++||.|..|++.|.+.++|..|+++|.++++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            678999999999999999999999999999998864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.92  E-value=3.2e-11  Score=74.74  Aligned_cols=54  Identities=17%  Similarity=0.265  Sum_probs=47.3

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeee
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      +++++++|.|..|++.|.....|..|+++|.++++|.|..|+..|.....+..|
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H   56 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH   56 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHH
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHH
Confidence            457899999999999999999999999999999999999999988766544433

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=5.6e-11  Score=68.26  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=38.1

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHH
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVA   81 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~   81 (181)
                      .+.++++|.|..|++.|.....|..|+++|+++++|.|..|+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            347789999999999999999999999999999999887664

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.91  E-value=3.9e-10  Score=60.72  Aligned_cols=31  Identities=26%  Similarity=0.517  Sum_probs=29.1

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      ++++||.|+.|++.|.++..|..|+++|.++
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            7 TGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            7899999999999999999999999999764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.90  E-value=7.9e-10  Score=58.61  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCCh
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      |+++++|.|..|++.|.+.++|..|+++|+++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            3789999999999999999999999999998763

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=8.9e-10  Score=58.96  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=21.4

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      ++|++++||.|.+|++.|.....|..|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            3566777777777777777777777776665

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.89  E-value=3.5e-11  Score=75.05  Aligned_cols=53  Identities=21%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeee
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      |+++++|.|..|++.|.....|..|+++|.++++|.|..|...|.....+..|
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   61 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH   61 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHH
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHH
Confidence            37899999999999999999999999999999999999999888766544433

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.1e-09  Score=58.49  Aligned_cols=31  Identities=23%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      .+|++++||.|.+|++.|.....|..|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            3577777777777777777777777777766

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=4.8e-10  Score=69.25  Aligned_cols=36  Identities=25%  Similarity=0.477  Sum_probs=32.9

Q ss_pred             CCCCcccCCc--ccccCCCchhHHHHH-HhcCCCChhHH
Q psy9958          42 PKEKTHKCPE--CKKAFRHKGNLLRHM-TLHDPDSELIE   77 (181)
Q Consensus        42 ~~~~~~~C~~--C~k~F~~~~~l~~H~-~~h~~~~~~~~   77 (181)
                      +++|||+|..  |+|+|.+.++|.+|+ ++|++++|+.|
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            7899999976  999999999999997 68999999864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.89  E-value=8.3e-10  Score=58.64  Aligned_cols=34  Identities=29%  Similarity=0.526  Sum_probs=31.2

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCCh
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      |++++||.|..|++.|...+.|.+|+++|+++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            4789999999999999999999999999998764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=7.5e-10  Score=59.57  Aligned_cols=35  Identities=20%  Similarity=0.566  Sum_probs=31.8

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCCh
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      .|++++||.|..|++.|.++++|..|+++|+++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            34789999999999999999999999999998764

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.88  E-value=5.7e-11  Score=74.43  Aligned_cols=53  Identities=26%  Similarity=0.471  Sum_probs=46.6

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeee
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      ..+.++|.|..|++.|.....|..|+++|.++++|.|..|++.|.....+..|
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H   64 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH   64 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHH
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHH
Confidence            36789999999999999999999999999999999999999988766544433

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.2e-09  Score=59.87  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=17.5

Q ss_pred             cCCCCceeccc--chhhccChhhHHHHHHHh
Q psy9958           4 HIDQNPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         4 Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |+++|||+|.+  |++.|..+..|++|+++|
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~H   34 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVH   34 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            55566666654  666666666666666655

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=9.3e-10  Score=58.88  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +.|++++||.|.+|++.|.....|..|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            4566666666666666666666666666665

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1e-09  Score=59.44  Aligned_cols=29  Identities=31%  Similarity=0.629  Sum_probs=21.8

Q ss_pred             cCCCCceecc--cchhhccChhhHHHHHHHh
Q psy9958           4 HIDQNPYLCD--HCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         4 Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~h   32 (181)
                      |++++||.|.  .|++.|.....|.+|+++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   31 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHh
Confidence            6677777777  4777777777777777776

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.86  E-value=3.4e-11  Score=71.42  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=40.4

Q ss_pred             CCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhccccee
Q psy9958          43 KEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVH   91 (181)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~   91 (181)
                      +++||.|..|++.|.....|..|+++|+++++|.|..|+..|.....+.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   49 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLR   49 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHH
Confidence            3689999999999999999999999999999999999998876655433

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=3.9e-11  Score=75.89  Aligned_cols=54  Identities=17%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCC---CChhHHHHHHHhhhcccceeeec
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDP---DSELIEQQVALKLGRQKKVHIID   94 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~---~~~~~~~~~~~~~~~~~~~~~~~   94 (181)
                      |++++||.|..|++.|.....|..|+++|++   +++|.|..|++.|.....+..|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~   58 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR   58 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHH
Confidence            4789999999999999999999999999986   89999999999887766554443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.85  E-value=4.3e-10  Score=75.34  Aligned_cols=43  Identities=23%  Similarity=0.471  Sum_probs=38.3

Q ss_pred             cc---CCCCceecccchhhccChhhHHHH-HHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958           3 IH---IDQNPYLCDHCDQTFRQKQLLKRH-VNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus         3 ~H---t~ekp~~C~~C~k~f~~~~~L~~H-~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      +|   ++++||.|..|++.|..+..|..| +++|         ++++||.|.++.+
T Consensus        41 ~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~H---------tgekpy~C~~~~~   87 (102)
T 2ghf_A           41 EHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH---------PGEENFKLTMVKR   87 (102)
T ss_dssp             HCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTS---------TTCCCEEEEECCC
T ss_pred             hCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhc---------CCCCCeeCCcccC
Confidence            48   678999999999999999999999 7887         7899999998543

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.5e-09  Score=59.52  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=29.5

Q ss_pred             CCCCCcccCCc--ccccCCCchhHHHHHHhcCCC
Q psy9958          41 SPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        41 ~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +++++||+|..  |+++|.++++|.+|+++|++.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            47899999986  999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.85  E-value=9.7e-10  Score=63.14  Aligned_cols=30  Identities=23%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHH-Hh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVN-LY   32 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~-~h   32 (181)
                      +|+++|||.|.+|++.|..+..|..|++ +|
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H   31 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSH   31 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSS
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhc
Confidence            4666666666666666666666666666 55

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=4.7e-09  Score=64.62  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=28.6

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHhcC
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHN   34 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~   34 (181)
                      .|+++|||.|..|+|.|..+..|++|+++|+.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            57889999999999999999999999999853

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.84  E-value=1.6e-09  Score=57.06  Aligned_cols=25  Identities=24%  Similarity=0.658  Sum_probs=15.1

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|.+|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H   25 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLH   25 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHh
Confidence            4566666666666666666666655

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.3e-10  Score=64.17  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=35.8

Q ss_pred             CCCCCcccCC--cccccCCCchhHHHHHHhcCCCChhHHHH
Q psy9958          41 SPKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPDSELIEQQ   79 (181)
Q Consensus        41 ~~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~~~~~   79 (181)
                      |+++++|.|.  .|++.|.++..|..|+++|.++++|.|..
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4789999998  89999999999999999999999998754

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=2.3e-10  Score=68.52  Aligned_cols=49  Identities=18%  Similarity=0.301  Sum_probs=44.1

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeee
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      +||.|..|++.|.....|..|+++|+++++|.|..|+..|.....+..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   49 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH   49 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            5899999999999999999999999999999999999988776655554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.9e-09  Score=56.89  Aligned_cols=34  Identities=35%  Similarity=0.569  Sum_probs=30.7

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      ++++++||.|..|++.|...++|..|+++|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            3478999999999999999999999999998753

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=3.7e-09  Score=56.32  Aligned_cols=30  Identities=33%  Similarity=0.514  Sum_probs=16.0

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +|++++||.|.+|++.|..+..|..|+++|
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            355555555555555555555555555554

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.7e-09  Score=56.86  Aligned_cols=34  Identities=41%  Similarity=0.709  Sum_probs=30.9

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +++++++|.|..|++.|.+..+|..|+++|.+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            3478999999999999999999999999998764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.7e-09  Score=56.90  Aligned_cols=34  Identities=32%  Similarity=0.512  Sum_probs=30.8

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      ++++++||.|..|++.|.....|..|+++|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            3478999999999999999999999999998763

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.4e-09  Score=57.19  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      .+++++||.|..|++.|...+.|..|+++|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3478999999999999999999999999998753

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.80  E-value=2.2e-09  Score=56.52  Aligned_cols=31  Identities=39%  Similarity=0.690  Sum_probs=29.3

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      +||.|..|++.|...++|..|+++|.++++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            5899999999999999999999999999876

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=4.2e-09  Score=56.21  Aligned_cols=30  Identities=20%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      .|++++||.|.+|++.|.....|..|+++|
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHh
Confidence            456666666666666666666666666665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.78  E-value=2.4e-11  Score=73.87  Aligned_cols=47  Identities=11%  Similarity=0.202  Sum_probs=41.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhccccee
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVH   91 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~   91 (181)
                      ++++||.|+.|++.|.....|.   ++|.++++|.|..|+..|.......
T Consensus        10 ~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A           10 TNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             CCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            7899999999999999988886   8899999999999998887665443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.1e-09  Score=57.10  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             CCCCCCcccCCcccccCCCc-hhHHHHHHhcCCCC
Q psy9958          40 PSPKEKTHKCPECKKAFRHK-GNLLRHMTLHDPDS   73 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~-~~l~~H~~~h~~~~   73 (181)
                      .|++++||.|..|++.|.+. +.|..|+++|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            34789999999999999999 99999999997753

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.77  E-value=8e-11  Score=71.95  Aligned_cols=50  Identities=20%  Similarity=0.334  Sum_probs=44.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHh-c-CCCChhHHHHHHHhhhccccee
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTL-H-DPDSELIEQQVALKLGRQKKVH   91 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~-h-~~~~~~~~~~~~~~~~~~~~~~   91 (181)
                      ++++||.|..|++.|....+|..|+++ | .+.++|.|..|+..|.....+.
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~   57 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMT   57 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHH
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHH
Confidence            688999999999999999999999998 7 5889999999998887665443

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.76  E-value=3.9e-09  Score=67.41  Aligned_cols=40  Identities=15%  Similarity=0.416  Sum_probs=37.5

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccC
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAF   56 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F   56 (181)
                      +||.|.+|++.|.....|..|+++|         .+.+++.|..|+..|
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h---------~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNC---------AGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHC---------CCCCSCCCCCCCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHc---------cCCCCcccCCCCCCC
Confidence            8999999999999999999999998         578999999999876

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=4.9e-10  Score=73.06  Aligned_cols=58  Identities=17%  Similarity=0.345  Sum_probs=45.1

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeeecCcc
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDGHK   97 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (181)
                      .|++++||.|..|++.|....+|..|+++|.++++|.|..|........+...+.+..
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~~~~~~~~~~~~~~~   76 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADGAF   76 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCCCCCCCCCCCCCCSS
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhHHHHHhhhccccccc
Confidence            3478999999999999999999999999999999999876554444444444444433

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=5.5e-09  Score=55.74  Aligned_cols=33  Identities=27%  Similarity=0.606  Sum_probs=30.2

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +++++||.|..|++.|.....|..|+++|.+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            478899999999999999999999999998763

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.73  E-value=9.4e-11  Score=73.08  Aligned_cols=52  Identities=21%  Similarity=0.488  Sum_probs=45.8

Q ss_pred             CCCCcccCC--cccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeee
Q psy9958          42 PKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHII   93 (181)
Q Consensus        42 ~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~   93 (181)
                      ++.++|.|+  .|++.|.....|..|+++|.+.++|.|..|+..|.....+..+
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   68 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH   68 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHH
Confidence            789999997  5999999999999999999999999999999988766554443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=4e-09  Score=56.99  Aligned_cols=34  Identities=21%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             CCCCcccCC--cccccCCCchhHHHHHHhcCCCChh
Q psy9958          42 PKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus        42 ~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      ++++||.|.  .|++.|.+.++|.+|+++|.++++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            678999999  5999999999999999999998876

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.71  E-value=6.2e-09  Score=56.09  Aligned_cols=30  Identities=13%  Similarity=0.356  Sum_probs=21.3

Q ss_pred             ccCCCCceeccc--chhhccChhhHHHHHHHh
Q psy9958           3 IHIDQNPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         3 ~Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      .|++++||.|.+  |++.|.....|..|+++|
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            467777777764  777777777777777766

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.71  E-value=5.2e-09  Score=59.99  Aligned_cols=35  Identities=23%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHH-hcCCCChh
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMT-LHDPDSEL   75 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~-~h~~~~~~   75 (181)
                      |++++||.|.+|++.|....+|..|++ +|.++..-
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            378999999999999999999999999 99887543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=3.6e-09  Score=69.03  Aligned_cols=40  Identities=20%  Similarity=0.337  Sum_probs=36.6

Q ss_pred             cc-cCCCCc--------eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958           2 LI-HIDQNP--------YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus         2 ~~-Ht~ekp--------~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      ++ |+++++        |.|.+|++.|..+..|..|+++|         ++++||.|.
T Consensus        46 ~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H---------~~~k~~~C~   94 (95)
T 2ej4_A           46 TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH---------TGEKSGPSS   94 (95)
T ss_dssp             HHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHH---------HTCCCCSSC
T ss_pred             HHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhc---------CCCCCCCCC
Confidence            44 899888        99999999999999999999998         678999996

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=8.6e-09  Score=55.50  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             CCCCCcccCCcccccCCCchhHHHH-HHhcCCC
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRH-MTLHDPD   72 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H-~~~h~~~   72 (181)
                      |++++||.|..|++.|..++.|..| +++|.+.
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4789999999999999999999999 8988764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.66  E-value=5.3e-10  Score=66.11  Aligned_cols=47  Identities=13%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceee
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHI   92 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~   92 (181)
                      ||.|..|++.|.....|..|+++|.+.++|.|..|+..|.....+..
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   47 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTK   47 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHH
Confidence            68999999999999999999999999999999999988866554433

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.66  E-value=8.3e-09  Score=58.78  Aligned_cols=31  Identities=32%  Similarity=0.612  Sum_probs=17.9

Q ss_pred             CCCCcccCC--cccccCCCchhHHHHHHhcCCC
Q psy9958          42 PKEKTHKCP--ECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        42 ~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      ++++||.|.  .|++.|.++++|..|+++|.++
T Consensus        14 ~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            455666663  4666666666666666665554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.63  E-value=1.1e-08  Score=55.25  Aligned_cols=26  Identities=19%  Similarity=0.501  Sum_probs=21.5

Q ss_pred             cCCCCceecccchhhccChhhHHHHH
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHV   29 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~   29 (181)
                      ++|+|||.|..|+|+|.++++|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            57788888888888888888888885

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.62  E-value=1.2e-09  Score=57.10  Aligned_cols=29  Identities=24%  Similarity=0.445  Sum_probs=14.9

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCCCh
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPDSE   74 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~~~   74 (181)
                      ||.|..|++.|.+.++|..|+++|.++++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            45555555555555555555555554443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.62  E-value=1.3e-08  Score=54.79  Aligned_cols=33  Identities=27%  Similarity=0.547  Sum_probs=29.6

Q ss_pred             CCCCCcccCCc--ccccCCCchhHHHHHHhcCCCC
Q psy9958          41 SPKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        41 ~~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +++++||.|.+  |++.|..++.|..|+++|.+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            37899999995  9999999999999999998763

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.60  E-value=2e-08  Score=50.81  Aligned_cols=25  Identities=32%  Similarity=0.728  Sum_probs=12.6

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHh
Confidence            4455555555555555555554444

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.59  E-value=2.8e-08  Score=49.93  Aligned_cols=26  Identities=31%  Similarity=0.636  Sum_probs=14.2

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ||.|..|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            45555555555555555555555544

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.59  E-value=1.9e-08  Score=50.59  Aligned_cols=26  Identities=38%  Similarity=0.802  Sum_probs=12.9

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ||.|..|++.|...+.|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            44455555555555555555544443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.58  E-value=3.4e-08  Score=49.88  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=16.2

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +|.|..|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            456666666666666666666665554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=3.5e-08  Score=60.67  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      .+++||.|..|+|.|.++++|.+|+++|++..
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            67899999999999999999999999999854

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.57  E-value=2.8e-08  Score=49.76  Aligned_cols=28  Identities=50%  Similarity=0.999  Sum_probs=16.6

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            3556666666666666666666655543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.56  E-value=2.7e-08  Score=49.39  Aligned_cols=25  Identities=24%  Similarity=0.580  Sum_probs=13.1

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4555555555555555555555443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=5.4e-08  Score=50.23  Aligned_cols=28  Identities=32%  Similarity=0.673  Sum_probs=17.5

Q ss_pred             CcccCC--cccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCP--ECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~--~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +||.|.  .|++.|.+.+.|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            456666  5666666666666666666554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.56  E-value=2e-09  Score=56.21  Aligned_cols=31  Identities=16%  Similarity=0.366  Sum_probs=28.2

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH   47 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~   47 (181)
                      +||.|..|++.|.....|..|+++|         ++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H---------~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTA---------FIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSS---------SSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHH---------ccCCCC
Confidence            6899999999999999999999988         677776

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.55  E-value=1.7e-08  Score=54.45  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             CCCCcccCCcccccCCCchhHHHHH
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHM   66 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~   66 (181)
                      .+++||.|..|+|+|.++++|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            6899999999999999999999998

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.55  E-value=2.9e-08  Score=49.29  Aligned_cols=27  Identities=26%  Similarity=0.550  Sum_probs=25.1

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            479999999999999999999999884

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.55  E-value=2.7e-08  Score=49.72  Aligned_cols=25  Identities=28%  Similarity=0.708  Sum_probs=12.2

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            4445555555555544455554443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.53  E-value=2e-08  Score=50.05  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=14.1

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4555555555555555555555543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.53  E-value=6.5e-09  Score=59.22  Aligned_cols=33  Identities=15%  Similarity=0.468  Sum_probs=29.9

Q ss_pred             CcccCCCCceecc--cchhhccChhhHHHHHHHhc
Q psy9958           1 MLIHIDQNPYLCD--HCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         1 ~~~Ht~ekp~~C~--~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +++|++++||.|.  .|++.|..+..|..|+++|.
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            3579999999996  69999999999999999983

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.53  E-value=5e-08  Score=50.03  Aligned_cols=28  Identities=29%  Similarity=0.584  Sum_probs=17.2

Q ss_pred             CcccCC--cccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCP--ECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~--~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +||.|.  .|++.|...+.|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            356665  5666666666666666666554

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.52  E-value=2.5e-08  Score=49.66  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=25.0

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      ++||.|..|++.|...++|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            379999999999999999999999884

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=1.8e-09  Score=66.82  Aligned_cols=58  Identities=12%  Similarity=0.252  Sum_probs=48.6

Q ss_pred             hhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeeecC
Q psy9958          22 KQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIIDG   95 (181)
Q Consensus        22 ~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (181)
                      +..|..|++.|         .++++|.|..|++.|.....|..       .++|.|..|+..|.....+..|..
T Consensus         3 ~~~l~~H~~~h---------~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~   60 (73)
T 2ctu_A            3 SGSSGKRQKIH---------LGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEG   60 (73)
T ss_dssp             CCSCCCCCCCC---------CCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSS
T ss_pred             chhHHHHHHHh---------CCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHH
Confidence            45677888776         67899999999999999999876       788999999999988776666554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.91  E-value=1.2e-08  Score=51.47  Aligned_cols=26  Identities=31%  Similarity=0.632  Sum_probs=13.0

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ||.|..|++.|...++|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            44555555555555555555554443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.50  E-value=5.8e-08  Score=47.95  Aligned_cols=26  Identities=35%  Similarity=0.622  Sum_probs=15.9

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ||.|..|++.|..++.|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            45666666666666666666666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.50  E-value=6.1e-08  Score=48.89  Aligned_cols=30  Identities=30%  Similarity=0.641  Sum_probs=27.5

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      ++||.|..|++.|.....|..|+++|.+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            379999999999999999999999998764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=51.53  Aligned_cols=27  Identities=33%  Similarity=0.721  Sum_probs=13.3

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +||.|..|++.|...++|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            344555555555555555555544443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.49  E-value=3.2e-08  Score=49.61  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=14.2

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|..|++.|.....|..|+++|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHh
Confidence            3555555555555555555555555

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.48  E-value=4.6e-08  Score=48.81  Aligned_cols=28  Identities=25%  Similarity=0.485  Sum_probs=25.8

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ++||.|..|++.|...+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3789999999999999999999999874

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.47  E-value=9.2e-08  Score=48.37  Aligned_cols=28  Identities=32%  Similarity=0.707  Sum_probs=19.0

Q ss_pred             CcccCCcccccCCCchhHHHH-HHhcCCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRH-MTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H-~~~h~~~   72 (181)
                      +||.|..|++.|.+.+.|..| +++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            356777777777777777777 5666654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=4e-09  Score=64.47  Aligned_cols=51  Identities=16%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHH-HHHHhhhcccceeeec
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ-QVALKLGRQKKVHIID   94 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~   94 (181)
                      .+.+||.|..|++.|. .++|..|+++ .++++|.|. .|++.|.....+..|.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~   57 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHL   57 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHH
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHH
Confidence            5689999999999999 9999999999 999999999 9999887776655543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.44  E-value=9.9e-08  Score=47.79  Aligned_cols=26  Identities=27%  Similarity=0.706  Sum_probs=24.5

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            68999999999999999999999984

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.43  E-value=8.1e-08  Score=48.19  Aligned_cols=26  Identities=23%  Similarity=0.530  Sum_probs=24.5

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            68999999999999999999999984

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.6e-08  Score=48.99  Aligned_cols=23  Identities=35%  Similarity=0.908  Sum_probs=11.8

Q ss_pred             ceecccchhhccChhhHHHHHHH
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      ||.|..|++.|.....|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            45555555555555555555444

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.43  E-value=7.7e-09  Score=64.06  Aligned_cols=52  Identities=15%  Similarity=0.348  Sum_probs=44.2

Q ss_pred             CCCCcccCCc--ccccCCCchhHHHHHHhcCCCChhHHH--HHHHhhhcccceeee
Q psy9958          42 PKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDSELIEQ--QVALKLGRQKKVHII   93 (181)
Q Consensus        42 ~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~~~~--~~~~~~~~~~~~~~~   93 (181)
                      ...++|.|..  |++.|.....|..|+++|.++++|.|.  .|+..|.....+..|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H   68 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH   68 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHH
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhH
Confidence            5678999998  999999999999999999999999995  588887665544433

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.40  E-value=1.4e-07  Score=47.49  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=24.6

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            68999999999999999999999985

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.75  E-value=3.7e-08  Score=48.40  Aligned_cols=26  Identities=35%  Similarity=0.659  Sum_probs=24.2

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      +||.|..|++.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999874

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.39  E-value=1.7e-07  Score=48.30  Aligned_cols=27  Identities=37%  Similarity=0.749  Sum_probs=25.1

Q ss_pred             CCceecc--cchhhccChhhHHHHHHHhc
Q psy9958           7 QNPYLCD--HCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         7 ekp~~C~--~C~k~f~~~~~L~~H~~~hh   33 (181)
                      ++||.|.  .|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            5899999  89999999999999999983

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.38  E-value=1.3e-07  Score=47.24  Aligned_cols=29  Identities=41%  Similarity=0.811  Sum_probs=26.6

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +||.|..|++.|.....|..|+++|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999998763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.6e-08  Score=49.49  Aligned_cols=27  Identities=37%  Similarity=0.855  Sum_probs=25.1

Q ss_pred             CCceecccchhhccChhhHHHHHHHhc
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            479999999999999999999999884

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.71  E-value=5e-08  Score=49.11  Aligned_cols=26  Identities=31%  Similarity=0.531  Sum_probs=24.3

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            68999999999999999999999884

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.35  E-value=1.4e-07  Score=47.05  Aligned_cols=26  Identities=35%  Similarity=0.622  Sum_probs=24.6

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +||.|..|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            68999999999999999999999985

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.32  E-value=2e-07  Score=47.65  Aligned_cols=26  Identities=27%  Similarity=0.712  Sum_probs=24.2

Q ss_pred             Cceecc--cchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCD--HCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~--~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +||.|.  .|++.|.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            689998  89999999999999999983

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.25  E-value=3.1e-07  Score=45.14  Aligned_cols=25  Identities=32%  Similarity=0.752  Sum_probs=22.7

Q ss_pred             ceecccchhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      ||.|..|++.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            6999999999999999999999873

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.21  E-value=3.7e-07  Score=46.01  Aligned_cols=25  Identities=32%  Similarity=0.821  Sum_probs=23.1

Q ss_pred             CceecccchhhccChhhHHHH-HHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRH-VNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H-~~~h   32 (181)
                      +||.|..|++.|.....|..| +++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H   26 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIH   26 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTS
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHc
Confidence            689999999999999999999 6776

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.20  E-value=4.2e-07  Score=45.36  Aligned_cols=25  Identities=28%  Similarity=0.784  Sum_probs=14.1

Q ss_pred             Cceecc--cchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCD--HCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~--~C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|.  .|++.|.....|..|+++|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            355555  5555555555555555554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.12  E-value=9.6e-07  Score=43.96  Aligned_cols=27  Identities=26%  Similarity=0.593  Sum_probs=24.9

Q ss_pred             CcccCC--cccccCCCchhHHHHHHhcCC
Q psy9958          45 KTHKCP--ECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        45 ~~~~C~--~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ++|.|.  .|++.|...+.|..|+++|.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            579999  999999999999999999874

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=2.6e-08  Score=62.74  Aligned_cols=53  Identities=9%  Similarity=-0.061  Sum_probs=44.1

Q ss_pred             hhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhc
Q psy9958          23 QLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGR   86 (181)
Q Consensus        23 ~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~   86 (181)
                      ..|..|++++         .+.+||.|..|++.|. ...|..|+ .|.+.+++.|..|+..+.+
T Consensus         3 ~~L~~H~~~~---------c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~   55 (75)
T 2d9k_A            3 SGSSGHEETE---------CPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV   55 (75)
T ss_dssp             CCCSCCCCCC---------CCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET
T ss_pred             hHHHhhCccc---------CCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH
Confidence            3456666655         7899999999999995 99999999 8999999999999876543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.75  E-value=2.7e-05  Score=47.20  Aligned_cols=58  Identities=14%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             eeccc--chhhccChhhHHHHHH-HhcCCCCCCCCCCCCcccCC--cccccCCCchhHHHHHHhcC
Q psy9958          10 YLCDH--CDQTFRQKQLLKRHVN-LYHNPHYVPPSPKEKTHKCP--ECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        10 ~~C~~--C~k~f~~~~~L~~H~~-~hh~~~~~~~~~~~~~~~C~--~C~k~F~~~~~l~~H~~~h~   70 (181)
                      |.|..  |++.|.+...|..|+. .|.+...   .....+|.|.  -|++.+.....|..|++..+
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~---~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDF---KHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCC---CCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCccc---CCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            45665  9999999999999985 4522100   0012389997  59999999999999998753

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.59  E-value=8.9e-06  Score=55.75  Aligned_cols=29  Identities=31%  Similarity=0.609  Sum_probs=23.0

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      +|.++|.|..|+|.|.+.++|..|+++..
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            67788888888888888888888876643

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.25  E-value=3.8e-05  Score=52.57  Aligned_cols=29  Identities=21%  Similarity=0.185  Sum_probs=27.1

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHH
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      .|+|++||.|..|++.|.+...|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            58999999999999999999999999765

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.06  E-value=0.00038  Score=47.96  Aligned_cols=60  Identities=15%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             CceecccchhhccChhhHHHHH--HHhcCC----------CC------------CCCCCCCCcccCCcccccCCCchhHH
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHV--NLYHNP----------HY------------VPPSPKEKTHKCPECKKAFRHKGNLL   63 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~--~~hh~~----------~~------------~~~~~~~~~~~C~~C~k~F~~~~~l~   63 (181)
                      +++.|.+|...|.+...+..|.  +.|...          ..            .......+.|-|.+|++.|.+...|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            6789999999999999999998  333110          00            01123466889999999999999999


Q ss_pred             HHHH
Q psy9958          64 RHMT   67 (181)
Q Consensus        64 ~H~~   67 (181)
                      .|..
T Consensus       111 ~H~~  114 (127)
T 1zu1_A          111 SHYI  114 (127)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            9975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.64  E-value=0.0012  Score=36.80  Aligned_cols=24  Identities=33%  Similarity=0.663  Sum_probs=17.5

Q ss_pred             CcccCCcccccCCCchhHHHHHHh
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      .+|.|+.|++.|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            567777777777777777777763

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.44  E-value=0.0011  Score=37.05  Aligned_cols=25  Identities=24%  Similarity=0.626  Sum_probs=23.1

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      .+|.|+.|+..|+....|++||+..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            6899999999999999999999854

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.98  E-value=0.033  Score=39.80  Aligned_cols=57  Identities=16%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      ++..|+.|+..+. +..|..|....         -..++-.|+.|+..|.. ..|..|..++.|..++
T Consensus       109 ~~v~C~~C~~~~~-r~~l~~H~~~~---------C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPFQ-KFHINIHILKD---------CPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTCCEEE-GGGHHHHHHHT---------CTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             eeeECCCCChHHH-HHHHHHHhhhh---------CCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            4556777777663 45577776543         24566677777776643 5667777777766543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=93.10  E-value=0.012  Score=36.62  Aligned_cols=53  Identities=17%  Similarity=0.429  Sum_probs=39.6

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHH
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      |..--.|.|..||..++.+ .|..|...-         .+...|.|.-|++.|.. ..++.|..
T Consensus         5 ~~~MV~F~C~~Cgd~lKK~-kv~~H~~~C---------r~~~~~SCIDC~~~F~~-~~y~~Hts   57 (79)
T 1wjv_A            5 SSGMVFFTCNACGESVKKI-QVEKHVSNC---------RNCECLSCIDCGKDFWG-DDYKSHVK   57 (79)
T ss_dssp             SCCCCEEEESSSCCEEETT-HHHHHHHHC---------TTCCEEEETTTTEEEEG-GGTTTCCC
T ss_pred             CCceeEEEcCCCCCeeecc-cchhHHhhC---------CCCCcEEecccCCeeCC-CCEeCEee
Confidence            3344569999999998854 689997765         34468999999999985 55666643

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=93.01  E-value=0.057  Score=32.20  Aligned_cols=31  Identities=29%  Similarity=0.582  Sum_probs=25.8

Q ss_pred             ccCCCC------ceecc--cchhhccChhhHHHHHHHhc
Q psy9958           3 IHIDQN------PYLCD--HCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         3 ~Ht~ek------p~~C~--~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .|.+.+      +|.|.  -|++.++....|..|++..|
T Consensus        26 ~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           26 DHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             HSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             hccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            466655      89998  59999999999999999864

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.70  E-value=0.053  Score=28.16  Aligned_cols=21  Identities=29%  Similarity=0.774  Sum_probs=13.8

Q ss_pred             ccCCcccccCCCchhHHHHHH
Q psy9958          47 HKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      |.|++|.+.|.+...|..|-.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHH
Confidence            666666666666666666643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.31  E-value=0.076  Score=27.57  Aligned_cols=26  Identities=19%  Similarity=0.562  Sum_probs=23.5

Q ss_pred             ceecccchhhccChhhHHHHHHHhcC
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHN   34 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~   34 (181)
                      .|.|++|-+.|.+...|..|....|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            59999999999999999999887764

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=92.13  E-value=0.11  Score=33.05  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=24.4

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      ....|..||+.|..   |.+|+++|++-.+....
T Consensus        20 d~iiClecGK~fK~---LkRHL~~~hgltpeeYR   50 (87)
T 2jsp_A           20 DHIVCLECGGSFKS---LKRHLTTHHSMTPEEYR   50 (87)
T ss_dssp             SCEECTBTCCEESB---HHHHHHHTTCSCHHHHH
T ss_pred             CceEecccchhhHH---HHHHHHHccCCCHHHHH
Confidence            44589999999984   88999998888776543

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=89.38  E-value=0.14  Score=33.62  Aligned_cols=12  Identities=33%  Similarity=0.899  Sum_probs=6.9

Q ss_pred             Cceecccchhhc
Q psy9958           8 NPYLCDHCDQTF   19 (181)
Q Consensus         8 kp~~C~~C~k~f   19 (181)
                      .||+|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            355566666555

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=89.04  E-value=0.16  Score=32.28  Aligned_cols=23  Identities=35%  Similarity=0.742  Sum_probs=19.4

Q ss_pred             ceecccchhhccChhhHHHHHHHhcC
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHN   34 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~   34 (181)
                      -..|-.||+.|+   .|++|++.+|+
T Consensus        21 ~iiClecGK~fK---~LkRHL~~~hg   43 (87)
T 2jsp_A           21 HIVCLECGGSFK---SLKRHLTTHHS   43 (87)
T ss_dssp             CEECTBTCCEES---BHHHHHHHTTC
T ss_pred             ceEecccchhhH---HHHHHHHHccC
Confidence            357999999999   48899999764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=86.98  E-value=0.27  Score=33.46  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=24.9

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHH
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      .+.+.+.|-|.+|++.|.+...|..|.+.
T Consensus        87 ~~~~~~~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           87 SDGEDRSKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             SSCCCTTTEETTTTEECSSHHHHHHHHTS
T ss_pred             ccCCCCCeEcCCCCCEeCCHHHHHHHHCC
Confidence            35567789999999999999999999754

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.73  E-value=0.7  Score=24.06  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=12.7

Q ss_pred             CcccCCcccccCCCchhHHHHHH
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      .++.|..|+-+|..-.++..|++
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            34455555555555555555554

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=86.70  E-value=0.37  Score=26.70  Aligned_cols=31  Identities=35%  Similarity=0.684  Sum_probs=19.6

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCccccc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKA   55 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~   55 (181)
                      ..|.|-.||+.|.... |.                .-.-.+|+.||+.
T Consensus         2 ~iY~C~rCg~~fs~~e-l~----------------~lP~IrCpyCGyr   32 (48)
T 4ayb_P            2 AVYRCGKCWKTFTDEQ-LK----------------VLPGVRCPYCGYK   32 (48)
T ss_dssp             ---CCCCTTTTCCCCC-SC----------------CCSSSCCTTTCCS
T ss_pred             cEEEeeccCCCccHHH-Hh----------------hCCCcccCccCcE
Confidence            3589999999998754 11                1234579999974

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.04  E-value=0.41  Score=29.57  Aligned_cols=11  Identities=18%  Similarity=0.570  Sum_probs=5.4

Q ss_pred             eecccchhhcc
Q psy9958          10 YLCDHCDQTFR   20 (181)
Q Consensus        10 ~~C~~C~k~f~   20 (181)
                      -.|.+|++.|.
T Consensus        29 A~Ck~C~k~ls   39 (76)
T 2djr_A           29 ATCRLCGRQVS   39 (76)
T ss_dssp             EEESSSCCBCC
T ss_pred             EECCCCCCccC
Confidence            44555555544

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=84.92  E-value=0.54  Score=23.78  Aligned_cols=25  Identities=20%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             eecccchhhccChhhHHHHHHHhcC
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHN   34 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~   34 (181)
                      -.|.+|.|.|+.-.+|..|+|-.|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4688888888888888888887653

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.47  E-value=0.52  Score=29.09  Aligned_cols=28  Identities=14%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CcccCCcccccCC-------CchhHHHHHHhcCCC
Q psy9958          45 KTHKCPECKKAFR-------HKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~C~k~F~-------~~~~l~~H~~~h~~~   72 (181)
                      ..-.|.+|++.|.       .-++|.+|++.+|..
T Consensus        27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           27 QYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             SCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             CEEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            4568999999998       357899999877654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=83.93  E-value=0.63  Score=24.24  Aligned_cols=27  Identities=22%  Similarity=0.495  Sum_probs=23.2

Q ss_pred             CCCceecccchhhccChhhHHHHHHHh
Q psy9958           6 DQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         6 ~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      ...++.|..|+-+|+....+..|.+..
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             ccCcCeeccccceehhhHHHhhhheec
Confidence            356789999999999999999997654

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=83.31  E-value=0.44  Score=27.24  Aligned_cols=19  Identities=16%  Similarity=0.614  Sum_probs=10.2

Q ss_pred             ecccchhhccChhhHHHHH
Q psy9958          11 LCDHCDQTFRQKQLLKRHV   29 (181)
Q Consensus        11 ~C~~C~k~f~~~~~L~~H~   29 (181)
                      .|.+|+..|..+..|+.|+
T Consensus        15 eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHH
T ss_pred             cccccCcccccccchhhhh
Confidence            4555555555555555554

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=82.88  E-value=0.27  Score=27.31  Aligned_cols=14  Identities=21%  Similarity=0.852  Sum_probs=11.7

Q ss_pred             CceecccchhhccC
Q psy9958           8 NPYLCDHCDQTFRQ   21 (181)
Q Consensus         8 kp~~C~~C~k~f~~   21 (181)
                      +.|+|.+||..|.-
T Consensus         3 ~~y~C~vCGyvyd~   16 (46)
T 6rxn_A            3 QKYVCNVCGYEYDP   16 (46)
T ss_dssp             CCEEETTTCCEECG
T ss_pred             CEEECCCCCeEEeC
Confidence            56999999988864

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=82.61  E-value=1.9  Score=24.62  Aligned_cols=47  Identities=21%  Similarity=0.482  Sum_probs=36.5

Q ss_pred             eecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc-cCCCchhHHHHHHh
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK-AFRHKGNLLRHMTL   68 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k-~F~~~~~l~~H~~~   68 (181)
                      -.|++|..-.-+...|..|...-            ..=+|+.|-. .-.+.+.|+.|.++
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sC------------p~gqCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSC------------INGQCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHH------------TTTBCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccC------------CCCCCCcccCcCCcCHHHHHHHHHH
Confidence            36899998888999999998887            2225777753 56778899999765

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=81.05  E-value=0.81  Score=33.77  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.6

Q ss_pred             CCcccCCcccccCCC-chhHHHHHHhc
Q psy9958          44 EKTHKCPECKKAFRH-KGNLLRHMTLH   69 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~-~~~l~~H~~~h   69 (181)
                      ..|.+|..|++.|.+ ...|+.|+..|
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            468899999999987 99999998755

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=80.92  E-value=0.18  Score=33.70  Aligned_cols=15  Identities=20%  Similarity=0.490  Sum_probs=10.3

Q ss_pred             CcccCCcccccCCCc
Q psy9958          45 KTHKCPECKKAFRHK   59 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~   59 (181)
                      .-|.|..|++.|..-
T Consensus        77 GIW~C~~Cgk~fAGG   91 (116)
T 3cc2_Z           77 GIWQCSYCDYKFTGG   91 (116)
T ss_dssp             TEEEETTTCCEEECC
T ss_pred             eeEECCCCCCEEECC
Confidence            456788888776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-10
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	9e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	2e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	5e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-05
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	7e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-05
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	4e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	6e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	4e-04
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	5e-04
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	9e-04
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	0.001
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.001
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.002
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	0.004

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 3e-10
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTL 68
           Y C  C ++F  K    RH++++              + C  C K F+ K +L+ HM +
Sbjct: 3  LYPCQ-CGKSFTHKSQRDRHMSMHLGLRP---------YGCGVCGKKFKMKHHLVGHMKI 52

Query: 69 H 69
          H
Sbjct: 53 H 53

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (98), Expect = 9e-07
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          +K  +C  C + F    +L  H+  H
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTHIRTH 26

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (95), Expect = 2e-06
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C EC KAF     L++H  +H
Sbjct: 5  EKPYGCVECGKAFSRSSILVQHQRVH 30

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (78), Expect = 5e-04
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRH 28
          IH  + PY C  C + F +  +L +H
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQH 26

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 3e-06
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK + C  C K FR K  L  H   +
Sbjct: 6  EKPYACSHCDKTFRQKQLLDMHFKRY 31

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHY 37
           H  + PY C HCD+TFRQKQLL  H   YH+P++
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 39.1 bits (92), Expect = 7e-06
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
          ++  C  C +AF  + +L RH   H
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSH 25

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (90), Expect = 2e-05
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHM 66
           K + C  C K F    +L  H+
Sbjct: 3  GKPYICQSCGKGFSRPDHLNGHI 25

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 8/41 (19%)

Query: 9  PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKC 49
          PY+C  C + F +   L  H+   H          E+ HKC
Sbjct: 5  PYICQSCGKGFSRPDHLNGHIKQVHT--------SERPHKC 37

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 3e-05
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
          K   CPEC K F    +L +H+  H
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTH 25

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (86), Expect = 4e-05
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 45 KTHKCPECKKAFRHKGNLLRHMTLH 69
          K +KC EC KAF     L+ H  +H
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIH 25

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 4e-05
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          EK ++C  C   F   G +  H+   
Sbjct: 6  EKPYECYICHARFTQSGTMKMHILQK 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (82), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 3  IHIDQNPYLCDHCDQTFRQKQLLKRHVNLYH 33
           H  + PY C  C   F Q   +K H+   H
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (85), Expect = 6e-05
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
          ++   C  C  AF  K N  RH+ +H
Sbjct: 5  KRPFVCRICLSAFTTKANCARHLKVH 30

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           K  +CP+C ++F    +L  H   H
Sbjct: 9  IKPFQCPDCDRSFSRSDHLALHRKRH 34

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 44 EKTHKCPE--CKKAFRHKGNLLRHMTLH 69
          ++ + C    C KAF    +L+RH   H
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 2/27 (7%)

Query: 45 KTHKC--PECKKAFRHKGNLLRHMTLH 69
          +   C    C K F     L RH   H
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTH 27

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 9e-04
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 45 KTHKCPE--CKKAFRHKGNLLRHMTLH 69
          K HKC    C+K++    NL  H+  H
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSH 27

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (76), Expect = 0.001
 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 45 KTHKCPE--CKKAFRHKGNLLRHMTLH 69
          + + CP   C + F    +L RH+ +H
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIH 27

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.001
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 46 THKCPE--CKKAFRHKGNLLRHMTLH 69
          +  CPE  C K+F  K +L  HM LH
Sbjct: 1  SFSCPEPACGKSFNFKKHLKEHMKLH 26

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 44 EKTHKCPECKKAFRHKGNLLRHMTLH 69
           + +KC EC K+F H  +L +H   H
Sbjct: 10 RRRYKCDECGKSFSHSSDLSKHRRTH 35

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.6 bits (72), Expect = 0.004
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)

Query: 45 KTHKCPE--CKKAFRHKGNLLRHMTLH 69
          K  +C    C K F    NL  H+ +H
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIH 27

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.77
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.51
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.42
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.42
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.39
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.39
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.36
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.34
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.3
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.27
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.24
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.24
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.22
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.22
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.18
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.16
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.15
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.14
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.08
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.08
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.07
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.05
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.04
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.03
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.02
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.97
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.96
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.9
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.88
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.85
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.83
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.82
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.79
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.79
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.71
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.62
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.47
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.31
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.16
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.08
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.06
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.04
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.99
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.96
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.93
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.93
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.91
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.89
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.86
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.85
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.85
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.81
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.76
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.75
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.7
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.69
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.66
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.64
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.6
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.56
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.55
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.5
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.46
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.4
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.32
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.31
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.24
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.23
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.22
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.15
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.85
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.84
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.79
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.52
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.48
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.48
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.48
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.48
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.18
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.96
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.9
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.35
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.14
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.06
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.8
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.78
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.72
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.33
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.32
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	94.27
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.69
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	93.48
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.43
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.83
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	92.7
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.66
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.42
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.02
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	91.45
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.39
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.39
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.28
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.02
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	90.7
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.61
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.53
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	87.18
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	86.85
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	84.49
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	83.58
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	83.57
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	81.81
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	81.55

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-19  Score=106.64  Aligned_cols=53  Identities=30%  Similarity=0.652  Sum_probs=50.9

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCchhHHHHHHhc
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h   69 (181)
                      ||||.|+ ||+.|..+..|..|+++|         ++++||.|..||++|...++|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~H---------t~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMH---------LGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHH---------SCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhcc---------ccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6999995 999999999999999998         7899999999999999999999999987

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.9e-15  Score=79.47  Aligned_cols=33  Identities=55%  Similarity=1.064  Sum_probs=29.6

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhcC
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYHN   34 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh~   34 (181)
                      |+|||+|||+|.+|+++|..++.|+.|+++|++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            689999999999999999999999999999864

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-14  Score=74.11  Aligned_cols=30  Identities=30%  Similarity=0.712  Sum_probs=23.9

Q ss_pred             ccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           3 IHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         3 ~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +|||+|||.|..||++|..++.|..|+++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            577888888888888888888888888777

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.5e-14  Score=75.61  Aligned_cols=32  Identities=31%  Similarity=0.569  Sum_probs=28.5

Q ss_pred             cccCCCCceecccchhhccChhhHHHHHHHhc
Q psy9958           2 LIHIDQNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         2 ~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      |+|||+|||+|++|+++|.++.+|++|++.+|
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            68999999999999999999999999987765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.4e-14  Score=75.41  Aligned_cols=39  Identities=31%  Similarity=0.738  Sum_probs=32.4

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCc
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPE   51 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~   51 (181)
                      +-+|||+|..|||+|....+|++|++..|        ++++||+|.+
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~~L~~H~r~~H--------t~ekpy~C~i   39 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH--------TSERPHKCQV   39 (39)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTS--------CCCCCCCSSS
T ss_pred             CCCCCccCCCCCCCcCChHHhhccCcCcc--------CCCcCcCCcC
Confidence            35789999999999999999999987422        7899999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=5.4e-14  Score=75.43  Aligned_cols=32  Identities=22%  Similarity=0.434  Sum_probs=24.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      .|+|||+|||+|..|+++|.++++|..|+++|
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            36777777777777777777777777777776

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6e-14  Score=75.75  Aligned_cols=30  Identities=33%  Similarity=0.674  Sum_probs=15.1

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ++++||.|..|||+|.+.++|.+|+++|+|
T Consensus         8 t~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           8 RERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             CCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            444555555555555555555555555544

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.7e-14  Score=76.19  Aligned_cols=32  Identities=22%  Similarity=0.486  Sum_probs=31.1

Q ss_pred             CcccCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           1 MLIHIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         1 ~~~Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +++|+++|||.|+.|||+|...++|..|+++|
T Consensus         4 ~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~H   35 (38)
T d2cota2           4 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTH   35 (38)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             CcccCCCCCEecCCCCceeeCHHHHHHhCccC
Confidence            68999999999999999999999999999998

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.8e-13  Score=72.01  Aligned_cols=29  Identities=24%  Similarity=0.569  Sum_probs=22.1

Q ss_pred             cCCCCceecccchhhccChhhHHHHHHHh
Q psy9958           4 HIDQNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         4 Ht~ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |||+|||+|.+|+|.|.++.+|++|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            67777777777777777777777777776

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.1e-13  Score=69.70  Aligned_cols=32  Identities=34%  Similarity=0.606  Sum_probs=30.4

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      |+++|||+|..|||+|.++++|.+|+++|+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            48999999999999999999999999999885

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-12  Score=69.55  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=30.7

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      .|+|++||+|..||++|..+++|..|+++|+.+
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            358999999999999999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.1e-12  Score=69.03  Aligned_cols=32  Identities=31%  Similarity=0.579  Sum_probs=30.0

Q ss_pred             CCCCCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          41 SPKEKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      ++|+|||+|.+|+|.|.++++|.+|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            38999999999999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=8.5e-13  Score=70.64  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=28.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +++|||+|..|+++|.++++|.+|+++|..
T Consensus         7 TgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           7 TGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            899999999999999999999999999864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.24  E-value=1.7e-12  Score=65.41  Aligned_cols=29  Identities=28%  Similarity=0.634  Sum_probs=18.1

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +||.|++|+|+|.++++|.+|+++|++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            45666666666666666666666666553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=1.1e-12  Score=65.36  Aligned_cols=26  Identities=27%  Similarity=0.658  Sum_probs=15.3

Q ss_pred             CCceecccchhhccChhhHHHHHHHh
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      ||||+|.+|+|+|.++.+|.+|+++|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~H   26 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTH   26 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCc
Confidence            45566666666666666666665555

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.1e-12  Score=64.35  Aligned_cols=29  Identities=34%  Similarity=0.745  Sum_probs=19.6

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      |||.|..|+|+|.++++|.+|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            46677777777777777777777776653

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-12  Score=70.58  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=33.0

Q ss_pred             CCCcccCCcccccCCCchhHHHHHH-hcCCCChhHHH
Q psy9958          43 KEKTHKCPECKKAFRHKGNLLRHMT-LHDPDSELIEQ   78 (181)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~l~~H~~-~h~~~~~~~~~   78 (181)
                      .+|||+|..|||+|.++++|.+|++ +|++++||.|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            4699999999999999999999986 79999999874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.3e-12  Score=66.95  Aligned_cols=33  Identities=21%  Similarity=0.461  Sum_probs=28.9

Q ss_pred             CCCCCCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          40 PSPKEKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +|+|++||+|+.|+++|.++++|.+|++.++.+
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            459999999999999999999999998665543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=4.3e-12  Score=63.22  Aligned_cols=28  Identities=25%  Similarity=0.590  Sum_probs=26.7

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +|||+|..|+|+|.++++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999975

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.7e-13  Score=78.28  Aligned_cols=50  Identities=24%  Similarity=0.250  Sum_probs=44.7

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCCCChhHHHHHHHhhhcccceeeec
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDSELIEQQVALKLGRQKKVHIID   94 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~   94 (181)
                      +|||.|. ||++|..+.+|..|+++|.++++|.|..|+..|.....+..+.
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~   50 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM   50 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHH
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHH
Confidence            5899995 9999999999999999999999999999999998876655443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.14  E-value=7.6e-12  Score=62.98  Aligned_cols=25  Identities=28%  Similarity=0.739  Sum_probs=24.5

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |||.|++|+|+|.++++|++|+++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~H   25 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCcc
Confidence            7999999999999999999999998

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=3.4e-12  Score=71.79  Aligned_cols=32  Identities=31%  Similarity=0.559  Sum_probs=23.0

Q ss_pred             CCCCcccCCc--ccccCCCchhHHHHHHhcCCCC
Q psy9958          42 PKEKTHKCPE--CKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        42 ~~~~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      ++++||.|.+  |+|+|.++++|..|+++|++++
T Consensus        14 ~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            5677777766  7777777777777777777664

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=61.31  Aligned_cols=26  Identities=19%  Similarity=0.612  Sum_probs=24.9

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      |||.|.+|+|+|.++++|.+|+++|.
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            79999999999999999999999993

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2e-11  Score=68.57  Aligned_cols=31  Identities=16%  Similarity=0.535  Sum_probs=29.4

Q ss_pred             cccCCCCceeccc--chhhccChhhHHHHHHHh
Q psy9958           2 LIHIDQNPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         2 ~~Ht~ekp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      ..|+|+|||.|.+  |+|+|.++++|+.|+++|
T Consensus        11 ~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~H   43 (47)
T d1ncsa_          11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             hhccCCCCeECCcCCCCccccCchHHHhhcccc
Confidence            3599999999988  999999999999999999

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.5e-11  Score=59.75  Aligned_cols=25  Identities=32%  Similarity=0.659  Sum_probs=13.5

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |||+|..|||.|..++.|..|+|+|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            4555555555555555555555554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.7e-11  Score=63.47  Aligned_cols=32  Identities=28%  Similarity=0.670  Sum_probs=28.8

Q ss_pred             eeccc--chhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCC
Q psy9958          10 YLCDH--CDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCP   50 (181)
Q Consensus        10 ~~C~~--C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~   50 (181)
                      |.|++  |+++|.++.+|++|+++|         ++++||+|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~H---------tgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLH---------SDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHH---------HTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCee---------CCCCCEeCC
Confidence            78887  999999999999999998         789999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.7e-11  Score=59.72  Aligned_cols=28  Identities=36%  Similarity=0.719  Sum_probs=16.7

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      |||+|.+  |+|+|.++++|++|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4566655  666666666666666666553

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5e-11  Score=57.87  Aligned_cols=26  Identities=42%  Similarity=0.812  Sum_probs=24.8

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      |||+|..|||+|.++++|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.5e-10  Score=59.02  Aligned_cols=29  Identities=28%  Similarity=0.547  Sum_probs=18.1

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCCCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      +||.|+.  |+|+|.+.++|.+|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            4666643  6666666666666666666653

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.4e-11  Score=59.66  Aligned_cols=25  Identities=28%  Similarity=0.708  Sum_probs=15.0

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |||+|++  |+|+|.++++|++|+|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~H   27 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIH   27 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCcccccc
Confidence            4566655  666666666666666655

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.5e-10  Score=57.55  Aligned_cols=26  Identities=23%  Similarity=0.554  Sum_probs=24.7

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~hh   33 (181)
                      |||+|++  |+|+|.++++|++|+|+|.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            7999999  9999999999999999983

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.7e-10  Score=57.54  Aligned_cols=28  Identities=36%  Similarity=0.599  Sum_probs=26.4

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      |||.|++  |+|+|.++++|.+|+|+|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6999988  999999999999999999885

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=9.8e-10  Score=56.16  Aligned_cols=27  Identities=33%  Similarity=0.706  Sum_probs=14.7

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +||.|.+  |+|+|.+.++|.+|+++|..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            4555554  55555555555555555543

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.4e-10  Score=56.84  Aligned_cols=25  Identities=28%  Similarity=0.763  Sum_probs=23.7

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |||+|++  |+|+|.+.++|++|+++|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~H   27 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcc
Confidence            7999975  999999999999999998

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.1e-09  Score=50.75  Aligned_cols=26  Identities=42%  Similarity=0.752  Sum_probs=16.0

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |++|..|+|.|+++..|+.|||.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45566666666666666666666653

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.5e-10  Score=54.33  Aligned_cols=25  Identities=36%  Similarity=0.709  Sum_probs=13.9

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhc
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h   69 (181)
                      +||.|+.  |+|+|.+.++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3555555  555555555555555555

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-10  Score=60.13  Aligned_cols=32  Identities=41%  Similarity=0.787  Sum_probs=29.6

Q ss_pred             ccCCc--ccccCCCchhHHHHHHhcCCCChhHHH
Q psy9958          47 HKCPE--CKKAFRHKGNLLRHMTLHDPDSELIEQ   78 (181)
Q Consensus        47 ~~C~~--C~k~F~~~~~l~~H~~~h~~~~~~~~~   78 (181)
                      |.|+.  |+|+|.++++|++|+++|++++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            77877  999999999999999999999999873

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=5.6e-10  Score=55.76  Aligned_cols=25  Identities=36%  Similarity=0.850  Sum_probs=15.1

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |||+|.+  |+|+|.+..+|++|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCcc
Confidence            4566655  666666666666666655

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=1.2e-09  Score=55.82  Aligned_cols=27  Identities=41%  Similarity=0.840  Sum_probs=25.6

Q ss_pred             CCceeccc--chhhccChhhHHHHHHHhc
Q psy9958           7 QNPYLCDH--CDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         7 ekp~~C~~--C~k~f~~~~~L~~H~~~hh   33 (181)
                      +|||.|.+  |+|+|.+..+|++|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            69999999  9999999999999999984

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.4e-09  Score=53.65  Aligned_cols=25  Identities=36%  Similarity=0.790  Sum_probs=24.2

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |||+|++  |+|+|.+..+|++|+|+|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            7999999  999999999999999998

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.7e-09  Score=53.96  Aligned_cols=27  Identities=30%  Similarity=0.797  Sum_probs=25.4

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |||.|.+  |+|+|.+.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6999988  99999999999999999975

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=5.4e-09  Score=49.89  Aligned_cols=27  Identities=30%  Similarity=0.568  Sum_probs=21.3

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      ++||.|.+||+.|.++...++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            478888888888888888888887774

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.3e-09  Score=48.36  Aligned_cols=24  Identities=33%  Similarity=0.689  Sum_probs=23.1

Q ss_pred             ceecccchhhccChhhHHHHHHHh
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |++|++|+|.|+++..|+.|+|.|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CCccchhhhHhcchhHHHHHhhcc
Confidence            789999999999999999999998

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=3.1e-08  Score=47.19  Aligned_cols=26  Identities=31%  Similarity=0.774  Sum_probs=24.8

Q ss_pred             CCceecccchhhccChhhHHHHHHHh
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +|||.|++||+.|.+....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            69999999999999999999999987

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.7e-08  Score=47.67  Aligned_cols=26  Identities=31%  Similarity=0.692  Sum_probs=20.1

Q ss_pred             CCceecccchhhccChhhHHHHHHHh
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +|||.|++|+.+|+++..+..|.|+|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            57777777777777777777777776

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=9e-08  Score=46.28  Aligned_cols=29  Identities=34%  Similarity=0.660  Sum_probs=27.1

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      ++||.|++|+.+|.++..+..|.|.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.4e-07  Score=44.62  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=15.3

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +||+|.+|...-+.++.|..|+|.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.9e-07  Score=46.14  Aligned_cols=31  Identities=29%  Similarity=0.438  Sum_probs=19.9

Q ss_pred             CceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTH   47 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~   47 (181)
                      |...|..|||.|....+|.+|...|         ++++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklsh---------s~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSH---------SGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGS---------CSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhccc---------CCCCCC
Confidence            4455666666666666666666655         566665

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.5e-07  Score=43.71  Aligned_cols=26  Identities=31%  Similarity=0.864  Sum_probs=15.0

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~hh   33 (181)
                      |||.|.+  |+|++...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            4566655  5666666666666655543

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.5e-07  Score=45.18  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=29.1

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCCChh
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPDSEL   75 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~~~~   75 (181)
                      +...|..|||.|.-...|.+|.-.|.+++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            5678999999999999999999999999987

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.1e-07  Score=42.10  Aligned_cols=27  Identities=22%  Similarity=0.487  Sum_probs=25.2

Q ss_pred             CCceecccchhhccChhhHHHHHHHhc
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      ++||+|+.|.+.-+..+.|..|.|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            689999999999999999999999983

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9e-07  Score=42.62  Aligned_cols=27  Identities=22%  Similarity=0.438  Sum_probs=24.7

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +||.|..  |+|+|..++.|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899988  99999999999999998775

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1e-06  Score=41.31  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=11.7

Q ss_pred             eecccchhhccChhhHHHHHHHh
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +.|..|||.|...+.|++|...|
T Consensus         3 hvc~ecgkaf~essklkrh~lvh   25 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVH   25 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGT
T ss_pred             chHHHHhHHHHHHHHHHHHhhcc
Confidence            44555555555555555554444

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.5e-06  Score=40.73  Aligned_cols=27  Identities=41%  Similarity=0.760  Sum_probs=24.6

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      -+.|..|||+|..++.|++|.-+|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            357999999999999999999999875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.6e-06  Score=41.09  Aligned_cols=23  Identities=35%  Similarity=0.831  Sum_probs=12.2

Q ss_pred             ceecccchhhccChhhHHHHHHH
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      ||.|..|..+|+.+.+|..||++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45555555555555555555543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.5e-06  Score=40.37  Aligned_cols=23  Identities=26%  Similarity=0.794  Sum_probs=15.4

Q ss_pred             eecccchhhccChhhHHHHHHHh
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |.|++||......+.|+.|+|+|
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsH   24 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTH   24 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             ccccccCcccCCHHHHHHHHHHh
Confidence            56666666666666666666666

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.93  E-value=1.8e-06  Score=40.78  Aligned_cols=25  Identities=36%  Similarity=0.728  Sum_probs=14.7

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhc
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h   69 (181)
                      .||+|+.  |+++|+.++.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3556655  666666666666665554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3e-06  Score=40.35  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=17.1

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      |||.|++|.......++|+.|+++.|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            46666666666666666666666654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3.2e-06  Score=39.06  Aligned_cols=26  Identities=35%  Similarity=0.592  Sum_probs=20.2

Q ss_pred             cCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          48 KCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        48 ~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      .|+.|.|+|.++..|+.|-|.|++++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57788888888888888887777764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2e-06  Score=40.72  Aligned_cols=26  Identities=35%  Similarity=0.685  Sum_probs=23.4

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      ||.|..|+.+|..+.+|..||+....
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH   26 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAH   26 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhhh
Confidence            78999999999999999999987543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=5.6e-06  Score=39.13  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=25.7

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      .|.|+.||....-++-|+.|+|+|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            4889999999999999999999999863

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.85  E-value=5.1e-06  Score=37.76  Aligned_cols=23  Identities=39%  Similarity=0.761  Sum_probs=11.9

Q ss_pred             ccCCcccccCCCchhHHHHHHhc
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~h   69 (181)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            34555555555555555555544

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.5e-06  Score=39.36  Aligned_cols=25  Identities=28%  Similarity=0.711  Sum_probs=18.8

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |||+|..|.+.-...++|..|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            6777777777777777777777775

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.81  E-value=5.3e-06  Score=39.17  Aligned_cols=26  Identities=46%  Similarity=0.841  Sum_probs=23.7

Q ss_pred             CCceeccc--chhhccChhhHHHHHHHh
Q psy9958           7 QNPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         7 ekp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      +.||+|+.  |+++|...+.|++|.++|
T Consensus         1 q~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           1 QLPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             TCCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCCccCCccCccccccCHHHHhhhhhcc
Confidence            35999998  999999999999999876

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=6.3e-06  Score=42.86  Aligned_cols=25  Identities=32%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             CCCcccCCcccccCCCchhHHHHHH
Q psy9958          43 KEKTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      |-|||.|..|+|.|..+..+.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5688888888888888888888864

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.75  E-value=4.3e-06  Score=38.02  Aligned_cols=23  Identities=35%  Similarity=0.793  Sum_probs=22.0

Q ss_pred             eecccchhhccChhhHHHHHHHh
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |+|..|.++|..++.|.+|+|.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999987

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.70  E-value=9.5e-06  Score=41.82  Aligned_cols=25  Identities=36%  Similarity=0.778  Sum_probs=16.8

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      +.|.|.+|++.|.+.+.|-.||+.|
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CccCCCCCCCccCCcccccchHhhh
Confidence            4566666766666666666666665

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1e-05  Score=37.72  Aligned_cols=26  Identities=31%  Similarity=0.614  Sum_probs=24.8

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      +||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999985

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.66  E-value=7.6e-06  Score=39.68  Aligned_cols=20  Identities=35%  Similarity=0.775  Sum_probs=10.6

Q ss_pred             cccCCcccccCCCchhHHHH
Q psy9958          46 THKCPECKKAFRHKGNLLRH   65 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H   65 (181)
                      ||.|.+|++.|+++.-|.+|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH   20 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRH   20 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHH
Confidence            44555555555555555555

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.64  E-value=1.1e-05  Score=41.52  Aligned_cols=30  Identities=33%  Similarity=0.637  Sum_probs=27.1

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCCCC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDPDS   73 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~~~   73 (181)
                      .+.|.|..|++.|.+...|-.||+.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            367999999999999999999999997765

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.60  E-value=1.3e-05  Score=37.99  Aligned_cols=26  Identities=27%  Similarity=0.634  Sum_probs=22.1

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~hh   33 (181)
                      |||.|.+  |.|.|.+..+|.+|..+|.
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            6888887  9999999999999988873

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=3e-05  Score=36.78  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=24.6

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      +||.|..|..+....++|+.|+++.++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            689999999999999999999988654

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.1e-05  Score=40.82  Aligned_cols=27  Identities=30%  Similarity=0.669  Sum_probs=24.4

Q ss_pred             CCCCceecccchhhccChhhHHHHHHH
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      ||-|||.|..|+|.|-...++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            578999999999999999999999653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.5e-05  Score=38.60  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=13.5

Q ss_pred             CcccCCc--ccccCCCchhHHHHH-HhcC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHM-TLHD   70 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~-~~h~   70 (181)
                      +||.|..  |.|.|+..+....|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3555544  555555555555554 4443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.5e-05  Score=36.95  Aligned_cols=26  Identities=27%  Similarity=0.715  Sum_probs=14.5

Q ss_pred             CceecccchhhccChhhHHHHHHHhc
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +||+|.+|..-.++.++|..|++..|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            45566666555555555665555443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.8e-05  Score=37.52  Aligned_cols=28  Identities=29%  Similarity=0.517  Sum_probs=24.4

Q ss_pred             CcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +||+|..|..-..++++|..|++.-+++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5999999999999999999998765543

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.7e-05  Score=38.90  Aligned_cols=27  Identities=33%  Similarity=0.721  Sum_probs=17.6

Q ss_pred             CCCceeccc--chhhccChhhHHHHHHHh
Q psy9958           6 DQNPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         6 ~ekp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      ++|||.|..  |+.+|.+..+|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            466777744  777777777776666554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=2.8e-05  Score=37.65  Aligned_cols=25  Identities=28%  Similarity=0.773  Sum_probs=22.9

Q ss_pred             Cceeccc--chhhccChhhHHHHH-HHh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHV-NLY   32 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~-~~h   32 (181)
                      |||.|++  |.|.|++.+.-..|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            7999999  999999999999997 665

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.31  E-value=4.2e-05  Score=37.00  Aligned_cols=25  Identities=40%  Similarity=0.947  Sum_probs=22.7

Q ss_pred             ceecccchhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      ||.|.+|++.|.++..|.+|.+.-|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            8999999999999999999987654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=8.4e-05  Score=34.14  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=21.0

Q ss_pred             ecccchhhccChhhHHHHHHHh
Q psy9958          11 LCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        11 ~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      .|+.|.|.|.++.-|+.|-|.|
T Consensus         2 qcp~c~k~f~skyylkvhnr~h   23 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKH   23 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccccc
Confidence            5999999999999999999998

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=7.7e-05  Score=34.56  Aligned_cols=23  Identities=39%  Similarity=0.798  Sum_probs=19.9

Q ss_pred             cccCCcccccCCCchhHHHHHHh
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      ||.|..|||.|.++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            78999999999999999988643

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=7.5e-05  Score=33.79  Aligned_cols=22  Identities=36%  Similarity=0.739  Sum_probs=14.6

Q ss_pred             cccCCcccccCCCchhHHHHHH
Q psy9958          46 THKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      ||+|..|...|..+..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00011  Score=34.57  Aligned_cols=25  Identities=28%  Similarity=0.627  Sum_probs=15.4

Q ss_pred             CceecccchhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      .-|.|.+|...|++.-.|+.||..|
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvsh   27 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSH   27 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecc
Confidence            4466666666666666666666655

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00015  Score=34.06  Aligned_cols=29  Identities=31%  Similarity=0.658  Sum_probs=26.6

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +.-|.|..|...|+++-.|+.||..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            46799999999999999999999999875

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00029  Score=31.78  Aligned_cols=23  Identities=43%  Similarity=0.818  Sum_probs=21.4

Q ss_pred             ceecccchhhccChhhHHHHHHH
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      ||+|.-|...|-.+..|+.||..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999854

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00019  Score=33.20  Aligned_cols=23  Identities=26%  Similarity=0.625  Sum_probs=20.8

Q ss_pred             ceecccchhhccChhhHHHHHHH
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      ||.|..|||.|-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            79999999999999999999653

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00026  Score=36.09  Aligned_cols=28  Identities=29%  Similarity=0.668  Sum_probs=24.7

Q ss_pred             CCCcccC--CcccccCCCchhHHHHHHhcC
Q psy9958          43 KEKTHKC--PECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        43 ~~~~~~C--~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      .+|||.|  +-|+.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3799999  559999999999999998774

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.74  E-value=0.00029  Score=33.21  Aligned_cols=28  Identities=36%  Similarity=0.647  Sum_probs=24.6

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +||.|..  |.|.|.+--.|.+|.-+|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5888876  999999999999999888764

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00061  Score=31.62  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=16.1

Q ss_pred             ceecccchhhccChhhHHHHHHHh
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |-+|..|.++..++..|+.|.|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            456667777777777777776665

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00072  Score=31.28  Aligned_cols=22  Identities=27%  Similarity=0.653  Sum_probs=12.8

Q ss_pred             ccCCcccccCCCchhHHHHHHh
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      |.|+.|+....+++.|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            4566666666666666666553

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00068  Score=33.42  Aligned_cols=26  Identities=23%  Similarity=0.546  Sum_probs=18.9

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      .|.|..|||+|.++..+.+|.....+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47788888888888888777665443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00078  Score=31.25  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=23.5

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      |-+|+.|.++..++..|+.|.|+|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999999864

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.48  E-value=0.00075  Score=30.48  Aligned_cols=23  Identities=30%  Similarity=0.704  Sum_probs=14.9

Q ss_pred             eecccchhhccChhhHHHHHHHh
Q psy9958          10 YLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        10 ~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      |.|++|-|.|.++.++..|.+.-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            56666666666666666666543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=30.38  Aligned_cols=25  Identities=32%  Similarity=0.642  Sum_probs=22.8

Q ss_pred             ceecccchhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .|.|+.|+-...+++.|+.|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4899999999999999999998764

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.96  E-value=0.0015  Score=29.47  Aligned_cols=23  Identities=35%  Similarity=0.688  Sum_probs=20.9

Q ss_pred             ccCCcccccCCCchhHHHHHHhc
Q psy9958          47 HKCPECKKAFRHKGNLLRHMTLH   69 (181)
Q Consensus        47 ~~C~~C~k~F~~~~~l~~H~~~h   69 (181)
                      |.|+.|=|.|.++.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            78999999999999999998763

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0014  Score=32.21  Aligned_cols=25  Identities=24%  Similarity=0.759  Sum_probs=22.2

Q ss_pred             ceecccchhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .|+|..|+|.|.+...+.+|-....
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            5999999999999999999977653

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0033  Score=33.50  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             ceecccchhhccChhhHHHHHHHh
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~h   32 (181)
                      .|.|-.|+|.|.....|+.|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            577888888888888888887765

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.14  E-value=0.0056  Score=27.98  Aligned_cols=23  Identities=30%  Similarity=0.700  Sum_probs=15.2

Q ss_pred             eeccc--chhhccChhhHHHHHHHh
Q psy9958          10 YLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        10 ~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |.|..  |+|.|+....|+.|+-+|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            45554  777777777777776665

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0058  Score=32.55  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=23.4

Q ss_pred             CCcccCCcccccCCCchhHHHHHHhcC
Q psy9958          44 EKTHKCPECKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~l~~H~~~h~   70 (181)
                      ...|.|-.|+|.|.....|+.|..-|-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            356899999999999999999987664

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.80  E-value=0.0096  Score=28.87  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             CCCcccCCcccccCCCchhHHHHHH
Q psy9958          43 KEKTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      +..+|.|.-||-+|++.+.|..|+.
T Consensus         5 kparf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cccceeccccceeecChhHHHhhhh
Confidence            3457889999999999999998875

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0078  Score=28.13  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=18.5

Q ss_pred             ceecccchhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .|.|..|||..++...++.|+...|
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             ceechhHHHHHhhccCceEEEeecc
Confidence            4778888888887777777766654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0056  Score=30.24  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=11.6

Q ss_pred             ccCCCchhHHHHHHhcCCC
Q psy9958          54 KAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        54 k~F~~~~~l~~H~~~h~~~   72 (181)
                      +.|..+..|..|+|+|+++
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4566666666666666553

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.018  Score=26.83  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             cccCCcccccCCCchhHHHHHHh
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      .|.|..|||..++...++.|.-.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            48899999999999999999543

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.32  E-value=0.0084  Score=27.38  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             ccCCc--ccccCCCchhHHHHHHhcC
Q psy9958          47 HKCPE--CKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        47 ~~C~~--C~k~F~~~~~l~~H~~~h~   70 (181)
                      |.|..  |+|.|..-..|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            45654  9999999999999988774

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.27  E-value=0.015  Score=30.83  Aligned_cols=29  Identities=34%  Similarity=0.647  Sum_probs=21.8

Q ss_pred             CCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          43 KEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      .+.|-.|++|+....++.+|++|+...+-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            35677888888888888888888765443

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.014  Score=27.00  Aligned_cols=21  Identities=29%  Similarity=0.877  Sum_probs=14.3

Q ss_pred             ccc--chhhccChhhHHHHHHHh
Q psy9958          12 CDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus        12 C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |+.  |+|.|+..+.++.|+-+|
T Consensus         4 CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           4 CPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCSTTCCCEESSHHHHHHHHGGG
T ss_pred             CCcccHHHHhhchHHHHHHhhcc
Confidence            444  777777777777776654

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.02  Score=26.39  Aligned_cols=23  Identities=35%  Similarity=0.910  Sum_probs=19.6

Q ss_pred             cCCc--ccccCCCchhHHHHHHhcC
Q psy9958          48 KCPE--CKKAFRHKGNLLRHMTLHD   70 (181)
Q Consensus        48 ~C~~--C~k~F~~~~~l~~H~~~h~   70 (181)
                      .|+.  |+|.|+..+.++.|+-+|-
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            4555  9999999999999998874

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.43  E-value=0.013  Score=28.72  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=17.9

Q ss_pred             CCCcccCCcccccCCCchhHHHHHH
Q psy9958          43 KEKTHKCPECKKAFRHKGNLLRHMT   67 (181)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~l~~H~~   67 (181)
                      +...|.|.+|.+.|...+++.+|-.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHH
Confidence            4456777777777777777777743

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.83  E-value=0.026  Score=27.65  Aligned_cols=29  Identities=21%  Similarity=0.462  Sum_probs=25.6

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhc
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .|+..|.|.+|.+.+...+++-+|..+-|
T Consensus         4 Eg~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           4 EGEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             ccCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            45678999999999999999999988765

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.70  E-value=0.034  Score=29.35  Aligned_cols=28  Identities=36%  Similarity=0.707  Sum_probs=24.7

Q ss_pred             CCCceecccchhhccChhhHHHHHHHhc
Q psy9958           6 DQNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         6 ~ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      .+.|-.|++|+....+..+|++|....|
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            3678999999999999999999987754

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.66  E-value=0.032  Score=26.37  Aligned_cols=25  Identities=20%  Similarity=0.622  Sum_probs=15.5

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      |.|.|.+  |+-.|+....|..|.-.|
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckH   28 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKH   28 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHH
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhh
Confidence            4566654  666666666666666555

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.42  E-value=0.025  Score=26.77  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             CcccCCc--ccccCCCchhHHHHHHhcCCC
Q psy9958          45 KTHKCPE--CKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      +.|.|..  |+..|...-.|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            6788866  999999999999999888774

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.017  Score=33.47  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=22.1

Q ss_pred             CCCcccCCcccccCCCchhHHHHHHh
Q psy9958          43 KEKTHKCPECKKAFRHKGNLLRHMTL   68 (181)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~l~~H~~~   68 (181)
                      |..-|-|..|+|.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34458899999999999999999864

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.45  E-value=0.039  Score=27.97  Aligned_cols=26  Identities=31%  Similarity=0.732  Sum_probs=19.5

Q ss_pred             CCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      ++-|+|.+||..+.                      ++.|-.|++|+.
T Consensus         3 ~~~~~C~vCG~i~~----------------------g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYTAV----------------------DEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCEEE----------------------SCCCSBCTTTCC
T ss_pred             CcEEECCCCCCEec----------------------CCCCCcCCCCCC
Confidence            46789999995442                      456788999985

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.39  E-value=0.035  Score=26.81  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=20.3

Q ss_pred             CceecccchhhccChhhHHHHHH
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVN   30 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~   30 (181)
                      -.|.|.-||-+|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            45899999999999999999854

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.034  Score=27.32  Aligned_cols=25  Identities=20%  Similarity=0.563  Sum_probs=19.3

Q ss_pred             ceeccc--c---hhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDH--C---DQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~--C---~k~f~~~~~L~~H~~~hh   33 (181)
                      -|.|..  |   ++.|+.+..|..|||.|+
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HT   31 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHT   31 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHH
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcC
Confidence            455554  5   456999999999999994

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.016  Score=33.59  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             CceecccchhhccChhhHHHHHHH
Q psy9958           8 NPYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         8 kp~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      ..|-|..|+|.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            458899999999999999999765

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.068  Score=30.31  Aligned_cols=39  Identities=21%  Similarity=0.525  Sum_probs=26.9

Q ss_pred             CCCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCccccc
Q psy9958           5 IDQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKA   55 (181)
Q Consensus         5 t~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~   55 (181)
                      +...-|+|+.|++.|.....++.   .-         .-...|.|..|+-.
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L---~d---------~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL---FD---------PMTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH---EE---------TTTTEEBCSSSCCB
T ss_pred             ccCCceECCCCCCCcchhhHHHh---cC---------cCCCeEEecCCCCE
Confidence            34566999999999987655443   22         23567899999753

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=90.70  E-value=0.055  Score=27.20  Aligned_cols=27  Identities=33%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             CCCceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccc
Q psy9958           6 DQNPYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKK   54 (181)
Q Consensus         6 ~ekp~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k   54 (181)
                      +++.|.|.+||..+                      .++.|-+|++|+.
T Consensus         2 ~~~~~vC~vCGyi~----------------------~g~~Pe~CPvCg~   28 (36)
T d1yuza2           2 DDKFHLCPICGYIH----------------------KGEDFEKCPICFR   28 (36)
T ss_dssp             SCCEEECSSSCCEE----------------------ESSCCSBCTTTCC
T ss_pred             CCCEEECCCCCCEe----------------------eCCCCCcCCCCCC
Confidence            45779999999543                      2456778999985

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.61  E-value=0.097  Score=24.25  Aligned_cols=25  Identities=40%  Similarity=0.901  Sum_probs=14.6

Q ss_pred             ceeccc--chhhccChhhHHHHHHHhc
Q psy9958           9 PYLCDH--CDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         9 p~~C~~--C~k~f~~~~~L~~H~~~hh   33 (181)
                      -|+|+-  |+-.|..+.+++.|....|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            355553  6666666666666655443

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.1  Score=24.11  Aligned_cols=17  Identities=29%  Similarity=0.704  Sum_probs=9.9

Q ss_pred             chhhccChhhHHHHHHH
Q psy9958          15 CDQTFRQKQLLKRHVNL   31 (181)
Q Consensus        15 C~k~f~~~~~L~~H~~~   31 (181)
                      |||.|++++-|..|.+.
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            66666666655555543

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.18  Score=24.60  Aligned_cols=25  Identities=24%  Similarity=0.728  Sum_probs=19.8

Q ss_pred             CCceecccchhhccChhhHHHHHHH
Q psy9958           7 QNPYLCDHCDQTFRQKQLLKRHVNL   31 (181)
Q Consensus         7 ekp~~C~~C~k~f~~~~~L~~H~~~   31 (181)
                      .+.|.|+.|=|-.++...|.+|+..
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHh
Confidence            3568888888888888888888753

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.21  Score=28.18  Aligned_cols=30  Identities=20%  Similarity=0.579  Sum_probs=25.6

Q ss_pred             CCCCcccCCcccccCCCchhHHHHHHhcCC
Q psy9958          42 PKEKTHKCPECKKAFRHKGNLLRHMTLHDP   71 (181)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~l~~H~~~h~~   71 (181)
                      .....|.|..|.-.|.+...|..|+..|..
T Consensus        14 ~~s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             cCCceeeechhHHHHhhHHHHHHHHHhccH
Confidence            345679999999999999999999988754

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.49  E-value=0.36  Score=27.18  Aligned_cols=28  Identities=29%  Similarity=0.731  Sum_probs=24.6

Q ss_pred             CCCceecccchhhccChhhHHHHHHHhc
Q psy9958           6 DQNPYLCDHCDQTFRQKQLLKRHVNLYH   33 (181)
Q Consensus         6 ~ekp~~C~~C~k~f~~~~~L~~H~~~hh   33 (181)
                      +..-|.|..|.-.|.....|..|...|.
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhcc
Confidence            3456999999999999999999998874

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=83.58  E-value=0.31  Score=24.44  Aligned_cols=34  Identities=3%  Similarity=0.064  Sum_probs=24.0

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCCCCCCCCCCCCcccCCcccccCCCc
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNPHYVPPSPKEKTHKCPECKKAFRHK   59 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~~~~~~~C~~C~k~F~~~   59 (181)
                      .+.|+.||..|....        .         .-...-.|..||..+.++
T Consensus         2 R~vc~~cG~~Yh~~~--------~---------pPk~~g~CD~cg~~L~qR   35 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEF--------N---------PPKTMGIDDLTGEPLVQR   35 (37)
T ss_dssp             EEEETTTTEEEETTT--------B---------CCSSTTBCTTTCCBCBCC
T ss_pred             ceeeCCcCChhhhcc--------C---------CccccCCccCCCCcCEec
Confidence            478999998887432        1         334667899999876654

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=0.56  Score=22.93  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             ceecccchhhccChhhHHHHHHHhcCC
Q psy9958           9 PYLCDHCDQTFRQKQLLKRHVNLYHNP   35 (181)
Q Consensus         9 p~~C~~C~k~f~~~~~L~~H~~~hh~~   35 (181)
                      ...|-.|-+.|++...+-+|+.-.|+.
T Consensus         3 kltclecmrtfkssfsiwrhqvevhnq   29 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQVEVHNQ   29 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             cccHHHHHHHHHHHHHHHHhhheeccc
Confidence            456888888888888888887766654

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=81.81  E-value=0.2  Score=34.08  Aligned_cols=26  Identities=35%  Similarity=0.537  Sum_probs=21.1

Q ss_pred             cccCCcccccCCCchhHHHHHHhcCCC
Q psy9958          46 THKCPECKKAFRHKGNLLRHMTLHDPD   72 (181)
Q Consensus        46 ~~~C~~C~k~F~~~~~l~~H~~~h~~~   72 (181)
                      -|+|..||| +--..+|.+||+.|.-.
T Consensus       146 FYKCe~CgK-YvDie~~~~H~k~HG~~  171 (218)
T d2czra1         146 FYKCEECGK-YVDIENLEAHLREHGIK  171 (218)
T ss_dssp             EEECTTTCC-EEEGGGHHHHHHTTTCC
T ss_pred             EeehhhcCc-eecHHHHHHHHHHcCcc
Confidence            479999998 56678999999987543

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=0.7  Score=24.71  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=11.4

Q ss_pred             Cceeccc--chhhccChhhHHHHHHHh
Q psy9958           8 NPYLCDH--CDQTFRQKQLLKRHVNLY   32 (181)
Q Consensus         8 kp~~C~~--C~k~f~~~~~L~~H~~~h   32 (181)
                      +||.|-.  |...|.-..+|..|.+..
T Consensus        19 rpyrcvhqgc~aaftiq~nlilhy~av   45 (61)
T d1x3ca1          19 RPYRCVHQGCFAAFTIQQNLILHYQAV   45 (61)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHH
T ss_pred             CceeeeccchhhhhhhhhhHHHHHHHH
Confidence            3444443  444444444444444443