Psyllid ID: psy9997
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | 2.2.26 [Sep-21-2011] | |||||||
| Q29HY3 | 191 | Cdc42 homolog OS=Drosophi | yes | N/A | 0.415 | 0.717 | 0.934 | 1e-69 | |
| Q16YG0 | 191 | Cdc42 homolog OS=Aedes ae | N/A | N/A | 0.415 | 0.717 | 0.934 | 1e-69 | |
| P40793 | 191 | Cdc42 homolog OS=Drosophi | yes | N/A | 0.415 | 0.717 | 0.934 | 1e-69 | |
| Q17031 | 191 | Cdc42 homolog OS=Anophele | yes | N/A | 0.415 | 0.717 | 0.934 | 1e-69 | |
| Q4R4R6 | 191 | Cell division control pro | N/A | N/A | 0.415 | 0.717 | 0.897 | 1e-66 | |
| Q8CFN2 | 191 | Cell division control pro | yes | N/A | 0.415 | 0.717 | 0.897 | 1e-66 | |
| Q007T2 | 191 | Cell division control pro | yes | N/A | 0.415 | 0.717 | 0.897 | 1e-66 | |
| P60766 | 191 | Cell division control pro | yes | N/A | 0.415 | 0.717 | 0.897 | 1e-66 | |
| P60953 | 191 | Cell division control pro | yes | N/A | 0.415 | 0.717 | 0.897 | 1e-66 | |
| P60952 | 191 | Cell division control pro | yes | N/A | 0.415 | 0.717 | 0.897 | 1e-66 |
| >sp|Q29HY3|CDC42_DROPS Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 263 bits (673), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 131/137 (95%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR++ TLEKLAKNKQKPI+ EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKC L
Sbjct: 175 AALEPPEPTKKRKCKFL 191
|
Regulates mbt kinase activity and is also required to recruit mbt to adheren junctions. Together with mbt, regulates photoreceptor cell morphogenesis. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|Q16YG0|CDC42_AEDAE Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 131/137 (95%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR++ TLEKLAKNKQKPI+ EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKC L
Sbjct: 175 AALEPPEPTKKRKCKFL 191
|
Regulates mbt kinase activity and is also required to recruit mbt to adheren junctions. Together with mbt, regulates photoreceptor cell morphogenesis. Aedes aegypti (taxid: 7159) |
| >sp|P40793|CDC42_DROME Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 131/137 (95%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR++ TLEKLAKNKQKPI+ EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKC L
Sbjct: 175 AALEPPEPTKKRKCKFL 191
|
Regulates mbt kinase activity and is also required to recruit mbt to adheren junctions. Together with mbt, regulates photoreceptor cell morphogenesis. Drosophila melanogaster (taxid: 7227) |
| >sp|Q17031|CDC42_ANOGA Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 131/137 (95%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR++ TLEKLAKNKQKPI+ EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKC L
Sbjct: 175 AALEPPEPTKKRKCRFL 191
|
Regulates mbt kinase activity and is also required to recruit mbt to adheren junctions. Together with mbt, regulates photoreceptor cell morphogenesis. Anopheles gambiae (taxid: 7165) |
| >sp|Q4R4R6|CDC42_MACFA Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/137 (89%), Positives = 129/137 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP K R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses. Involved in epithelial cell polarization processes. Regulates the bipolar attachment of spindle microtubules to kinetochores before chromosome congression in metaphase. Plays a role in the extension and maintenance of the formation of thin, actin-rich surface projections called filopodia. Mediates CDC42-dependent cell migration. Macaca fascicularis (taxid: 9541) |
| >sp|Q8CFN2|CDC42_RAT Cell division control protein 42 homolog OS=Rattus norvegicus GN=Cdc42 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/137 (89%), Positives = 129/137 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP K R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses. Involved in epithelial cell polarization processes. Regulates the bipolar attachment of spindle microtubules to kinetochores before chromosome congression in metaphase. Plays a role in the extension and maintenance of the formation of thin, actin-rich surface projections called filopodia. Mediates CDC42-dependent cell migration. Rattus norvegicus (taxid: 10116) |
| >sp|Q007T2|CDC42_PIG Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/137 (89%), Positives = 129/137 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP K R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses. Involved in epithelial cell polarization processes. Regulates the bipolar attachment of spindle microtubules to kinetochores before chromosome congression in metaphase. Plays a role in the extension and maintenance of the formation of thin, actin-rich surface projections called filopodia. Mediates CDC42-dependent cell migration. Sus scrofa (taxid: 9823) |
| >sp|P60766|CDC42_MOUSE Cell division control protein 42 homolog OS=Mus musculus GN=Cdc42 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/137 (89%), Positives = 129/137 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP K R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses. Involved in epithelial cell polarization processes. Regulates the bipolar attachment of spindle microtubules to kinetochores before chromosome congression in metaphase. Plays a role in the extension and maintenance of the formation of thin, actin-rich surface projections called filopodia. Mediates CDC42-dependent cell migration. Mus musculus (taxid: 10090) |
| >sp|P60953|CDC42_HUMAN Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/137 (89%), Positives = 129/137 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP K R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses. Involved in epithelial cell polarization processes. Regulates the bipolar attachment of spindle microtubules to kinetochores before chromosome congression in metaphase. Plays a role in the extension and maintenance of the formation of thin, actin-rich surface projections called filopodia. Mediates CDC42-dependent cell migration. Homo sapiens (taxid: 9606) |
| >sp|P60952|CDC42_CANFA Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/137 (89%), Positives = 129/137 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP K R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and an inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses. Involved in epithelial cell polarization processes. Regulates the bipolar attachment of spindle microtubules to kinetochores before chromosome congression in metaphase. Plays a role in the extension and maintenance of the formation of thin, actin-rich surface projections called filopodia. Mediates CDC42-dependent cell migration. Canis familiaris (taxid: 9615) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| 397485764 | 236 | PREDICTED: cell division control protein | 0.715 | 1.0 | 0.637 | 4e-82 | |
| 405976041 | 305 | Ras-related C3 botulinum toxin substrate | 0.724 | 0.783 | 0.493 | 3e-72 | |
| 242017492 | 191 | RAC GTPase, putative [Pediculus humanus | 0.415 | 0.717 | 0.956 | 1e-69 | |
| 46310188 | 191 | Rho family small GTP binding protein cdc | 0.415 | 0.717 | 0.956 | 3e-69 | |
| 187113154 | 191 | cell division cycle 42 [Acyrthosiphon pi | 0.415 | 0.717 | 0.956 | 4e-69 | |
| 340709714 | 191 | PREDICTED: cdc42 homolog [Bombus terrest | 0.415 | 0.717 | 0.927 | 1e-68 | |
| 156553330 | 191 | PREDICTED: cdc42 homolog [Nasonia vitrip | 0.415 | 0.717 | 0.934 | 1e-68 | |
| 241253290 | 191 | Cdc42 protein, putative [Ixodes scapular | 0.415 | 0.717 | 0.948 | 1e-68 | |
| 380025174 | 230 | PREDICTED: cdc42 homolog [Apis florea] | 0.415 | 0.595 | 0.934 | 2e-68 | |
| 383864007 | 191 | PREDICTED: cdc42 homolog [Megachile rotu | 0.415 | 0.717 | 0.934 | 2e-68 |
| >gi|397485764|ref|XP_003814010.1| PREDICTED: cell division control protein 42 homolog isoform 6 [Pan paniscus] gi|410032414|ref|XP_003949365.1| PREDICTED: cell division control protein 42 homolog [Pan troglodytes] gi|194384276|dbj|BAG64911.1| unnamed protein product [Homo sapiens] | Back alignment and taxonomy information |
|---|
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 172/270 (63%), Positives = 193/270 (71%), Gaps = 34/270 (12%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT+ + + V G+ G +AG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTLKNQWKVR---RGD---TGFARSAG 54
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
+++ R ++ + FG + WN + + P +TLG
Sbjct: 55 RQNSSRQ------DSNEWWSQFGEVC----PTSWNEVFDNYAVTVMIGGEP----YTLG- 99
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI
Sbjct: 100 -------------LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 146
Query: 241 THHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300
THHC KTPFLLVGTQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALT
Sbjct: 147 THHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT 206
Query: 301 QKGLKNVFDEAILAALEPPEPPKKRKCVLL 330
QKGLKNVFDEAILAALEPPEP K R+CVLL
Sbjct: 207 QKGLKNVFDEAILAALEPPEPKKSRRCVLL 236
|
Source: Pan paniscus Species: Pan paniscus Genus: Pan Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|405976041|gb|EKC40565.1| Ras-related C3 botulinum toxin substrate 1 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/308 (49%), Positives = 186/308 (60%), Gaps = 69/308 (22%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF-----GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKL 175
QEDYDRLRPLSYPQTDVFL+CF + NIR W+ H P
Sbjct: 61 QEDYDRLRPLSYPQTDVFLMCFSLISPASFENIRAK-----------WYPEVNHHCP-NA 108
Query: 176 HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---------------------- 213
T+ T ++ +RD DT + +L P++YPQ
Sbjct: 109 PTILVGTKLD---LRDDK--DTIEKLKEKKLSPITYPQGLALAKELGSVKYLECSALTQK 163
Query: 214 -------------------------TDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP 248
DVFL+CFS++SP+SFENV+ KW PE++HHC TP
Sbjct: 164 GLKMVFDEAIRAVLCPKPTKKTKKGCDVFLICFSLISPASFENVRAKWYPEVSHHCPNTP 223
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVGT++DLRED T+EKL + + PI++ QG +AKE+ AVKY+ECSALTQKGLKNVF
Sbjct: 224 IILVGTKLDLREDRETVEKLKEKRLAPITYPQGLAMAKEINAVKYLECSALTQKGLKNVF 283
Query: 309 DEAILAAL 316
DEAI A L
Sbjct: 284 DEAIRAVL 291
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|242017492|ref|XP_002429222.1| RAC GTPase, putative [Pediculus humanus corporis] gi|212514111|gb|EEB16484.1| RAC GTPase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/137 (95%), Positives = 133/137 (97%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+DA TLEKLAKNKQKPIS EQGEKL KELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDAATLEKLAKNKQKPISLEQGEKLHKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKC+LL
Sbjct: 175 AALEPPEPVKKRKCILL 191
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|46310188|gb|AAS87368.1| Rho family small GTP binding protein cdc42 [Rhopalosiphum padi] | Back alignment and taxonomy information |
|---|
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/137 (95%), Positives = 133/137 (97%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV PSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVLPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLREDA T+EKLAKNKQK ISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLREDATTVEKLAKNKQKSISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKCV+L
Sbjct: 175 AALEPPEPVKKRKCVIL 191
|
Source: Rhopalosiphum padi Species: Rhopalosiphum padi Genus: Rhopalosiphum Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|187113154|ref|NP_001119678.1| cell division cycle 42 [Acyrthosiphon pisum] gi|89473772|gb|ABD72698.1| putative Rho family small GTP binding protein cdc42 [Acyrthosiphon pisum] gi|239793497|dbj|BAH72861.1| ACYPI000070 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 131/137 (95%), Positives = 133/137 (97%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLREDA T+EKLAKNKQK IS EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLREDATTVEKLAKNKQKSISSEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKCV+L
Sbjct: 175 AALEPPEPVKKRKCVIL 191
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340709714|ref|XP_003393447.1| PREDICTED: cdc42 homolog [Bombus terrestris] gi|350420541|ref|XP_003492543.1| PREDICTED: cdc42 homolog [Bombus impatiens] gi|383864793|ref|XP_003707862.1| PREDICTED: cdc42 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/137 (92%), Positives = 134/137 (97%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+DA T+EKLAKNKQKPIS EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDAATIEKLAKNKQKPISAEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP ++R+C++L
Sbjct: 175 AALEPPEPVRRRRCIVL 191
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156553330|ref|XP_001602387.1| PREDICTED: cdc42 homolog [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 132/137 (96%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ+TPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQRTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQ+DLR+D T+EKLAKNKQKPIS EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQVDLRDDVATIEKLAKNKQKPISVEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEPPK RKC LL
Sbjct: 175 AALEPPEPPKGRKCFLL 191
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241253290|ref|XP_002403848.1| Cdc42 protein, putative [Ixodes scapularis] gi|215496569|gb|EEC06209.1| Cdc42 protein, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/137 (94%), Positives = 133/137 (97%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV+EKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVREKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+DA TLEKLAKNKQKPIS EQG+KLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDAATLEKLAKNKQKPISNEQGDKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KRKCVLL
Sbjct: 175 AALEPPEPKPKRKCVLL 191
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380025174|ref|XP_003696353.1| PREDICTED: cdc42 homolog [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 131/137 (95%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC +TPFLLVG
Sbjct: 94 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPRTPFLLVG 153
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPIS EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 154 TQIDLRDDVATIEKLAKNKQKPISAEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 213
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKC LL
Sbjct: 214 AALEPPEPVKKRKCTLL 230
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383864007|ref|XP_003707471.1| PREDICTED: cdc42 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 132/137 (96%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ+TPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQRTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T EKLAKNKQKPIS EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 115 TQIDLRDDVATTEKLAKNKQKPISAEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 AALEPPEPPKKRKCVLL 330
AALEPPEP KKRKC++L
Sbjct: 175 AALEPPEPVKKRKCIIL 191
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| UNIPROTKB|Q29HY3 | 191 | Cdc42 "Cdc42 homolog" [Drosoph | 0.415 | 0.717 | 0.854 | 3.9e-87 | |
| UNIPROTKB|Q16YG0 | 191 | Cdc42 "Cdc42 homolog" [Aedes a | 0.415 | 0.717 | 0.854 | 5e-87 | |
| FB|FBgn0010341 | 191 | Cdc42 "Cdc42" [Drosophila mela | 0.415 | 0.717 | 0.854 | 6.4e-87 | |
| ZFIN|ZDB-GENE-030131-8783 | 191 | cdc42 "cell division cycle 42" | 0.415 | 0.717 | 0.832 | 3.1e-85 | |
| UNIPROTKB|G1K300 | 193 | CDC42 "Cell division control p | 0.415 | 0.709 | 0.824 | 5e-85 | |
| UNIPROTKB|Q90694 | 191 | CDC42 "Cell division control p | 0.415 | 0.717 | 0.824 | 5e-85 | |
| UNIPROTKB|Q2KJ93 | 191 | CDC42 "Cell division control p | 0.415 | 0.717 | 0.824 | 5e-85 | |
| UNIPROTKB|P60952 | 191 | CDC42 "Cell division control p | 0.415 | 0.717 | 0.824 | 5e-85 | |
| UNIPROTKB|P60953 | 191 | CDC42 "Cell division control p | 0.415 | 0.717 | 0.824 | 5e-85 | |
| UNIPROTKB|Q007T2 | 191 | CDC42 "Cell division control p | 0.415 | 0.717 | 0.824 | 5e-85 |
| UNIPROTKB|Q29HY3 Cdc42 "Cdc42 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 117/137 (85%), Positives = 120/137 (87%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR++ TLEKLAKNKQKPI+ EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
RKC L
Sbjct: 175 AALEPPEPTKKRKCKFL 191
|
|
| UNIPROTKB|Q16YG0 Cdc42 "Cdc42 homolog" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 117/137 (85%), Positives = 120/137 (87%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR++ TLEKLAKNKQKPI+ EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
RKC L
Sbjct: 175 AALEPPEPTKKRKCKFL 191
|
|
| FB|FBgn0010341 Cdc42 "Cdc42" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 6.4e-87, Sum P(2) = 6.4e-87
Identities = 117/137 (85%), Positives = 120/137 (87%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR++ TLEKLAKNKQKPI+ EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
RKC L
Sbjct: 175 AALEPPEPTKKRKCKFL 191
|
|
| ZFIN|ZDB-GENE-030131-8783 cdc42 "cell division cycle 42" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 114/137 (83%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
RKCVLL
Sbjct: 175 AALEPPEPKKKRKCVLL 191
|
|
| UNIPROTKB|G1K300 CDC42 "Cell division control protein 42 homolog" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 176
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 177 AALEPPEPKKTRRCVLL 193
|
|
| UNIPROTKB|Q90694 CDC42 "Cell division control protein 42 homolog" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 175 AALEPPEPKKTRRCVLL 191
|
|
| UNIPROTKB|Q2KJ93 CDC42 "Cell division control protein 42 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
|
| UNIPROTKB|P60952 CDC42 "Cell division control protein 42 homolog" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
|
| UNIPROTKB|P60953 CDC42 "Cell division control protein 42 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
|
| UNIPROTKB|Q007T2 CDC42 "Cell division control protein 42 homolog" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P34144 | RAC1A_DICDI | No assigned EC number | 0.6666 | 0.3636 | 0.6185 | yes | N/A |
| Q2KJ93 | CDC42_BOVIN | No assigned EC number | 0.8978 | 0.4151 | 0.7172 | yes | N/A |
| Q9HF56 | CDC42_ASHGO | No assigned EC number | 0.7445 | 0.3484 | 0.6020 | yes | N/A |
| Q01112 | CDC42_SCHPO | No assigned EC number | 0.7536 | 0.4151 | 0.7135 | yes | N/A |
| Q16YG0 | CDC42_AEDAE | No assigned EC number | 0.9343 | 0.4151 | 0.7172 | N/A | N/A |
| P40793 | CDC42_DROME | No assigned EC number | 0.9343 | 0.4151 | 0.7172 | yes | N/A |
| P19073 | CDC42_YEAST | No assigned EC number | 0.7372 | 0.3484 | 0.6020 | yes | N/A |
| Q007T2 | CDC42_PIG | No assigned EC number | 0.8978 | 0.4151 | 0.7172 | yes | N/A |
| Q17031 | CDC42_ANOGA | No assigned EC number | 0.9343 | 0.4151 | 0.7172 | yes | N/A |
| Q8CFN2 | CDC42_RAT | No assigned EC number | 0.8978 | 0.4151 | 0.7172 | yes | N/A |
| P60766 | CDC42_MOUSE | No assigned EC number | 0.8978 | 0.4151 | 0.7172 | yes | N/A |
| P60952 | CDC42_CANFA | No assigned EC number | 0.8978 | 0.4151 | 0.7172 | yes | N/A |
| P60953 | CDC42_HUMAN | No assigned EC number | 0.8978 | 0.4151 | 0.7172 | yes | N/A |
| Q90694 | CDC42_CHICK | No assigned EC number | 0.8978 | 0.4151 | 0.7172 | yes | N/A |
| Q05062 | CDC42_CAEEL | No assigned EC number | 0.8467 | 0.4151 | 0.7172 | yes | N/A |
| Q29HY3 | CDC42_DROPS | No assigned EC number | 0.9343 | 0.4151 | 0.7172 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 330 | |||
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 7e-85 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 8e-80 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 1e-75 | |
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 1e-71 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 5e-62 | |
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 3e-60 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 4e-60 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 2e-59 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 3e-59 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 1e-55 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 9e-55 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 9e-54 | |
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 2e-51 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 9e-43 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 1e-42 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 3e-42 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 7e-42 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 3e-41 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 5e-39 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 7e-39 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 1e-38 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 8e-38 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 7e-37 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 1e-36 | |
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 5e-35 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 8e-35 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 1e-32 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 2e-32 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 2e-30 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 2e-29 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 5e-29 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 4e-27 | |
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 7e-27 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 8e-27 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 5e-25 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 5e-25 | |
| cd01873 | 195 | cd01873, RhoBTB, RhoBTB protein is an atypical mem | 7e-25 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 3e-23 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 5e-23 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 5e-23 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 7e-23 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 1e-22 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 2e-21 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 3e-21 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 8e-21 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 1e-20 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 6e-20 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 7e-20 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 3e-19 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 7e-19 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 8e-19 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 6e-17 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 7e-17 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 5e-16 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 5e-16 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 3e-15 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 4e-15 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 8e-15 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 9e-14 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 1e-13 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-13 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 2e-13 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 5e-13 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 9e-13 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 1e-12 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 1e-12 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-12 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 2e-12 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 3e-12 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 4e-12 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 5e-12 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 5e-12 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 1e-11 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 3e-11 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 3e-11 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 7e-11 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 8e-11 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 9e-11 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-10 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 2e-10 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 2e-10 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 2e-10 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 3e-10 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 4e-10 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 4e-10 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 6e-10 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 7e-10 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-09 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 1e-09 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 1e-09 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 1e-09 | |
| cd01873 | 195 | cd01873, RhoBTB, RhoBTB protein is an atypical mem | 2e-09 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 2e-09 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 2e-09 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 3e-09 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 3e-09 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 4e-09 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 4e-09 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 4e-09 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 4e-09 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 6e-09 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 8e-09 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 8e-09 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 1e-08 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 2e-08 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-08 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 2e-08 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 2e-08 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 4e-08 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 4e-08 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 7e-08 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 7e-08 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 8e-08 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 9e-08 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 1e-07 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 1e-07 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 1e-07 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 1e-07 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 2e-07 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 2e-07 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 2e-07 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 2e-07 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 2e-07 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 3e-07 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 3e-07 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 3e-07 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 3e-07 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 4e-07 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 4e-07 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 5e-07 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 5e-07 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 7e-07 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 8e-07 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 9e-07 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 9e-07 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 1e-06 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 1e-06 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 1e-06 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 1e-06 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 1e-06 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 1e-06 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 1e-06 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 1e-06 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 1e-06 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 2e-06 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 2e-06 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 3e-06 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 4e-06 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 4e-06 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 5e-06 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 6e-06 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 7e-06 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 7e-06 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 8e-06 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 1e-05 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 1e-05 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 1e-05 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 1e-05 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 1e-05 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 2e-05 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 2e-05 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 2e-05 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 2e-05 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 3e-05 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 3e-05 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 3e-05 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 3e-05 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 3e-05 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 4e-05 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 5e-05 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 5e-05 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 5e-05 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 5e-05 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 5e-05 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 6e-05 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 9e-05 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-04 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 1e-04 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 1e-04 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 1e-04 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 2e-04 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 2e-04 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 2e-04 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-04 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 2e-04 | |
| cd01892 | 180 | cd01892, Miro2, Mitochondrial Rho family 2 (Miro2) | 2e-04 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 3e-04 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 3e-04 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 3e-04 | |
| cd01873 | 195 | cd01873, RhoBTB, RhoBTB protein is an atypical mem | 4e-04 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 5e-04 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 5e-04 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 6e-04 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 6e-04 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 6e-04 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 6e-04 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 6e-04 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 7e-04 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 8e-04 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 0.001 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 0.001 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 0.002 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 0.002 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 0.002 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 0.002 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 0.002 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 0.002 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 0.003 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 0.003 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 0.003 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 0.003 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 0.004 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 0.004 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 0.004 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 253 bits (647), Expect = 7e-85
Identities = 113/123 (91%), Positives = 118/123 (95%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 53 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 112
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D T+EKLAKNKQKPI+ E GEKLA++LKAVKYVECSALTQKGLKNVFDEAIL
Sbjct: 113 TQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172
Query: 314 AAL 316
AAL
Sbjct: 173 AAL 175
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 8e-80
Identities = 85/126 (67%), Positives = 105/126 (83%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYP TDVFL+CFSV SP+SFENVKEKW PE+ H C P +LV
Sbjct: 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILV 108
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR D TLE+L+K KQ+P+++EQG+ LAK + AVKY+ECSALTQ+G++ VF+EAI
Sbjct: 109 GTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAI 168
Query: 313 LAALEP 318
AAL
Sbjct: 169 RAALNK 174
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 1e-75
Identities = 91/122 (74%), Positives = 104/122 (85%), Gaps = 1/122 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQE+YDRLRPLSYPQTDVFL+CFSV SPSSFENVK KW PEI H+C P +LV
Sbjct: 51 GLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILV 110
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT+IDLR+D TL+KL K QKPI+ E+GEKLAKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 111 GTKIDLRDDGNTLKKLEKK-QKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAI 169
Query: 313 LA 314
A
Sbjct: 170 RA 171
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 1e-71
Identities = 85/122 (69%), Positives = 103/122 (84%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 52 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 112 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171
Query: 313 LA 314
A
Sbjct: 172 RA 173
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 5e-62
Identities = 73/122 (59%), Positives = 94/122 (77%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L DTAGQ+++D+LRPL YP TDVFL+CFSVV+PSSF+N+ EKW+PEI H K P +LVG
Sbjct: 52 LCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVG 111
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQ DLR D L +LA+ +KP+S + + LA+++ A +Y+ECSALTQK LK VFD AIL
Sbjct: 112 TQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171
Query: 314 AA 315
A
Sbjct: 172 AG 173
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 3e-60
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 122
TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE
Sbjct: 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 60
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
DYDRLRPLSYPQTDVFLVCF
Sbjct: 61 DYDRLRPLSYPQTDVFLVCF 80
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 4e-60
Identities = 72/142 (50%), Positives = 96/142 (67%), Gaps = 5/142 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYP DV L+C+SV +P+S +NV++KW PE+ H C TP +LVG
Sbjct: 56 LWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ DLR+D ++ KL +P++ EQGE +AK + AV Y+ECSA + + VFD AI
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAIN 175
Query: 314 AALEPPEPP-----KKRKCVLL 330
AL KK+KCV+L
Sbjct: 176 VALSKSGRAARKKKKKKKCVIL 197
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 188 bits (478), Expect = 2e-59
Identities = 87/123 (70%), Positives = 104/123 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYP TDVFL+CFSVV+P+SF+NVKE+WVPE+ + P+LL+G
Sbjct: 52 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIG 111
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
TQIDLR+D TL +L K+KPI+ EQG+KLAKE+ A YVECSALTQKGLK VFDEAI+
Sbjct: 112 TQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 171
Query: 314 AAL 316
A L
Sbjct: 172 AIL 174
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-59
Identities = 83/138 (60%), Positives = 104/138 (75%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQE+YDRLR LSYPQT+VF++CFS+ SPSS+ENV+ KW PE+ HHC P LLV
Sbjct: 54 NLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLV 113
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT+ DLR DA TL+KL + Q PI+ +QG LAK++ AVKY+ECSAL Q G+K VF EA+
Sbjct: 114 GTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAV 173
Query: 313 LAALEPPEPPKKRKCVLL 330
A L P + CVLL
Sbjct: 174 RAVLNPTPIKDTKSCVLL 191
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 1e-55
Identities = 64/79 (81%), Positives = 71/79 (89%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
IK VVVGDGAVGKTCLLISYTTNKFP+EYVPTVFDNY+ V + G+ LGL+DTAGQE+
Sbjct: 1 IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YDRLRPLSYPQTDVFL+CF
Sbjct: 61 YDRLRPLSYPQTDVFLLCF 79
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 9e-55
Identities = 69/124 (55%), Positives = 92/124 (74%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR D T+ +LAK KQ+P+ E+G +A+++ A Y+ECSA T++G++ VF+ A
Sbjct: 112 GNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMAT 171
Query: 313 LAAL 316
AAL
Sbjct: 172 RAAL 175
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 9e-54
Identities = 59/77 (76%), Positives = 66/77 (85%)
Query: 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD 125
VVVGDGAVGKTCLLI YTTN FP +YVPTVF+NY+ V + G+P LGL+DTAGQEDYD
Sbjct: 1 LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60
Query: 126 RLRPLSYPQTDVFLVCF 142
RLRPLSYP TDVFL+CF
Sbjct: 61 RLRPLSYPDTDVFLICF 77
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-51
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQED
Sbjct: 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YDRLRPLSYPQTDVFL+CF
Sbjct: 62 YDRLRPLSYPQTDVFLICF 80
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 9e-43
Identities = 59/82 (71%), Positives = 69/82 (84%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ+IKCVVVGDGAVGKTCLLI YTTN FP EY+PTVFDNY+ + G +L L+DTAG
Sbjct: 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE+YDRLR LSYPQT+VF++CF
Sbjct: 61 QEEYDRLRTLSYPQTNVFIICF 82
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 1e-42
Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL+DTAGQED
Sbjct: 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YDRLRPLSYP TDVFL+CF
Sbjct: 61 YDRLRPLSYPMTDVFLICF 79
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-42
Identities = 50/80 (62%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLFDTAGQE 122
+K VVVGDG GKTCLL+ Y FP EYVPTVF+NY T+ + G+ L L+DTAGQE
Sbjct: 4 VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
DYDRLRPLSYP DV L+C+
Sbjct: 64 DYDRLRPLSYPDVDVILICY 83
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-42
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW E+ C TP LLV
Sbjct: 52 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEA 311
G + DLR D TL +L+ +Q P+S EQG LAK++ A YVECSA T + +++VF+ A
Sbjct: 112 GCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171
Query: 312 ILAAL 316
LA L
Sbjct: 172 TLACL 176
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-41
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 15/125 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAGQE + LRPL Y FL+ + + S SFENVK KW+ EI H + P +LV
Sbjct: 52 IWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVK-KWLEEILRHADENVPIVLV 110
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DL + Q+ +S E+GE LAKEL + ++E SA T + ++ F+E
Sbjct: 111 GNKCDLED------------QRVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELA 157
Query: 313 LAALE 317
L+
Sbjct: 158 REILK 162
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 5e-39
Identities = 54/124 (43%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQE+Y+RLRPLSY + V L+ F++ +P S ENV+ KW+ E+ +C P +LV
Sbjct: 52 ALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR++A A + + +Q + +A+ + A KY+ECSALT +G+ +VF+ A
Sbjct: 112 GLKKDLRQEAVAKGNYA--TDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAAT 169
Query: 313 LAAL 316
AAL
Sbjct: 170 RAAL 173
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-39
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DTAGQE++DRLR LSY T V ++CFSV +P S ENV+ KW+ EI HHC +LV
Sbjct: 51 SLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLV 110
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA- 311
+ DLRE IS+E+G +AK + A +Y+ECSA +G+ F EA
Sbjct: 111 ALKCDLREP----RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAA 166
Query: 312 -ILAALEPPEPPKKRKCV 328
+ PP P + +
Sbjct: 167 RVALNARPPHPHSRACTI 184
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-38
Identities = 52/79 (65%), Positives = 68/79 (86%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+KCV+VGDGAVGKT L++SYTTN +P+EYVPT FDN++V V++ G+P L L DTAGQ++
Sbjct: 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+D+LRPL YP TDVFL+CF
Sbjct: 61 FDKLRPLCYPDTDVFLLCF 79
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 8e-38
Identities = 55/79 (69%), Positives = 66/79 (83%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 2 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 61
Query: 124 YDRLRPLSYPQTDVFLVCF 142
Y+RLRPLSY DVFL+ F
Sbjct: 62 YNRLRPLSYRGADVFLLAF 80
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 7e-37
Identities = 61/119 (51%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDY+RLRPLSY DVFL+ FS++S +S+ENV +KW+PE+ H+ P +LVG
Sbjct: 53 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVG 112
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D PI+ QGE+L K++ A Y+ECS+ TQ+ +K VFD AI
Sbjct: 113 TKLDLRDDKQFF--ADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-36
Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG VGK+ LLI +T NKFP EY+PT+ D Y T+ + G+ L ++DTAGQE
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ LRPL Y FL+ +
Sbjct: 61 FRALRPLYYRGAQGFLLVY 79
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 5e-35
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 53
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 8e-35
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 63 DRLRPLSYPDTDVILMCF 80
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-32
Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPL Y +D L+CF + P F++ +KW EI +C T LL+
Sbjct: 64 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLI 123
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEA 311
G + DLR D TL +L+ KQ PIS+EQG +AK+L A Y+ECSA T +K + ++F A
Sbjct: 124 GCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTA 183
Query: 312 ILAALEPPEPPKKR 325
L + P K+
Sbjct: 184 SLLCINKLSPLAKK 197
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-32
Identities = 54/125 (43%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 56 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 116 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175
Query: 312 ILAAL 316
LA +
Sbjct: 176 TLACV 180
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-30
Identities = 40/52 (76%), Positives = 44/52 (84%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
IK VVVGDGAVGKTCLLISYTTNKFP+EYVPTVFDNY+ V + G+ LGL
Sbjct: 1 IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGL 52
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-29
Identities = 51/134 (38%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+++DT+G YD +RPL+YP +D L+CF + P + ++V +KW E C +LV
Sbjct: 52 NMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA-LTQKGLKNVFDEA 311
G ++D+R D TL +L+K + P++ EQG LA++L AV YVECS+ +++ +++VF
Sbjct: 112 GCKLDMRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVT 171
Query: 312 ILAALEPPEPPKKR 325
LA++ P KR
Sbjct: 172 TLASVRREHPSLKR 185
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 5e-29
Identities = 44/78 (56%), Positives = 55/78 (70%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKT LL +T +FP EY PTVF+NY + G+P L L+DTAGQE+Y
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
+RLRPLSY + V L+ F
Sbjct: 63 ERLRPLSYSKAHVILIGF 80
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-27
Identities = 35/50 (70%), Positives = 40/50 (80%)
Query: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
VVVGDGAVGKTCLLI YTTN FP +YVPTVF+NY+ V + G+P LGL
Sbjct: 1 LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGL 50
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-27
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 53
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-27
Identities = 36/82 (43%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAG 120
IK V+VGD VGK+ LL NK +EY P NY T + G+ Y L DTAG
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QEDYD +R L Y + L F
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVF 82
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 5e-25
Identities = 37/79 (46%), Positives = 49/79 (62%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGD GKT LL + + FP YVPTVF+NY + + + L L+DT+G
Sbjct: 2 CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YD +RPLSYP +D L+CF
Sbjct: 62 YDNVRPLSYPDSDAVLICF 80
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 5e-25
Identities = 42/78 (53%), Positives = 52/78 (66%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+GDGA GKT LL +T FP Y PTVF+NY + + G L L+DTAGQE++
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLR LSY T V ++CF
Sbjct: 62 DRLRSLSYADTHVIMLCF 79
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 7e-25
Identities = 58/135 (42%), Positives = 79/135 (58%), Gaps = 11/135 (8%)
Query: 188 WVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT 247
V R L+DT G D+D+ R +Y ++DV L+CFS+ SP+S NVK W PEI H C +
Sbjct: 65 SVSLR-LWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRV 121
Query: 248 PFLLVGTQIDLR-----EDAPTLEKLAKNKQKP--ISFEQGEKLAKELKAVKYVECSALT 300
P +LVG ++DLR E LA+ + + E G +AKEL + Y E S +T
Sbjct: 122 PVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKEL-GIPYYETSVVT 180
Query: 301 QKGLKNVFDEAILAA 315
Q G+K+VFD AI AA
Sbjct: 181 QFGVKDVFDNAIRAA 195
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 3e-23
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y ++ + V + SFEN+ KW+ E+ + P +LV
Sbjct: 53 IWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLD-KWLNELKEYAPPNIPIILV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DL + ++ +S E+ ++ AKE + E SA T + + F+
Sbjct: 112 GNKSDLED------------ERQVSTEEAQQFAKENGL-LFFETSAKTGENVDEAFESLA 158
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 5e-23
Identities = 38/55 (69%), Positives = 43/55 (78%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ+IKCVVVGDGAVGKTCLLI YTTN FP EY+PTVFDNY+ + G +L L
Sbjct: 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNL 55
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 5e-23
Identities = 42/109 (38%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP-SSFENVKEKWVPEITHHC-QKTPFLL 251
L DTAGQEDYD +R L Y + L F +V E + EK EI HH P +L
Sbjct: 55 LLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIIL 114
Query: 252 VGTQIDLREDAPTLEK----LAKNKQKPISFEQGEKLAKELKAVKYVEC 296
VG +IDLR DA AK +PI E A K VE
Sbjct: 115 VGNKIDLR-DAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 7e-23
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 155 NRKLGGWFWFISTEHSPPMKL-HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
NR +G F E PP L+DTAGQE+Y LRP Y
Sbjct: 23 NRLVGDEF----PEGYPPTIGNLDPAKTIEPYRR-NIKLQLWDTAGQEEYRSLRPEYYRG 77
Query: 214 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAK-- 270
+ L+ + S + + E+W+ E+ P LLVG +IDL ++ + E++
Sbjct: 78 ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQL 137
Query: 271 NKQKPISFEQGEKLAKELKAVKYVECSA--LTQKGLKNVFDEAILAALEPPEP 321
N++ + + + E+ +E SA LT + +F E + LE E
Sbjct: 138 NREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEK 190
|
Length = 219 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 1e-22
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDT 118
M+ K VV+GDG VGKT LL ++FP Y PT+ + A T+ L L+DT
Sbjct: 2 FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK 157
AGQE+Y LRP Y + L+ + + +R S D +
Sbjct: 62 AGQEEYRSLRPEYYRGANGILIVYDST--LRESSDELTE 98
|
Length = 219 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-21
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 62 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+
Sbjct: 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 61
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
G YD +RPLSYP +D L+CF +I R + L W I E P K+ +G
Sbjct: 62 GSPYYDNVRPLSYPDSDAVLICF----DISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 116
Query: 180 FITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
+++ R+ T + R P+SY Q
Sbjct: 117 CKSDL-------RTDVSTLVELSNHRQTPVSYDQ 143
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 3e-21
Identities = 38/52 (73%), Positives = 45/52 (86%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL
Sbjct: 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 52
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 8e-21
Identities = 35/52 (67%), Positives = 43/52 (82%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL
Sbjct: 2 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGL 53
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 1e-20
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+G G VGK+ L I + + +F EY PT+ D+Y +++ GE YTL + DTAGQE++
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R D F++ +
Sbjct: 61 SAMRDQYIRNGDGFILVY 78
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-20
Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGL 55
+K VVVGDG GKTCLL+ Y FP EYVPTVF+NY T+ + G+ L L
Sbjct: 4 VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELAL 56
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 7e-20
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K V++GD VGKT LL+ + NKF Y T+ ++ T+ + G+ L ++DTAGQE
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ + Y ++ +
Sbjct: 61 RFRSITSSYYRGAHGAILVY 80
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-19
Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+KCV+VGDGAVGKT L++SYTTN +P+EYVPT FDN++V V++ G+P L L
Sbjct: 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQL 52
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 7e-19
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGL 55
K V+VGDG VGK+ LLI +T NKFP EY+PT+ D Y T+ + G+ L +
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQI 52
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 8e-19
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VVVGD GKT LL + + +P YVPTVF+NY + I L ++DT+G Y
Sbjct: 3 KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
D +RPL+YP +D L+CF
Sbjct: 63 DNVRPLAYPDSDAVLICF 80
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 6e-17
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+G G VGK+ L I + F +Y PT+ D+Y + I GE L + DTAGQE++
Sbjct: 2 KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + FL+ +
Sbjct: 62 SAMRDQYMRTGEGFLLVY 79
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 7e-17
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+G G VGK+ L I + F EY PT+ D+Y + I GE L + DTAGQE++
Sbjct: 4 KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + FL+ +
Sbjct: 64 SAMRDQYMRTGEGFLLVY 81
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 5e-16
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
Query: 194 LFDTAGQEDYDRLRP-----LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP 248
L DT G +++ L L D+ L+ S E+ K + + P
Sbjct: 51 LVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLIL--RRLRKEGIP 108
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG +IDL E+ E L + ++ V E SA T +G+ +F
Sbjct: 109 IILVGNKIDLLEEREVEELLR------------LEELAKILGVPVFEVSAKTGEGVDELF 156
Query: 309 DEAI 312
++ I
Sbjct: 157 EKLI 160
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 5e-16
Identities = 32/64 (50%), Positives = 39/64 (60%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y
Sbjct: 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62
Query: 125 DRLR 128
+R
Sbjct: 63 SAMR 66
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 3e-15
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAGQE + + Y L+ + + + SFEN++ W+ E+ + +LV
Sbjct: 53 IWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLE-NWLKELREYASPNVVIMLV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL E Q+ +S E+ E A+E + + E SA T ++ F+E
Sbjct: 112 GNKSDLEE------------QRQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEAFEE 156
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 4e-15
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE-----KWVPEITHHCQKTPFL 250
DTAGQE++ +R D F++ +S+ S SFE +K V + + P +
Sbjct: 53 DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKD----KEDVPIV 108
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
LVG + DL ++ +S E+GE LA+E ++E SA T + +F+
Sbjct: 109 LVGNKCDL------------ENERQVSTEEGEALAEEWG-CPFLETSAKTNINIDELFNT 155
Query: 311 AI 312
+
Sbjct: 156 LV 157
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 8e-15
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGD GKT +L + +P YVPTVF+NY + + L L+DT+G Y
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74
Query: 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184
D +RPL Y +D L+CF +I R ++ L W I ++ P ++ +G T++
Sbjct: 75 DNVRPLCYSDSDAVLLCF----DISRPEIFDSALKKWRAEI-LDYCPSTRILLIGCKTDL 129
Query: 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---------TDVFLVCFSVVSPSSFENV 232
R+ T + + P+SY Q + +L C + S S ++
Sbjct: 130 -------RTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSI 179
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 9e-14
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+GDG VGKT L I N F Y PT+ D+Y V++ G+P L + DTAGQE+Y
Sbjct: 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60
Query: 125 DRLRPLSYPQTDVFLVCF 142
LR + + F++ +
Sbjct: 61 TALRDQWIREGEGFILVY 78
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-13
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+ LL +T KF +Y T+ ++ T+ + G+ L ++DTAGQE
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60
Query: 123 DY 124
+
Sbjct: 61 RF 62
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-13
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 183 NINPGWVR-DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241
+N G R D +++DTAGQE Y L P+ Y D ++ + + SF+ VK KW+ E+
Sbjct: 41 TVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVK-KWIKELK 99
Query: 242 HHCQKTPFL-LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300
L +VG +IDL Q+ +S + E+ AK + A K+ E SA T
Sbjct: 100 QMRGNNISLVIVGNKIDLER------------QRVVSKSEAEEYAKSVGA-KHFETSAKT 146
Query: 301 QKGLKNVFD 309
KG++ +F
Sbjct: 147 GKGIEELFL 155
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-13
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 31/147 (21%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDV--FLVCFSVVSPSSFENVK---EKWVPEITHHCQKT- 247
+ DTAGQ++Y L P Y + +++ +SV S SFE VK +K I K
Sbjct: 53 IVDTAGQDEYSIL-PQKY-SIGIHGYILVYSVTSRKSFEVVKVIYDK----ILDMLGKES 106
Query: 248 -PFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKN 306
P +LVG + DL ++ +S E+G+KLA+ A ++E SA + ++
Sbjct: 107 VPIVLVGNKSDLH------------MERQVSAEEGKKLAESWGA-AFLESSAKENENVEE 153
Query: 307 VFDEAILAALE----PPEPPKKRKCVL 329
F E ++ +E P P +K KC +
Sbjct: 154 AF-ELLIEEIEKVENPLPPGQKSKCSV 179
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-13
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 53
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-13
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKT LL +T +FP EY PTVF+NY + G+P L L
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLAL 53
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQE++ +R + FL+ +S+ SFE +K K+ +I P +LVG
Sbjct: 54 DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIK-KFREQILRVKDRDDVPIVLVG 112
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+ DL ++ +S E+G++LA++ ++E SA + + F
Sbjct: 113 NKCDLES------------ERVVSTEEGKELARQWG-CPFLETSAKERVNVDEAF 154
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-12
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE L + DTAGQEDY
Sbjct: 2 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61
Query: 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVD 153
+R + + FL+ F + S
Sbjct: 62 AAIRDNYFRSGEGFLLVFS--ITDMESFT 88
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-12
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVT-VMIGGEPYTLGL 55
IK V+VGD VGK+ LL NK +EY P NY T + G+ Y L
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNL 55
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K V++G+G VGKT L++ Y NKF ++ T ++ TV IGG+ L ++DTAGQE
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
Y L P+ Y D ++ +
Sbjct: 61 RYHALGPIYYRDADGAILVY 80
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-12
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
T K VVVG G VGK+ L I + + F ++Y PT+ D+Y I G+ L + DTAGQ
Sbjct: 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQ 60
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158
E++ +R + FL+ F + R S + K
Sbjct: 61 EEFSAMREQYMRTGEGFLLVFS--VTDRGSFEEVDKF 95
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 4e-12
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQE++ +R + FL+ +S+ SFE + K+ +I P +LVG
Sbjct: 56 DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIA-KFREQILRVKDRDDVPIVLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+ DL ++ +S E+G++LA++ ++E SA + + F
Sbjct: 115 NKCDLEN------------ERVVSTEEGKELARQWG-CPFLETSAKERINVDEAF 156
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-12
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 18/125 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQ-TDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLL 251
L+DTAGQE + L P SY + + V +V + + + SF+N +KW+ ++ +L
Sbjct: 53 LWDTAGQERFRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVL 110
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
VG + DL + ++ +S E+GEK AKE A ++E SA +K +F +
Sbjct: 111 VGNKTDLSD------------KRQVSTEEGEKKAKENNA-MFIETSAKAGHNVKQLFKK- 156
Query: 312 ILAAL 316
I AL
Sbjct: 157 IAQAL 161
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-12
Identities = 30/68 (44%), Positives = 38/68 (55%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
K VVVG G VGK+ L I + N F EY PT+ D+Y +I E L + DTAG
Sbjct: 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAG 62
Query: 121 QEDYDRLR 128
QE+Y +R
Sbjct: 63 QEEYSAMR 70
|
Length = 189 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-11
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGT 254
DTAGQE Y L P+ Y +V + + S SFE K WV E+ H L G
Sbjct: 56 DTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAK-SWVKELQEHGPPNIVIALAGN 114
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ +S E+ ++ A E + ++E SA T + + +F E
Sbjct: 115 KADLES------------KRQVSTEEAQEYADENGLL-FMETSAKTGENVNELFTE 157
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-11
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VV+G G VGK+ L I + + +F EY PT+ D+Y +++ GE YTL +
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDI 51
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-11
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
+K +++GDG VGK+ L+ Y TNKF ++ T+ F N + V G TL ++DTAG
Sbjct: 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV--DGHFVTLQIWDTAG 63
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161
QE + LR Y +D L+ F ++ +S + L W
Sbjct: 64 QERFRSLRTPFYRGSDCCLLTFS--VDDSQSF---QNLSNW 99
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-11
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V++G G VGK+ + + + ++ FP + PT+ D Y I EP L + DTAGQ ++
Sbjct: 4 KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAEF 63
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + F++C+
Sbjct: 64 TAMRDQYMRCGEGFIICY 81
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-11
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-----KTP 248
++DTAGQE + L Y D ++ + V +P SFE++ + W E P
Sbjct: 53 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFP 111
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
F+++G +IDL E ++ +S ++ ++ K + Y E SA + F
Sbjct: 112 FVVLGNKIDLEE------------KRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAF 159
Query: 309 DEAILAALE 317
+ ALE
Sbjct: 160 ETIARLALE 168
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-11
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 21/133 (15%)
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240
I+ W R + DTAGQE++ +R + FL+ FSV SFE V K+ +I
Sbjct: 42 QCEIDGQWAR-LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVD-KFHTQI 99
Query: 241 --THHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
+ P +LVG + DL Q+ +S E+G++LA++LK + Y+E SA
Sbjct: 100 LRVKDRDEFPMILVGNKADLEH------------QRQVSREEGQELARQLK-IPYIETSA 146
Query: 299 LTQKGLKNVFDEA 311
K NV D+A
Sbjct: 147 ---KDRVNV-DKA 155
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+ LL+ +T + F + T+ ++ V TV + G+ L ++DTAGQE
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60
Query: 123 DYDRLRPL--SY 132
R R L SY
Sbjct: 61 ---RFRTLTSSY 69
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 2e-10
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K V++GD VGKT LL+ + NKF Y T+ ++ T+ + G+ L
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKL 51
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-10
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+G G VGK+ L + + + F +Y PT+ D Y + + P L + DTAG E +
Sbjct: 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R L F+V +
Sbjct: 63 ASMRDLYIKNGQGFIVVY 80
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
IK +VVG+G VGK+ ++ + F +Y T+ F + + E L L+DTAG
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60
Query: 121 QEDYDRLRPLSY 132
QE++D + Y
Sbjct: 61 QEEFDAITKAYY 72
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-10
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+G G VGK+ L + + N F Y PT+ D+Y V I G L + DTAG E +
Sbjct: 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R L FL+ +
Sbjct: 63 TAMRELYIKSGQGFLLVY 80
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-10
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 31/154 (20%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT----HHCQKTPF 249
+ DTAGQE+Y LR + + F++ +S+ S S+FE V E++ +I P
Sbjct: 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPI 109
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
++VG + D K ++ +S E+G LA+ L +++E SA T ++ F
Sbjct: 110 MIVGNKCD------------KVYEREVSTEEGAALARRL-GCEFIEASAKTNVNVERAFY 156
Query: 310 EAILA-----------ALEPPEPP--KKRKCVLL 330
+ A P + KKRKCV++
Sbjct: 157 TLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-10
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
+ DTAGQEDY +R + + FL+ FS+ SF + E + P LLV
Sbjct: 52 ILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL + +Q + E+ LA++ V YVE SA T+ + VF
Sbjct: 112 GNKCDLED----------KRQVSV--EEAANLAEQWG-VNYVETSAKTRANVDKVF 154
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 6e-10
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFL 250
+++DTAGQE + L Y ++ + V +F N+ + W E+ + Q +
Sbjct: 65 TIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKM 124
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
LVG ++D + ++ +S E+G LAKE + ++ECSA T++ ++ F+E
Sbjct: 125 LVGNKVD------------RESERDVSREEGMALAKEHGCL-FLECSAKTRENVEQCFEE 171
Query: 311 AILAALEPP 319
L +E P
Sbjct: 172 LALKIMEVP 180
|
Length = 211 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-10
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 67 VVVGDGAVGKTCLLISYTTNKF---PSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
VVVG G VGK+ LL + + T D Y + G L DT G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLV--LVDTPGLD 58
Query: 123 DYDRLRP-----LSYPQTDVFLVCF 142
++ L L D+ L+
Sbjct: 59 EFGGLGREELARLLLRGADLILLVV 83
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFL 250
+++DTAGQE + L Y ++ + V +F+N+ + W+ E+ + +
Sbjct: 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKM 110
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
LVG +ID + + ++ E+G+K A++ + ++E SA T+ G++ F+E
Sbjct: 111 LVGNKIDK-------------ENREVTREEGQKFARKHNML-FIETSAKTRIGVQQAFEE 156
Query: 311 AIL 313
+
Sbjct: 157 LVE 159
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQE++D + Y ++ FS SFE + E W ++ C P +LV
Sbjct: 55 LWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQ 113
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289
T+IDL + A I+ E+ E LAK L+
Sbjct: 114 TKIDLLDQA------------VITNEEAEALAKRLQ 137
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+G G VGK+ L + + F +Y PT+ D+Y + + + L + DTAG E +
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62
Query: 125 DRLRPL 130
+R L
Sbjct: 63 TAMRDL 68
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 22/122 (18%)
Query: 184 INPGWVRDRSLFDTAGQEDYDRLRPL--SYPQTDV-FLVCFSVVSPSSFENVKEKWVPEI 240
I PG L+DTAGQE R R + SY + V L+ F + + SFE+V + W+ E
Sbjct: 46 IEPGVRIKLQLWDTAGQE---RFRSITRSYYRNSVGVLLVFDITNRESFEHVHD-WLEEA 101
Query: 241 THH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
H + F+LVG + DL Q+ ++ E+ EKLAK+L +KY+E SA
Sbjct: 102 RSHIQPHRPVFILVGHKCDLE------------SQRQVTREEAEKLAKDLG-MKYIETSA 148
Query: 299 LT 300
T
Sbjct: 149 RT 150
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-09
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 18/97 (18%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEY------VPTVF--DNYAVTV--------M 105
+TIKCVVVGD AVGKT L+ + NK ++Y VPTV+ D Y V +
Sbjct: 1 ETIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV 60
Query: 106 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+ G +L L+DT G D+D+ R +Y ++DV L+CF
Sbjct: 61 VDGVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCF 95
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VV+G G VGK+ L I + F EY PT+ D+Y + I GE L
Sbjct: 4 KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLL 52
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+G +VGK+ L + + F Y PT+ + ++ + G+ Y L + DTAGQ++Y
Sbjct: 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-09
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGL 55
M+ K VV+GDG VGKT LL ++FP Y PT+ + A T+ L L
Sbjct: 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQL 58
|
Length = 219 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VV+G G VGK+ L I + F +Y PT+ D+Y + I GE L
Sbjct: 2 KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLL 50
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-09
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGD GKT LL + + FP YVPTVF+NY + + + L L
Sbjct: 2 CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSL 53
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-09
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 31/124 (25%)
Query: 194 LFDTAGQEDYDRLRPLSYPQT-DVFLVCFSVVSPSSFENVKEKWVPEITHHCQ------- 245
+ DTAGQE+Y +R Y +T + FL F++ S SFE++ T+ Q
Sbjct: 53 ILDTAGQEEYSAMRD-QYMRTGEGFLCVFAINSRKSFEDIH-------TYREQIKRVKDS 104
Query: 246 -KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304
P +LVG + DL + +S QG+ LAK + Y+E SA T++G+
Sbjct: 105 DDVPMVLVGNKCDLAA-------------RTVSTRQGQDLAKSY-GIPYIETSAKTRQGV 150
Query: 305 KNVF 308
+ F
Sbjct: 151 EEAF 154
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-09
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG E +
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R L F++ +
Sbjct: 63 TAMRDLYMKNGQGFVLVY 80
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-09
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272
+ +V + +SV PS+ E ++ KW+P I K P +LVG + DLR+ + + +
Sbjct: 72 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAG--LEEE 129
Query: 273 QKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318
PI E +E++ VECSA T + VF A A L P
Sbjct: 130 MLPIMNE-----FREIET--CVECSAKTLINVSEVFYYAQKAVLHP 168
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-09
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L
Sbjct: 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 51
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 8e-09
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V +GD +VGKT ++ + + F ++Y T+ D + T+ + + L L+DTAGQE
Sbjct: 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61
Query: 124 YDRLRPLSY 132
+ L P SY
Sbjct: 62 FRSLIP-SY 69
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 8e-09
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAG 120
+ K +V+GD VGKTCL + +FP T+ D TV I GE + L+DTAG
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60
Query: 121 QEDY 124
QE +
Sbjct: 61 QERF 64
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 20/60 (33%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ ++ + F ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VV+GDGA GKT LL +T FP Y PTVF+NY + + G L L
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSL 52
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 25/125 (20%)
Query: 194 LFDTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPF 249
++DTAGQE R R ++ Y ++ + V SF NVK+ W+ EI + +
Sbjct: 55 IWDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRYASENVNK 110
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
LLVG + DL +K + + + ++ A EL + ++E SA K NV +
Sbjct: 111 LLVGNKCDL------------TDKKVVDYTEAKEFADELG-IPFLETSA---KNATNV-E 153
Query: 310 EAILA 314
EA +
Sbjct: 154 EAFMT 158
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 155 NRKLGGWFWFISTEHSPPMKL----HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS 210
R L G F E L H L F TN +R +++DTAGQE + LR
Sbjct: 18 KRHLTGEF-----EKKYVATLGVEVHPLDFHTNRGK--IR-FNVWDTAGQEKFGGLRDGY 69
Query: 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270
Y Q ++ F V S +++NV W ++ C+ P +L G ++D+++ K
Sbjct: 70 YIQGQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR--------K 120
Query: 271 NKQKPISFEQGEKLAKELKAVKYVECSALT 300
K K I+F + K ++Y E SA +
Sbjct: 121 VKPKQITFHRK-------KNLQYYEISAKS 143
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
K ++VGDG VGKT + + T +F +Y+PT+ + + + P ++DTAGQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + LR Y + ++ F
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMF 89
|
Length = 215 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGKT L+ Y KF ++Y T+ D V + TL ++DTAGQE
Sbjct: 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ L Y D ++ +
Sbjct: 62 FQSLGVAFYRGADCCVLVY 80
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 4e-08
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
+ +++GD VGKTCLL +T N+F S ++ T+ ++ + T+ + G + ++DTAGQE
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61
Query: 124 YDRLRPLSYPQTD-VFLV 140
Y + Y + +FLV
Sbjct: 62 YQTITKQYYRRAQGIFLV 79
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-08
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 40/155 (25%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN----------VKEKWVPEITHH 243
+ DTAGQE+Y +R FL +S+ S SSFE VK+K
Sbjct: 57 ILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-------- 108
Query: 244 CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303
+ P +LVG + DL + + +S +G++LAK + ++E SA +
Sbjct: 109 -DRVPMILVGNKCDLDSE------------RQVSTGEGQELAKSF-GIPFLETSAKQRVN 154
Query: 304 LKNVFDE---AILAALEPPEPPKKRK-----CVLL 330
+ F E I L+ P +K+K C++L
Sbjct: 155 VDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL 189
|
Length = 189 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-08
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+ LL+ + N F Y+ T+ ++ + TV I GE L ++DTAGQE
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67
Query: 124 Y 124
+
Sbjct: 68 F 68
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-08
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQED 123
K VV+GD GK+ LL +FP E + D AV + G+ L ++D G+E+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ D L+ +
Sbjct: 61 LKFEHIIFMKWADAILLVY 79
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 9e-08
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++GD VGK+ LL +T KF +Y T+ ++ T+ + G+ L
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKL 51
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 67 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR 126
VV+G VGKT ++ + +F +Y PT+ D + I GE Y L + DT+G +
Sbjct: 4 VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63
Query: 127 LRPLSYPQTDVFLVCF 142
+R LS DVF++ F
Sbjct: 64 MRRLSILTGDVFILVF 79
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V+G VGK+ L + + T +F EY P + Y+ V I GE +L + DT GQ+
Sbjct: 1 KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQ 58
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ +T +F + T+ + A + I G+ L ++DTAGQE
Sbjct: 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65
Query: 124 Y 124
+
Sbjct: 66 F 66
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLG------ 114
IK + +GD VGKT L YT NKF +++ TV F V G T G
Sbjct: 5 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64
Query: 115 --LFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
L+DTAGQE + L + FL+ F
Sbjct: 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLMF 94
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 2e-07
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 2 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 57
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + LR Y +D L+ FSV SF+N+ W E ++ + P
Sbjct: 58 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFP 116
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
F+++G +ID+ ++ +S E+ + ++ Y E SA + F
Sbjct: 117 FVILGNKIDI-------------PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163
Query: 309 DEAI 312
+EA+
Sbjct: 164 EEAV 167
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLL 251
L+DTAGQE + L + FL+ F + S SF NV+ W+ ++ H C+ +L
Sbjct: 67 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRN-WMSQLQAHAYCENPDIVL 125
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300
+G + DL Q+ +S Q +LA + + Y E SA T
Sbjct: 126 IGNKADL------------PDQREVSERQARELADKYG-IPYFETSAAT 161
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 123
K +VVGD +VGKTCL+ + + F Y T+ ++ + + G P++L L+DTAGQE
Sbjct: 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y ++ F
Sbjct: 62 FKCIASTYYRGAQAIIIVF 80
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
K ++VGD VGKTCLL+ + F ++ TV F N VTV G L ++DTAG
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTV--DGVKVKLQIWDTAG 59
Query: 121 QEDYDRLRPLSY 132
QE R R +++
Sbjct: 60 QE---RFRSVTH 68
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y ++ + + SFEN+K W+ I H + +L
Sbjct: 58 DTAGQE---RFRTITTSYYRGAMGIILVYDITDEKSFENIK-NWMRNIDEHASEDVERML 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + D+ E + +S E+GE LA+E +K++E SA ++ F
Sbjct: 114 VGNKCDMEEK------------RVVSKEEGEALAREYG-IKFLETSAKANINVEEAF 157
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK--TPFLL 251
+FD+AGQE + + + Q V V + V + SF N +W+ + H TP +L
Sbjct: 57 IFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS-RWINRVRTHSHGLHTPGVL 115
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DL + A+ + Q L K+ E SA G + F
Sbjct: 116 VGNKCDLTDRREVDAAQAQ------ALAQANTL-------KFYETSAKEGVGYEAPFLS 161
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGKTCL+ +T FP T+ ++ + TV I GE L ++DTAGQE
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68
Query: 124 Y 124
+
Sbjct: 69 F 69
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ------K 246
+ FD +G +Y +R Y T L+ + V SFE + + W+ E+
Sbjct: 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMEN 110
Query: 247 TPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKN 306
++ +IDL K + +S ++G A+ KY E SA T +G+
Sbjct: 111 IVVVVCANKIDL------------TKHRAVSEDEGRLWAESKGF-KYFETSACTGEGVNE 157
Query: 307 VFD 309
+F
Sbjct: 158 MFQ 160
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-07
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQKTP 248
+ DTAG E + +R L F + +S+ + SF ++++ + + + + P
Sbjct: 50 MLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDT-EDVP 108
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DL + ++ +S E+G+ LA++ ++E SA ++ + +F
Sbjct: 109 MILVGNKCDLED------------ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156
Query: 309 DEAI 312
+ +
Sbjct: 157 YDLV 160
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 122
IK + +G+ VGK+C++ Y +F S+Y+PT+ +Y V V + + + FD +G
Sbjct: 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60
Query: 123 DYDRLRPLSYPQTD-VFLVC 141
+Y +R Y T V LV
Sbjct: 61 EYLEVRNEFYKDTQGVLLVY 80
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 176 HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 235
H L F TN P + +++DTAGQE + LR Y + ++ F V S +++NV
Sbjct: 47 HPLKFYTNCGP--IC-FNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PN 102
Query: 236 WVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295
W +I C+ P +LVG ++D+++ + K + I+F + K ++Y +
Sbjct: 103 WHRDIVRVCENIPIVLVGNKVDVKD--------RQVKARQITFHRK-------KNLQYYD 147
Query: 296 CSA 298
SA
Sbjct: 148 ISA 150
|
Length = 215 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-07
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH---HCQKTPFL 250
++DTAG E Y+ + + Y +VC+ + SSFE K WV E+ + HC+
Sbjct: 54 IWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAK-FWVKELQNLEEHCK---IY 109
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
L GT+ DL E +L + + F + A E+KA ++ E S+ T + + +F
Sbjct: 110 LCGTKSDLIEQDRSL--------RQVDFHDVQDFADEIKA-QHFETSSKTGQNVDELF 158
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-07
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLV 252
++DTAGQE Y + Y F++ + + + SF V++ W +I T+ +LV
Sbjct: 54 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVILV 112
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + D+ ++ + +S E+G +LA +L ++ E SA +K VF+ +
Sbjct: 113 GNKCDMEDE------------RVVSAERGRQLADQL-GFEFFEASAKENINVKQVFERLV 159
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 8e-07
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F + T+ +A T+ I G+ ++DTAGQE
Sbjct: 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64
Query: 124 Y 124
Y
Sbjct: 65 Y 65
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-07
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP 50
K VV+GDG VGKT L I N F Y PT+ D+Y V++ G+P
Sbjct: 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQP 46
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 9e-07
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 119
K V++GD +VGK+ +++ + N+F T+ F TV + ++DTA
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQ--TVNLDDTTVKFEIWDTA 58
Query: 120 GQEDYDRLRPLSY 132
GQE Y L P+ Y
Sbjct: 59 GQERYRSLAPMYY 71
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI 46
K VVVGD GKT LL + + +P YVPTVF+NY + I
Sbjct: 3 KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEI 44
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCQKTPFLLV 252
+ DTAG E + +R L F+V +S+V+ +F+++K + +K P +LV
Sbjct: 53 ILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILV 112
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G ++DL ++ +S +G LA+E ++E SA ++ + +F E +
Sbjct: 113 GNKVDL------------ESEREVSSAEGRALAEEW-GCPFMETSAKSKTMVNELFAEIV 159
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 67 VVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYT---LGLFDTAGQE 122
+V+GD VGK+ LL +T +F PTV D ++ + I EP L L+DTAGQE
Sbjct: 6 IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEI--EPGVRIKLQLWDTAGQE 63
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPFL 250
+ DTAG E + +R L F++ +S+ + S+F ++++E+ + + P +
Sbjct: 53 ILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILR--VKDTEDVPMI 110
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL + ++ + EQG+ LA++ ++E SA + + +F
Sbjct: 111 LVGNKCDLED------------ERVVGKEQGQNLARQWGC-AFLETSAKAKINVNEIF 155
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 121
+K V++G +VGKT L+ Y ++F Y T+ + A +++G TLG++DTAG
Sbjct: 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E Y+ + + Y +VC+
Sbjct: 61 ERYEAMSRIYYRGAKAAIVCY 81
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ +VGKT L Y + F S +V TV ++ V TV + L ++DTAGQE
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62
Query: 124 YDRLRPLSYPQTDVFLVCF--GNMMNIRRSVDWNRKLGGWFW 163
Y + Y F++ + N + DW+ ++ + W
Sbjct: 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 104
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDV-FLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVG 253
DTAGQE Y R +Y + V L+ + + S+FENV E+W+ E+ H +LVG
Sbjct: 58 DTAGQERY-RAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHADSNIVIMLVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300
+ DLR + + E+ + A++ + ++E SAL
Sbjct: 116 NKSDLRH------------LRAVPTEEAKAFAEKNG-LSFIETSALD 149
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ +T +F + T+ + A + I +P L ++DTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67
Query: 124 Y 124
+
Sbjct: 68 F 68
|
Length = 210 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 175 LHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE 234
+H L F TN +R +DTAGQE + LR Y ++ F V + +++NV
Sbjct: 50 VHPLDFFTNCGK--IR-FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-P 105
Query: 235 KWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294
W ++ C+ P +L G ++D++ + K K ++F + K ++Y
Sbjct: 106 TWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRK-------KNLQYY 150
Query: 295 ECSA 298
E SA
Sbjct: 151 EISA 154
|
Length = 219 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V+VGDG GKT + + T +F +YV T+ + + + ++DTAGQE
Sbjct: 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ LR Y Q ++ F
Sbjct: 61 KFGGLRDGYYIQGQCAIIMF 80
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + + Y T +V + V + SF NVK +W+ EI +C +LVG
Sbjct: 59 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292
+ D E + A + E AKE V+
Sbjct: 118 NKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVE 156
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-06
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 32/161 (19%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +R +++DTAGQE + LR Y Q ++ F V + +++NV
Sbjct: 30 VEVHPLVFHTNRGP--IR-FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV 86
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292
W ++ C+ P +L G ++D+++ K K K I+F + + L +
Sbjct: 87 P-NWHRDLVRVCENIPIVLCGNKVDVKD--------RKVKAKSITFHRKKNL-------Q 130
Query: 293 YVECSALTQKGLKNVF---------DEAI----LAALEPPE 320
Y + SA + + F D + + AL PPE
Sbjct: 131 YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 171
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
T K VVVG G VGK+ L I + + F ++Y PT+ D+Y I G+ L
Sbjct: 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARL 52
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 194 LFDTAGQEDYDR-LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFL 250
L+DTAGQE + + + Y + + V + +SF ++ W+ E H + P +
Sbjct: 55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPS-WIEECEQHSLPNEVPRI 113
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301
LVG + DLRE LA+ S E AK+ +VE +T
Sbjct: 114 LVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTL 164
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLV 252
++DTAGQE + + Y + ++ + + SSFE+V W+ E+ + LL+
Sbjct: 56 IWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLI 114
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DL E Q+ + FE+ LA+ + +E SA K NV +EA
Sbjct: 115 GNKCDLEE------------QREVLFEEACTLAEHYGILAVLETSA---KESSNV-EEAF 158
Query: 313 L 313
L
Sbjct: 159 L 159
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ K V+VGDG GKT + + T +F +Y PT+ + + + +DTAGQ
Sbjct: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + LR Y ++ F
Sbjct: 73 EKFGGLRDGYYIHGQCAIIMF 93
|
Length = 219 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-06
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-06
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL +T KF ++ T+ + + + G+ L ++DTAGQE
Sbjct: 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63
Query: 124 Y 124
+
Sbjct: 64 F 64
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G GK+CLL + NKF + T+ + V +GG+ L ++DTAGQE
Sbjct: 2 KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE- 60
Query: 124 YDRLRPL--SY 132
R R + SY
Sbjct: 61 --RFRSVTRSY 69
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCQKTPFLLV 252
+ DTAGQ ++ +R + F++C+SV SF+ E K + + P +LV
Sbjct: 54 ILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLV 113
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G ++DL +Q+ ++ E+G LA+E + E SA + + + F
Sbjct: 114 GNKVDLE------------QQRQVTTEEGRNLAREFNC-PFFETSAALRFYIDDAF 156
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT---LGLFDTAGQ 121
K +V+GD VGKT ++ Y F Y T+ ++A+ V I +P T L L+D AGQ
Sbjct: 2 KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKV-IEWDPNTVVRLQLWDIAGQ 60
Query: 122 EDYD 125
E +
Sbjct: 61 ERFG 64
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
+DTAGQE + + Y + ++ F V +++N+ KW E+ + + P ++V
Sbjct: 53 FWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVA 111
Query: 254 TQIDL 258
+IDL
Sbjct: 112 NKIDL 116
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI------THHCQKT 247
++D QED L D +++ +SV SSFE E+ +
Sbjct: 53 VYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEK-----ASELRIQLRRARQAEDI 107
Query: 248 PFLLVGTQIDL---REDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304
P +LVG + DL RE +S ++G A K++E SA Q +
Sbjct: 108 PIILVGNKSDLVRSRE---------------VSVQEGRACAVVFDC-KFIETSAALQHNV 151
Query: 305 KNVFDEAI-LAALEPPEPPKK 324
+F+ + L K
Sbjct: 152 DELFEGIVRQVRLRRDSKEKN 172
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE ++ + Y ++ + + +F+++ KW+ I + + LLV
Sbjct: 53 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLV 111
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G ++D D + I+ +QGEK A+++ +++ E SA + +F
Sbjct: 112 GNKLDCETD------------REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VV+G G VGK+ L + + N F Y PT+ D+Y V I G L
Sbjct: 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDL 51
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQKTP 248
D + DTAG E + +R L FL+ +SV S +S + E + V I P
Sbjct: 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVP 108
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DL +D + +S E G L+++ V + E SA + + VF
Sbjct: 109 MVLVGNKADLEDD------------RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156
Query: 309 DEAI 312
+ +
Sbjct: 157 IDLV 160
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV-----MIGGEPYTLGLFDT 118
+K +++GD AVGK+ L+ + + Y P YA+T+ G+ + +DT
Sbjct: 1 VKIILLGDSAVGKSKLVERFLMDG----YEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162
AGQE + + Y + ++ F ++ R + + + L W+
Sbjct: 57 AGQERFQTMHASYYHKAHACILVF----DVTRKITY-KNLSKWY 95
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
+ V +G VGKT L+ + + F ++ TV + ++ + G T+ + DT+G +
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R LS D F + +
Sbjct: 61 PAMRKLSIQNGDAFALVY 78
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K VVVG G VGK+ L I + N F EY PT+ D+Y +I E
Sbjct: 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEE 51
|
Length = 189 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K V++G G VGK+ + + + ++ FP + PT+ D Y I EP L
Sbjct: 4 KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALL 52
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGE-PYTLGLFDTAGQ 121
IK VV+GDGA GKT L+ + F Y T+ D ++ + + G TL ++D GQ
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 124 Y 124
Y
Sbjct: 74 Y 74
|
Length = 216 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQE 122
+K ++GD +GKT L++ Y +F EY+ T+ N+ T+ I G T ++D GQ
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
++ + PL L F
Sbjct: 61 EFINMLPLVCKDAVAILFMF 80
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK +VVG+G VGK+ ++ + F +Y T+
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTI 33
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG-LNFARTMQ 62
K VV+G G VGK+ L + + + F +Y PT+ D Y + + P L L+ A T Q
Sbjct: 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 61
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VV+G G VGK+ L + + F +Y PT+ D+Y + + + L
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCML 51
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 5 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 37
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-05
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAGQE + + Y L+ + V + SSF+N++ W+ EI + Q + L+
Sbjct: 54 IWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIR-AWLTEILEYAQSDVVIMLL 112
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300
G + D+ + ++ + E GE+LAKE V ++E SA T
Sbjct: 113 GNKADM------------SGERVVKREDGERLAKEY-GVPFMETSAKT 147
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-05
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
++ LS + F++ +
Sbjct: 63 PAMQRLSISKGHAFILVY 80
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTD-VFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLL 251
++DTAGQE Y + Y + +FLV + + S S++++ KWV ++ + + +L
Sbjct: 53 IWDTAGQERYQTITKQYYRRAQGIFLV-YDISSERSYQHIM-KWVSDVDEYAPEGVQKIL 110
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+G K + +++ + EQG KLAKE + + E SA T K +K F
Sbjct: 111 IG------------NKADEEQKRQVGDEQGNKLAKEY-GMDFFETSACTNKNIKESF 154
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-05
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 65 KCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTA 119
+C VVGD AVGK+ L+ + ++ F Y T V V + L +FD+A
Sbjct: 2 QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQE + + + Q V V +
Sbjct: 62 GQELFSDMVENVWEQPAVVCVVY 84
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
+K +++GD VGK+ LL+ +T + F + T+ ++ V TV + G+ L +
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAI 53
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQ 121
+ K +++GD VGK+ LL+S+ ++ + PT+ ++ + + +GG+ L ++DTAGQ
Sbjct: 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ 72
Query: 122 EDYDRLRPLS 131
E R R L+
Sbjct: 73 E---RFRTLT 79
|
Length = 211 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 172 PMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN 231
++ TL T G +++D G+E+ + D L+ + + S
Sbjct: 30 EIQGDTLAVDTLEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNE 89
Query: 232 VKE--KWVPEITHHCQKTPFLLVGTQI 256
V W+P + K P +LVG ++
Sbjct: 90 VSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFL 250
+ DT+G + +R LS D F + +SV P SFE VK + EI + P +
Sbjct: 50 DILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVK-RLREEILEVKEDKFVPIV 108
Query: 251 LVGTQIDL 258
+VG +ID
Sbjct: 109 VVGNKIDS 116
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE
Sbjct: 2 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 46
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL--L 251
L+DTAGQE + + Y ++ F + +S E+ ++ W+ + + L L
Sbjct: 53 LWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQ-WLEDALKENDPSSVLLFL 111
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
VGT+ DL A + A +Q I KLA+E+KA +Y SALT + +++ F
Sbjct: 112 VGTKKDLSSPA----QYALMEQDAI------KLAREMKA-EYWAVSALTGENVRDFFFRV 160
Query: 312 ILAALEP 318
E
Sbjct: 161 ASLTFEL 167
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 69 VGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL 127
VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE + L
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 128 RPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
R Y Q ++ F + + +W+R L
Sbjct: 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL 93
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGKTC++ + + F T+ ++ + T+ I G+ L ++DTAGQE
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE- 63
Query: 124 YDRLRPL--SY 132
R R + SY
Sbjct: 64 --RFRTITQSY 72
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
L+DTAGQE + L P + +V + + + SFEN KW+ +I + K + LV
Sbjct: 33 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALV 91
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + + +++E+G + A+E + + E SA +K +F +
Sbjct: 92 GNKTDLGD------------LRKVTYEEGMQKAQEYNTM-FHETSAKAGHNIKVLFKK 136
|
Length = 176 |
| >gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQ 121
C V+G GK+ LL ++ F + Y PT+ YAV TV + G+ L L +
Sbjct: 5 FLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGED 64
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E+ L DV C
Sbjct: 65 EEAILLNDAELAACDV--ACL 83
|
Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K V++G+G VGKT L++ Y NKF ++ T ++ TV IGG+ L
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDL 51
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ ++ + F ++ T+
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI 36
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI 46
K VV+GD GK+ LL +FP E + D AV +
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLE 42
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEY------VPTVF--DNYAV 42
+TIKCVVVGD AVGKT L+ + NK ++Y VPTV+ D Y V
Sbjct: 1 ETIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRV 49
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG-LNFARTMQ 62
K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L L+ A T Q
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGG 48
IK + +G+ VGK+C++ Y +F S+Y+PT+ +Y V V +
Sbjct: 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN 46
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K ++VGDG VGKT + + T +F +Y+PT+
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL 42
|
Length = 215 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K V+G VGK+ L + + T +F EY P + Y+ V I GE +L
Sbjct: 1 KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSL 49
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTV---FDNYAVTV 44
K ++VGD VGKTCLL+ + F ++ TV F N VTV
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTV 45
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+ V++GD VGK+ L +T + S Y + D Y TV + GE TL ++D QED
Sbjct: 2 RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61
Query: 124 YDRLRPLSYPQTDVFLVCF 142
L D +++ +
Sbjct: 62 GMWLEDSCMQVGDAYVIVY 80
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 6e-04
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAGQE Y + Y L+ + + +F+NV ++W+ E+ H ++
Sbjct: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMA 123
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL N + ++ E G+ LA E + + ++E SAL ++ F
Sbjct: 124 GNKSDL------------NHLRSVAEEDGQALA-EKEGLSFLETSALEATNVEKAF 166
|
Length = 216 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 7e-04
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
K V+VGD GKT +L + +P YVPTVF+NY
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY 50
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 8e-04
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K V+G +VGK+ L + + F Y PT+ + ++ + G+ Y L
Sbjct: 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHL 51
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGE 49
+ K +V+GD VGKTCL + +FP T+ D TV I GE
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGE 49
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
++DTAGQE + + Y L+ + + +F ++ W+ + H +L+
Sbjct: 57 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLI 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ +S+E+GE A+E + ++E SA T ++ F
Sbjct: 116 GNKCDL------------ESRREVSYEEGEAFARE-HGLIFMETSAKTASNVEEAF 158
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V +GD +VGKT ++ + + F ++Y T+
Sbjct: 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATI 33
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.002
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+ +++GD VGKTCLL +T N+F S ++ T+
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTI 33
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--------KW-VPEITHHC 244
+ DT+G + +R LS DVF++ FS+ + SFE V K + T
Sbjct: 52 ILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKEN 111
Query: 245 QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304
K P ++ G + D D P + + ++ E+L + Y E SA L
Sbjct: 112 VKIPMVICGNKADR--DFP----------REVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159
Query: 305 KNVF 308
+F
Sbjct: 160 DEMF 163
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 24/128 (18%)
Query: 193 SLFDTAGQEDYD----RLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQK 246
+ DT GQ+ + R L + D F++ +S+ SSF+ V + + + EI
Sbjct: 50 EIQDTPGQQQNEDPESLERSLRW--ADGFVLVYSITDRSSFDVVSQLLQLIREI-KKRDG 106
Query: 247 T-PFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA-LTQKGL 304
P +LVG + DL + +S E+G+KLA EL + + E SA +
Sbjct: 107 EIPVILVGNKADLLHS------------RQVSTEEGQKLALELGCLFF-EVSAAENYLEV 153
Query: 305 KNVFDEAI 312
+NVF E
Sbjct: 154 QNVFHELC 161
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEP 50
IK VV+GDGA GKT L+ + F Y T+ D ++ + + G
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSL 48
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 18/71 (25%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-------PYTLGLF 116
+K V++GD VGKT LL Y +F + V TV GG PY + ++
Sbjct: 1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTV----------GGAFYLKQWGPYNISIW 49
Query: 117 DTAGQEDYDRL 127
DTAG+E + L
Sbjct: 50 DTAGREQFHGL 60
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 17/82 (20%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV----------FDNYAVTVMI----GGEP 50
K +++GD VGKT L+ Y KF ++Y T+ D+ VT+ I G E
Sbjct: 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61
Query: 51 Y-TLGLNFARTMQTIKCVVVGD 71
+ +LG+ F R CV+V D
Sbjct: 62 FQSLGVAFYRGADC--CVLVYD 81
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.003
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+ VV G G VGK+ L++ + F Y+PT+ D Y
Sbjct: 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY 38
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ ++ +++G GKT +L + +PT+ N TV ++D GQ
Sbjct: 13 KEMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVTYKN--VKFTVWDVGGQ 68
Query: 122 EDYDRLRPL---SYPQTD--VFLV 140
E LRPL +P TD +F+V
Sbjct: 69 E---SLRPLWRNYFPNTDAVIFVV 89
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
K ++VG G VGKT L KF + T ++ + + L ++D G
Sbjct: 2 AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPA-PERKKIRLNVWDFGG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK 157
QE Y ++L+ F ++R + +R
Sbjct: 61 QEIYHATHQFFLTSRSLYLLVF----DLRTGDEVSRV 93
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 33
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.004
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGE 49
K +++GD VGK+ LL+ + N F Y+ T+ ++ + TV I GE
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE 53
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
S++D GQ ++ + PL L F + S+ ++KE W + + +LV
Sbjct: 52 SIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQARGFNKTAIPILV 110
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
GT+ DL D P +Q+ I+ +Q K AK +KA + CS ++ +F
Sbjct: 111 GTKYDLFADLP------PEEQEEIT-KQARKYAKAMKA-PLIFCSTSHSINVQKIF 158
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| KOG0084|consensus | 205 | 100.0 | ||
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0092|consensus | 200 | 100.0 | ||
| KOG0078|consensus | 207 | 100.0 | ||
| KOG0098|consensus | 216 | 100.0 | ||
| KOG0393|consensus | 198 | 100.0 | ||
| KOG0080|consensus | 209 | 100.0 | ||
| KOG0094|consensus | 221 | 100.0 | ||
| KOG0394|consensus | 210 | 100.0 | ||
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| KOG0079|consensus | 198 | 100.0 | ||
| KOG0087|consensus | 222 | 100.0 | ||
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| KOG0093|consensus | 193 | 100.0 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| KOG0088|consensus | 218 | 100.0 | ||
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 100.0 | |
| KOG0091|consensus | 213 | 99.98 | ||
| KOG0095|consensus | 213 | 99.98 | ||
| KOG0083|consensus | 192 | 99.98 | ||
| KOG0086|consensus | 214 | 99.98 | ||
| KOG0081|consensus | 219 | 99.97 | ||
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.97 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| KOG0395|consensus | 196 | 99.97 | ||
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.97 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.97 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.97 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.97 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.97 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.97 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.97 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.96 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.96 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.96 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.96 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.96 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.96 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.96 | |
| KOG0097|consensus | 215 | 99.96 | ||
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.96 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.96 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.96 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.96 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.96 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.96 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.96 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.96 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.96 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.96 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.96 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.96 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.96 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.96 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.96 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.95 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.95 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.95 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.95 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.95 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.95 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.95 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.95 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.94 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.94 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.94 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.94 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.94 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.94 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.93 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.93 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.93 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.93 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.93 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.93 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.93 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.93 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.92 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.92 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.92 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.92 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.92 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.92 | |
| PTZ00099 | 176 | rab6; Provisional | 99.92 | |
| KOG4252|consensus | 246 | 99.91 | ||
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.89 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.89 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.89 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.89 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.89 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.88 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.88 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.88 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.86 | |
| KOG0094|consensus | 221 | 99.86 | ||
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.86 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.86 | |
| KOG1673|consensus | 205 | 99.86 | ||
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.86 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.85 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.85 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.84 | |
| KOG3883|consensus | 198 | 99.84 | ||
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.83 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.83 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.83 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.83 | |
| KOG0095|consensus | 213 | 99.83 | ||
| KOG0073|consensus | 185 | 99.82 | ||
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.82 | |
| KOG4423|consensus | 229 | 99.81 | ||
| KOG0096|consensus | 216 | 99.81 | ||
| KOG0070|consensus | 181 | 99.8 | ||
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.8 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.79 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.78 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.77 | |
| KOG0393|consensus | 198 | 99.77 | ||
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.76 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.76 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.76 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.76 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.76 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.75 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.74 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.74 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.74 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.74 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.74 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.74 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.74 | |
| KOG1707|consensus | 625 | 99.73 | ||
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.73 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.73 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.73 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.72 | |
| KOG0075|consensus | 186 | 99.72 | ||
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.72 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.72 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.71 | |
| KOG0093|consensus | 193 | 99.7 | ||
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.7 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.7 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.69 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.69 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.68 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.68 | |
| KOG0071|consensus | 180 | 99.68 | ||
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.67 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.67 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.67 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.67 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.66 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.65 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.64 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.64 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.63 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.63 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.62 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.62 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.61 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.61 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.61 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.6 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.6 | |
| KOG0072|consensus | 182 | 99.6 | ||
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.59 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.59 | |
| KOG0395|consensus | 196 | 99.58 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.58 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.58 | |
| KOG1532|consensus | 366 | 99.58 | ||
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.57 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.57 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.57 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.57 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.56 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.56 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.55 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.54 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.54 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.54 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.54 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.53 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.53 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.52 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.51 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.51 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.51 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.51 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.51 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.51 | |
| KOG0083|consensus | 192 | 99.51 | ||
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.5 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.5 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.5 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.5 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.5 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.5 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.5 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.49 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.49 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.49 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.49 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.49 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.49 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.49 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.49 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.49 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.48 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.48 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.48 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.48 | |
| KOG0076|consensus | 197 | 99.47 | ||
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.47 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.47 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.47 | |
| KOG1423|consensus | 379 | 99.47 | ||
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.46 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.46 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.46 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.46 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.45 | |
| KOG0074|consensus | 185 | 99.45 | ||
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.45 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.45 | |
| KOG0081|consensus | 219 | 99.45 | ||
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.44 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.43 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.43 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.43 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.43 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.43 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.42 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.41 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.41 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.41 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.41 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.4 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.4 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.39 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.39 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.38 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.37 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.36 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.36 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.36 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.35 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.35 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.34 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.34 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.33 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.32 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.32 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.31 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.31 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.3 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.3 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.29 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.29 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.29 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.28 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.28 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.27 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.27 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.26 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.26 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.26 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.25 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.25 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.25 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.24 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.24 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.23 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.22 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.2 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.2 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.2 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.19 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.19 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.18 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.17 | |
| KOG1489|consensus | 366 | 99.16 | ||
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.16 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.16 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.15 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.15 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.15 | |
| KOG0705|consensus | 749 | 99.14 | ||
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.14 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.13 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.13 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.13 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.12 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.12 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.12 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.1 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.1 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.1 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.09 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.08 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.08 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.06 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.05 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.04 | |
| KOG1145|consensus | 683 | 99.03 | ||
| KOG0090|consensus | 238 | 99.02 | ||
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.02 | |
| KOG1707|consensus | 625 | 99.02 | ||
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.01 | |
| KOG0462|consensus | 650 | 99.01 | ||
| KOG1191|consensus | 531 | 98.99 | ||
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.99 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 98.99 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.98 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.98 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 98.98 | |
| KOG0096|consensus | 216 | 98.96 | ||
| PRK13768 | 253 | GTPase; Provisional | 98.95 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 98.94 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 98.94 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 98.93 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 98.93 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 98.91 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.9 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 98.89 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 98.88 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 98.88 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 98.88 | |
| KOG0077|consensus | 193 | 98.87 | ||
| KOG3905|consensus | 473 | 98.86 | ||
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 98.85 | |
| KOG0082|consensus | 354 | 98.84 | ||
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.84 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.83 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 98.82 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 98.8 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 98.8 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.79 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.78 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.78 | |
| KOG1673|consensus | 205 | 98.72 | ||
| PRK12739 | 691 | elongation factor G; Reviewed | 98.72 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 98.71 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 98.69 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.66 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.66 | |
| KOG1144|consensus | 1064 | 98.65 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.65 | |
| KOG0084|consensus | 205 | 98.64 | ||
| KOG1490|consensus | 620 | 98.64 | ||
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 98.62 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.61 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.61 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 98.6 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 98.59 | |
| KOG3886|consensus | 295 | 98.59 | ||
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.58 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 98.57 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 98.57 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.54 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.54 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 98.53 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.53 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.52 | |
| PTZ00099 | 176 | rab6; Provisional | 98.51 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 98.49 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 98.47 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.46 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.46 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.46 | |
| KOG0070|consensus | 181 | 98.45 | ||
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.43 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 98.4 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 98.4 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 98.37 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 98.37 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.35 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 98.35 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 98.35 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 98.35 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.34 | |
| KOG0092|consensus | 200 | 98.33 | ||
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 98.33 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 98.31 | |
| KOG0073|consensus | 185 | 98.3 | ||
| KOG0098|consensus | 216 | 98.29 | ||
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 98.29 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 98.26 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 98.25 | |
| KOG0080|consensus | 209 | 98.25 | ||
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 98.24 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 98.24 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.23 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 98.23 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.22 | |
| KOG0075|consensus | 186 | 98.22 | ||
| KOG0394|consensus | 210 | 98.21 | ||
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 98.21 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.2 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 98.19 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 98.19 | |
| KOG0078|consensus | 207 | 98.18 | ||
| KOG0461|consensus | 522 | 98.18 | ||
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 98.17 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 98.17 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.17 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 98.12 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.1 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.1 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 98.1 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.1 | |
| KOG1486|consensus | 364 | 98.09 | ||
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 98.09 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.08 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.07 | |
| KOG0071|consensus | 180 | 98.07 | ||
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 98.07 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.06 | |
| KOG0458|consensus | 603 | 98.05 | ||
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.04 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 98.04 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 98.02 | |
| KOG0079|consensus | 198 | 98.02 | ||
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 98.01 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.01 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 98.01 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 97.99 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.99 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 97.97 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 97.96 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 97.96 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 97.95 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 97.94 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 97.94 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.93 | |
| KOG0087|consensus | 222 | 97.91 | ||
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 97.9 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 97.9 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 97.89 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 97.88 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 97.87 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 97.84 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.84 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 97.82 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 97.81 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.81 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 97.81 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 97.81 | |
| KOG0468|consensus | 971 | 97.79 | ||
| PRK11058 | 426 | GTPase HflX; Provisional | 97.74 | |
| KOG0091|consensus | 213 | 97.73 | ||
| PRK15494 | 339 | era GTPase Era; Provisional | 97.73 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 97.72 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 97.71 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 97.7 | |
| KOG2486|consensus | 320 | 97.69 | ||
| KOG1143|consensus | 591 | 97.66 | ||
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 97.66 | |
| KOG0086|consensus | 214 | 97.65 | ||
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.63 | |
| KOG0410|consensus | 410 | 97.63 | ||
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 97.62 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 97.62 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 97.61 | |
| KOG3887|consensus | 347 | 97.6 | ||
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.58 |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=269.57 Aligned_cols=165 Identities=30% Similarity=0.564 Sum_probs=144.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.|||+|+||+|||||||+.||..+.|+++|.+|++..| .+++.++++.+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~i------------------------------ 58 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTI------------------------------ 58 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEE------------------------------
Confidence 58999999999999999999999999999999987555 45555555554
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++||||+||
T Consensus 59 ------------------------------KlQIWDTAGQ---------------------------------------- 68 (205)
T KOG0084|consen 59 ------------------------------KLQIWDTAGQ---------------------------------------- 68 (205)
T ss_pred ------------------------------EEEeeecccc----------------------------------------
Confidence 5556677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|||+++...+|++|+|+|+|||+|+.+||+++. .|+.++.
T Consensus 69 ---------------------------------------ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~-~Wi~Ei~ 108 (205)
T KOG0084|consen 69 ---------------------------------------ERFRTITSSYYRGAHGIIFVYDITKQESFNNVK-RWIQEID 108 (205)
T ss_pred ---------------------------------------HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHH-HHHHHhh
Confidence 777777888888999999999999999999999 8999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee-EEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK-YVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++. +++|.+|||||+|+.+. +.++.++++.|+.+++ ++ |+|+|||++.||+++|..+...+.++.
T Consensus 109 ~~~~~~v~~lLVGNK~Dl~~~------------~~v~~~~a~~fa~~~~-~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 109 RYASENVPKLLVGNKCDLTEK------------RVVSTEEAQEFADELG-IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred hhccCCCCeEEEeeccccHhh------------eecCHHHHHHHHHhcC-CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 987 57899999999999887 9999999999999998 56 999999999999999999999887553
Q ss_pred C
Q psy9997 320 E 320 (330)
Q Consensus 320 ~ 320 (330)
.
T Consensus 176 ~ 176 (205)
T KOG0084|consen 176 G 176 (205)
T ss_pred c
Confidence 3
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=269.68 Aligned_cols=191 Identities=63% Similarity=1.086 Sum_probs=158.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.||..+.|+++|.||+++.+.+.+.+++
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------------------------- 48 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDG-------------------------------- 48 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECC--------------------------------
Confidence 889999999999999999999999999999999998766654444443
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+.+++|||+|+
T Consensus 49 ----------------------------~~~~l~i~Dt~G~--------------------------------------- 61 (191)
T cd01875 49 ----------------------------RTVSLNLWDTAGQ--------------------------------------- 61 (191)
T ss_pred ----------------------------EEEEEEEEECCCc---------------------------------------
Confidence 3445566677777
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
++|..+++.+++++|++++|||++++.||+++...|+..+
T Consensus 62 ----------------------------------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i 101 (191)
T cd01875 62 ----------------------------------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEV 101 (191)
T ss_pred ----------------------------------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 7777778888899999999999999999999975699888
Q ss_pred hhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 241 THHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 241 ~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+..+++|++|||||+|+.......+.......+.++.++++++++.++.++|+|+||++|.||+++|+.+++.++.+..
T Consensus 102 ~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~~ 181 (191)
T cd01875 102 CHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181 (191)
T ss_pred HhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcccc
Confidence 87778899999999999976533333333334467889999999999986789999999999999999999999998766
Q ss_pred CCCCCCcccC
Q psy9997 321 PPKKRKCVLL 330 (330)
Q Consensus 321 ~~~~~~~~~~ 330 (330)
.+++.+|.||
T Consensus 182 ~~~~~~c~~~ 191 (191)
T cd01875 182 IKDTKSCVLL 191 (191)
T ss_pred ccCCCCceeC
Confidence 6666679986
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=254.14 Aligned_cols=164 Identities=27% Similarity=0.524 Sum_probs=143.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
.++||+||||++||||||+.||..+.|.+...|||+..| ++++.+++..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~------------------------------ 53 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNT------------------------------ 53 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcE------------------------------
Confidence 589999999999999999999999999988889987555 5566555444
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+++.||||+||
T Consensus 54 ------------------------------ikfeIWDTAGQ--------------------------------------- 64 (200)
T KOG0092|consen 54 ------------------------------IKFEIWDTAGQ--------------------------------------- 64 (200)
T ss_pred ------------------------------EEEEEEEcCCc---------------------------------------
Confidence 44556677777
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
|+|.++.++||++|+++|+|||+++.+||..+. .|+.++
T Consensus 65 ----------------------------------------ERy~slapMYyRgA~AAivvYDit~~~SF~~aK-~WvkeL 103 (200)
T KOG0092|consen 65 ----------------------------------------ERYHSLAPMYYRGANAAIVVYDITDEESFEKAK-NWVKEL 103 (200)
T ss_pred ----------------------------------------ccccccccceecCCcEEEEEEecccHHHHHHHH-HHHHHH
Confidence 777777888888899999999999999999999 999999
Q ss_pred hhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 241 THHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 241 ~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+.. +++.+.|||||+||... |++..+++..||+..+ ..|||+|||+|.||+++|..|.+.+.+.
T Consensus 104 ~~~~~~~~vialvGNK~DL~~~------------R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 104 QRQASPNIVIALVGNKADLLER------------REVEFEEAQAYAESQG-LLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred HhhCCCCeEEEEecchhhhhhc------------ccccHHHHHHHHHhcC-CEEEEEecccccCHHHHHHHHHHhccCc
Confidence 9887 46778889999999876 9999999999999998 6999999999999999999999999754
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=258.82 Aligned_cols=163 Identities=31% Similarity=0.582 Sum_probs=145.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++||+||||||++.||.++.|...+.+|++-.| .+++.++++.+
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i------------------------------ 61 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKI------------------------------ 61 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEE------------------------------
Confidence 58999999999999999999999999999999997444 66666665444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+++|||+||
T Consensus 62 ------------------------------~lQiWDtaGQ---------------------------------------- 71 (207)
T KOG0078|consen 62 ------------------------------KLQIWDTAGQ---------------------------------------- 71 (207)
T ss_pred ------------------------------EEEEEEcccc----------------------------------------
Confidence 4555677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+.+...||+.|++++||||+++..||+++. .|+..|.
T Consensus 72 ---------------------------------------erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~-~W~~~I~ 111 (207)
T KOG0078|consen 72 ---------------------------------------ERFRTITTAYYRGAMGILLVYDITNEKSFENIR-NWIKNID 111 (207)
T ss_pred ---------------------------------------hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHH-HHHHHHH
Confidence 778888888999999999999999999999999 7999999
Q ss_pred hcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 242 HHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 242 ~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++.+ ++|+||||||+|+... |+|+.+.++++|.++| ++|+|+|||+|.||+++|..+.+.++++
T Consensus 112 e~a~~~v~~~LvGNK~D~~~~------------R~V~~e~ge~lA~e~G-~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 112 EHASDDVVKILVGNKCDLEEK------------RQVSKERGEALAREYG-IKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred hhCCCCCcEEEeecccccccc------------ccccHHHHHHHHHHhC-CeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 9985 8999999999999875 9999999999999998 7999999999999999999999999853
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=251.11 Aligned_cols=163 Identities=27% Similarity=0.503 Sum_probs=143.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-+|++++||.|||||||+.||+.+.|.+.+..|++..| .+.+.++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id---------------------------------- 51 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID---------------------------------- 51 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc----------------------------------
Confidence 58999999999999999999999999888888876555 4444444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++++|+||||+||
T Consensus 52 --------------------------~k~IKlqiwDtaGq---------------------------------------- 65 (216)
T KOG0098|consen 52 --------------------------GKQIKLQIWDTAGQ---------------------------------------- 65 (216)
T ss_pred --------------------------CceEEEEEEecCCc----------------------------------------
Confidence 45555666688887
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+++++.||+.|.+++||||+++++||+.+. .|+.+++
T Consensus 66 ---------------------------------------e~frsv~~syYr~a~GalLVydit~r~sF~hL~-~wL~D~r 105 (216)
T KOG0098|consen 66 ---------------------------------------ESFRSVTRSYYRGAAGALLVYDITRRESFNHLT-SWLEDAR 105 (216)
T ss_pred ---------------------------------------HHHHHHHHHHhccCcceEEEEEccchhhHHHHH-HHHHHHH
Confidence 777788888889999999999999999999999 9999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++. ++..++|+|||+||... |.|+.||+++||++++ +.|+|+||+++.||+++|......|++.
T Consensus 106 q~~~~NmvImLiGNKsDL~~r------------R~Vs~EEGeaFA~ehg-LifmETSakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 106 QHSNENMVIMLIGNKSDLEAR------------REVSKEEGEAFAREHG-LIFMETSAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred HhcCCCcEEEEEcchhhhhcc------------ccccHHHHHHHHHHcC-ceeehhhhhhhhhHHHHHHHHHHHHHHH
Confidence 995 89999999999999876 9999999999999998 7899999999999999999998888754
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=250.22 Aligned_cols=181 Identities=73% Similarity=1.227 Sum_probs=169.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+..+|+++||+.++|||+|+..|..+.|.+.|.||+.++|...+.++ ++.+.+.+|||+||
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGq------------------ 63 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQ------------------ 63 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCC------------------
Confidence 46799999999999999999999999999999999999999999995 99999999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
|.|..+++..|.++|++++
T Consensus 64 -------------------------------------------------------------edYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 64 -------------------------------------------------------------EDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred -------------------------------------------------------------cccccccccCCCCCCEEEE
Confidence 6676778888999999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++.+++||+++.+.|+.+++++++++|+||||+|.||..+....+++....+..++.++++.++++.|+..|+|+||+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~ 162 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL 162 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence 99999999999999999999999999999999999999997766666777778889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+..|+.++|+..++.++.+++
T Consensus 163 tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 163 TQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998875
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=240.64 Aligned_cols=166 Identities=27% Similarity=0.528 Sum_probs=142.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++||+++|++|||||||+.||..+.|.+....||+..| .+...++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd---------------------------------- 56 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD---------------------------------- 56 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc----------------------------------
Confidence 69999999999999999999999999888888887555 4444444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+++.||||+||
T Consensus 57 --------------------------g~~~KlaiWDTAGq---------------------------------------- 70 (209)
T KOG0080|consen 57 --------------------------GKRLKLAIWDTAGQ---------------------------------------- 70 (209)
T ss_pred --------------------------CceEEEEEEeccch----------------------------------------
Confidence 44455556688888
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+.+.+.||+.|.++|+|||+|.+++|..+. .|+.++.
T Consensus 71 ---------------------------------------ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd-~W~~Eld 110 (209)
T KOG0080|consen 71 ---------------------------------------ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLD-IWLKELD 110 (209)
T ss_pred ---------------------------------------HhhhccCHhHhccCceeEEEEEccchhhHHhHH-HHHHHHH
Confidence 666677777778888999999999999999997 9999998
Q ss_pred hcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
-+. +++..|+||||+|...+ |.|+.+|+.+||++++ +.|+|+||++.+||+.+|++++.+|++.+
T Consensus 111 ~Ystn~diikmlVgNKiDkes~------------R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 111 LYSTNPDIIKMLVGNKIDKESE------------RVVDREEGLKFARKHR-CLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhcCCccHhHhhhcccccchhc------------ccccHHHHHHHHHhhC-cEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 876 57788999999998655 9999999999999998 79999999999999999999999999876
Q ss_pred CC
Q psy9997 320 EP 321 (330)
Q Consensus 320 ~~ 321 (330)
.-
T Consensus 178 ~l 179 (209)
T KOG0080|consen 178 SL 179 (209)
T ss_pred ch
Confidence 54
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=250.14 Aligned_cols=169 Identities=31% Similarity=0.542 Sum_probs=154.8
Q ss_pred ecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCC
Q psy9997 57 FARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135 (330)
Q Consensus 57 ~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~ 135 (330)
.+.+++..|++++|+.+||||||++||+.+.|...|.+|+|.+| .+++++.++++.|++|||+||
T Consensus 16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ-------------- 81 (221)
T KOG0094|consen 16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------------- 81 (221)
T ss_pred cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH--------------
Confidence 34567779999999999999999999999999999999999888 669999999999999999999
Q ss_pred ceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCC
Q psy9997 136 DVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTD 215 (330)
Q Consensus 136 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d 215 (330)
|+|+++.+.|+++++
T Consensus 82 -----------------------------------------------------------------ERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 82 -----------------------------------------------------------------ERFRSLIPSYIRDSS 96 (221)
T ss_pred -----------------------------------------------------------------HHHhhhhhhhccCCe
Confidence 778888888899999
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcC-C-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHC-Q-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
++|+|||++|..||++.. +|++.++... + ++-++|||||.||.+. |+++.+|+...|+++++ .|
T Consensus 97 vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dk------------rqvs~eEg~~kAkel~a-~f 162 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDK------------RQVSIEEGERKAKELNA-EF 162 (221)
T ss_pred EEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccch------------hhhhHHHHHHHHHHhCc-EE
Confidence 999999999999999999 9999988765 3 5888999999999887 99999999999999995 99
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+|+||+.|+||.++|..+..++...
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999999988777654
|
|
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=243.42 Aligned_cols=167 Identities=29% Similarity=0.541 Sum_probs=145.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++||+|||||||+.||.++.|...|..||+..| .+.+.++++.+
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~v------------------------------- 58 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSV------------------------------- 58 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEE-------------------------------
Confidence 8999999999999999999999999999999997555 65666554444
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.++||||+||
T Consensus 59 -----------------------------tlQiWDTAGQ----------------------------------------- 68 (210)
T KOG0394|consen 59 -----------------------------TLQIWDTAGQ----------------------------------------- 68 (210)
T ss_pred -----------------------------EEEEEecccH-----------------------------------------
Confidence 4555677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
|+|.++.-.+|+.||.++||||++++.||+++. .|..++..
T Consensus 69 --------------------------------------ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~-~Wr~EFl~ 109 (210)
T KOG0394|consen 69 --------------------------------------ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLE-NWRKEFLI 109 (210)
T ss_pred --------------------------------------HHhhhcccceecCCceEEEEeecCChhhhccHH-HHHHHHHH
Confidence 777788888899999999999999999999999 99999877
Q ss_pred cC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 243 HC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 243 ~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.. ...|+|++|||+|+....+ |+++.+.|++||...|.++|||+|||...||+++|+.+.+.+++
T Consensus 110 qa~~~~Pe~FPFVilGNKiD~~~~~~----------r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 110 QASPQDPETFPFVILGNKIDVDGGKS----------RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred hcCCCCCCcccEEEEcccccCCCCcc----------ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 65 2579999999999976422 89999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy9997 318 PPE 320 (330)
Q Consensus 318 ~~~ 320 (330)
.+.
T Consensus 180 ~E~ 182 (210)
T KOG0394|consen 180 NED 182 (210)
T ss_pred ccc
Confidence 764
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=250.59 Aligned_cols=177 Identities=43% Similarity=0.814 Sum_probs=146.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
..+||+++||+|||||||+.||..+.|.++|.||+++.+.+.+.+++.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~-------------------------------- 51 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQ-------------------------------- 51 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCE--------------------------------
Confidence 368999999999999999999999999999999987666544444433
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+.+++|||+|+
T Consensus 52 ----------------------------~~~l~iwDtaG~---------------------------------------- 63 (182)
T cd04172 52 ----------------------------RIELSLWDTSGS---------------------------------------- 63 (182)
T ss_pred ----------------------------EEEEEEEECCCc----------------------------------------
Confidence 345566677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
++|..+++.+++++|++++|||+++++||+++...|+.++.
T Consensus 64 ---------------------------------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~ 104 (182)
T cd04172 64 ---------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 104 (182)
T ss_pred ---------------------------------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 77777788889999999999999999999998448999999
Q ss_pred hcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC-HHHHHHHHHHHhcC
Q psy9997 242 HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG-LKNVFDEAILAALE 317 (330)
Q Consensus 242 ~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~i~~ 317 (330)
+..+++|++|||||+|+........++....++.++.++++++|+++++++|+|+||++|.| |+++|+.+++.++.
T Consensus 105 ~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 105 EFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred HHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 88889999999999999653222222223345679999999999999866899999999998 99999999997664
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=251.69 Aligned_cols=176 Identities=43% Similarity=0.788 Sum_probs=153.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||+++|.++.|...|.||++..+...+.+++..+.+++|||+|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~--------------------- 59 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGS--------------------- 59 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 57999999999999999999999999999999999998888889999999999999999
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++|..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 60 ----------------------------------------------------------PYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred ----------------------------------------------------------hhhhhcchhhcCCCCEEEEEEE
Confidence 6666777788999999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++...|+.++.+..+++|++|||||+|+..+.....++....++.++.++++++++++++.+|+|+||++|.
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~ 161 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE 161 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence 99999999974489999998888999999999999965322222222233467999999999999986689999999999
Q ss_pred C-HHHHHHHHHHHhcC
Q psy9997 303 G-LKNVFDEAILAALE 317 (330)
Q Consensus 303 ~-v~~~f~~l~~~i~~ 317 (330)
| |+++|..+++..++
T Consensus 162 ~~v~~~F~~~~~~~~~ 177 (178)
T cd04131 162 KSVRDIFHVATMACLN 177 (178)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 5 99999999997663
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=255.18 Aligned_cols=178 Identities=41% Similarity=0.721 Sum_probs=146.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
..+||++|||+|||||||+.||..+.|.++|.||++..|...+.+++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~--------------------------------- 58 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEE--------------------------------- 58 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECC---------------------------------
Confidence 46899999999999999999999999999999998766654444433
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+.++||||+|+
T Consensus 59 ---------------------------~~v~l~iwDTaG~---------------------------------------- 71 (232)
T cd04174 59 ---------------------------QRVELSLWDTSGS---------------------------------------- 71 (232)
T ss_pred ---------------------------EEEEEEEEeCCCc----------------------------------------
Confidence 3445666677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
++|..+++.++++||++++|||+++++||+++...|+.++.
T Consensus 72 ---------------------------------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~ 112 (232)
T cd04174 72 ---------------------------------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIM 112 (232)
T ss_pred ---------------------------------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 77777778889999999999999999999986338999998
Q ss_pred hcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC-CHHHHHHHHHHHhcCC
Q psy9997 242 HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK-GLKNVFDEAILAALEP 318 (330)
Q Consensus 242 ~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~i~~~ 318 (330)
+..++.|++|||||+|+........++....++.++.+++++||+++++..|+|+||++|. ||+++|..++..+++.
T Consensus 113 ~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 113 DYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 8778899999999999965433233333334578999999999999985479999999997 8999999999988765
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=243.81 Aligned_cols=175 Identities=56% Similarity=1.007 Sum_probs=143.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.||..+.|..+|.||+++.+.+.+.+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~----------------------------------- 46 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDG----------------------------------- 46 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECC-----------------------------------
Confidence 699999999999999999999999999999998766654444443
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..+.++||||+|+
T Consensus 47 -------------------------~~v~l~i~Dt~G~------------------------------------------ 59 (176)
T cd04133 47 -------------------------NTVNLGLWDTAGQ------------------------------------------ 59 (176)
T ss_pred -------------------------EEEEEEEEECCCC------------------------------------------
Confidence 3445666788777
Q ss_pred eeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc
Q psy9997 164 FISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~ 243 (330)
++|+.+++.++++++++++|||+++++||+++...|+.++.+.
T Consensus 60 -------------------------------------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~ 102 (176)
T cd04133 60 -------------------------------------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHY 102 (176)
T ss_pred -------------------------------------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 6777777888999999999999999999999843899999887
Q ss_pred CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 244 CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 244 ~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+++|++|||||+|+.+..... ......+.++.++++++++.++...|+|+||++|.||+++|+.+++.+++++
T Consensus 103 ~~~~piilvgnK~Dl~~~~~~~--~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~~~ 176 (176)
T cd04133 103 APNVPIVLVGTKLDLRDDKQYL--ADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQPP 176 (176)
T ss_pred CCCCCEEEEEeChhhccChhhh--hhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhcCC
Confidence 7899999999999996531100 0112235689999999999998547999999999999999999999987754
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=249.36 Aligned_cols=177 Identities=40% Similarity=0.772 Sum_probs=146.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||++|||+|||||||+.+|..+.|+.+|.||++++|...+.+++..
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~-------------------------------- 48 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRR-------------------------------- 48 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEE--------------------------------
Confidence 479999999999999999999999999999999987776555554444
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.+.+|||+|+
T Consensus 49 ----------------------------v~L~iwDt~G~----------------------------------------- 59 (222)
T cd04173 49 ----------------------------IELNMWDTSGS----------------------------------------- 59 (222)
T ss_pred ----------------------------EEEEEEeCCCc-----------------------------------------
Confidence 44556677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
+.|..+++.+++++|++++|||+++++||+++...|..++..
T Consensus 60 --------------------------------------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~ 101 (222)
T cd04173 60 --------------------------------------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQE 101 (222)
T ss_pred --------------------------------------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 777777888899999999999999999999996689988888
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC-HHHHHHHHHHHhcCC
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG-LKNVFDEAILAALEP 318 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~i~~~ 318 (330)
..+++|++|||||+|+..+......+.......++.++++.++++.++.+|+|+||+++.| |+++|+.++++.+..
T Consensus 102 ~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 102 FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 7789999999999999764322222222334568999999999999977999999999985 999999999988864
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=248.29 Aligned_cols=188 Identities=45% Similarity=0.779 Sum_probs=161.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
.||+++|++|||||||+++|..+.|...+.||++..+...+.+++..+.+++|||+|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~---------------------- 58 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQ---------------------- 58 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCC----------------------
Confidence 3899999999999999999999999999999999888877888888899999999999
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.|..+++.+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 59 ---------------------------------------------------------EEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred ---------------------------------------------------------hhccccccccccCCCEEEEEEEC
Confidence 56666677788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
++++||+++...|+..+....++.|+++||||+|+...............+.+..+++..+++..+.++|+|+||++|.|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 161 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG 161 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence 99999999975699999887789999999999999765332222223334567889999999988867899999999999
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCCcccC
Q psy9997 304 LKNVFDEAILAALEPP-EPPKKRKCVLL 330 (330)
Q Consensus 304 v~~~f~~l~~~i~~~~-~~~~~~~~~~~ 330 (330)
++++|+++++.++.+. ..+.+.+|++|
T Consensus 162 v~e~f~~l~~~~~~~~~~~~~~~~~~~~ 189 (189)
T cd04134 162 VNEAFTEAARVALNVRPPHPHSSACTIA 189 (189)
T ss_pred HHHHHHHHHHHHhcccccCcCCCcceeC
Confidence 9999999999999876 44677899987
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=231.27 Aligned_cols=161 Identities=30% Similarity=0.555 Sum_probs=142.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+|.++|||+|||||||++||..+.|..+|..|++-.+ .+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkir---------------------------------------- 48 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIR---------------------------------------- 48 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEE----------------------------------------
Confidence 6889999999999999999999999998888886444 33
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+++++|..+.|+||||+|+
T Consensus 49 --------------------Tv~i~G~~VkLqIwDtAGq----------------------------------------- 67 (198)
T KOG0079|consen 49 --------------------TVDINGDRVKLQIWDTAGQ----------------------------------------- 67 (198)
T ss_pred --------------------EeecCCcEEEEEEeecccH-----------------------------------------
Confidence 3445555666777788888
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
|+|+.+...+++..+++++|||+++.+||.++. .|+++++.
T Consensus 68 --------------------------------------ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~-rWLeei~~ 108 (198)
T KOG0079|consen 68 --------------------------------------ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVK-RWLEEIRN 108 (198)
T ss_pred --------------------------------------HHHHHHHHHHccCCceEEEEEECcchhhhHhHH-HHHHHHHh
Confidence 888888888999999999999999999999999 99999999
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++.+|-+|||||.|+.+- +.+..+++++||...+ +.+||+|||..+|++..|..+.+..++
T Consensus 109 ncdsv~~vLVGNK~d~~~R------------rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 109 NCDSVPKVLVGNKNDDPER------------RVVDTEDARAFALQMG-IELFETSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred cCccccceecccCCCCccc------------eeeehHHHHHHHHhcC-chheehhhhhcccchHHHHHHHHHHHH
Confidence 9999999999999999875 8899999999999998 899999999999999999998877764
|
|
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=241.29 Aligned_cols=162 Identities=29% Similarity=0.511 Sum_probs=141.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-|||+++||+|||||-|+.||..++|..+..+|++-.| .+++.++++.
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~------------------------------- 62 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKT------------------------------- 62 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcE-------------------------------
Confidence 48999999999999999999999999988888887444 4455555444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+||||+||
T Consensus 63 -----------------------------vkaqIWDTAGQ---------------------------------------- 73 (222)
T KOG0087|consen 63 -----------------------------VKAQIWDTAGQ---------------------------------------- 73 (222)
T ss_pred -----------------------------EEEeeecccch----------------------------------------
Confidence 45555677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+++.+.||+.|.+++||||++.+.+|+++. .|+.+++
T Consensus 74 ---------------------------------------ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~-rWL~ELR 113 (222)
T KOG0087|consen 74 ---------------------------------------ERYRAITSAYYRGAVGALLVYDITRRQTFENVE-RWLKELR 113 (222)
T ss_pred ---------------------------------------hhhccccchhhcccceeEEEEechhHHHHHHHH-HHHHHHH
Confidence 777777888888889999999999999999998 9999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.|. ++++++|||||+||.+- |.|..+++..+|+..+ ..|+|+||.++.||+++|..++..|++
T Consensus 114 dhad~nivimLvGNK~DL~~l------------raV~te~~k~~Ae~~~-l~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 114 DHADSNIVIMLVGNKSDLNHL------------RAVPTEDGKAFAEKEG-LFFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred hcCCCCeEEEEeecchhhhhc------------cccchhhhHhHHHhcC-ceEEEecccccccHHHHHHHHHHHHHH
Confidence 998 79999999999999875 9999999999999988 799999999999999999999988874
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=237.96 Aligned_cols=175 Identities=94% Similarity=1.431 Sum_probs=145.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||++||++|||||||+.||.++.|+++|.||+++.+...+.+++
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~---------------------------------- 46 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG---------------------------------- 46 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECC----------------------------------
Confidence 5899999999999999999999999998899998765544443333
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+.+++|||+|+
T Consensus 47 --------------------------~~~~l~i~Dt~G~----------------------------------------- 59 (175)
T cd01874 47 --------------------------EPYTLGLFDTAGQ----------------------------------------- 59 (175)
T ss_pred --------------------------EEEEEEEEECCCc-----------------------------------------
Confidence 3445666788777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
++|..++..+++++|++++|||+++++||+++.+.|+..+..
T Consensus 60 --------------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~ 101 (175)
T cd01874 60 --------------------------------------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 101 (175)
T ss_pred --------------------------------------cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 666677777889999999999999999999997569999988
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
..+++|+++||||+|+.......+.+.....+.++.++++++++..+.+.|+|+||++|.|++++|+.++++++
T Consensus 102 ~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~~ 175 (175)
T cd01874 102 HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175 (175)
T ss_pred hCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 77789999999999997654433444444558899999999999987678999999999999999999998653
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=226.83 Aligned_cols=167 Identities=28% Similarity=0.516 Sum_probs=152.4
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|++++|++.||||||+.||....|...+..|+|..+. +++.-..+.+.++||||+|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq------------------- 80 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ------------------- 80 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc-------------------
Confidence 3569999999999999999999999999999999999884 47777778888898888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
|+|+.+...++++|+++|||
T Consensus 81 ------------------------------------------------------------EryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 81 ------------------------------------------------------------ERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred ------------------------------------------------------------hhhhHHHHHHhhccceEEEE
Confidence 77777888889999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++|.+||..++ .|.-.++... .+.|+|+||||||+.++ |.++.|.++.++.++| ..|||+|||
T Consensus 101 yDitNeeSf~svq-dw~tqIktysw~naqvilvgnKCDmd~e------------Rvis~e~g~~l~~~LG-fefFEtSaK 166 (193)
T KOG0093|consen 101 YDITNEESFNSVQ-DWITQIKTYSWDNAQVILVGNKCDMDSE------------RVISHERGRQLADQLG-FEFFETSAK 166 (193)
T ss_pred EecCCHHHHHHHH-HHHHHheeeeccCceEEEEecccCCccc------------eeeeHHHHHHHHHHhC-hHHhhhccc
Confidence 9999999999998 8999998876 79999999999999887 9999999999999999 799999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.+.||+++|+.++..|-+..+.
T Consensus 167 ~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred ccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998776554
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=239.04 Aligned_cols=104 Identities=19% Similarity=0.360 Sum_probs=95.1
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
++|..+++.+++++|++++|||++++.||+++. .|++++..+.+++|++|||||+|+... +.++.++
T Consensus 66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~------------~~v~~~~ 132 (189)
T cd04121 66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFK------------RQVATEQ 132 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhc------------cCCCHHH
Confidence 667777778889999999999999999999998 899999888789999999999999764 7899999
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++++.++ ++|+|+||++|.||+++|+++++.++..
T Consensus 133 ~~~~a~~~~-~~~~e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 133 AQAYAERNG-MTFFEVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999987 7999999999999999999999988743
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=240.73 Aligned_cols=180 Identities=53% Similarity=0.940 Sum_probs=156.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|..+.|...+.||++..+...+... +..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--------------------- 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--------------------- 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc---------------------
Confidence 58999999999999999999999999999999998887777765 77888999999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~ad~ii~v~d 81 (187)
T cd04132 60 ----------------------------------------------------------EEYDRLRPLSYPDVDVLLICYA 81 (187)
T ss_pred ----------------------------------------------------------hhHHHHHHHhCCCCCEEEEEEE
Confidence 6666667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++...|+..+....+++|+++||||+|+.... ...+.+..+++++++..++..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 82 VDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK--------NLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc--------cccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 9999999999757998887777789999999999996531 12256888999999999985589999999999
Q ss_pred CHHHHHHHHHHHhcCCC------CCCCCCCcccC
Q psy9997 303 GLKNVFDEAILAALEPP------EPPKKRKCVLL 330 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~------~~~~~~~~~~~ 330 (330)
|++++|..+++.+++.. ..+++++|+||
T Consensus 154 ~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 154 NVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 99999999999998765 56788999997
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=236.74 Aligned_cols=105 Identities=23% Similarity=0.503 Sum_probs=93.3
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
++|..+++.++++||++++|||+++++||+++. .|+..+.+.. .++|+++||||+|+... +++..+
T Consensus 60 e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~------------~~v~~~ 126 (202)
T cd04120 60 ERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REISRQ 126 (202)
T ss_pred hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHH
Confidence 777777788899999999999999999999998 8999887764 57999999999999754 889999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++++++...+.|+|+||++|.||+++|++++..+.+.
T Consensus 127 ~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 127 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999886447899999999999999999999988754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=241.14 Aligned_cols=173 Identities=36% Similarity=0.602 Sum_probs=151.2
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|..+.|...+.||+++.+...+.+++..+.+++|||+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------- 57 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ----------------------- 57 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCc-----------------------
Confidence 689999999999999999999999999999999888777888888899999999998
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
++|..++..+++.+|++++|||++
T Consensus 58 --------------------------------------------------------~~~~~~~~~~~~~ad~~ilv~d~~ 81 (190)
T cd04144 58 --------------------------------------------------------EEYTALRDQWIREGEGFILVYSIT 81 (190)
T ss_pred --------------------------------------------------------hhhHHHHHHHHHhCCEEEEEEECC
Confidence 566666777888999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 225 SPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+++||+++. .|+..+.... .++|+++||||+|+... +.+..+++..+++.++ ++|+++||++
T Consensus 82 ~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~SAk~ 147 (190)
T cd04144 82 SRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVYE------------REVSTEEGAALARRLG-CEFIEASAKT 147 (190)
T ss_pred CHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEecCCC
Confidence 999999998 8988876643 47899999999999764 7788888999999888 6899999999
Q ss_pred CCCHHHHHHHHHHHhcCCCC-------------CCCCCCcccC
Q psy9997 301 QKGLKNVFDEAILAALEPPE-------------PPKKRKCVLL 330 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~-------------~~~~~~~~~~ 330 (330)
|.|++++|+.+++++.++.. .+++++||||
T Consensus 148 ~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 148 NVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99999999999998874322 2467899987
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=228.94 Aligned_cols=173 Identities=73% Similarity=1.240 Sum_probs=142.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|++|||||||+.||.++.|..+|.||+++.+...+.++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~----------------------------------- 45 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----------------------------------- 45 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEEC-----------------------------------
Confidence 379999999999999999999999999999999865554443333
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+..+.+++|||+|+
T Consensus 46 -------------------------~~~~~l~i~Dt~G~----------------------------------------- 59 (174)
T cd01871 46 -------------------------GKPVNLGLWDTAGQ----------------------------------------- 59 (174)
T ss_pred -------------------------CEEEEEEEEECCCc-----------------------------------------
Confidence 33445667788777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
+.|..+++.+++++|++|+|||+++++||+++...|+..+..
T Consensus 60 --------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~ 101 (174)
T cd01871 60 --------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 101 (174)
T ss_pred --------------------------------------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 666667777889999999999999999999996579988887
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..+++|+++||||+|+.......+.......+.++.++++++++.++.+.|+|+||++|.|++++|+.+++.
T Consensus 102 ~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 102 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 777899999999999965433333333344578999999999999986699999999999999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=221.34 Aligned_cols=166 Identities=30% Similarity=0.546 Sum_probs=141.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.||++++|++.||||||+.||+.+.|.....+|+...| .+.+.+.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e---------------------------------- 58 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE---------------------------------- 58 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc----------------------------------
Confidence 58999999999999999999999999999999985444 3333333
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+....+.||||+||
T Consensus 59 --------------------------d~ra~L~IWDTAGQ---------------------------------------- 72 (218)
T KOG0088|consen 59 --------------------------DCRADLHIWDTAGQ---------------------------------------- 72 (218)
T ss_pred --------------------------cceeeeeeeeccch----------------------------------------
Confidence 34445666677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|.++-+.||+.+++++||||++|++||+.+. .|..+++
T Consensus 73 ---------------------------------------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVK-nWV~Elr 112 (218)
T KOG0088|consen 73 ---------------------------------------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVK-NWVLELR 112 (218)
T ss_pred ---------------------------------------HhhhccCceEEeCCCceEEEEeccchHHHHHHH-HHHHHHH
Confidence 666677777788888889999999999999999 9999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
... ..+.+++||||+|+.++ |+|+.++++++++.-| ..|+|+||+.+.|+.++|+.+...++++-+
T Consensus 113 ~mlGnei~l~IVGNKiDLEee------------R~Vt~qeAe~YAesvG-A~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 113 TMLGNEIELLIVGNKIDLEEE------------RQVTRQEAEAYAESVG-ALYMETSAKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred HHhCCeeEEEEecCcccHHHh------------hhhhHHHHHHHHHhhc-hhheecccccccCHHHHHHHHHHHHHHHhh
Confidence 976 56889999999999876 9999999999999999 489999999999999999999999997654
Q ss_pred C
Q psy9997 321 P 321 (330)
Q Consensus 321 ~ 321 (330)
.
T Consensus 180 ~ 180 (218)
T KOG0088|consen 180 Q 180 (218)
T ss_pred h
Confidence 3
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=230.58 Aligned_cols=107 Identities=43% Similarity=0.718 Sum_probs=87.3
Q ss_pred cCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH-----H--hhhCCCCCcCHH
Q psy9997 207 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE-----K--LAKNKQKPISFE 279 (330)
Q Consensus 207 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~-----~--~~~~~~~~v~~~ 279 (330)
++.+++++|++++|||++++.||+++...|+.++....+++|+++||||+|+........ . .....++.++.+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 455788999999999999999999997469999988777899999999999964210000 0 000124889999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+++++++.++ ++|+|+||++|.||+++|+.++++
T Consensus 161 e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 161 TGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9999999998 599999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=226.08 Aligned_cols=167 Identities=28% Similarity=0.516 Sum_probs=140.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.||..+.|+..+.||+++.+...+.++
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~---------------------------------- 46 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARID---------------------------------- 46 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEEC----------------------------------
Confidence 4689999999999999999999999998888888865554444433
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+.+++|||+|+
T Consensus 47 --------------------------~~~~~l~i~Dt~G~---------------------------------------- 60 (172)
T cd04141 47 --------------------------NEPALLDILDTAGQ---------------------------------------- 60 (172)
T ss_pred --------------------------CEEEEEEEEeCCCc----------------------------------------
Confidence 33445566777777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
+++..++..+++.+|++++|||++++.||+++. .|...+.
T Consensus 61 ---------------------------------------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~-~~~~~i~ 100 (172)
T cd04141 61 ---------------------------------------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEAS-EFKKLIT 100 (172)
T ss_pred ---------------------------------------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHH-HHHHHHH
Confidence 666677777888999999999999999999998 7888777
Q ss_pred hcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+.. .++|+++||||+|+... +.++.++++++++.++ ++|+|+||++|.||+++|+++++.+.+..
T Consensus 101 ~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 101 RVRLTEDIPLVLVGNKVDLESQ------------RQVTTEEGRNLAREFN-CPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred HhcCCCCCCEEEEEEChhhhhc------------CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 642 57999999999999754 7889999999999887 69999999999999999999999988755
Q ss_pred CC
Q psy9997 320 EP 321 (330)
Q Consensus 320 ~~ 321 (330)
.+
T Consensus 168 ~~ 169 (172)
T cd04141 168 SM 169 (172)
T ss_pred cC
Confidence 44
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=228.90 Aligned_cols=174 Identities=71% Similarity=1.202 Sum_probs=153.4
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
|+++|++|||||||+++|..+.|...+.|+.+..+...+.+++..+.+.+|||+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------------ 56 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQ------------------------ 56 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCC------------------------
Confidence 58999999999999999999999999999999888888888898899999999998
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~ 225 (330)
+.|..+++.+++++|++++|||+++
T Consensus 57 -------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 57 -------------------------------------------------------EDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred -------------------------------------------------------cccchhchhhcCCCCEEEEEEECCC
Confidence 5566677778889999999999999
Q ss_pred hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHH
Q psy9997 226 PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305 (330)
Q Consensus 226 ~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 305 (330)
++||+++...|+..+....+++|+++||||+|+..+............+.++.+++.++++.++...|+|+||++|.|++
T Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 161 (174)
T smart00174 82 PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVR 161 (174)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHH
Confidence 99999997579999988878999999999999976544444444555677999999999999986689999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy9997 306 NVFDEAILAALEP 318 (330)
Q Consensus 306 ~~f~~l~~~i~~~ 318 (330)
++|+.+++.++++
T Consensus 162 ~lf~~l~~~~~~~ 174 (174)
T smart00174 162 EVFEEAIRAALNP 174 (174)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988753
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-32 Score=216.70 Aligned_cols=103 Identities=28% Similarity=0.466 Sum_probs=91.7
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--C-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--Q-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~ 277 (330)
|+|+++...||+++-++++|||++|++||+.+. .|+.+...+. + ++.+.|||+|+|+... |+|+
T Consensus 69 erfrsitksyyrnsvgvllvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq------------RqVt 135 (213)
T KOG0091|consen 69 ERFRSITKSYYRNSVGVLLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQSQ------------RQVT 135 (213)
T ss_pred HHHHHHHHHHhhcccceEEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchhhh------------cccc
Confidence 777788888888899999999999999999999 9999876654 2 4567899999999876 9999
Q ss_pred HHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 278 FEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 278 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.||++.|+..+| ..|+|+||++|.||+++|.-+.+.+..
T Consensus 136 ~EEaEklAa~hg-M~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 136 AEEAEKLAASHG-MAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHhcC-ceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 999999999999 699999999999999999988887763
|
|
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-33 Score=215.04 Aligned_cols=162 Identities=27% Similarity=0.510 Sum_probs=148.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-+||+++|+.|||||||++||.++-|++-...|+|..+. +++++++..++++||||+||
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq-------------------- 66 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ-------------------- 66 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch--------------------
Confidence 479999999999999999999999999999999998884 69999999999999999999
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
|+|+++...||+.|+++||+|
T Consensus 67 -----------------------------------------------------------erfrsitqsyyrsahalilvy 87 (213)
T KOG0095|consen 67 -----------------------------------------------------------ERFRSITQSYYRSAHALILVY 87 (213)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhhhcceEEEEE
Confidence 777778888888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++...||+-+. .|+.++.++. .++-.|+||||+|+.+. |+++...++.|++... ..|+|+||+.
T Consensus 88 discqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~dr------------revp~qigeefs~~qd-myfletsake 153 (213)
T KOG0095|consen 88 DISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADR------------REVPQQIGEEFSEAQD-MYFLETSAKE 153 (213)
T ss_pred ecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhh------------hhhhHHHHHHHHHhhh-hhhhhhcccc
Confidence 999999999999 8999999987 46778999999999876 8999999999999976 6899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
..||+++|..+.-.++.
T Consensus 154 a~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 154 ADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999999887763
|
|
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-33 Score=211.78 Aligned_cols=159 Identities=26% Similarity=0.515 Sum_probs=144.0
Q ss_pred EEeecCCCceeEEEEeeccCCC-CCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 67 VVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 67 ~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
+++|++++|||||+-||..+.| ...+.+|+|..|. +.+++++..+.+++|||+||
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------------------- 57 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------------------- 57 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccch-----------------------
Confidence 4789999999999999998887 5677889999885 48889999999999999999
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
|+|++....||++||+.+++||++
T Consensus 58 --------------------------------------------------------erfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 58 --------------------------------------------------------ERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred --------------------------------------------------------HHHhhhhHhhhcccceeeeeeecc
Confidence 667777777888899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 225 SPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
|..||++++ .|+.+|.++. ..+.++++|||+|+.++ |.+..++++.+++.++ +||+|+||++|.|
T Consensus 82 nkasfdn~~-~wlsei~ey~k~~v~l~llgnk~d~a~e------------r~v~~ddg~kla~~y~-ipfmetsaktg~n 147 (192)
T KOG0083|consen 82 NKASFDNCQ-AWLSEIHEYAKEAVALMLLGNKCDLAHE------------RAVKRDDGEKLAEAYG-IPFMETSAKTGFN 147 (192)
T ss_pred cchhHHHHH-HHHHHHHHHHHhhHhHhhhccccccchh------------hccccchHHHHHHHHC-CCceecccccccc
Confidence 999999998 9999999887 57899999999999887 9999999999999998 8999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q psy9997 304 LKNVFDEAILAALEP 318 (330)
Q Consensus 304 v~~~f~~l~~~i~~~ 318 (330)
|+.+|..+...+.+.
T Consensus 148 vd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKL 162 (192)
T ss_pred HhHHHHHHHHHHHHh
Confidence 999999999888754
|
|
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=212.98 Aligned_cols=162 Identities=26% Similarity=0.498 Sum_probs=140.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
||++++|.+|.|||||+.+|..+.|.+...-|++..| ++.+.++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG----------------------------------- 54 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG----------------------------------- 54 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec-----------------------------------
Confidence 7999999999999999999999999887777776544 4444444
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
++.++++||||+||
T Consensus 55 -------------------------gK~vKLQIWDTAGQ----------------------------------------- 68 (214)
T KOG0086|consen 55 -------------------------GKTVKLQIWDTAGQ----------------------------------------- 68 (214)
T ss_pred -------------------------CcEEEEEEeecccH-----------------------------------------
Confidence 44455666688888
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
|+|++..+.||+.|.+.+||||+++++||+.+. .|+..++-
T Consensus 69 --------------------------------------ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLt-nWL~DaR~ 109 (214)
T KOG0086|consen 69 --------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRDSFNALT-NWLTDART 109 (214)
T ss_pred --------------------------------------HHHHHHHHHHhccccceEEEEeccchhhHHHHH-HHHHHHHh
Confidence 777777777888888999999999999999999 99999988
Q ss_pred cC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 243 HC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 243 ~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.. +++.++++|||.|+..+ |+++..|+..|+++.. +.+.|+||++|+||+++|....+.|+.+
T Consensus 110 lAs~nIvviL~GnKkDL~~~------------R~VtflEAs~FaqEne-l~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 110 LASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred hCCCcEEEEEeCChhhcChh------------hhhhHHHHHhhhcccc-eeeeeecccccccHHHHHHHHHHHHHHH
Confidence 76 68899999999999876 9999999999999987 7999999999999999999999998854
|
|
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-32 Score=215.27 Aligned_cols=172 Identities=28% Similarity=0.476 Sum_probs=142.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-+|.+.+|++||||||++.+|..++|...+..|+|.++.. .+..+.. |-..
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~----------gp~g------------------ 60 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSS----------GPGG------------------ 60 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEecc----------CCCC------------------
Confidence 3678899999999999999999999999999999888854 3332210 0000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
-..+.++-+++|||+|||+|+++...++++|-+++|+|
T Consensus 61 ------------------------------------------~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiF 98 (219)
T KOG0081|consen 61 ------------------------------------------GGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIF 98 (219)
T ss_pred ------------------------------------------CCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEE
Confidence 00122344556666666999999999999999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+++.+||-++. .|++++.-+. +++-++++|||+|+... |.|+.+++.+++.+++ +||||+||.
T Consensus 99 DlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~~------------R~Vs~~qa~~La~kyg-lPYfETSA~ 164 (219)
T KOG0081|consen 99 DLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLEDQ------------RVVSEDQAAALADKYG-LPYFETSAC 164 (219)
T ss_pred eccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhhh------------hhhhHHHHHHHHHHhC-CCeeeeccc
Confidence 999999999999 9999998775 78999999999999765 9999999999999999 899999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.||++..+.++..+++.
T Consensus 165 tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999998888777643
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=223.37 Aligned_cols=172 Identities=61% Similarity=1.069 Sum_probs=149.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|++++|++|+|||||+++|..+.|..++.||..+.+...+.+++..+.+++|||+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 58 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ---------------------- 58 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCC----------------------
Confidence 5899999999999999999999999999999998888778888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..+++.+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~a~~~i~v~d~ 81 (173)
T cd04130 59 ---------------------------------------------------------DEFDKLRPLCYPDTDVFLLCFSV 81 (173)
T ss_pred ---------------------------------------------------------hhhccccccccCCCcEEEEEEEC
Confidence 56666777788999999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
+++++|+++.+.|+..+....++.|+++||||+|+..............++.+..++++.+++..+...|+|+||++|.|
T Consensus 82 ~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~ 161 (173)
T cd04130 82 VNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKN 161 (173)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 99999999865799888876678999999999999764333333444456889999999999999866899999999999
Q ss_pred HHHHHHHHHHH
Q psy9997 304 LKNVFDEAILA 314 (330)
Q Consensus 304 v~~~f~~l~~~ 314 (330)
++++|+.++.+
T Consensus 162 v~~lf~~~~~~ 172 (173)
T cd04130 162 LKEVFDTAILA 172 (173)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=230.10 Aligned_cols=163 Identities=26% Similarity=0.413 Sum_probs=143.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|.++.|...+.||++..+. ..+.++ +..+.+.+|||+|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~-------------------- 60 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ-------------------- 60 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--------------------
Confidence 58999999999999999999999999999999987764 467777 78888999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..+++.++++++++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~a~~~ilv~ 81 (201)
T cd04107 61 -----------------------------------------------------------ERFGGMTRVYYRGAVGAIIVF 81 (201)
T ss_pred -----------------------------------------------------------hhhhhhHHHHhCCCCEEEEEE
Confidence 666677777889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc-----CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH-----CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
|+++++||+.+. .|+..+... ..++|+++||||+|+... +.+..+++.++++.++...|+|+
T Consensus 82 D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~ 148 (201)
T cd04107 82 DVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKR------------LAKDGEQMDQFCKENGFIGWFET 148 (201)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcCCceEEEE
Confidence 999999999998 898887653 257899999999999754 67888999999999886689999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+++++.+++.
T Consensus 149 Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 149 SAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=222.66 Aligned_cols=162 Identities=25% Similarity=0.514 Sum_probs=144.4
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||+++|..++|...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------- 61 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ-------------------- 61 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 479999999999999999999999999999999988775 46788888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++...+..+++++|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 62 -----------------------------------------------------------ERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhcCCCEEEEEE
Confidence 666666677888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++++||+.+. .|+..+.... ++.|+++||||+|+..+ +.++.+++..+++..+ ++|+|+||++
T Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 148 (166)
T cd04122 83 DITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ------------RDVTYEEAKQFADENG-LLFLECSAKT 148 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999998 8998886654 57899999999999765 7788899999999887 7999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|..+++.+++
T Consensus 149 ~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 149 GENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988865
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=221.05 Aligned_cols=174 Identities=72% Similarity=1.207 Sum_probs=152.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||+++|..+.|...+.||.++.+...+.+++..+.+.+|||+|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 58 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ---------------------- 58 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 5899999999999999999999999999999998888778888888888999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.|...+..+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~~~ 81 (174)
T cd04135 59 ---------------------------------------------------------EDYDRLRPLSYPMTDVFLICFSV 81 (174)
T ss_pred ---------------------------------------------------------ccccccccccCCCCCEEEEEEEC
Confidence 55556667778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
+++++|+++.+.|+..+....++.|+++||||+|+...............+.++.++++.+++..+...|+|+||++|.|
T Consensus 82 ~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 161 (174)
T cd04135 82 VNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKG 161 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCC
Confidence 99999999976799888877788999999999999765444444555556789999999999999866899999999999
Q ss_pred HHHHHHHHHHHhc
Q psy9997 304 LKNVFDEAILAAL 316 (330)
Q Consensus 304 v~~~f~~l~~~i~ 316 (330)
++++|+.++.+++
T Consensus 162 i~~~f~~~~~~~~ 174 (174)
T cd04135 162 LKTVFDEAILAIL 174 (174)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998864
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=229.35 Aligned_cols=161 Identities=24% Similarity=0.375 Sum_probs=141.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECC-ceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGG-EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|.++.|...|.||++.++ ...+.+++ ..+.+++|||+|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~-------------------- 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ-------------------- 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--------------------
Confidence 5899999999999999999999999999999998655 45677754 5788899999888
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+..++..+++++|++++||
T Consensus 61 -----------------------------------------------------------~~~~~l~~~~~~~ad~iilV~ 81 (215)
T cd04109 61 -----------------------------------------------------------SIGGKMLDKYIYGAHAVFLVY 81 (215)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhhcCCEEEEEE
Confidence 556666677788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
|+++++||+++. .|+..+.+.. .++|+++||||+|+... +.++.+++.++++.++ .+++++|
T Consensus 82 D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~------------~~v~~~~~~~~~~~~~-~~~~~iS 147 (215)
T cd04109 82 DVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHN------------RTVKDDKHARFAQANG-MESCLVS 147 (215)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEE
Confidence 999999999998 8999988764 35789999999999754 7889999999999988 6899999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.++..+..
T Consensus 148 Aktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 148 AKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=217.77 Aligned_cols=169 Identities=27% Similarity=0.504 Sum_probs=134.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||..+.|.++|.||++.++ .+.+.+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~---------------------------------- 46 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRG---------------------------------- 46 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC----------------------------------
Confidence 6999999999999999999999999998999986444 33444443
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+.+++|||+|+
T Consensus 47 --------------------------~~~~l~iwDt~G~----------------------------------------- 59 (182)
T cd04128 47 --------------------------TEITFSIWDLGGQ----------------------------------------- 59 (182)
T ss_pred --------------------------EEEEEEEEeCCCc-----------------------------------------
Confidence 3445666677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
++|..+++.++++||++++|||+++++||+++. .|+..+.+
T Consensus 60 --------------------------------------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~-~~~~~~~~ 100 (182)
T cd04128 60 --------------------------------------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIK-EWYRQARG 100 (182)
T ss_pred --------------------------------------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHH-HHHHHHHH
Confidence 666667777889999999999999999999998 89999887
Q ss_pred cCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 243 HCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 243 ~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
..+ ..| ++||||+|+..+.. ...+....++++.+++.++ .+++++||++|.|++++|+++++.+++.+..
T Consensus 101 ~~~~~~p-ilVgnK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~~ 171 (182)
T cd04128 101 FNKTAIP-ILVGTKYDLFADLP-------PEEQEEITKQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFDLPLT 171 (182)
T ss_pred hCCCCCE-EEEEEchhcccccc-------chhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 654 456 78999999964210 0012223478889999988 6999999999999999999999999875543
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=219.36 Aligned_cols=165 Identities=33% Similarity=0.542 Sum_probs=138.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.||..+.|...+.||++..+.+.+.++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~--------------------------------- 49 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVID--------------------------------- 49 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEEC---------------------------------
Confidence 67899999999999999999999999998888888765554444333
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+..+.+++|||+|+
T Consensus 50 ---------------------------~~~~~l~i~Dt~G~--------------------------------------- 63 (189)
T PTZ00369 50 ---------------------------EETCLLDILDTAGQ--------------------------------------- 63 (189)
T ss_pred ---------------------------CEEEEEEEEeCCCC---------------------------------------
Confidence 33445666788887
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.|..++..+++.+|++++|||++++++|+++. .|+..+
T Consensus 64 ----------------------------------------~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~-~~~~~i 102 (189)
T PTZ00369 64 ----------------------------------------EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIA-SFREQI 102 (189)
T ss_pred ----------------------------------------ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHH-HHHHHH
Confidence 566666777888999999999999999999998 898888
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+.. .++|+++|+||+|+... +.+..+++..+++.++ .+|+++||++|.|++++|.++++.+.+.
T Consensus 103 ~~~~~~~~~piiiv~nK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 103 LRVKDKDRVPMILVGNKCDLDSE------------RQVSTGEGQELAKSFG-IPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred HHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 7653 48899999999999654 6778888999999887 6999999999999999999999888754
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=218.74 Aligned_cols=160 Identities=29% Similarity=0.547 Sum_probs=142.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||++++..+.|...+.||+++.+...+.+++..+.+++|||+|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--------------------- 59 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 37999999999999999999999999999999998888888888998999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++|..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 60 ----------------------------------------------------------EQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred ----------------------------------------------------------cccchHHHHHhhcCCEEEEEEE
Confidence 5666667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+++. .|+..+.... .+.|+++|+||+|+... +.+..+++..+++.++ .+|+++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (163)
T cd04136 82 ITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDE------------RVVSREEGQALARQWG-CPFYETSAKS 147 (163)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceecHHHHHHHHHHcC-CeEEEecCCC
Confidence 99999999998 7888887653 57999999999999754 6678888889999887 7999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|++++..+
T Consensus 148 ~~~v~~l~~~l~~~~ 162 (163)
T cd04136 148 KINVDEVFADLVRQI 162 (163)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=219.62 Aligned_cols=159 Identities=40% Similarity=0.691 Sum_probs=146.7
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
||+++|+.+||||||+++|.++.|.+.+.+|.+..+ ...+.+++..+.+++||++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~---------------------- 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ---------------------- 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------------------
Confidence 899999999999999999999999999999995444 668899999999999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..++..+++++|++|+|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~ii~fd~ 81 (162)
T PF00071_consen 59 ---------------------------------------------------------ERFDSLRDIFYRNSDAIIIVFDV 81 (162)
T ss_dssp ---------------------------------------------------------GGGHHHHHHHHTTESEEEEEEET
T ss_pred ---------------------------------------------------------ccccccccccccccccccccccc
Confidence 66666777789999999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++||+++. .|++.+....+ ++|+++||||+|+... +.++.++++.++++++ .+|+|+||+++.
T Consensus 82 ~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~ 147 (162)
T PF00071_consen 82 TDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDE------------REVSVEEAQEFAKELG-VPYFEVSAKNGE 147 (162)
T ss_dssp TBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGG------------SSSCHHHHHHHHHHTT-SEEEEEBTTTTT
T ss_pred cccccccccc-cccccccccccccccceeeecccccccc------------ccchhhHHHHHHHHhC-CEEEEEECCCCC
Confidence 9999999999 99999998887 7999999999999864 8899999999999999 899999999999
Q ss_pred CHHHHHHHHHHHhc
Q psy9997 303 GLKNVFDEAILAAL 316 (330)
Q Consensus 303 ~v~~~f~~l~~~i~ 316 (330)
|+.++|..+++.++
T Consensus 148 ~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 148 NVKEIFQELIRKIL 161 (162)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=218.29 Aligned_cols=158 Identities=29% Similarity=0.546 Sum_probs=141.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||+++|..+.|...+.||++..+ ...+.+++..+.+++||++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--------------------- 59 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 4899999999999999999999999999999998766 457888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 60 ----------------------------------------------------------ERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred ----------------------------------------------------------HhHHhhHHHHhcCCcEEEEEEE
Confidence 5566666777889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++||+++. .|+..+.... .+.|+++||||.|+... +.+..+++..+++.++ .+|+|+||++|
T Consensus 82 ~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 147 (161)
T cd04117 82 ISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQK------------RQVGDEQGNKLAKEYG-MDFFETSACTN 147 (161)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 99999999998 8999987765 47999999999999765 7888999999999987 79999999999
Q ss_pred CCHHHHHHHHHHH
Q psy9997 302 KGLKNVFDEAILA 314 (330)
Q Consensus 302 ~~v~~~f~~l~~~ 314 (330)
.|++++|++++++
T Consensus 148 ~~v~~~f~~l~~~ 160 (161)
T cd04117 148 SNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999865
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=224.83 Aligned_cols=163 Identities=31% Similarity=0.524 Sum_probs=145.4
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|.++.|...+.||++..+. ..+.+++..+.+.+||++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~------------------- 65 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ------------------- 65 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 4689999999999999999999999999899999987664 57777888888999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..++++++++++|
T Consensus 66 ------------------------------------------------------------~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 66 ------------------------------------------------------------ERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred ------------------------------------------------------------hhHHHHHHHHhCCCcEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+++. .|+..+.......|+++||||+|+... +.+..+++..+++.++ .+|+++||++
T Consensus 86 ~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 151 (199)
T cd04110 86 YDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPER------------KVVETEDAYKFAGQMG-ISLFETSAKE 151 (199)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999999998 899999887788999999999999764 6678889999999887 7899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|++++..+++
T Consensus 152 ~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 152 NINVEEMFNCITELVLR 168 (199)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999999874
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=220.28 Aligned_cols=163 Identities=34% Similarity=0.560 Sum_probs=150.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
...|++++|.+|||||+|+.+|.+..|.+.|.||+++.|.+.+.+++..+.+.|+||+|+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~-------------------- 61 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQ-------------------- 61 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCc--------------------
Confidence 468999999999999999999999999999999999999999999999999999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+..++..++++++++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~gF~lVy 82 (196)
T KOG0395|consen 62 -----------------------------------------------------------EEFSAMRDLYIRNGDGFLLVY 82 (196)
T ss_pred -----------------------------------------------------------ccChHHHHHhhccCcEEEEEE
Confidence 677777888889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
+++++.||+.+. .++..|.+. ...+|+++||||+|+... |+|+.+++++++..++ ++|+|+||+
T Consensus 83 sitd~~SF~~~~-~l~~~I~r~~~~~~~PivlVGNK~Dl~~~------------R~V~~eeg~~la~~~~-~~f~E~Sak 148 (196)
T KOG0395|consen 83 SITDRSSFEEAK-QLREQILRVKGRDDVPIILVGNKCDLERE------------RQVSEEEGKALARSWG-CAFIETSAK 148 (196)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhhCcCCCCEEEEEEcccchhc------------cccCHHHHHHHHHhcC-CcEEEeecc
Confidence 999999999999 788888443 257899999999999876 9999999999999998 679999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
.+.+++++|..+++.+-.
T Consensus 149 ~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 149 LNYNVDEVFYELVREIRL 166 (196)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999998865
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=210.93 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=82.0
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+++.+|++++|||+++++||+++. .|+.++..+. .++|+++||||.|+... .++.++.+++++++++
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~----------~~~~v~~~~~~~~~~~ 130 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISES----------NPRVIDDARARQLCAD 130 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhc----------CCcccCHHHHHHHHHH
Confidence 456789999999999999999998 7999988765 57899999999998532 1278999999999988
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+.+.|+||||++|.||+++|+.+++.
T Consensus 131 ~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 131 MKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred hCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 765799999999999999999999865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=216.91 Aligned_cols=174 Identities=54% Similarity=0.967 Sum_probs=149.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+.||+++|++|||||||+++|.++.|...+.||.+..+...+.+++..+.+.+|||+|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ--------------------- 59 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 36899999999999999999999999999999999888777888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.|...+..++.++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 60 ----------------------------------------------------------EDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred ----------------------------------------------------------hhhhhccccccCCCCEEEEEEE
Confidence 5555566667889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++++|+++.+.|+..+.+...+.|+++|+||+|+.......+.........+..++++++++..+...|+++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 99999999997679998887777899999999999976544333443444567788999999999886789999999999
Q ss_pred CHHHHHHHHHHHh
Q psy9997 303 GLKNVFDEAILAA 315 (330)
Q Consensus 303 ~v~~~f~~l~~~i 315 (330)
|++++|+.+++++
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=225.79 Aligned_cols=169 Identities=25% Similarity=0.427 Sum_probs=132.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|..+.|.. +.||++..+... ....+.+.+|||+|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~---------------------- 54 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGR---------------------- 54 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCc----------------------
Confidence 589999999999999999999999875 578886554321 113566778888877
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..++..+++++|++|+|||+
T Consensus 55 ---------------------------------------------------------e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 55 ---------------------------------------------------------EQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred ---------------------------------------------------------ccchhhHHHHhccCCEEEEEEEC
Confidence 66666677788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchh-------hHHhhhCCCCCcCHHHHHHHHHHhCC-----
Q psy9997 224 VSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPT-------LEKLAKNKQKPISFEQGEKLAKELKA----- 290 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~----- 290 (330)
++++||+++. .|...+.+. ..++|+||||||+|+...... .........++++.+++++++++.+.
T Consensus 78 t~~~Sf~~l~-~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 78 SNVQSLEELE-DRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 9999999998 565555544 367999999999999752110 11112233589999999999998763
Q ss_pred --------eeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 291 --------VKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 291 --------~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
++|+|+||++|.||+++|..+++.++
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998776
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=217.61 Aligned_cols=160 Identities=28% Similarity=0.548 Sum_probs=142.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||++++..+.|.+.+.||++..+...+.+++..+.+++|||+|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--------------------- 59 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 47999999999999999999999999999999999888888888888999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 60 ----------------------------------------------------------EQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred ----------------------------------------------------------ccchhHHHHHHhhCCEEEEEEE
Confidence 6666777778899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+++. .|+..+... ..+.|+++||||+|+... +.+..+++..+++.++ ++|+++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (164)
T cd04175 82 ITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWG-CAFLETSAKA 147 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhc------------cEEcHHHHHHHHHHhC-CEEEEeeCCC
Confidence 99999999998 788887654 368999999999999764 6677788889998887 7999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|.+++..+
T Consensus 148 ~~~v~~~~~~l~~~l 162 (164)
T cd04175 148 KINVNEIFYDLVRQI 162 (164)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=220.45 Aligned_cols=163 Identities=31% Similarity=0.539 Sum_probs=138.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEEC----------CceeeeeeeecCCCccccccCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG----------GEPYTLGLFDTAGQEDYDRLRPL 130 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~----------~~~~~l~i~Dt~g~~~~~~l~~~ 130 (330)
..+||+++|++|||||||+++|....|...+.+|++..+.. .+... +..+.+.+|||+|+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------- 73 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ--------- 73 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh---------
Confidence 45899999999999999999999999999999999876643 34332 23344555555554
Q ss_pred CCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc
Q psy9997 131 SYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS 210 (330)
Q Consensus 131 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~ 210 (330)
+++...+..+
T Consensus 74 ----------------------------------------------------------------------~~~~~~~~~~ 83 (180)
T cd04127 74 ----------------------------------------------------------------------ERFRSLTTAF 83 (180)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 7777788888
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL 288 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 288 (330)
++++|++++|||+++++||.++. .|+..+.... +++|+++||||+|+..+ +.++.+++..+++.+
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~v~~~~~~~~~~~~ 150 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQ------------RQVSEEQAKALADKY 150 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhc------------CccCHHHHHHHHHHc
Confidence 99999999999999999999998 8999987754 57899999999999765 778889999999999
Q ss_pred CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 289 KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 289 ~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+ ++|+++||++|.|++++|+.+++.+++
T Consensus 151 ~-~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 151 G-IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred C-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8 699999999999999999999988865
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=217.12 Aligned_cols=163 Identities=28% Similarity=0.550 Sum_probs=144.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|.+..|.+.+.||.+..+. ..+.+++..+.+++||++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~------------------- 62 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ------------------- 62 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch-------------------
Confidence 3589999999999999999999999999999999987764 47788888889999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 63 ------------------------------------------------------------ERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 55555566678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++++|+++. .|+..+.+.. .++|+++||||+|+.+. +.+..+++.++++.++ .+|+|+||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 148 (167)
T cd01867 83 YDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEK------------RVVSKEEGEALADEYG-IKFLETSAK 148 (167)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999998 7999988765 57999999999999764 6778889999999887 699999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+++++++++
T Consensus 149 ~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 149 ANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998865
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=221.27 Aligned_cols=163 Identities=24% Similarity=0.423 Sum_probs=134.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee-EEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+++||+++|++|||||||+.||..+.|...+.||++..+. ..+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~---------------------------------- 56 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF---------------------------------- 56 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEE----------------------------------
Confidence 56899999999999999999999999999999999863332 1221
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.++..+.+.+|||+|+
T Consensus 57 --------------------------~~~~~~~l~i~Dt~G~-------------------------------------- 72 (219)
T PLN03071 57 --------------------------TNCGKIRFYCWDTAGQ-------------------------------------- 72 (219)
T ss_pred --------------------------ECCeEEEEEEEECCCc--------------------------------------
Confidence 2223455667777777
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
++|..++..+++++|++++|||+++++||+++. .|+.+
T Consensus 73 -----------------------------------------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~-~w~~~ 110 (219)
T PLN03071 73 -----------------------------------------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRD 110 (219)
T ss_pred -----------------------------------------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHH-HHHHH
Confidence 666667777888999999999999999999998 89999
Q ss_pred hhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 240 i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+.+...+.|+++||||+|+.. +.+..+++ .+++..+ +.|+|+||++|.|++++|++++..+++.
T Consensus 111 i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 111 LCRVCENIPIVLCGNKVDVKN-------------RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHHhCCCCcEEEEEEchhhhh-------------ccCCHHHH-HHHHhcC-CEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 988778899999999999953 34455555 6777766 7899999999999999999999999765
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=220.28 Aligned_cols=162 Identities=26% Similarity=0.431 Sum_probs=143.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|.++.|...+.+|.+..+ ...+.+++..+.+++||++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--------------------- 59 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--------------------- 59 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 5899999999999999999999999888999998766 457788888888999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~iilv~d 81 (188)
T cd04125 60 ----------------------------------------------------------ERFRSLNNSYYRGAHGYLLVYD 81 (188)
T ss_pred ----------------------------------------------------------HHHHhhHHHHccCCCEEEEEEE
Confidence 5566667778899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|+++. .|+.++.... .++|+++||||+|+... +.+..+++..+++..+ ++|+|+||++|
T Consensus 82 ~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~evSa~~~ 147 (188)
T cd04125 82 VTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNN------------KVVDSNIAKSFCDSLN-IPFFETSAKQS 147 (188)
T ss_pred CcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 99999999998 7999988764 46899999999999765 6788899999999887 59999999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy9997 302 KGLKNVFDEAILAALEP 318 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~ 318 (330)
.|++++|+.+++.++++
T Consensus 148 ~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 148 INVEEAFILLVKLIIKR 164 (188)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=220.43 Aligned_cols=174 Identities=26% Similarity=0.446 Sum_probs=141.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|..+.|...+.||.+..+ ...+.+++..+.+++|||+|.+.+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~---------------- 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG---------------- 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc----------------
Confidence 5899999999999999999999999999999997554 45777889999999999999843221
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++++ +.......++++|++++|||
T Consensus 65 ------------------------------------------------------~~~~e-~~~~~~~~~~~ad~iilv~D 89 (198)
T cd04142 65 ------------------------------------------------------TAGQE-WMDPRFRGLRNSRAFILVYD 89 (198)
T ss_pred ------------------------------------------------------cchhH-HHHHHHhhhccCCEEEEEEE
Confidence 11112 12223445789999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+++++||+.+. .|+..+.+.. .++|+++||||+|+... +.+..++++.++.+...++|+|+||
T Consensus 90 ~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa 156 (198)
T cd04142 90 ICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRH------------RFAPRHVLSVLVRKSWKCGYLECSA 156 (198)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECcccccc------------ccccHHHHHHHHHHhcCCcEEEecC
Confidence 99999999998 8888876653 57999999999999654 6677788888866443379999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++|.|++++|+.++..++.+.+.
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCCC
Confidence 99999999999999999876554
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=213.44 Aligned_cols=161 Identities=29% Similarity=0.540 Sum_probs=141.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|.+++|...+.||.+..+. .++..++..+.+++|||+|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--------------------- 60 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--------------------- 60 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence 79999999999999999999999999999999987664 46777788889999999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~~~~l~v~d 82 (165)
T cd01865 61 ----------------------------------------------------------ERYRTITTAYYRGAMGFILMYD 82 (165)
T ss_pred ----------------------------------------------------------HHHHHHHHHHccCCcEEEEEEE
Confidence 5566666778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|+.+. .|+..+.+.. .++|+++||||+|+... +.+..+++.++++.++ .+++++||++|
T Consensus 83 ~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (165)
T cd01865 83 ITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDE------------RVVSSERGRQLADQLG-FEFFEASAKEN 148 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CEEEEEECCCC
Confidence 99999999998 8999987765 57999999999999765 6677888999999887 68999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.++..+.+
T Consensus 149 ~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 149 INVKQVFERLVDIICD 164 (165)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887643
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=216.57 Aligned_cols=187 Identities=47% Similarity=0.815 Sum_probs=154.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+.|++++|++|+|||||++++..+.|...+.+|....+...+.+++..+.+.+||++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--------------------- 59 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQ--------------------- 59 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 46999999999999999999998888888888888888777788888888899999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...++.+++.+++++++||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 60 ----------------------------------------------------------EEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred ----------------------------------------------------------hhccccchhhcCCCCEEEEEEE
Confidence 4444444556788999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++++|+++...|+..+.++.+++|+++||||+|+..+....+. ....+.+..+++..+++.++...|+|+||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999976799999888788999999999999643221111 122367788899999999986789999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcccC
Q psy9997 303 GLKNVFDEAILAALEPPEPPKKRKCVLL 330 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~~~~~~~~~~~~ 330 (330)
|++++|+.+.+.++..+...---+|+++
T Consensus 160 ~v~~~f~~l~~~~~~~~~~~~~~~~~~~ 187 (187)
T cd04129 160 GVDDVFEAATRAALLVRKSEPGAGCCII 187 (187)
T ss_pred CHHHHHHHHHHHHhcccCcccccCcccC
Confidence 9999999999888776555555677764
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=213.62 Aligned_cols=161 Identities=27% Similarity=0.539 Sum_probs=143.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|++.+|...+.||++..+ ...+.+++..+.+++|||+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--------------------- 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCcc---------------------
Confidence 5899999999999999999999999999999998877 457888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~D 81 (168)
T cd04119 60 ----------------------------------------------------------PEYLEVRNEFYKDTQGVLLVYD 81 (168)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhccCCEEEEEEE
Confidence 5566667778899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++++++|+.+. .|+.++.+.. .+.|+++|+||+|+... +.+..++++.+++..+ .+++++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 147 (168)
T cd04119 82 VTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH------------RAVSEDEGRLWAESKG-FKYFET 147 (168)
T ss_pred CCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhcccc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence 99999999998 8999987764 36899999999999753 6678889999999887 789999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+++.+++
T Consensus 148 Sa~~~~gi~~l~~~l~~~l~~ 168 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred ECCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999998864
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=214.36 Aligned_cols=163 Identities=29% Similarity=0.509 Sum_probs=140.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
||+++|++|||||||+++|.++.|.++|.||++..+. ..+.+++..+.+++|||+|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ---------------------- 59 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------------------
Confidence 7999999999999999999999999999999987775 57788888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..++..+++++|++++|||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~ad~~ilv~d~ 82 (170)
T cd04108 60 ---------------------------------------------------------ERFKCIASTYYRGAQAIIIVFDL 82 (170)
T ss_pred ---------------------------------------------------------HHHHhhHHHHhcCCCEEEEEEEC
Confidence 66666777788999999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++|+.+. .|+.++.+.. .++|+++||||+|+.... +..+..+++.++++.++ .+|+++||++|
T Consensus 83 ~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g 150 (170)
T cd04108 83 TDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPA----------QYALMEQDAIKLAAEMQ-AEYWSVSALSG 150 (170)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccc----------cccccHHHHHHHHHHcC-CeEEEEECCCC
Confidence 9999999998 8999876543 357899999999996431 12345678888988887 58999999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy9997 302 KGLKNVFDEAILAALEP 318 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~ 318 (330)
.|++++|+.+...+.+.
T Consensus 151 ~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 151 ENVREFFFRVAALTFEL 167 (170)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 99999999999988664
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=218.27 Aligned_cols=162 Identities=28% Similarity=0.547 Sum_probs=141.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|..+.|. ..+.+|++..+. ..+.+++..+.+++|||+|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 60 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ-------------------- 60 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc--------------------
Confidence 58999999999999999999999885 478888887764 46788888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++...+..+++.+|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~ad~~i~v~ 81 (191)
T cd04112 61 -----------------------------------------------------------ERFRSVTHAYYRDAHALLLLY 81 (191)
T ss_pred -----------------------------------------------------------HHHHHhhHHHccCCCEEEEEE
Confidence 555556666788899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++++|+++. .|+..+.... .++|+++||||+|+..+ +.+..+++..+++.++ .+|+|+||++
T Consensus 82 D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~Sa~~ 147 (191)
T cd04112 82 DITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSGE------------RVVKREDGERLAKEYG-VPFMETSAKT 147 (191)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchhc------------cccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 999999999998 7999988876 47899999999999754 6778889999999987 6999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++++|+++++.+.+.
T Consensus 148 ~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 148 GLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988755
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-30 Score=212.53 Aligned_cols=162 Identities=27% Similarity=0.557 Sum_probs=143.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++..+.|...+.+|.+..+ ...+.+++..+.+++||++|+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------------------- 61 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ-------------------- 61 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 47999999999999999999999999888999998766 457778888889999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..++..+++++|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 62 -----------------------------------------------------------ERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred -----------------------------------------------------------HhHHHHHHHHhCcCCEEEEEE
Confidence 556666667788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++++||.++. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++.++ ++|+++||++
T Consensus 83 d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 148 (166)
T cd01869 83 DVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDK------------RVVDYSEAQEFADELG-IPFLETSAKN 148 (166)
T ss_pred ECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECCC
Confidence 999999999998 7999988765 57999999999999765 6788899999999887 6999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|..+++.+.+
T Consensus 149 ~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 149 ATNVEQAFMTMAREIKK 165 (166)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998753
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=206.77 Aligned_cols=160 Identities=30% Similarity=0.558 Sum_probs=133.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.+|.++.|.+.+.||+.+.+...+.+++.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------------------------- 47 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSS--------------------------------- 47 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCE---------------------------------
Confidence 48999999999999999999999999998888876555444444433
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+.+.+|||+|+
T Consensus 48 ---------------------------~~~l~i~Dt~G~----------------------------------------- 59 (163)
T cd04176 48 ---------------------------PSVLEILDTAGT----------------------------------------- 59 (163)
T ss_pred ---------------------------EEEEEEEECCCc-----------------------------------------
Confidence 344566777777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
++|..++..+++++|++++|||+++++||+++. .|+..+.+
T Consensus 60 --------------------------------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~~~~ 100 (163)
T cd04176 60 --------------------------------------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIK-PMRDQIVR 100 (163)
T ss_pred --------------------------------------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHH-HHHHHHHH
Confidence 666667777888999999999999999999998 79888876
Q ss_pred cC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 243 HC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 243 ~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.. .++|+++||||+|+... +.+..+++..+++.++ .+++++||++|.|++++|..+++.+
T Consensus 101 ~~~~~~~piviv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 101 VKGYEKVPIILVGNKVDLESE------------REVSSAEGRALAEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred hcCCCCCCEEEEEECccchhc------------CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 53 58999999999999654 5677788889988887 6999999999999999999998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-30 Score=210.47 Aligned_cols=159 Identities=37% Similarity=0.604 Sum_probs=140.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||+++|.++.|...+.||.++.+...+.+++..+.+++|||+|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 59 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--------------------- 59 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 37999999999999999999999999999999999888778888888888999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..++++++++++|||
T Consensus 60 ----------------------------------------------------------~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 60 ----------------------------------------------------------EEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred ----------------------------------------------------------cchHHHHHHHHhcCCEEEEEEE
Confidence 6666667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++.+|+++. .|+..+.+.. .+.|+++|+||+|+.. +.+..+++..+++.++ .+++++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (162)
T cd04138 82 INSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAA-------------RTVSSRQGQDLAKSYG-IPYIETSAKT 146 (162)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc-------------ceecHHHHHHHHHHhC-CeEEEecCCC
Confidence 99999999998 7888887653 5789999999999964 4567788888988887 6999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+++++.+
T Consensus 147 ~~gi~~l~~~l~~~~ 161 (162)
T cd04138 147 RQGVEEAFYTLVREI 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=211.22 Aligned_cols=161 Identities=25% Similarity=0.439 Sum_probs=136.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++..+.+...+.||.+..+.. .+..++..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--------------------- 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 589999999999999999999999999999999876643 5666778888999999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..++..++..+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (166)
T cd00877 60 ----------------------------------------------------------EKFGGLRDGYYIGGQCAIIMFD 81 (166)
T ss_pred ----------------------------------------------------------hhhccccHHHhcCCCEEEEEEE
Confidence 5555566667889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++. .|+.++.....++|+++||||+|+.. +.+.. ++.++++..+ +.|+|+||++|.
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~-------------~~~~~-~~~~~~~~~~-~~~~e~Sa~~~~ 145 (166)
T cd00877 82 VTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKD-------------RKVKA-KQITFHRKKN-LQYYEISAKSNY 145 (166)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhccc-------------ccCCH-HHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999998 89999988877999999999999963 33333 3456666654 789999999999
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy9997 303 GLKNVFDEAILAALEPP 319 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~ 319 (330)
|++++|+.+++.+++.+
T Consensus 146 ~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 146 NFEKPFLWLARKLLGNP 162 (166)
T ss_pred ChHHHHHHHHHHHHhcc
Confidence 99999999999998754
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-30 Score=217.79 Aligned_cols=155 Identities=24% Similarity=0.455 Sum_probs=135.7
Q ss_pred eecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc
Q psy9997 69 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN 147 (330)
Q Consensus 69 vG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~ 147 (330)
+|+.|||||||+++|..+.|.+.|.||++..+. ..+.+++..+.+.+|||+|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~-------------------------- 54 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ-------------------------- 54 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc--------------------------
Confidence 699999999999999999999999999987774 47788888999999999999
Q ss_pred hhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChh
Q psy9997 148 IRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~ 227 (330)
++|..+++.+++++|++++|||++++.
T Consensus 55 -----------------------------------------------------e~~~~l~~~~~~~ad~~ilV~D~t~~~ 81 (200)
T smart00176 55 -----------------------------------------------------EKFGGLRDGYYIQGQCAIIMFDVTARV 81 (200)
T ss_pred -----------------------------------------------------hhhhhhhHHHhcCCCEEEEEEECCChH
Confidence 666677777888999999999999999
Q ss_pred hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHH
Q psy9997 228 SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNV 307 (330)
Q Consensus 228 s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 307 (330)
||+++. .|+.++.+...++|++|||||+|+.. +.+..++ ..+++..+ +.|+|+||++|.||+++
T Consensus 82 S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 82 TYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKD-------------RKVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKP 145 (200)
T ss_pred HHHHHH-HHHHHHHHhCCCCCEEEEEECccccc-------------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 999998 89999998878999999999999953 3445444 36777776 78999999999999999
Q ss_pred HHHHHHHhcCC
Q psy9997 308 FDEAILAALEP 318 (330)
Q Consensus 308 f~~l~~~i~~~ 318 (330)
|++++..+++.
T Consensus 146 F~~l~~~i~~~ 156 (200)
T smart00176 146 FLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHhc
Confidence 99999999765
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-30 Score=211.55 Aligned_cols=158 Identities=28% Similarity=0.496 Sum_probs=137.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|..+.|...+.||.+..+...+..++..+.+.+|||+|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGS---------------------- 59 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCC----------------------
Confidence 6899999999999999999999999999999998888777777788888999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..++..+++.++++++|||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d~ 82 (165)
T cd04140 60 ---------------------------------------------------------HQFPAMQRLSISKGHAFILVYSV 82 (165)
T ss_pred ---------------------------------------------------------CcchHHHHHHhhcCCEEEEEEEC
Confidence 44555556677889999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 224 VSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
++++||+++. .|+..+.+.. ++.|+++||||+|+... +.+..+++..++..++ +.|+|+||+
T Consensus 83 ~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~SA~ 148 (165)
T cd04140 83 TSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESHK------------REVSSNEGAACATEWN-CAFMETSAK 148 (165)
T ss_pred CCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECcccccc------------CeecHHHHHHHHHHhC-CcEEEeecC
Confidence 9999999998 7877776542 57999999999999654 6788888899998887 689999999
Q ss_pred cCCCHHHHHHHHHHH
Q psy9997 300 TQKGLKNVFDEAILA 314 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~ 314 (330)
+|.|++++|++++..
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999998754
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=209.99 Aligned_cols=158 Identities=29% Similarity=0.529 Sum_probs=139.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC--CceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG--GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+||+++|++|+|||||++++.++.|...+.||++..+. ..+.+. +..+.+++|||+|+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------------------- 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ------------------- 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch-------------------
Confidence 58999999999999999999999999999999987774 456665 67778888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 62 ------------------------------------------------------------EEFDAITKAYYRGAQACILV 81 (162)
T ss_pred ------------------------------------------------------------HHHHHhHHHHhcCCCEEEEE
Confidence 66666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+.+. .|+..+.....+.|+++|+||+|+..+ +.+..+++..+++.++ ++++++||++
T Consensus 82 ~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (162)
T cd04106 82 FSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQ------------AVITNEEAEALAKRLQ-LPLFRTSVKD 147 (162)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECCC
Confidence 9999999999998 899999887789999999999999765 6788889999999987 6999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
|.|++++|+.+...
T Consensus 148 ~~~v~~l~~~l~~~ 161 (162)
T cd04106 148 DFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998754
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=210.51 Aligned_cols=162 Identities=31% Similarity=0.530 Sum_probs=141.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+..+||+++|++|||||||+++|..++|...+.++.+..+ ...+.+++..+.+++||++|+
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------ 64 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ------------------ 64 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh------------------
Confidence 4578999999999999999999999999988889988766 457788899999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++.+|++++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 65 -------------------------------------------------------------ERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred -------------------------------------------------------------HHHHHhHHHHhcCCCEEEE
Confidence 6666677778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
|||+++++||+.+. .|..++.... .+.|+++||||+|+.. +.+..+++++++++++..+|+
T Consensus 84 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 84 TFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPE-------------RQVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECccccc-------------cccCHHHHHHHHHHCCCCeEE
Confidence 99999999999998 8988876543 4689999999999963 678889999999998766899
Q ss_pred EEeeccCCCHHHHHHHHHHHh
Q psy9997 295 ECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i 315 (330)
|+||++|.|++++|+.+++.+
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 999999999999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=210.67 Aligned_cols=161 Identities=32% Similarity=0.561 Sum_probs=141.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||++++.+..+...+.||.++.+...+.+++..+.+++|||+|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~---------------------- 58 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ---------------------- 58 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc----------------------
Confidence 4899999999999999999999999999999998888778888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..++..+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T smart00173 59 ---------------------------------------------------------EEFSAMRDQYMRTGEGFLLVYSI 81 (164)
T ss_pred ---------------------------------------------------------ccchHHHHHHHhhCCEEEEEEEC
Confidence 55556666778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++|+++. .|...+.+.. .+.|+++||||+|+... +.+..+++..+++.++ .+|+++||++|
T Consensus 82 ~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (164)
T smart00173 82 TDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESE------------RVVSTEEGKELARQWG-CPFLETSAKER 147 (164)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceEcHHHHHHHHHHcC-CEEEEeecCCC
Confidence 9999999998 7877776543 47899999999999764 6678888999999887 79999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+++++.+.+
T Consensus 148 ~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 148 VNVDEAFYDLVREIRK 163 (164)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999987653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=193.78 Aligned_cols=104 Identities=18% Similarity=0.413 Sum_probs=92.5
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
|+|+...+.+|+.+.+.++|||++.++++..+. .|+...+... ++..++++|||.|+... |.++++
T Consensus 71 erfravtrsyyrgaagalmvyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~q------------rdv~ye 137 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLESQ------------RDVTYE 137 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhhc------------ccCcHH
Confidence 667777777788888888899999999999998 8998887764 78999999999999765 999999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++.+|+++.| ..|+|+||++|.||+++|.+...++.++
T Consensus 138 eak~faeeng-l~fle~saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 138 EAKEFAEENG-LMFLEASAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred HHHHHHhhcC-eEEEEecccccCcHHHHHHHHHHHHHHh
Confidence 9999999998 7999999999999999999998888743
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=218.53 Aligned_cols=163 Identities=33% Similarity=0.553 Sum_probs=142.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|||||||+++|.++.|...+.||++..+ ...+.+ ++..+.+++|||+|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~------------------- 62 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ------------------- 62 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcc-------------------
Confidence 58999999999999999999999999988899997665 446665 466788888888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 63 ------------------------------------------------------------ERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred ------------------------------------------------------------hhHHHHHHHHhcCCcEEEEE
Confidence 66666677788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||+++++||+++. .|+.++.+.. ..+|+++||||+|+... +.+..+++..+++.++ ++|+|+||
T Consensus 83 ~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa 148 (211)
T cd04111 83 FDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLESQ------------RQVTREEAEKLAKDLG-MKYIETSA 148 (211)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHhC-CEEEEEeC
Confidence 9999999999998 8999887654 36789999999999764 7788999999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 149 k~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988755
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=208.31 Aligned_cols=162 Identities=26% Similarity=0.459 Sum_probs=141.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||++++..+.|...+.+|.+..+ ...+.+++..+.+.+||++|+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------- 62 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ------------------- 62 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------
Confidence 458999999999999999999999999988889987665 457788888888999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 63 ------------------------------------------------------------ERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 55666666778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..+++..+++.++...++|+||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 83 YDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ------------REVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCcEEEEEECC
Confidence 9999999999998 8999987754 58999999999999765 67888899999999886689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++|+.+.+.+
T Consensus 150 ~~~~v~~~~~~l~~~l 165 (165)
T cd01864 150 ESQNVEEAFLLMATEL 165 (165)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=208.04 Aligned_cols=160 Identities=28% Similarity=0.513 Sum_probs=141.6
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++.+..+...+.||.+..+ ...+..++..+.+.+||++|+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~-------------------- 62 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ-------------------- 62 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh--------------------
Confidence 47999999999999999999999999888899998776 447788888888999999988
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..+++.++++++++++||
T Consensus 63 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 63 -----------------------------------------------------------ERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHCCCCEEEEEE
Confidence 556666677788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++.+|+++. .|+..+.+... ++|+++||||+|+... +.+..++.+.+++..+ ++|+|+||++
T Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 149 (165)
T cd01868 84 DITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTEEAKAFAEKNG-LSFIETSALD 149 (165)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------ccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999998 89999888764 5999999999999765 7788889999998876 7899999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+.++..+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=207.94 Aligned_cols=160 Identities=36% Similarity=0.593 Sum_probs=140.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+||+++|++|+|||||++++.+..+...+.+|.++.+.....+++..+.+++|||+|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 60 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--------------------- 60 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 57999999999999999999999999999999998888777888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d 82 (164)
T cd04145 61 ----------------------------------------------------------EEFSAMREQYMRTGEGFLLVFS 82 (164)
T ss_pred ----------------------------------------------------------cchhHHHHHHHhhCCEEEEEEE
Confidence 5555566677889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+++. .|+..+.+.. .+.|+++|+||+|+... +.+..+++.++++.++ .+++++||++
T Consensus 83 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 148 (164)
T cd04145 83 VTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQ------------RKVSREEGQELARKLK-IPYIETSAKD 148 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCcccccc------------ceecHHHHHHHHHHcC-CcEEEeeCCC
Confidence 99999999998 7888877653 57899999999999764 6678888899999887 6999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+.+++.+
T Consensus 149 ~~~i~~l~~~l~~~~ 163 (164)
T cd04145 149 RLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=206.70 Aligned_cols=159 Identities=22% Similarity=0.396 Sum_probs=136.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++..+.|.+.+.++.+..+ ...+.+++..+.+++|||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 59 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 5899999999999999999999999888888886554 446677888888999999888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++|..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd04124 60 ----------------------------------------------------------ERFQTMHASYYHKAHACILVFD 81 (161)
T ss_pred ----------------------------------------------------------hhhhhhhHHHhCCCCEEEEEEE
Confidence 6666777788899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++.+|+++. .|+..+.+..++.|+++|+||+|+... ..++..++++.++ ++++++||++|.
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~~-~~~~~~Sa~~~~ 144 (161)
T cd04124 82 VTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS---------------VTQKKFNFAEKHN-LPLYYVSAADGT 144 (161)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh---------------HHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 99999999998 899999887778999999999998431 1244566777776 689999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q psy9997 303 GLKNVFDEAILAALEP 318 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~ 318 (330)
|++++|+.+++.++++
T Consensus 145 gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 145 NVVKLFQDAIKLAVSY 160 (161)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988765
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=214.62 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=132.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+|+.+.|...|.||+++.+.+.+.+++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~---------------------------------- 46 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGE---------------------------------- 46 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCE----------------------------------
Confidence 6999999999999999999999999988889987655544444433
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
.+.++||||+|+
T Consensus 47 --------------------------~~~l~I~Dt~G~------------------------------------------ 58 (247)
T cd04143 47 --------------------------VYQLDILDTSGN------------------------------------------ 58 (247)
T ss_pred --------------------------EEEEEEEECCCC------------------------------------------
Confidence 345566788777
Q ss_pred eeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc
Q psy9997 164 FISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~ 243 (330)
+.|..++..++.++|++|+|||+++++||+++. .|+.++.+.
T Consensus 59 -------------------------------------~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~-~~~~~I~~~ 100 (247)
T cd04143 59 -------------------------------------HPFPAMRRLSILTGDVFILVFSLDNRESFEEVC-RLREQILET 100 (247)
T ss_pred -------------------------------------hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHH-HHHHHHHHh
Confidence 555556666778899999999999999999998 888887653
Q ss_pred ----------CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 244 ----------CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 244 ----------~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
..++|+|+|+||+|+... +++..+++.+++.....+.|+++||++|.|++++|+.++.
T Consensus 101 k~~~~~~~~~~~~~piIivgNK~Dl~~~------------~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 101 KSCLKNKTKENVKIPMVICGNKADRDFP------------REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred hcccccccccCCCCcEEEEEECccchhc------------cccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 247999999999999754 6678888888877544478999999999999999999998
Q ss_pred HhcCC
Q psy9997 314 AALEP 318 (330)
Q Consensus 314 ~i~~~ 318 (330)
.+.-+
T Consensus 169 ~~~~p 173 (247)
T cd04143 169 LAKLP 173 (247)
T ss_pred Hhccc
Confidence 77433
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=207.32 Aligned_cols=162 Identities=27% Similarity=0.529 Sum_probs=143.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++...++...+.++.+..+. ..+.+++....+.+||++|+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ-------------------- 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 479999999999999999999999999988898887764 46777888888889998888
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..++..+++++|++++||
T Consensus 64 -----------------------------------------------------------~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 64 -----------------------------------------------------------ESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 666666777888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++.||+++. .|+.++.+.. +++|+++|+||.|+... +.++.+++..++...+ ..|+|+||++
T Consensus 85 d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 150 (168)
T cd01866 85 DITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR------------REVSYEEGEAFAKEHG-LIFMETSAKT 150 (168)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999998 8999987764 68999999999999754 6788889999999887 6899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
+.|++++|..+++.+++
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998865
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-29 Score=210.80 Aligned_cols=166 Identities=28% Similarity=0.518 Sum_probs=142.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC-CCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|..++|.. .|.+|++..+. ..+.+++..+.+.+||++|+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~-------------------- 60 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS-------------------- 60 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 589999999999999999999999875 78899988774 57888999999999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..++..+++++|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~~d~iilv~ 81 (193)
T cd04118 61 -----------------------------------------------------------ERYEAMSRIYYRGAKAAIVCY 81 (193)
T ss_pred -----------------------------------------------------------hhhhhhhHhhcCCCCEEEEEE
Confidence 555556666788899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++++.+|+++. .|+..+....++.|+++|+||+|+.... ...+.+..+++..++..++ .+++++||++|
T Consensus 82 d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~--------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (193)
T cd04118 82 DLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQD--------RSLRQVDFHDVQDFADEIK-AQHFETSSKTG 151 (193)
T ss_pred ECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccc--------cccCccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 999999999997 8999988876789999999999986431 1225677788889998887 68999999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy9997 302 KGLKNVFDEAILAALEP 318 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~ 318 (330)
.|++++|+.+.+.+++.
T Consensus 152 ~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 152 QNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999888653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=216.30 Aligned_cols=163 Identities=27% Similarity=0.495 Sum_probs=145.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+++||++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~------------------- 71 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ------------------- 71 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4689999999999999999999999998889999988774 58888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..++++++++++|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 72 ------------------------------------------------------------ERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 66666777788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++++|+++. .|+..+.+.. .++|+++||||+|+... +.+..++++.++..++ ++|+|+||+
T Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~SA~ 157 (216)
T PLN03110 92 YDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RSVAEEDGQALAEKEG-LSFLETSAL 157 (216)
T ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999998 8999988775 47999999999999755 7788899999999887 799999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.++..+.+
T Consensus 158 ~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 158 EATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999888753
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=201.81 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=84.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.+..++..+++++|++++|||++++.+|+.+. .|+..+... .++|+++|+||+|+... +.+..++
T Consensus 65 ~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~------------~~~~~~~ 130 (169)
T cd01892 65 EVAILLNDAELAACDVACLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQ------------QQRYEVQ 130 (169)
T ss_pred ccccccchhhhhcCCEEEEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEccccccc------------ccccccC
Confidence 555666677788999999999999999999997 788766432 47999999999999654 4444456
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
..++++.++...++++||++|.|++++|+.+.+.+++
T Consensus 131 ~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 131 PDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 6778888874457999999999999999999998875
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=205.03 Aligned_cols=159 Identities=25% Similarity=0.503 Sum_probs=140.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++.+..+...+.++.+..+. ..+.+++..+.+++||++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--------------------- 59 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch---------------------
Confidence 58999999999999999999999998889999987764 46777888888899999888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04113 60 ----------------------------------------------------------ERFRSVTRSYYRGAAGALLVYD 81 (161)
T ss_pred ----------------------------------------------------------HHHHHhHHHHhcCCCEEEEEEE
Confidence 5555666777889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|.++. .|+.++.... +++|+++|+||+|+... +.+..+++..+++.++ +.|+++||+++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (161)
T cd04113 82 ITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQ------------REVTFLEASRFAQENG-LLFLETSALTG 147 (161)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchh------------ccCCHHHHHHHHHHcC-CEEEEEECCCC
Confidence 99999999998 8998887654 68999999999999764 7788999999999998 79999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++|+++++.+
T Consensus 148 ~~i~~~~~~~~~~~ 161 (161)
T cd04113 148 ENVEEAFLKCARSI 161 (161)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=205.96 Aligned_cols=161 Identities=31% Similarity=0.527 Sum_probs=143.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||+++|.++.|...+.||.+..+...+.+++..+.+++|||+|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 59 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT---------------------- 59 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 6899999999999999999999999999999998888888888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..+++.+++.++++++|||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~~~~~vlv~~~ 82 (168)
T cd04177 60 ---------------------------------------------------------EQFTAMRELYIKSGQGFLLVYSV 82 (168)
T ss_pred ---------------------------------------------------------ccchhhhHHHHhhCCEEEEEEEC
Confidence 55666677778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++|+.+. .|...+.+.. .++|+++|+||.|+... +.+..+++.++++.++..+++++||++|
T Consensus 83 ~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 83 TSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDD------------RQVSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred CCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 9999999998 7888887643 57999999999999765 6778888889999887678999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy9997 302 KGLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~ 316 (330)
.|++++|++++..++
T Consensus 150 ~~i~~~f~~i~~~~~ 164 (168)
T cd04177 150 TNVDEVFIDLVRQII 164 (168)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=206.38 Aligned_cols=160 Identities=28% Similarity=0.503 Sum_probs=140.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++....|...+.++++..+. ..+.+++..+.+.+||++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 61 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ-------------------- 61 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCCh--------------------
Confidence 479999999999999999999999998888999977664 47788888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~ilv 220 (330)
+++. .++..+++++|++++|
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~d~~i~v 82 (170)
T cd04115 62 -----------------------------------------------------------ERFRKSMVQHYYRNVHAVVFV 82 (170)
T ss_pred -----------------------------------------------------------HHHHHhhHHHhhcCCCEEEEE
Confidence 4443 3556678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|..+. .|+..+.... .++|+++|+||+|+... +++..++++.+++.++ ++|+|+||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa 148 (170)
T cd04115 83 YDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQ------------IQVPTDLAQRFADAHS-MPLFETSA 148 (170)
T ss_pred EECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhh------------cCCCHHHHHHHHHHcC-CcEEEEec
Confidence 9999999999998 8999888764 57999999999999765 7788899999999886 79999999
Q ss_pred cc---CCCHHHHHHHHHHHh
Q psy9997 299 LT---QKGLKNVFDEAILAA 315 (330)
Q Consensus 299 ~~---~~~v~~~f~~l~~~i 315 (330)
++ +.|++++|..+++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999998765
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=206.26 Aligned_cols=160 Identities=33% Similarity=0.495 Sum_probs=137.5
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++++.+.|...+.++.+..+...+.+++..+.+++||++|++.+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------------- 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA-------------------- 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCccc--------------------
Confidence 689999999999999999999999889999988777778888999999999999998320
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+......+++.+|++++|||++
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~d~~i~v~d~~ 82 (165)
T cd04146 61 ----------------------------------------------------------DTEQLERSIRWADGFVLVYSIT 82 (165)
T ss_pred ----------------------------------------------------------ccchHHHHHHhCCEEEEEEECC
Confidence 1122334577899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 225 SPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++||+++. .|+..+.... .++|+++||||+|+... +.+..++++++++.++ .+|+|+||++|
T Consensus 83 ~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 148 (165)
T cd04146 83 DRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHY------------RQVSTEEGEKLASELG-CLFFEVSAAED 148 (165)
T ss_pred CHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHh------------CccCHHHHHHHHHHcC-CEEEEeCCCCC
Confidence 999999998 7988887753 48999999999998654 6788899999999988 69999999999
Q ss_pred C-CHHHHHHHHHHHhc
Q psy9997 302 K-GLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~-~v~~~f~~l~~~i~ 316 (330)
. |++++|+.+++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 5 99999999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=212.41 Aligned_cols=164 Identities=26% Similarity=0.511 Sum_probs=144.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|...+|...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~------------------- 65 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ------------------- 65 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 3589999999999999999999999999889999987774 47778888888999999988
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 66 ------------------------------------------------------------~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 66 ------------------------------------------------------------ESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 55666667778889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++++|+.+. .|+..+.... .+.|+++|+||+|+... +.++.++++++++.++ ++|+|+||+
T Consensus 86 ~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 151 (210)
T PLN03108 86 YDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFMEASAK 151 (210)
T ss_pred EECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999998 7988876654 57999999999999764 7788999999999987 699999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
++.|++++|+++++.++++
T Consensus 152 ~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 152 TAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998754
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=202.38 Aligned_cols=160 Identities=30% Similarity=0.536 Sum_probs=136.3
Q ss_pred EeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+||+++|++|||||||++++..+ .|..++.+|++..+. ..+.++ +..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 62 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ------------------ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH------------------
Confidence 58999999999999999999865 688899999986664 455554 56788888888888
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 63 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 81 (164)
T cd04101 63 -------------------------------------------------------------ELYSDMVSNYWESPSVFIL 81 (164)
T ss_pred -------------------------------------------------------------HHHHHHHHHHhCCCCEEEE
Confidence 5555666677889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++++|.++. .|+..+.....++|+++|+||+|+... +++..++++.++..++ ++++++||+
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (164)
T cd04101 82 VYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADK------------AEVTDAQAQAFAQANQ-LKFFKTSAL 147 (164)
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEeCC
Confidence 99999999999998 899998887678999999999999654 6677777888888777 689999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.++++++
T Consensus 148 ~~~gi~~l~~~l~~~~~ 164 (164)
T cd04101 148 RGVGYEEPFESLARAFH 164 (164)
T ss_pred CCCChHHHHHHHHHHhC
Confidence 99999999999998763
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-28 Score=200.66 Aligned_cols=161 Identities=30% Similarity=0.538 Sum_probs=142.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||++++.+..+...+.++.+..+. ..+..++..+.+.+||++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------------------- 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--------------------- 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence 58999999999999999999999998888888887764 47777888888888998888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T smart00175 60 ----------------------------------------------------------ERFRSITSSYYRGAVGALLVYD 81 (164)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhCCCCEEEEEEE
Confidence 6666677778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++.+++.+. .|+..+..+. +++|+++|+||+|+... +.+..++++.+++.++ ++++|+||++|
T Consensus 82 ~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 147 (164)
T smart00175 82 ITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLEDQ------------RQVSREEAEAFAEEHG-LPFFETSAKTN 147 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcccc------------cCCCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 99999999998 7999988766 68999999999998754 6678888999999887 68999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.++..+.+
T Consensus 148 ~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 148 TNVEEAFEELAREILK 163 (164)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998865
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-28 Score=210.94 Aligned_cols=160 Identities=27% Similarity=0.402 Sum_probs=136.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|..+.|. ..+.++.+ +.+..++.+++....+.+|||+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------------------- 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------------------- 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------------------
Confidence 48999999999999999999988886 77888887 5556788899999999999999992
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc-CCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP-QTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~-~~d~~ilv 220 (330)
. .....++. ++|++++|
T Consensus 62 ------------------------------------------------------------~--~~~~~~~~~~ad~iilV 79 (221)
T cd04148 62 ------------------------------------------------------------M--WTEDSCMQYQGDAFVVV 79 (221)
T ss_pred ------------------------------------------------------------h--HHHhHHhhcCCCEEEEE
Confidence 0 11222344 89999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.||+++. .|+..+.... .++|+|+|+||+|+... +.++.+++.+++..++ ++|+|+||
T Consensus 80 ~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~SA 145 (221)
T cd04148 80 YSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARS------------REVSVQEGRACAVVFD-CKFIETSA 145 (221)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhcccc------------ceecHHHHHHHHHHcC-CeEEEecC
Confidence 9999999999998 7988887754 57999999999999765 7788888999998887 68999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.||+++|+.++..+...
T Consensus 146 ~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 146 GLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999988643
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-28 Score=200.12 Aligned_cols=170 Identities=71% Similarity=1.180 Sum_probs=143.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||+++|.++++...+.|+..+.+...+..++..+.+++||++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~---------------------- 58 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQ---------------------- 58 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 5899999999999999999999999888899998888888888888999999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+...+..+++.+|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 81 (171)
T cd00157 59 ---------------------------------------------------------EEYDRLRPLSYPNTDVFLICFSV 81 (171)
T ss_pred ---------------------------------------------------------ccccccchhhcCCCCEEEEEEEC
Confidence 44555566677899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
+++.+|......|+..+.....+.|+++|+||+|+.......... ......+..+++..++..++..+|+++||++|.|
T Consensus 82 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 82 DSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 999999998867998888877799999999999998653321111 1122456788999999999866999999999999
Q ss_pred HHHHHHHHHH
Q psy9997 304 LKNVFDEAIL 313 (330)
Q Consensus 304 v~~~f~~l~~ 313 (330)
++++|+.+++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=198.47 Aligned_cols=160 Identities=29% Similarity=0.514 Sum_probs=142.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
++||+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~-------------------- 60 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ-------------------- 60 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--------------------
Confidence 47999999999999999999999999888889998776 458888888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++...+..+++++|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 61 -----------------------------------------------------------ERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 555566667788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++++|+... .|+..+.... ..+|+++|+||+|+... +.+..+++..+++.++ ..++++||++
T Consensus 82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (163)
T cd01860 82 DITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESK------------RQVSTEEAQEYADENG-LLFFETSAKT 147 (163)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------CcCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999998 8999887776 67999999999999754 6678888999999988 7899999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|++++..+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=206.83 Aligned_cols=165 Identities=30% Similarity=0.565 Sum_probs=140.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------- 72 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ------------------- 72 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 458999999999999999999999887 467788887664 46778888888999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 73 ------------------------------------------------------------~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 73 ------------------------------------------------------------ERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred ------------------------------------------------------------hhhHHHHHHHHhcCCEEEEE
Confidence 55666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+++.+.|...+.... .+.|+++|+||+|+... +.+..+++..++..++ +.|+|+||
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~SA 159 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------------RDVSREEGMALAKEHG-CLFLECSA 159 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999999999856877766543 46899999999999765 6678888889999887 68999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+...+.+.+
T Consensus 160 k~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 160 KTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999987654
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=198.09 Aligned_cols=164 Identities=29% Similarity=0.546 Sum_probs=140.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++.+.++...+.+|.+..+. ..+.+.+..+.+.+||++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--------------------- 59 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--------------------- 59 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh---------------------
Confidence 58999999999999999999999998888889876664 46778888888888998888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..++..+++++|+++++||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (172)
T cd01862 60 ----------------------------------------------------------ERFQSLGVAFYRGADCCVLVYD 81 (172)
T ss_pred ----------------------------------------------------------HHHHhHHHHHhcCCCEEEEEEE
Confidence 5555666677889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCC-----CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQ-----KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~-----~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++++++|+++. .|...+..... ++|+++|+||+|+..+ +.+..++...+.+..+..+++++|
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 148 (172)
T cd01862 82 VTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEK------------RQVSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcCCceEEEEE
Confidence 99999999987 78887665543 7999999999999754 566778888898888767999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~ 319 (330)
|++|.|++++|+.+++.+++..
T Consensus 149 a~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 149 AKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999988753
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=195.76 Aligned_cols=158 Identities=31% Similarity=0.545 Sum_probs=137.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--------------------- 59 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 3899999999999999999999999888889888766 447778887888999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 60 ----------------------------------------------------------ERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhccCCEEEEEEE
Confidence 5555566667889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|+++. .|+..+.... .+.|+++|+||+|+... +.+..++...+++..+ ..++++||+++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (161)
T cd01861 82 ITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDK------------RQVSTEEGEKKAKELN-AMFIETSAKAG 147 (161)
T ss_pred CcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 99999999998 8998887654 36999999999999654 6778888999998887 78999999999
Q ss_pred CCHHHHHHHHHHH
Q psy9997 302 KGLKNVFDEAILA 314 (330)
Q Consensus 302 ~~v~~~f~~l~~~ 314 (330)
.|++++|.++...
T Consensus 148 ~~v~~l~~~i~~~ 160 (161)
T cd01861 148 HNVKELFRKIASA 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-27 Score=194.91 Aligned_cols=161 Identities=34% Similarity=0.565 Sum_probs=141.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||++++....|...+.++.++.+......++..+.+.+||++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------------------- 58 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ---------------------- 58 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence 4899999999999999999999999999999998888888888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+...+..+++.++++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T cd04139 59 ---------------------------------------------------------EDYAAIRDNYHRSGEGFLLVFSI 81 (164)
T ss_pred ---------------------------------------------------------hhhhHHHHHHhhcCCEEEEEEEC
Confidence 55556667788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++.+|.++. .|+..+... ..++|+++|+||+|+... +....++...+++.++ .+++++||++|
T Consensus 82 ~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (164)
T cd04139 82 TDMESFTATA-EFREQILRVKDDDNVPLLLVGNKCDLEDK------------RQVSSEEAANLARQWG-VPYVETSAKTR 147 (164)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEeeCCCC
Confidence 9999999998 788777765 358999999999999753 4567778888888887 69999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.+.+.+.+
T Consensus 148 ~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 148 QNVEKAFYDLVREIRQ 163 (164)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987753
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-27 Score=193.44 Aligned_cols=158 Identities=27% Similarity=0.547 Sum_probs=136.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+|++++|++|+|||||+++|.+..+...+.|+.+..+. ..+.+++..+.+.+||++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------------------- 59 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 58999999999999999999999998888899987764 46677777888899999888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+......+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd01863 60 ----------------------------------------------------------ERFRTLTSSYYRGAQGVILVYD 81 (161)
T ss_pred ----------------------------------------------------------hhhhhhhHHHhCCCCEEEEEEE
Confidence 5555556667789999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
.+++.+|+.+. .|+..+..+. .++|+++|+||+|+.. +.+..+++..+++..+ ++++++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd01863 82 VTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKEN-------------REVTREEGLKFARKHN-MLFIETSAKT 146 (161)
T ss_pred CCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCcccc-------------cccCHHHHHHHHHHcC-CEEEEEecCC
Confidence 99999999998 7999888764 5799999999999973 5567788999999886 7999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+.+++++
T Consensus 147 ~~gi~~~~~~~~~~~ 161 (161)
T cd01863 147 RDGVQQAFEELVEKI 161 (161)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998763
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=195.51 Aligned_cols=164 Identities=27% Similarity=0.430 Sum_probs=126.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|++++|++|||||||+++|..++|...+.++ ...+.....+++..+.+.+|||+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 57 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSR---------------------- 57 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCc----------------------
Confidence 48999999999999999999999987765443 3444455566777888899999888
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+...+..+++.+|++++|||+
T Consensus 58 ---------------------------------------------------------~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 58 ---------------------------------------------------------PQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred ---------------------------------------------------------hhhhHHHhhhcccCCEEEEEEEC
Confidence 33333334456889999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC-eeEEEEeeccCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA-VKYVECSALTQK 302 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 302 (330)
+++.+|+.+...|+..++....++|+++|+||+|+..... .....++...++..+.. .+++++||++|.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS----------QAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc----------hhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 9999999986579988887777899999999999976411 00123344444444432 379999999999
Q ss_pred CHHHHHHHHHHHhcC
Q psy9997 303 GLKNVFDEAILAALE 317 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~ 317 (330)
|++++|+.+...+++
T Consensus 151 ~v~~lf~~~~~~~~~ 165 (166)
T cd01893 151 NVSEVFYYAQKAVLH 165 (166)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998876
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=197.75 Aligned_cols=174 Identities=29% Similarity=0.500 Sum_probs=146.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
.||+++|++|+|||||++++....+...+.||.+..+...+..++..+.+.+||++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~---------------------- 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ---------------------- 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence 5899999999999999999999999888889988877777888888888899999988
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++...+..++..+++++++||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 82 (180)
T cd04137 60 ---------------------------------------------------------DEYSILPQKYSIGIHGYILVYSV 82 (180)
T ss_pred ---------------------------------------------------------HhhHHHHHHHHhhCCEEEEEEEC
Confidence 55555666678889999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++..+|+.+. .|...+.+.. .+.|+++|+||+|+... +.+..++...+++.++ .+++++||+++
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (180)
T cd04137 83 TSRKSFEVVK-VIYDKILDMLGKESVPIVLVGNKSDLHTQ------------RQVSTEEGKELAESWG-AAFLESSAREN 148 (180)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEchhhhhc------------CccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 9999999998 6766665543 47899999999999654 5667777888888877 68999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCC---CCCCCcccC
Q psy9997 302 KGLKNVFDEAILAALEPPEP---PKKRKCVLL 330 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~~~~---~~~~~~~~~ 330 (330)
.|++++|.++.+.+.+.+.. ..+.+|++|
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T cd04137 149 ENVEEAFELLIEEIEKVENPLDPGQKKKCSIM 180 (180)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence 99999999999888755333 346799987
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=190.70 Aligned_cols=160 Identities=34% Similarity=0.594 Sum_probs=136.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||++++....+...+.++....+ ...+...+....+.+||++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------------------- 59 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ--------------------- 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCch---------------------
Confidence 5899999999999999999999998877777775555 446666777778888888887
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (162)
T cd04123 60 ----------------------------------------------------------ERYHALGPIYYRDADGAILVYD 81 (162)
T ss_pred ----------------------------------------------------------HHHHHhhHHHhccCCEEEEEEE
Confidence 5555666777889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++++.+. .|+.++.+... ++|+++|+||+|+... +++..+++.++++..+ ..++++||+++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 147 (162)
T cd04123 82 ITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQ------------RVVSKSEAEEYAKSVG-AKHFETSAKTG 147 (162)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 99999999998 79988877653 7899999999999754 6677788888888887 68999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy9997 302 KGLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~ 316 (330)
.|++++|+++.+.++
T Consensus 148 ~gi~~~~~~l~~~~~ 162 (162)
T cd04123 148 KGIEELFLSLAKRMI 162 (162)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999988763
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=193.93 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=119.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||++++..+.+. .+.||++..+. .+ ....+.+++|||+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~------------------- 63 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TV--TYKNVKFNVWDVGGQ------------------- 63 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EE--EECCEEEEEEECCCC-------------------
Confidence 46789999999999999999999988875 46788876553 22 234577888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..+++.+++++|++++|
T Consensus 64 ------------------------------------------------------------~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 64 ------------------------------------------------------------DKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 66666667788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhh-c-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH---h-CCeeEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITH-H-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE---L-KAVKYV 294 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~-~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~~~~ 294 (330)
||++++.+|+++. .|+.++.. . ..++|++||+||+|+.. .+..++++.+... . ..+.++
T Consensus 84 ~D~t~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 84 VDSADRDRIDEAR-QELHRIINDREMRDALLLVFANKQDLPD--------------AMKPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred EeCCchhhHHHHH-HHHHHHhcCHhhcCCcEEEEEECcCCcc--------------CCCHHHHHHHcCCCccCCCcEEEE
Confidence 9999999999998 55555443 2 36799999999999963 2455666665431 1 124789
Q ss_pred EEeeccCCCHHHHHHHHHH
Q psy9997 295 ECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~ 313 (330)
++||++|.|++++|++|.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999998864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-27 Score=195.40 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=123.3
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
|+++|++|||||||+++|.++.+...+.||++..+ ..++...+.+.+||++|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~------------------------ 54 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGS------------------------ 54 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCC------------------------
Confidence 78999999999999999999999889999987543 334556677888888887
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~ 225 (330)
+++..++..+++++|++++|||.++
T Consensus 55 -------------------------------------------------------~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 55 -------------------------------------------------------QNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred -------------------------------------------------------cchhHHHHHHHhhCCEEEEEEECCC
Confidence 6666667778899999999999999
Q ss_pred hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC----HHHHHHHHHHhCCeeEEEEeecc-
Q psy9997 226 PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS----FEQGEKLAKELKAVKYVECSALT- 300 (330)
Q Consensus 226 ~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~e~Sa~~- 300 (330)
+.+|..+. .|+..+.....++|+++|+||+|+..+ +.+. ..++..++++.+ +.++++||++
T Consensus 80 ~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~ 145 (164)
T cd04162 80 SERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAA------------RSVQEIHKELELEPIARGRR-WILQGTSLDDD 145 (164)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCC------------CCHHHHHHHhCChhhcCCCc-eEEEEeeecCC
Confidence 99999998 788887665578999999999999654 2221 123455666665 7899999999
Q ss_pred -----CCCHHHHHHHHHH
Q psy9997 301 -----QKGLKNVFDEAIL 313 (330)
Q Consensus 301 -----~~~v~~~f~~l~~ 313 (330)
++||+++|+.++.
T Consensus 146 ~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 146 GSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CChhHHHHHHHHHHHHhc
Confidence 9999999998864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-26 Score=189.22 Aligned_cols=158 Identities=36% Similarity=0.633 Sum_probs=137.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|+|||||++++++..+...+.++.+..+...+..++..+.+++||++|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------------------- 57 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ----------------------- 57 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCCh-----------------------
Confidence 689999999999999999999999999999988766777778877888899999888
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...+..+++.+|++++|||++
T Consensus 58 --------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~ 81 (160)
T cd00876 58 --------------------------------------------------------EEFSAMRDLYIRQGDGFILVYSIT 81 (160)
T ss_pred --------------------------------------------------------HHHHHHHHHHHhcCCEEEEEEECC
Confidence 445555666788899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 225 SPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++.++. .|...+..... .+|+++|+||+|+... +.+..+++..+++.++ .+++++||+++.
T Consensus 82 ~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~~ 147 (160)
T cd00876 82 DRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENE------------RQVSKEEGKALAKEWG-CPFIETSAKDNI 147 (160)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCccccc------------ceecHHHHHHHHHHcC-CcEEEeccCCCC
Confidence 999999998 77777776654 8999999999999764 6678889999999887 799999999999
Q ss_pred CHHHHHHHHHHHh
Q psy9997 303 GLKNVFDEAILAA 315 (330)
Q Consensus 303 ~v~~~f~~l~~~i 315 (330)
|++++|+.+++.+
T Consensus 148 ~i~~l~~~l~~~i 160 (160)
T cd00876 148 NIDEVFKLLVREI 160 (160)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998754
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-26 Score=188.61 Aligned_cols=162 Identities=28% Similarity=0.508 Sum_probs=137.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|++++|++|+|||||++++....+...+.+|++..+ ...+.+++..+.+.+||++|+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~------------------- 66 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ------------------- 66 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 358999999999999999999998888888888887555 446778888888888998888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++.+|++++|
T Consensus 67 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 67 ------------------------------------------------------------ERFRSITQSYYRSANALILT 86 (169)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 55555556678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+.+. .|+.++.... .++|+++|+||+|+... +.+..+....+.+... ..++++||+
T Consensus 87 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~------------~~i~~~~~~~~~~~~~-~~~~~~Sa~ 152 (169)
T cd04114 87 YDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER------------REVSQQRAEEFSDAQD-MYYLETSAK 152 (169)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEeeCC
Confidence 9999999999998 8998887765 47999999999999754 6677777888887776 789999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+.+.++
T Consensus 153 ~~~gv~~l~~~i~~~~~ 169 (169)
T cd04114 153 ESDNVEKLFLDLACRLI 169 (169)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999988654
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=191.20 Aligned_cols=100 Identities=20% Similarity=0.333 Sum_probs=77.4
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc--------------------CCCCcEEEEEeccCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--------------------CQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--------------------~~~~piilV~nK~Dl~~ 260 (330)
++|..+++.+++++|++|+|||+++++||+++. .|+.++... ..++|++|||||+|+..
T Consensus 65 e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 65 ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 777778888999999999999999999999998 999998653 14689999999999976
Q ss_pred CchhhHHhhhCCCCCcCHH----HHHHHHHHhCCeeEEEEeeccCC----------CHHHHHHHHHHH
Q psy9997 261 DAPTLEKLAKNKQKPISFE----QGEKLAKELKAVKYVECSALTQK----------GLKNVFDEAILA 314 (330)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~e~Sa~~~~----------~v~~~f~~l~~~ 314 (330)
+ |.+..+ ....+|++.+ .+.++.+|.+.. .+..+|+.++++
T Consensus 144 ~------------r~~~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 144 E------------KESSGNLVLTARGFVAEQGN-AEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred h------------cccchHHHhhHhhhHHHhcC-CceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 4 444433 3556788887 588888888654 245556555543
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=189.38 Aligned_cols=165 Identities=26% Similarity=0.490 Sum_probs=131.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee-EEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+.+||+++|++|||||||+.||+.+.|.+.|.||++..+. ..+.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------------------- 52 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFY---------------------------------- 52 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE----------------------------------
Confidence 46899999999999999999999999999999999864332 1221
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.++..+.+++|||+|+
T Consensus 53 --------------------------~~~~~i~i~~~Dt~g~-------------------------------------- 68 (215)
T PTZ00132 53 --------------------------TNCGPICFNVWDTAGQ-------------------------------------- 68 (215)
T ss_pred --------------------------ECCeEEEEEEEECCCc--------------------------------------
Confidence 2234456677788877
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+++..++..++.+++++++|||++++.+|..+. .|+..
T Consensus 69 -----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~ 106 (215)
T PTZ00132 69 -----------------------------------------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRD 106 (215)
T ss_pred -----------------------------------------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHH-HHHHH
Confidence 555555666778899999999999999999998 89999
Q ss_pred hhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 240 i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+.....+.|+++||||+|+.. +.+..+. ..+++..+ +.|+++||++|.|++++|.++.++++..+
T Consensus 107 i~~~~~~~~i~lv~nK~Dl~~-------------~~~~~~~-~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 107 IVRVCENIPIVLVGNKVDVKD-------------RQVKARQ-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHhCCCCCEEEEEECccCcc-------------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 887778899999999999854 2333333 35666666 68999999999999999999999998654
Q ss_pred C
Q psy9997 320 E 320 (330)
Q Consensus 320 ~ 320 (330)
.
T Consensus 172 ~ 172 (215)
T PTZ00132 172 N 172 (215)
T ss_pred c
Confidence 3
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=192.03 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=120.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|+.|||||||++++..+.|. .+.||++..+. . ++...+.+++||++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq------------------- 71 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQ------------------- 71 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCC-------------------
Confidence 45689999999999999999999988875 46788876553 2 3334577888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++++.++..+++++|++|+|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 72 ------------------------------------------------------------DKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 66667777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYV 294 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~ 294 (330)
||++++++++++. .++..+... .+++|++||+||+|+... ...++......-. ..+.++
T Consensus 92 ~D~s~~~s~~~~~-~~l~~~l~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 92 VDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred EeCCcHHHHHHHH-HHHHHHhcCHhhCCCCEEEEEECCCCCCC--------------CCHHHHHHHhCccccCCCceEEE
Confidence 9999999999987 565555332 368999999999999643 2333332222111 113467
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++||++|+||+++|+++...+.+
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999988765
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=192.59 Aligned_cols=160 Identities=28% Similarity=0.452 Sum_probs=133.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|....+...+.+|++..+...+.+.+..+.+++||++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------------------- 57 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS----------------------- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCc-----------------------
Confidence 689999999999999999999999988889887666667778888888899999988
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.|..++..++..+|++++|||++
T Consensus 58 --------------------------------------------------------~~~~~~~~~~~~~ad~vilv~d~~ 81 (198)
T cd04147 58 --------------------------------------------------------YSFPAMRKLSIQNSDAFALVYAVD 81 (198)
T ss_pred --------------------------------------------------------hhhhHHHHHHhhcCCEEEEEEECC
Confidence 555556666788999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-HhCCeeEEEEeeccC
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-ELKAVKYVECSALTQ 301 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~e~Sa~~~ 301 (330)
++.+|+.+. .|+..+.... .++|+++|+||+|+... .+.+..+++.+... .++ .+|+++||++|
T Consensus 82 ~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----------~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g 148 (198)
T cd04147 82 DPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEE-----------ERQVPAKDALSTVELDWN-CGFVETSAKDN 148 (198)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccc-----------cccccHHHHHHHHHhhcC-CcEEEecCCCC
Confidence 999999998 8888877654 47999999999999652 14555555555544 334 68999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy9997 302 KGLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~ 316 (330)
.|++++|+++++.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (198)
T cd04147 149 ENVLEVFKELLRQAN 163 (198)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998875
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-26 Score=188.93 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=124.1
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||++++.+..+.. +.||++..+. . ++...+.+.+|||+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~----------------------- 53 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-T--VEYKNLKFTIWDVGGK----------------------- 53 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-E--EEECCEEEEEEECCCC-----------------------
Confidence 68999999999999999999987754 7888876663 2 2334567788888888
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+++...+..+++++|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 54 --------------------------------------------------------HKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred --------------------------------------------------------hhcchHHHHHhccCCEEEEEEeCC
Confidence 555556666788999999999999
Q ss_pred ChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-----CeeEEEEe
Q psy9997 225 SPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-----AVKYVECS 297 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~S 297 (330)
++++|.++. .|+..+.+. ..+.|+++|+||+|+.. .++.++++++++..+ .+.++++|
T Consensus 78 ~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 78 HRDRVSEAH-SELAKLLTEKELRDALLLIFANKQDVAG--------------ALSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred cHHHHHHHH-HHHHHHhcChhhCCCCEEEEEeCcCccc--------------CCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 999999998 777777643 24689999999999953 356677777664322 13688999
Q ss_pred eccCCCHHHHHHHHHHHhcCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~ 319 (330)
|++|.|++++|+++.+.+.+.+
T Consensus 143 a~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999998877654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-26 Score=191.46 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=117.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||++++..+.|. .+.||++..+. .+.. ..+.+.+||++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~------------------- 67 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQ------------------- 67 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCC-------------------
Confidence 45799999999999999999999888774 46788876653 2222 4567788888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 68 ------------------------------------------------------------~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 68 ------------------------------------------------------------DKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ------------------------------------------------------------hhhHHHHHHHhCCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
||+++++++++.. .|+..+... ..++|+++|+||+|+... ...++..... +... +.+
T Consensus 88 ~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~~ 151 (175)
T smart00177 88 VDSNDRDRIDEAR-EELHRMLNEDELRDAVILVFANKQDLPDA--------------MKAAEITEKLGLHSIRDRN-WYI 151 (175)
T ss_pred EECCCHHHHHHHH-HHHHHHhhCHhhcCCcEEEEEeCcCcccC--------------CCHHHHHHHhCccccCCCc-EEE
Confidence 9999999999988 566665432 357999999999999643 1222222211 1112 457
Q ss_pred EEEeeccCCCHHHHHHHHHHHh
Q psy9997 294 VECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+++||++|.|++++|+++...+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=182.32 Aligned_cols=156 Identities=32% Similarity=0.605 Sum_probs=136.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||++++.+..+...+.+|.+..+. ..+..++....+.+||++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--------------------- 59 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--------------------- 59 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh---------------------
Confidence 58999999999999999999999998888888887664 47777777888889998888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+......+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~d 81 (159)
T cd00154 60 ----------------------------------------------------------ERFRSITPSYYRGAHGAILVYD 81 (159)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhcCCCEEEEEEE
Confidence 5555566667888999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
.+++++++.+. .|+..+.... ...|+++|+||+|+..+ .....++...+++.++ .+++++||+++
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~~ 147 (159)
T cd00154 82 ITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLEDQ------------RQVSTEEAQQFAKENG-LLFFETSAKTG 147 (159)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEccccccc------------ccccHHHHHHHHHHcC-CeEEEEecCCC
Confidence 99999999999 7999988876 68999999999999743 5677888999999876 79999999999
Q ss_pred CCHHHHHHHHH
Q psy9997 302 KGLKNVFDEAI 312 (330)
Q Consensus 302 ~~v~~~f~~l~ 312 (330)
.|++++|+.+.
T Consensus 148 ~~i~~~~~~i~ 158 (159)
T cd00154 148 ENVEELFQSLA 158 (159)
T ss_pred CCHHHHHHHHh
Confidence 99999999875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-26 Score=186.48 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=113.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||++++..+.|. .+.||++..+. .+. ...+.+.+||++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~l~D~~G~---------------------- 54 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQ---------------------- 54 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEE--ECCEEEEEEECCCC----------------------
Confidence 58999999999999999999888886 47888876553 232 24577788888887
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..++..+++++|++++|||+
T Consensus 55 ---------------------------------------------------------~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 55 ---------------------------------------------------------DKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred ---------------------------------------------------------HhHHHHHHHHhcCCCEEEEEEeC
Confidence 66666677788999999999999
Q ss_pred CChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHHH---HhCCeeEEEEe
Q psy9997 224 VSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLAK---ELKAVKYVECS 297 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~---~~~~~~~~e~S 297 (330)
+++.+|+++. .|+..+... ..++|+++|+||+|+... ...++ ...+.. ....+.++++|
T Consensus 78 ~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04150 78 NDRERIGEAR-EELQRMLNEDELRDAVLLVFANKQDLPNA--------------MSAAEVTDKLGLHSLRNRNWYIQATC 142 (159)
T ss_pred CCHHHHHHHH-HHHHHHHhcHHhcCCCEEEEEECCCCCCC--------------CCHHHHHHHhCccccCCCCEEEEEee
Confidence 9999999998 555555332 257899999999999642 12222 222211 01124688999
Q ss_pred eccCCCHHHHHHHHHH
Q psy9997 298 ALTQKGLKNVFDEAIL 313 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~ 313 (330)
|++|.|++++|+++..
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999998853
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=188.18 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=119.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++||+++|++|||||||++++..+.|.. +.||.+..+. .+. ...+.+++|||+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~~~l~D~~G~------------------- 71 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLKFTMWDVGGQ------------------- 71 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEEEEEEECCCC-------------------
Confidence 346899999999999999999998888764 6788876653 233 34577888888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++++.++..+++++|++|+|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 72 ------------------------------------------------------------DKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ------------------------------------------------------------HhHHHHHHHHhcCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH-----HHHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL-----AKELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 293 (330)
||++++++|++.. .++..+... ..++|+++|+||.|+... +..++.... ++.. .+.+
T Consensus 92 ~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~l~~~~~~~~-~~~~ 155 (182)
T PTZ00133 92 VDSNDRERIGDAR-EELERMLSEDELRDAVLLVFANKQDLPNA--------------MSTTEVTEKLGLHSVRQR-NWYI 155 (182)
T ss_pred EeCCCHHHHHHHH-HHHHHHHhCHhhcCCCEEEEEeCCCCCCC--------------CCHHHHHHHhCCCcccCC-cEEE
Confidence 9999999999988 555554332 257899999999999643 122222111 1111 1467
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+++...+.+.
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999887654
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=188.32 Aligned_cols=165 Identities=25% Similarity=0.291 Sum_probs=125.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.+||+++|++|||||||++++..+.|... .||.+..... .+.. ++..+.+.+|||+|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------ 62 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ------------------ 62 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCc------------------
Confidence 468999999999999999999999888654 6777654432 3433 345677888888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++++|++++
T Consensus 63 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 63 -------------------------------------------------------------EKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred -------------------------------------------------------------HhHHHHHHHHhccCCEEEE
Confidence 6666666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH--h---CCee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE--L---KAVK 292 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~---~~~~ 292 (330)
|||++++.+++.+. .|+.++.... .+.|+++|+||+|+... +..++..++... . ..++
T Consensus 82 v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd04152 82 VVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNA--------------LSVSEVEKLLALHELSASTPWH 146 (183)
T ss_pred EEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcccc--------------CCHHHHHHHhCccccCCCCceE
Confidence 99999999999987 7887776543 47999999999998632 333444444321 1 1246
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++++||++|.|++++|+.+++.+++.+..
T Consensus 147 ~~~~SA~~~~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 147 VQPACAIIGEGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999998765433
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=193.45 Aligned_cols=155 Identities=16% Similarity=0.303 Sum_probs=116.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+||++||++|||||||+.+|+.+.|...+.+|++..+ .+.+.+++......
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~------------------------- 73 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSN------------------------- 73 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccc-------------------------
Confidence 4579999999999999999999999999999999997554 33444331100000
Q ss_pred EEeeccCCCCCCCCCceeecceEEEE-ECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
.+. -++..+.++||||+|+
T Consensus 74 -----------------------~ik~d~~k~v~LqIWDTAGq------------------------------------- 93 (334)
T PLN00023 74 -----------------------SIKGDSERDFFVELWDVSGH------------------------------------- 93 (334)
T ss_pred -----------------------cccccCCceEEEEEEECCCC-------------------------------------
Confidence 000 0123456777777777
Q ss_pred CCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchh
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVP 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 238 (330)
++|..+++.++++++++|+|||++++++|+++. .|+.
T Consensus 94 ------------------------------------------ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~ 130 (334)
T PLN00023 94 ------------------------------------------ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWAS 130 (334)
T ss_pred ------------------------------------------hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHH
Confidence 777788888899999999999999999999998 8999
Q ss_pred hhhhcC-------------CCCcEEEEEeccCCCCCchhhHHhhhCCCCC---cCHHHHHHHHHHhCCee
Q psy9997 239 EITHHC-------------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKP---ISFEQGEKLAKELKAVK 292 (330)
Q Consensus 239 ~i~~~~-------------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~ 292 (330)
++.... .++|++|||||+|+.... ..+. +..+++++||++++..+
T Consensus 131 eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~---------~~r~~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 131 EVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE---------GTRGSSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred HHHHhcccccccccccccCCCCcEEEEEECccccccc---------cccccccccHHHHHHHHHHcCCCc
Confidence 998753 258999999999996531 0022 47899999999988544
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=179.37 Aligned_cols=143 Identities=26% Similarity=0.456 Sum_probs=124.1
Q ss_pred CCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 86 NKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.|.+.|.||+|..+ ...+.+++..+.+.||||+|+
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~------------------------------------------- 39 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ------------------------------------------- 39 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------------------------------
Confidence 467888999998777 457888999999999999999
Q ss_pred eeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC
Q psy9997 165 ISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~ 244 (330)
+++..+++.++++||++++|||+++++||+++. .|+..+....
T Consensus 40 ------------------------------------e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~~ 82 (176)
T PTZ00099 40 ------------------------------------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNER 82 (176)
T ss_pred ------------------------------------HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHhc
Confidence 666667777889999999999999999999998 8999887654
Q ss_pred -CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 245 -QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 245 -~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.++|++|||||+|+... +.+..+++..+++.++ ..|+|+||++|.||+++|++++..+.+.+++
T Consensus 83 ~~~~piilVgNK~DL~~~------------~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDL------------RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 57899999999999754 6788899999999887 6899999999999999999999998765544
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-26 Score=183.38 Aligned_cols=112 Identities=27% Similarity=0.404 Sum_probs=102.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
..+||++||+.|.++...||+.|.+.+|||+-+|+.||+.+. .|.+.+......+|.++|-||+|+.++
T Consensus 71 ~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlved---------- 139 (246)
T KOG4252|consen 71 SMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVED---------- 139 (246)
T ss_pred HHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHh----------
Confidence 345666666999999999999999999999999999999999 899999998899999999999999987
Q ss_pred CCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 272 KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++..++++.+++.++ ..++.+|++...||..+|..++.++.+
T Consensus 140 --s~~~~~evE~lak~l~-~RlyRtSvked~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 140 --SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNVMHVFAYLAEKLTQ 182 (246)
T ss_pred --hhcchHHHHHHHHHhh-hhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8899999999999998 799999999999999999999888764
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=181.65 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=118.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+..+||+++|++|+|||||++++.+..+ ..+.||.+..+ ..+.++ .+.+.+|||+|+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~------------------ 68 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQ------------------ 68 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCC------------------
Confidence 35568999999999999999999998754 45677776333 234443 466788888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 69 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 69 -------------------------------------------------------------KTLRPYWRNYFESTDALIW 87 (173)
T ss_pred -------------------------------------------------------------HHHHHHHHHHhCCCCEEEE
Confidence 5555555667889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH----hCCeeE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE----LKAVKY 293 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~ 293 (330)
|||++++.+|+++. .|+..+... ..++|+++|+||+|+... ...+++.++.+. ...+++
T Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 88 VVDSSDRLRLDDCK-RELKELLQEERLAGATLLILANKQDLPGA--------------LSEEEIREALELDKISSHHWRI 152 (173)
T ss_pred EEECCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcccccC--------------CCHHHHHHHhCccccCCCceEE
Confidence 99999999999987 677766443 268999999999999653 244455554432 123689
Q ss_pred EEEeeccCCCHHHHHHHHHH
Q psy9997 294 VECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~ 313 (330)
+++||++|.|++++|++++.
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999998864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=202.45 Aligned_cols=169 Identities=19% Similarity=0.223 Sum_probs=116.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|.+|||||||+++|+++.+ ...+..|..+.+...+..++.. +.+|||+|.++....
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~------------- 275 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQ------------- 275 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccc-------------
Confidence 48999999999999999999998864 3444455555556667777665 468999998321100
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~il 219 (330)
..+++.|..++ ..+++++|++++
T Consensus 276 --------------------------------------------------------~~~~e~~~~~~~~~~i~~ad~vil 299 (472)
T PRK03003 276 --------------------------------------------------------ASGHEYYASLRTHAAIEAAEVAVV 299 (472)
T ss_pred --------------------------------------------------------cchHHHHHHHHHHHHHhcCCEEEE
Confidence 01124454443 235789999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+++++. ++..+.. .+.|+|+|+||+|+..... .....++...........+++++||+
T Consensus 300 V~Da~~~~s~~~~~--~~~~~~~--~~~piIiV~NK~Dl~~~~~----------~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 300 LIDASEPISEQDQR--VLSMVIE--AGRALVLAFNKWDLVDEDR----------RYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred EEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCChhH----------HHHHHHHHHHhcccCCCCCEEEEECC
Confidence 99999999988875 5555443 4789999999999975311 11111222222222223589999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+.+.+-
T Consensus 366 ~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 366 TGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987663
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-24 Score=176.60 Aligned_cols=152 Identities=21% Similarity=0.241 Sum_probs=111.9
Q ss_pred eEEEeecCCCceeEEEEeeccCC-CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|+++|++|||||||+++|.... +...+.||++..+.. +....+.+.+|||+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~---~~~~~~~~~l~Dt~G~---------------------- 55 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES---FEKGNLSFTAFDMSGQ---------------------- 55 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE---EEECCEEEEEEECCCC----------------------
Confidence 58999999999999999999876 466778888744322 2234566777777777
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++...+..+++++|++++|||+
T Consensus 56 ---------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 56 ---------------------------------------------------------GKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred ---------------------------------------------------------HhhHHHHHHHHccCCEEEEEEeC
Confidence 55556666778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc----CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH---HHH-HhCCeeEEE
Q psy9997 224 VSPSSFENVKEKWVPEITHH----CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK---LAK-ELKAVKYVE 295 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~----~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~~~~~~e 295 (330)
+++.+|..+. .|+..+.+. ..++|+++|+||+|+.... ..++... +.. ....+.+++
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 79 SDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDAL--------------TAVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred CcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCC--------------CHHHHHHHhCCccccCceEEEEE
Confidence 9999998887 677766543 1479999999999996531 1122111 111 111246899
Q ss_pred EeeccCCCHHHHHHHHHH
Q psy9997 296 CSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~ 313 (330)
+||++|.|++++|+++.+
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 999999999999999864
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=198.53 Aligned_cols=170 Identities=23% Similarity=0.247 Sum_probs=113.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+|++++|.+|+|||||+++++++.. ...+..|..+.+...+..++. .+.+|||+|.+++.....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~----------- 238 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTE----------- 238 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchh-----------
Confidence 47999999999999999999998753 344555555555555555554 678899999854332210
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC-ccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP-LSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~-~~~~~~d~~il 219 (330)
+.|.|...+. ..++.+|++++
T Consensus 239 ----------------------------------------------------------~~e~~~~~~~~~~~~~ad~~il 260 (429)
T TIGR03594 239 ----------------------------------------------------------GVEKYSVLRTLKAIERADVVLL 260 (429)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHHHhCCEEEE
Confidence 0033332222 25788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|++++.+..+.. ++..+.. .+.|+++|+||+|+........ ...++........+..+++++||+
T Consensus 261 V~D~~~~~~~~~~~--~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~vi~~SA~ 327 (429)
T TIGR03594 261 VLDATEGITEQDLR--IAGLILE--AGKALVIVVNKWDLVKDEKTRE---------EFKKELRRKLPFLDFAPIVFISAL 327 (429)
T ss_pred EEECCCCccHHHHH--HHHHHHH--cCCcEEEEEECcccCCCHHHHH---------HHHHHHHHhcccCCCCceEEEeCC
Confidence 99999988887764 4444443 3789999999999972211000 011111111122233689999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+.....
T Consensus 328 ~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 328 TGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-24 Score=178.13 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=116.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
+|+++|++|||||||++++.++ +...+.||++... ..+.. ..+.+++||++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~----------------------- 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGG----------------------- 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCc-----------------------
Confidence 4789999999999999999876 7788889987642 23333 4567788888887
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.++.++..+++++|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 54 --------------------------------------------------------ANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred --------------------------------------------------------HHHHHHHHHHHcCCCEEEEEEECC
Confidence 556666677889999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEEEeeccC
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVECSALTQ 301 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~ 301 (330)
++.+|+++. .|+..+.... .++|+++|+||+|+.......+ .+....+..+++..+ .+.++++||++|
T Consensus 78 ~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~--------i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 78 DDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGAD--------VIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred chhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH--------HHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999998 7888876543 5799999999999976421110 011111223343332 257888999998
Q ss_pred ------CCHHHHHHHHHH
Q psy9997 302 ------KGLKNVFDEAIL 313 (330)
Q Consensus 302 ------~~v~~~f~~l~~ 313 (330)
.|+++.|++|+.
T Consensus 149 ~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 149 LGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCccccCHHHHHHHHhc
Confidence 899999999874
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=174.91 Aligned_cols=153 Identities=21% Similarity=0.307 Sum_probs=114.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
...||+++|++|+|||||++++..+.+.. +.||.+..+.. +..+ .+.+.+||++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~l~D~~G~-------------------- 69 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE-IVYK--NIRFLMWDIGGQ-------------------- 69 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE-EEEC--CeEEEEEECCCC--------------------
Confidence 46899999999999999999999888765 56777766532 2232 466777777777
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..+++++|++++||
T Consensus 70 -----------------------------------------------------------~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 70 -----------------------------------------------------------ESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhhcCCEEEEEE
Confidence 566666677788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHH----HHhCCeeEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLA----KELKAVKYV 294 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~----~~~~~~~~~ 294 (330)
|++++++|.... .++..+.+.. .++|+++|+||+|+... ...++ .+.+. +..+ ++++
T Consensus 91 D~s~~~~~~~~~-~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--------------~~~~~i~~~l~~~~~~~~~-~~~~ 154 (174)
T cd04153 91 DSTDRERLPLTK-EELYKMLAHEDLRKAVLLVLANKQDLKGA--------------MTPAEISESLGLTSIRDHT-WHIQ 154 (174)
T ss_pred ECCCHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCc-eEEE
Confidence 999999998887 5555554332 57999999999998642 22222 22221 2233 5799
Q ss_pred EEeeccCCCHHHHHHHHHH
Q psy9997 295 ECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~ 313 (330)
++||++|.|++++|+.+..
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 9999999999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-24 Score=175.70 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=109.1
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++++|||||++++..+.+. .+.||++..+. . ++.....+++|||+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~----------------------- 53 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-T--VTYKNLKFQVWDLGGQ----------------------- 53 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-E--EEECCEEEEEEECCCC-----------------------
Confidence 6899999999999999999887765 35677665443 2 2234566777887777
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...++.+++.+|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 54 --------------------------------------------------------TSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred --------------------------------------------------------HHHHHHHHHHhcCCCEEEEEEECC
Confidence 556666677888999999999999
Q ss_pred ChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-HHH----HHhCCeeEEEEee
Q psy9997 225 SPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-KLA----KELKAVKYVECSA 298 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~~e~Sa 298 (330)
++.++....+.|...+... ..+.|+++|+||+|+... ...++.. .+. ...+ .+++++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~~~~~Sa 142 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--------------LSEAEISEKLGLSELKDRT-WSIFKTSA 142 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--------------CCHHHHHHHhCccccCCCc-EEEEEeec
Confidence 9999887763343333322 257999999999999643 1112221 111 1112 46999999
Q ss_pred ccCCCHHHHHHHHHH
Q psy9997 299 LTQKGLKNVFDEAIL 313 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~ 313 (330)
++|.|++++|+++++
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-23 Score=178.43 Aligned_cols=180 Identities=31% Similarity=0.454 Sum_probs=140.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+..+||+++|+.|+|||||+++|.++.|...+.+|++..+.. .....+..+.+.+|||+|+
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq------------------ 64 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ------------------ 64 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH------------------
Confidence 445899999999999999999999999999999999888855 5555555777888888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
++++.+++.++..++++++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 65 -------------------------------------------------------------EEYRSLRPEYYRGANGILI 83 (219)
T ss_pred -------------------------------------------------------------HHHHHHHHHHhcCCCEEEE
Confidence 7777778888888999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh--CCeeEEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL--KAVKYVEC 296 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~ 296 (330)
|||.++..++.++...|...+.... ...|+++|+||+|+..+............+....+.....+... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999996666666669999999887 47999999999999987544433322222344444444444433 12349999
Q ss_pred eec--cCCCHHHHHHHHHHHhcCCC
Q psy9997 297 SAL--TQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 297 Sa~--~~~~v~~~f~~l~~~i~~~~ 319 (330)
||+ .+.+++++|..+++.+.+..
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999997543
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=170.58 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=111.5
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|.+..+.. +.||.+..+. .+.. +..+.+.+||++|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~----------------------- 54 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQ----------------------- 54 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCC-----------------------
Confidence 68999999999999999999988764 3577664432 2222 34467777777777
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...+..+++.+|++++|||++
T Consensus 55 --------------------------------------------------------~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 55 --------------------------------------------------------EKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred --------------------------------------------------------HhHHHHHHHHhccCCEEEEEEECC
Confidence 555555666788899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH------HHHHHhCCeeEEEE
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE------KLAKELKAVKYVEC 296 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~e~ 296 (330)
++.++..+. .|+.++.+.. .+.|+++|+||+|+... ...++.. .++...+ ++++++
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~-~~~~~~ 142 (160)
T cd04156 79 DEARLDESQ-KELKHILKNEHIKGVPVVLLANKQDLPGA--------------LTAEEITRRFKLKKYCSDRD-WYVQPC 142 (160)
T ss_pred cHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECcccccC--------------cCHHHHHHHcCCcccCCCCc-EEEEec
Confidence 999999987 6776665432 58999999999999642 1122222 1222222 579999
Q ss_pred eeccCCCHHHHHHHHHH
Q psy9997 297 SALTQKGLKNVFDEAIL 313 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~ 313 (330)
||++|.|++++|+.+.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-23 Score=173.83 Aligned_cols=156 Identities=23% Similarity=0.375 Sum_probs=117.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+..||+++|++|||||||++++.++.+. .+.||.+... ..+.+++ ..+.+||++|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~------------------- 73 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGH------------------- 73 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCC-------------------
Confidence 45789999999999999999999988763 5667765433 2334443 45667777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 74 ------------------------------------------------------------~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 74 ------------------------------------------------------------EQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 55555556678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----------
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL---------- 288 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------- 288 (330)
+|++++.+|.... .|+..+.+.. .+.|+++|+||+|+.. .+..++++++.+..
T Consensus 94 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~pvivv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 94 VDAADPERFQESK-EELDSLLSDEELANVPFLILGNKIDLPG--------------AVSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred EECCcHHHHHHHH-HHHHHHHcCccccCCCEEEEEeCCCCCC--------------CcCHHHHHHHhCcccccccccccc
Confidence 9999999998887 6666665432 5799999999999953 34555665555421
Q ss_pred -----CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 289 -----KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 289 -----~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
....++++||++|.|++++|+++...
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 12569999999999999999999764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=168.78 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=110.7
Q ss_pred eEEEeecCCCceeEEEEeeccCC------CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
+|+++|++|+|||||++++.... +...+.||++..+. .+..+ ...+.+|||+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~----------------- 60 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQ----------------- 60 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCC-----------------
Confidence 58999999999999999987642 23344556555543 23333 456667777776
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++.+|+++
T Consensus 61 --------------------------------------------------------------~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 61 --------------------------------------------------------------ESLRSLWDKYYAECHAII 78 (167)
T ss_pred --------------------------------------------------------------hhhHHHHHHHhCCCCEEE
Confidence 555566666788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh------CC
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL------KA 290 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~ 290 (330)
+|+|.+++++++... .|+..+.+.. .+.|+++|+||+|+... ...++...+.+.. ..
T Consensus 79 ~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 79 YVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANKQDLPDA--------------LSVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred EEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEccccccC--------------CCHHHHHHHhccccccccCCc
Confidence 999999999999987 6776665542 57999999999998643 3334444443321 12
Q ss_pred eeEEEEeeccCCCHHHHHHHHHH
Q psy9997 291 VKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.+++++||++|.|++++|+++..
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 58999999999999999999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=166.64 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=113.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||++++++.. ...+.+|.+..+.. +.++ ...+.+||++|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~----------------------- 53 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET-VEYK--NVSFTVWDVGGQ----------------------- 53 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE-EEEC--CEEEEEEECCCC-----------------------
Confidence 68999999999999999999887 44566666654432 2222 456777777776
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...+..+++.+|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 54 --------------------------------------------------------DKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred --------------------------------------------------------hhhHHHHHHHhccCCEEEEEEECC
Confidence 555566677788999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH----hCCeeEEEEee
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE----LKAVKYVECSA 298 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa 298 (330)
+++++.... .|+..+.... .+.|+++|+||+|+... ...++..+.... ...++++++||
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 78 DRERIEEAK-EELHKLLNEEELKGVPLLIFANKQDLPGA--------------LSVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred CHHHHHHHH-HHHHHHHhCcccCCCcEEEEeeccCCccc--------------cCHHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999987 6766655532 58999999999999753 123333333221 12368999999
Q ss_pred ccCCCHHHHHHHHHH
Q psy9997 299 LTQKGLKNVFDEAIL 313 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~ 313 (330)
++|.|++++|+.++.
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999864
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-22 Score=162.99 Aligned_cols=140 Identities=24% Similarity=0.294 Sum_probs=102.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|.+..+ .+.+|.+..+. . .+|||+|+.. ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~------~-----~~iDt~G~~~---~~---------------- 49 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN------D-----GAIDTPGEYV---EN---------------- 49 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc------C-----eeecCchhhh---hh----------------
Confidence 899999999999999999998875 34455433221 1 5788888710 00
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
++.+..+.+ .++++|++++|||++
T Consensus 50 -------------------------------------------------------~~~~~~~~~-~~~~ad~vilv~d~~ 73 (142)
T TIGR02528 50 -------------------------------------------------------RRLYSALIV-TAADADVIALVQSAT 73 (142)
T ss_pred -------------------------------------------------------HHHHHHHHH-HhhcCCEEEEEecCC
Confidence 022333333 478999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCH
Q psy9997 225 SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 304 (330)
++.++... .|...+ ..|+++|+||+|+.. +....+++.++++..+..+++++||++|.|+
T Consensus 74 ~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 74 DPESRFPP--GFASIF-----VKPVIGLVTKIDLAE-------------ADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred CCCcCCCh--hHHHhc-----cCCeEEEEEeeccCC-------------cccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 99998763 354432 249999999999964 3345677788888877558999999999999
Q ss_pred HHHHHHHH
Q psy9997 305 KNVFDEAI 312 (330)
Q Consensus 305 ~~~f~~l~ 312 (330)
+++|+++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-22 Score=164.17 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=106.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++-+||++|||.+|||||||.||+++.|...|.+||+-.| +++..+.+.++.+++|||++++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE----------------- 82 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------------- 82 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------------
Confidence 3568999999999999999999999999999999998555 8999999999999999999944
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+| +.+.++|||+++++++||| ........+..
T Consensus 83 -------RF------------------------------------rslipsY~Rds~vaviVyD-----it~~~Sfe~t~ 114 (221)
T KOG0094|consen 83 -------RF------------------------------------RSLIPSYIRDSSVAVIVYD-----ITDRNSFENTS 114 (221)
T ss_pred -------HH------------------------------------hhhhhhhccCCeEEEEEEe-----ccccchHHHHH
Confidence 44 6678899999999999998 44444556778
Q ss_pred CcceeeeccCCC-cccccccceeeccCCCcccc
Q psy9997 160 GWFWFISTEHSP-PMKLHTLGFITNINPGWVRD 191 (330)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~ 191 (330)
.|+......... ...+.++|+|+|+...+.+.
T Consensus 115 kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs 147 (221)
T KOG0094|consen 115 KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS 147 (221)
T ss_pred HHHHHHHhccCCCceEEEEEcccccccchhhhh
Confidence 898888776554 57889999999997655443
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-22 Score=167.97 Aligned_cols=156 Identities=19% Similarity=0.287 Sum_probs=114.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|+|||||++++.++.+. .+.||.+.... .+.++ .+.+.+||++|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~------------------- 71 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE-ELAIG--NIKFTTFDLGGH------------------- 71 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE-EEEEC--CEEEEEEECCCC-------------------
Confidence 45689999999999999999999988764 34555543321 22222 356667777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 72 ------------------------------------------------------------QQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 55556666788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----------H
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----------E 287 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~ 287 (330)
+|++++.++.... .++..+.+. ..+.|+++|+||+|+... ++.++..+... .
T Consensus 92 vD~~~~~~~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~--------------~~~~~i~~~l~l~~~~~~~~~~~ 156 (184)
T smart00178 92 VDAYDKERFAESK-RELDALLSDEELATVPFLILGNKIDAPYA--------------ASEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred EECCcHHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCC--------------CCHHHHHHHcCCCcccccccccC
Confidence 9999999999887 566665443 257999999999998532 33333332221 1
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+...++++||++|.|+++++++++.+
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 123569999999999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=184.56 Aligned_cols=168 Identities=20% Similarity=0.250 Sum_probs=108.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|.+|+|||||+++++++.. ......|..+.....+..++ ..+.+|||+|..+......
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~----------- 239 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTE----------- 239 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhh-----------
Confidence 48999999999999999999997642 33344444444444444444 3467899999743221110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC-ccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP-LSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~-~~~~~~d~~il 219 (330)
+.+.|...+. .+++.+|++++
T Consensus 240 ----------------------------------------------------------~~e~~~~~~~~~~~~~ad~~il 261 (435)
T PRK00093 240 ----------------------------------------------------------GVEKYSVIRTLKAIERADVVLL 261 (435)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHCCEEEE
Confidence 0133332221 25678999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|++++.+.++.. ++..+.. .+.|+++|+||+|+..... . ..+ .++...........+++++||+
T Consensus 262 ViD~~~~~~~~~~~--i~~~~~~--~~~~~ivv~NK~Dl~~~~~-~--------~~~-~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 262 VIDATEGITEQDLR--IAGLALE--AGRALVIVVNKWDLVDEKT-M--------EEF-KKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred EEeCCCCCCHHHHH--HHHHHHH--cCCcEEEEEECccCCCHHH-H--------HHH-HHHHHHhcccccCCCEEEEeCC
Confidence 99999988877764 4444433 3689999999999974211 0 011 1112112222234689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++|+.+....
T Consensus 328 ~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 328 TGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999877644
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-21 Score=150.56 Aligned_cols=172 Identities=26% Similarity=0.469 Sum_probs=146.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..-.+||-++||+.+|||||+-+|.++.+.+++..+.|.++. +++.+.+..+.+.|||..|+
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~----------------- 79 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ----------------- 79 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc-----------------
Confidence 345689999999999999999999999999999999999985 59999999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++....+...+++-+++
T Consensus 80 --------------------------------------------------------------~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 80 --------------------------------------------------------------REFINMLPIACKDSVAIL 97 (205)
T ss_pred --------------------------------------------------------------HhhhccCceeecCcEEEE
Confidence 667777788889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
++||++.+++...+. .|+++.+......--|+||+|.|+.-.-+ .+.+.++ ..+++.+|+..++ +.|.+|+
T Consensus 98 FmFDLt~r~TLnSi~-~WY~QAr~~NktAiPilvGTKyD~fi~lp------~e~Q~~I-~~qar~YAk~mnA-sL~F~St 168 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIK-EWYRQARGLNKTAIPILVGTKYDLFIDLP------PELQETI-SRQARKYAKVMNA-SLFFCST 168 (205)
T ss_pred EEEecCchHHHHHHH-HHHHHHhccCCccceEEeccchHhhhcCC------HHHHHHH-HHHHHHHHHHhCC-cEEEeec
Confidence 999999999999999 89999988876666688999999875311 1111222 3568899999985 8889999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..+.||+++|.-++.++++.+
T Consensus 169 s~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred cccccHHHHHHHHHHHHhCCc
Confidence 999999999999999998764
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-22 Score=162.66 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=113.6
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
|+++|++|+|||||++++.+..|...+.||.+..+.. +... .+.+.+||++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~------------------------ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQ------------------------ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCC------------------------
Confidence 7899999999999999999999999999988766653 2222 367888888887
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~ 225 (330)
+.+...+..+++.+|++++|+|+++
T Consensus 55 -------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 55 -------------------------------------------------------PRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred -------------------------------------------------------HhHHHHHHHHHhcCCEEEEEEECCC
Confidence 5555566667889999999999999
Q ss_pred hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeEEEEee
Q psy9997 226 PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKYVECSA 298 (330)
Q Consensus 226 ~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa 298 (330)
+.++.... .|+..+... ..++|+++|+||+|+.... ..++..... ... .++++++||
T Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~Sa 143 (159)
T cd04159 80 RTALEAAK-NELHDLLEKPSLEGIPLLVLGNKNDLPGAL--------------SVDELIEQMNLKSITDR-EVSCYSISC 143 (159)
T ss_pred HHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCCc--------------CHHHHHHHhCcccccCC-ceEEEEEEe
Confidence 99998887 555555432 2578999999999986531 111111111 112 257999999
Q ss_pred ccCCCHHHHHHHHHH
Q psy9997 299 LTQKGLKNVFDEAIL 313 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~ 313 (330)
++|.|++++|+++.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-21 Score=160.41 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=70.9
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.+......+++.+|++++|||+++..+++... .|.... . .++|+++|+||+|+... + ..+.
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~-~--~~~~iiiv~NK~Dl~~~------------~--~~~~ 139 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLAL-E--NNLEIIPVINKIDLPSA------------D--PERV 139 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHH-H--cCCCEEEEEECCCCCcC------------C--HHHH
Confidence 555555566788899999999999887777765 454322 2 47899999999998542 1 1223
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
..++++.++. ..++++||++|.|++++|+.+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 KQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 4456666552 2489999999999999999998875
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-21 Score=191.86 Aligned_cols=170 Identities=22% Similarity=0.193 Sum_probs=115.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|||||||+++++++.. ...+.+|..+.+...+.+++.. +.+|||+|..+...
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~-------------- 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQH-------------- 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcc--------------
Confidence 37999999999999999999999874 4566667666666667777765 45899999732100
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~il 219 (330)
...|.+.|..++ ...++.+|++++
T Consensus 514 -------------------------------------------------------~~~~~e~~~~~r~~~~i~~advvil 538 (712)
T PRK09518 514 -------------------------------------------------------KLTGAEYYSSLRTQAAIERSELALF 538 (712)
T ss_pred -------------------------------------------------------cchhHHHHHHHHHHHHhhcCCEEEE
Confidence 001124444333 234688999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|+++..+++++. ++..+.. .+.|+++|+||+|+..... .....++...........+++++||+
T Consensus 539 ViDat~~~s~~~~~--i~~~~~~--~~~piIiV~NK~DL~~~~~----------~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 539 LFDASQPISEQDLK--VMSMAVD--AGRALVLVFNKWDLMDEFR----------RQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred EEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEEchhcCChhH----------HHHHHHHHHHhccCCCCCCEEEEECC
Confidence 99999998888875 4444433 3789999999999965311 00111111111111122467999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+.+.+.+
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998887654
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=158.22 Aligned_cols=87 Identities=22% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCEEEEEEEcCChhhH--hhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 214 TDVFLVCFSVVSPSSF--ENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~--~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
+|++++|+|++++.++ +... .|+..+.....+.|+++|+||+|+... +.+.. ...+++..+ .
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~--~~~~~~~~~-~ 143 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTF------------EDLSE--IEEEEELEG-E 143 (168)
T ss_pred cCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCch------------hhHHH--HHHhhhhcc-C
Confidence 5899999999988764 5554 688888766668999999999999653 22221 445555443 6
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+++++||++|.|++++|+++.+.++
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 144 EVLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred ceEEEEecccCCHHHHHHHHHHHhC
Confidence 8999999999999999999998764
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-20 Score=142.66 Aligned_cols=104 Identities=23% Similarity=0.364 Sum_probs=91.7
Q ss_pred ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH
Q psy9997 204 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG 281 (330)
Q Consensus 204 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 281 (330)
..+...++.-+|+++|||+..|++||+.+. .+-.+|.++- ..+||++.|||+|+.+. +++..+.+
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rdr~~p------------~~vd~d~A 141 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRDRAEP------------REVDMDVA 141 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhhcccc------------hhcCHHHH
Confidence 456677888899999999999999999998 6667777654 46899999999999876 89999999
Q ss_pred HHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 282 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+.||+.-. +..+|++|++.-.+-+.|..+..++.+++++
T Consensus 142 ~~Wa~rEk-vkl~eVta~dR~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 142 QIWAKREK-VKLWEVTAMDRPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred HHHHhhhh-eeEEEEEeccchhhhhHHHHHHHhccCCccc
Confidence 99999876 8999999999999999999999999887654
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=156.58 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=70.6
Q ss_pred ccCCCEEEEEEEcCCh-hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSP-SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
+..+|++++|+|++++ ++++++. .|..++.... .+.|+++|+||+|+... .. ..+....+..
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------------~~-~~~~~~~~~~ 141 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDE------------EE-LFELLKELLK 141 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCc------------hh-hHHHHHHHHh
Confidence 3469999999999999 8999987 8888887654 36899999999999653 22 2334445555
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.....+++++||+++.|++++|+.+.+.
T Consensus 142 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 142 ELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 5323689999999999999999998764
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-20 Score=157.47 Aligned_cols=157 Identities=22% Similarity=0.340 Sum_probs=117.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|..|+||||+++++..+.+.. ..||.|.... .+.. ....+.+||.+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~-~i~~--~~~~~~~~d~gG~------------------- 68 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE-EIKY--KGYSLTIWDLGGQ------------------- 68 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE-EEEE--TTEEEEEEEESSS-------------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc-eeee--CcEEEEEEecccc-------------------
Confidence 567999999999999999999998766433 5666654432 2333 3455677777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
..++..++.++.++|++|+|
T Consensus 69 ------------------------------------------------------------~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 69 ------------------------------------------------------------ESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp ------------------------------------------------------------GGGGGGGGGGHTTESEEEEE
T ss_pred ------------------------------------------------------------ccccccceeeccccceeEEE
Confidence 66777888888999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH-----hCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE-----LKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~ 293 (330)
.|.++++.+.... ..+..+... ..+.|+++++||+|+... ...++....... ...+.+
T Consensus 89 vDssd~~~l~e~~-~~L~~ll~~~~~~~~piLIl~NK~D~~~~--------------~~~~~i~~~l~l~~l~~~~~~~v 153 (175)
T PF00025_consen 89 VDSSDPERLQEAK-EELKELLNDPELKDIPILILANKQDLPDA--------------MSEEEIKEYLGLEKLKNKRPWSV 153 (175)
T ss_dssp EETTGGGGHHHHH-HHHHHHHTSGGGTTSEEEEEEESTTSTTS--------------STHHHHHHHTTGGGTTSSSCEEE
T ss_pred Eecccceeecccc-cchhhhcchhhcccceEEEEeccccccCc--------------chhhHHHhhhhhhhcccCCceEE
Confidence 9999999888887 444554443 258999999999999754 333443332221 123679
Q ss_pred EEEeeccCCCHHHHHHHHHHHh
Q psy9997 294 VECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+.+||.+|+|+.+.|++|..++
T Consensus 154 ~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 154 FSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHhcC
Confidence 9999999999999999998865
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=156.98 Aligned_cols=152 Identities=21% Similarity=0.289 Sum_probs=108.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+|++++|++|+|||||++++.+..+. .+.||.+..+. .+..+ ...+.+||++|+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~-~i~~~--~~~~~~~D~~G~------------------- 68 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK-TVQSD--GFKLNVWDIGGQ------------------- 68 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEEC--CEEEEEEECCCC-------------------
Confidence 45789999999999999999999987653 35566653332 23333 245667777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++.+|++++|
T Consensus 69 ------------------------------------------------------------~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 69 ------------------------------------------------------------RAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 44545555667889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-------Ce
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-------AV 291 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~ 291 (330)
+|++++.++.... .|+..+... ..++|+++++||+|+.... ..++ +.+..+ ..
T Consensus 89 ~D~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~---i~~~l~~~~~~~~~~ 150 (173)
T cd04155 89 IDSADKKRLEEAG-AELVELLEEEKLAGVPVLVFANKQDLATAA--------------PAEE---IAEALNLHDLRDRTW 150 (173)
T ss_pred EeCCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECCCCccCC--------------CHHH---HHHHcCCcccCCCeE
Confidence 9999999998877 555554433 2479999999999996531 1111 222222 13
Q ss_pred eEEEEeeccCCCHHHHHHHHHH
Q psy9997 292 KYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.++++||++|.|++++|+++++
T Consensus 151 ~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 151 HIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEeECCCCCCHHHHHHHHhc
Confidence 5789999999999999999875
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=152.35 Aligned_cols=156 Identities=38% Similarity=0.562 Sum_probs=116.4
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|+|||||++++....+...+.++.+..+.. .+..++..+.+.+||++|++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~------------------- 61 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE------------------- 61 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc-------------------
Confidence 3799999999999999999999998877887888766655 46677766888889998883
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.+...+..+++++++++.++
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 62 ------------------------------------------------------------DYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred ------------------------------------------------------------cchHHHHHHHhhhhEEEEEE
Confidence 33344444556677777777
Q ss_pred EcCCh-hhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSP-SSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~-~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+... .++.+..+.|+..+..... +.|+++|+||+|+... + .. ++........+..+++++||+
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~-~~-~~~~~~~~~~~~~~~~~~sa~ 147 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDA------------K-LK-THVAFLFAKLNGEPIIPLSAE 147 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcc------------h-hh-HHHHHHHhhccCCceEEeecC
Confidence 77766 6666655456666665554 8999999999999764 2 22 333333444444689999999
Q ss_pred cCCCHHHHHHHH
Q psy9997 300 TQKGLKNVFDEA 311 (330)
Q Consensus 300 ~~~~v~~~f~~l 311 (330)
+|.|++++|+.+
T Consensus 148 ~~~gv~~~~~~l 159 (161)
T TIGR00231 148 TGKNIDSAFKIV 159 (161)
T ss_pred CCCCHHHHHHHh
Confidence 999999999875
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-21 Score=151.57 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=105.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
|||+++|.+|||||||++||..+.|++-.-.|++..| .+++.+.+..+++++||+++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag---------------------- 65 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG---------------------- 65 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc----------------------
Confidence 7999999999999999999999999999999998555 88999999999999999998
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+++| ++++.+|||.|++.+++||.+ . -...+-+++|+
T Consensus 66 --qerf------------------------------------rsitqsyyrsahalilvydis--c---qpsfdclpewl 102 (213)
T KOG0095|consen 66 --QERF------------------------------------RSITQSYYRSAHALILVYDIS--C---QPSFDCLPEWL 102 (213)
T ss_pred --hHHH------------------------------------HHHHHHHhhhcceEEEEEecc--c---CcchhhhHHHH
Confidence 4444 667789999999999999933 3 33445689999
Q ss_pred eeeeccCCCcccccccceeeccCCCccc
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVR 190 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 190 (330)
.+++.......-..++|+|+|+..-+.+
T Consensus 103 reie~yan~kvlkilvgnk~d~~drrev 130 (213)
T KOG0095|consen 103 REIEQYANNKVLKILVGNKIDLADRREV 130 (213)
T ss_pred HHHHHHhhcceEEEeeccccchhhhhhh
Confidence 9999998888888999999999654433
|
|
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-20 Score=145.38 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=122.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.++++|+++|..|+|||+++++|.+.. .+...||.|.+..... .+.+.+++||.+||
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~---~~~~~L~iwDvGGq------------------- 70 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE---YKGYTLNIWDVGGQ------------------- 70 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE---ecceEEEEEEcCCc-------------------
Confidence 458999999999999999999998877 6666777776654422 23466777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
...+..|+.||+++||+|+|
T Consensus 71 ------------------------------------------------------------~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 71 ------------------------------------------------------------KTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred ------------------------------------------------------------chhHHHHHHhhhccCeEEEE
Confidence 66667788899999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC-HHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS-FEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|.+|+..|+...+.+-..+... ....|+++++||.|+..+-+. ..+. .-+...+++... ++.+.|||
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~---------~~i~~~~~L~~l~ks~~-~~l~~cs~ 160 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL---------EEISKALDLEELAKSHH-WRLVKCSA 160 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH---------HHHHHhhCHHHhccccC-ceEEEEec
Confidence 99999999999884333333322 256899999999999854111 1111 112334555555 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
.+|+++.+-+++++..+.+
T Consensus 161 ~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999988865
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=153.55 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred cccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~ 277 (330)
+++......++.++|++++|+|+++ +++++.+. + +.. ....|+++|+||+|+..... ....
T Consensus 62 ~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~--~---~~~-~~~~~~ilv~NK~Dl~~~~~----------~~~~ 125 (164)
T cd04171 62 EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE--I---LEL-LGIKRGLVVLTKADLVDEDW----------LELV 125 (164)
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH--H---HHH-hCCCcEEEEEECccccCHHH----------HHHH
Confidence 5554444456778999999999987 44544443 1 211 12349999999999965310 1112
Q ss_pred HHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 278 FEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 278 ~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.++..++.+.. ...+++++||++|.|++++|+.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 126 EEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 23444444432 2368999999999999999998753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-21 Score=156.85 Aligned_cols=119 Identities=24% Similarity=0.347 Sum_probs=99.2
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCch
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAP 263 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~ 263 (330)
.++.++||++||+++..+...+|+.+.+.++|||+++..+|+.+. .|.+++.... ..+|+++.+||||....+
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a- 151 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA- 151 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHh-
Confidence 345667777777999999999999999999999999999999998 9999987754 368999999999997642
Q ss_pred hhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 264 TLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..-......++++++|...++|+|+|.+.|++|+-..++.+++-+.
T Consensus 152 ----------~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 152 ----------KNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred ----------hhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 1112355667888888788999999999999999999999997554
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-20 Score=149.05 Aligned_cols=162 Identities=25% Similarity=0.384 Sum_probs=130.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCc-eeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..|++++|+.|.|||++++|+..++|.-.|.+|+|......+...+. .+.+..|||+|+|.
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk------------------ 71 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK------------------ 71 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccccee------------------
Confidence 57999999999999999999999999999999999888775544333 57888888888854
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+..++.-+|-++.+.|++|
T Consensus 72 -------------------------------------------------------------~gglrdgyyI~~qcAiimF 90 (216)
T KOG0096|consen 72 -------------------------------------------------------------KGGLRDGYYIQGQCAIIMF 90 (216)
T ss_pred -------------------------------------------------------------ecccccccEEecceeEEEe
Confidence 4444555555678888899
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++.+-++.++. .|.+++.+.+.++||+++|||.|.... ++. .....+-+..+ +.|+++||+++
T Consensus 91 dVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r-------------~~k-~k~v~~~rkkn-l~y~~iSaksn 154 (216)
T KOG0096|consen 91 DVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKAR-------------KVK-AKPVSFHRKKN-LQYYEISAKSN 154 (216)
T ss_pred eeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceecccc-------------ccc-cccceeeeccc-ceeEEeecccc
Confidence 999999999999 999999999999999999999999753 211 11223444444 78999999999
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy9997 302 KGLKNVFDEAILAALEPP 319 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~~ 319 (330)
.|++.-|.++.+++.-.+
T Consensus 155 ~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 155 YNFERPFLWLARKLTGDP 172 (216)
T ss_pred cccccchHHHhhhhcCCC
Confidence 999999999999887543
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-19 Score=143.02 Aligned_cols=161 Identities=18% Similarity=0.215 Sum_probs=121.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.++++|+++|-.++||||++.+|..+++... .||+|.+...... +++.+.+||.+||
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y---kn~~f~vWDvGGq------------------ 71 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY---KNISFTVWDVGGQ------------------ 71 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE---cceEEEEEecCCC------------------
Confidence 56789999999999999999999999987666 8888766544111 1455555555555
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
++++.++..|+.+++++|+
T Consensus 72 -------------------------------------------------------------~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 72 -------------------------------------------------------------EKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred -------------------------------------------------------------cccccchhhhccCCcEEEE
Confidence 7777788888889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYV 294 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~ 294 (330)
|.|.+|++-+....+.+...+.... .+.|+++.+||.|+..+ .+..+..+..... ....+.
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--------------ls~~ei~~~L~l~~l~~~~w~iq 156 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--------------LSAAEITNKLGLHSLRSRNWHIQ 156 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--------------CCHHHHHhHhhhhccCCCCcEEe
Confidence 9999999999998855555544433 58999999999999865 2333322222211 124578
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++|.+|+|+.+.++++...+.+
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred eccccccccHHHHHHHHHHHHhc
Confidence 89999999999999999988754
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-20 Score=156.94 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=102.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||++++.+..+...+.|+.... ...+... .+.+|||+|......+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~------------- 68 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGV------------- 68 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCcccccccc-------------
Confidence 356899999999999999999999988765555544222 1222222 4788999985111100
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc-CC---CE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP-QT---DV 216 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~-~~---d~ 216 (330)
+...+++++..+..++. .+ ++
T Consensus 69 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (201)
T PRK04213 69 -------------------------------------------------------PKEVQEKIKDEIVRYIEDNADRILA 93 (201)
T ss_pred -------------------------------------------------------CHHHHHHHHHHHHHHHHhhhhhheE
Confidence 00002455554444543 34 45
Q ss_pred EEEEEEcCChhhHhhhhhcchhh--------hhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPE--------ITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~--------i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
+++|.|. .++.++...|... +... ..++|+++|+||+|+... + .+.+.++++
T Consensus 94 vi~v~d~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~------------~---~~~~~~~~~ 155 (201)
T PRK04213 94 AVLVVDG---KSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN------------R---DEVLDEIAE 155 (201)
T ss_pred EEEEEeC---ccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc------------H---HHHHHHHHH
Confidence 5555554 4444332233211 1111 147999999999999653 1 345556666
Q ss_pred HhCC--------eeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 287 ELKA--------VKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 287 ~~~~--------~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++. .+++++||++| |++++|+.+...+-+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 6652 15899999999 999999999988644
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-20 Score=144.58 Aligned_cols=114 Identities=28% Similarity=0.515 Sum_probs=84.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
||+|+|+.|||||||+++|.+..+. ..+.++.+..+. ....+......+.+||++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------- 60 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ-------------------- 60 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--------------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--------------------
Confidence 7999999999999999999998876 222233333333 24455555555777777777
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..++..+|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~ 81 (119)
T PF08477_consen 61 -----------------------------------------------------------EEFYSQHQFFLKKADAVILVY 81 (119)
T ss_dssp -----------------------------------------------------------HCHHCTSHHHHHHSCEEEEEE
T ss_pred -----------------------------------------------------------ceecccccchhhcCcEEEEEE
Confidence 555555555688999999999
Q ss_pred EcCChhhHhhhhh--cchhhhhhcCCCCcEEEEEeccC
Q psy9997 222 SVVSPSSFENVKE--KWVPEITHHCQKTPFLLVGTQID 257 (330)
Q Consensus 222 d~~~~~s~~~~~~--~~~~~i~~~~~~~piilV~nK~D 257 (330)
|+++++||+++.+ .|+..+.....++|+++||||.|
T Consensus 82 D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 82 DLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999753 36777777777899999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-19 Score=162.10 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=76.8
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
.++.++++++|+|++++++++++. .|..++..+. .+.|+++|+||+|+... ..+..++.+.+++
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~------------~~~~~~~~~~~~~ 299 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDE------------EEEREKRAALELA 299 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCc------------hhHHHHHHHHHHH
Confidence 356799999999999988999997 8999988764 37899999999999754 2333344555555
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..+ .+++++||+++.|++++|+.+...+.+.+
T Consensus 300 ~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 300 ALG-GPVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred hcC-CCEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 554 68999999999999999999998876543
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-19 Score=151.01 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=108.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCC--CCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSE--YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.++|+++|++|||||||++++.+..+... +.+|... ....+..++. ..+.+|||+|......-
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~------------- 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPH------------- 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCH-------------
Confidence 47999999999999999999998874322 2233322 2223334332 36788999997210000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+ -.+.+.... ..+.++|++++|
T Consensus 106 --------------------~-------------------------------------~~~~~~~~~-~~~~~~d~ii~v 127 (204)
T cd01878 106 --------------------Q-------------------------------------LVEAFRSTL-EEVAEADLLLHV 127 (204)
T ss_pred --------------------H-------------------------------------HHHHHHHHH-HHHhcCCeEEEE
Confidence 0 001122111 135679999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
+|++++.++.+.. .|...+.... .+.|+++|+||+|+.... ... .++...+ .+++++||+
T Consensus 128 ~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~------------~~~-----~~~~~~~-~~~~~~Sa~ 188 (204)
T cd01878 128 VDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDE------------ELE-----ERLEAGR-PDAVFISAK 188 (204)
T ss_pred EECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChH------------HHH-----HHhhcCC-CceEEEEcC
Confidence 9999999998876 6776666543 468999999999996541 111 3334433 689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++|+.+...+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999987653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-19 Score=149.14 Aligned_cols=120 Identities=53% Similarity=0.936 Sum_probs=103.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+|+++|||++||||||+..|..+.|+.+|.||++++|+..+.++ ++++.+.+|||++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG------------------- 62 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAG------------------- 62 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCC-------------------
Confidence 46799999999999999999999999999999999999999999995 9999999999998
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+++| +.+++..|+++|.++++|+ ..++....+-..
T Consensus 63 ---------qedY--------------------------------DrlRplsY~~tdvfl~cfs----v~~p~S~~nv~~ 97 (198)
T KOG0393|consen 63 ---------QEDY--------------------------------DRLRPLSYPQTDVFLLCFS----VVSPESFENVKS 97 (198)
T ss_pred ---------Cccc--------------------------------ccccccCCCCCCEEEEEEE----cCChhhHHHHHh
Confidence 3333 3367779999999999997 445555556678
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|++++ .+++|..|+.++|++.|+.
T Consensus 98 kW~pEi-~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 98 KWIPEI-KHHCPNVPIILVGTKADLR 122 (198)
T ss_pred hhhHHH-HhhCCCCCEEEEeehHHhh
Confidence 887744 3566999999999999995
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=139.68 Aligned_cols=152 Identities=41% Similarity=0.667 Sum_probs=111.5
Q ss_pred EeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 68 VVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 68 vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
++|++|+|||||++++.+... .....+|....+.......+....+.+||++|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~------------------------- 55 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQ------------------------- 55 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCCh-------------------------
Confidence 589999999999999998876 566666663334446666667788888888887
Q ss_pred chhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCCh
Q psy9997 147 NIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~ 226 (330)
..+......+++.+|++++|+|++++
T Consensus 56 ------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~ 81 (157)
T cd00882 56 ------------------------------------------------------ERFRSLRRLYYRGADGIILVYDVTDR 81 (157)
T ss_pred ------------------------------------------------------HHHHhHHHHHhcCCCEEEEEEECcCH
Confidence 33333335567789999999999999
Q ss_pred hhHhhhhhcc--hhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHHHHhCCeeEEEEeeccCCC
Q psy9997 227 SSFENVKEKW--VPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 227 ~s~~~~~~~~--~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
.++.... .| .........+.|+++|+||+|+.... ...... ...+... ...+++++||..+.|
T Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 147 (157)
T cd00882 82 ESFENVK-EWLLLILINKEGENIPIILVGNKIDLPEER------------VVSEEELAEQLAKE-LGVPYFETSAKTGEN 147 (157)
T ss_pred HHHHHHH-HHHHHHHHhhccCCCcEEEEEecccccccc------------chHHHHHHHHHHhh-cCCcEEEEecCCCCC
Confidence 9999987 55 22223334689999999999997642 111111 2333333 347999999999999
Q ss_pred HHHHHHHHH
Q psy9997 304 LKNVFDEAI 312 (330)
Q Consensus 304 v~~~f~~l~ 312 (330)
++++++++.
T Consensus 148 i~~~~~~l~ 156 (157)
T cd00882 148 VEELFEELA 156 (157)
T ss_pred hHHHHHHHh
Confidence 999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=143.67 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=99.4
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.|+++|++|+|||||+++|...++...+.++....+. ..+..+ +....+.+|||+|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--------------------- 60 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--------------------- 60 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCc---------------------
Confidence 4899999999999999999998876554333322221 122222 13445566666666
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..++..+|++++|+|
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~d~il~v~d 82 (168)
T cd01887 61 ----------------------------------------------------------EAFTNMRARGASLTDIAILVVA 82 (168)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHhhcCEEEEEEE
Confidence 5555555566778999999999
Q ss_pred cCCh---hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH----H-hCCeeEE
Q psy9997 223 VVSP---SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK----E-LKAVKYV 294 (330)
Q Consensus 223 ~~~~---~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~-~~~~~~~ 294 (330)
+++. +++..+. .+.. .+.|+++|+||+|+...... .+ .++...+.. . ...++++
T Consensus 83 ~~~~~~~~~~~~~~-----~~~~--~~~p~ivv~NK~Dl~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01887 83 ADDGVMPQTIEAIK-----LAKA--ANVPFIVALNKIDKPNANPE----------RV-KNELSELGLQGEDEWGGDVQIV 144 (168)
T ss_pred CCCCccHHHHHHHH-----HHHH--cCCCEEEEEEceecccccHH----------HH-HHHHHHhhccccccccCcCcEE
Confidence 9874 3333332 2222 47899999999999643110 00 011111111 1 1125799
Q ss_pred EEeeccCCCHHHHHHHHHHHhc
Q psy9997 295 ECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
++||++|.|++++|+.+.+...
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 145 PTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred EeecccCCCHHHHHHHHHHhhh
Confidence 9999999999999999987653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=152.19 Aligned_cols=172 Identities=23% Similarity=0.255 Sum_probs=122.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+|++++|.+|+|||||+|+++++. ..+....|.-+.....++.+++.+ .+.||+|.++-.....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e---------- 244 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITE---------- 244 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCccccccc----------
Confidence 35999999999999999999999876 355666777777788888877764 5689999855332221
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc-cccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL-SYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~-~~~~~d~~i 218 (330)
++|.|+..+.. .+..+|.++
T Consensus 245 -----------------------------------------------------------~~E~~Sv~rt~~aI~~a~vvl 265 (444)
T COG1160 245 -----------------------------------------------------------SVEKYSVARTLKAIERADVVL 265 (444)
T ss_pred -----------------------------------------------------------ceEEEeehhhHhHHhhcCEEE
Confidence 12555544333 467899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|.|.+.+-+-++.. ....+.+ ...++++|.||+|+.+..... .....++......+.+..+.+.+||
T Consensus 266 lviDa~~~~~~qD~~--ia~~i~~--~g~~~vIvvNKWDl~~~~~~~--------~~~~k~~i~~~l~~l~~a~i~~iSA 333 (444)
T COG1160 266 LVIDATEGISEQDLR--IAGLIEE--AGRGIVIVVNKWDLVEEDEAT--------MEEFKKKLRRKLPFLDFAPIVFISA 333 (444)
T ss_pred EEEECCCCchHHHHH--HHHHHHH--cCCCeEEEEEccccCCchhhH--------HHHHHHHHHHHhccccCCeEEEEEe
Confidence 999999988877775 4444444 488999999999998751111 1112223333334444567999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.++.++|+.+.....
T Consensus 334 ~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 334 LTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 999999999998776554
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=158.62 Aligned_cols=165 Identities=17% Similarity=0.199 Sum_probs=109.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCc-cccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~l~~~~~~~~~~ 137 (330)
.+.+||+++|++|||||||+++|.+.++.. ....|.-..+...+..++. .+.+|||||+. .+..+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~--------- 118 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLE--------- 118 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHH---------
Confidence 456899999999999999999999988642 1222222223334445443 56899999982 111110
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
..+.......+.+||++
T Consensus 119 ---------------------------------------------------------------~~~~r~~~~~l~~aDvi 135 (339)
T PRK15494 119 ---------------------------------------------------------------KAMVRCAWSSLHSADLV 135 (339)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHhhhCCEE
Confidence 11111111246789999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~ 296 (330)
++|+|.++ +|.+....|+..+... +.|.++|+||+|+... ..+++.++++..+ ...++++
T Consensus 136 l~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---------------~~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 136 LLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---------------YLNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred EEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---------------cHHHHHHHHHhcCCCcEEEEE
Confidence 99998654 5666653566665543 5677899999998531 1345555555443 2579999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+.+...+-+.
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCC
Confidence 9999999999999998877543
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-18 Score=141.31 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=104.0
Q ss_pred EeecCCCceeEEEEeeccCCCCCCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 68 VVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 68 vvG~~~~GKTsl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
++|++|+|||||++++.+..+...+.++. .......+..++ ..+.+|||||++.+.....
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~----------------- 61 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSE----------------- 61 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCCh-----------------
Confidence 58999999999999999886544333433 233344566665 4688999999854332110
Q ss_pred chhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEEEEEEEcC
Q psy9997 147 NIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVFLVCFSVV 224 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~ilv~d~~ 224 (330)
+ ..++..++ ..+|++++|+|.+
T Consensus 62 ------------------------------------------------------~--~~~~~~~~~~~~~d~vi~v~d~~ 85 (158)
T cd01879 62 ------------------------------------------------------D--EKVARDFLLGEKPDLIVNVVDAT 85 (158)
T ss_pred ------------------------------------------------------h--HHHHHHHhcCCCCcEEEEEeeCC
Confidence 0 01112223 4899999999998
Q ss_pred ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCH
Q psy9997 225 SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 304 (330)
+++... .|...+.. .++|+++|+||+|+... ..+.. +...+++.++ .+++++||.+|.|+
T Consensus 86 ~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~------------~~~~~-~~~~~~~~~~-~~~~~iSa~~~~~~ 145 (158)
T cd01879 86 NLERNL----YLTLQLLE--LGLPVVVALNMIDEAEK------------RGIKI-DLDKLSELLG-VPVVPTSARKGEGI 145 (158)
T ss_pred cchhHH----HHHHHHHH--cCCCEEEEEehhhhccc------------ccchh-hHHHHHHhhC-CCeEEEEccCCCCH
Confidence 765432 23333433 37899999999999654 22322 3456777776 68999999999999
Q ss_pred HHHHHHHHHHh
Q psy9997 305 KNVFDEAILAA 315 (330)
Q Consensus 305 ~~~f~~l~~~i 315 (330)
+++|+.+...+
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=153.69 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=108.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+|+++|.+|+|||||+|++++.++. .....|....+. .+...+ ...+.+|||||.......
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~--------------- 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHS--------------- 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcch---------------
Confidence 6899999999999999999998753 344445443332 233222 245788999998211000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
. .+.+......++.++|++++|+|
T Consensus 65 ---------l-----------------------------------------------~~~~~~~~~~~l~~aDvvl~VvD 88 (270)
T TIGR00436 65 ---------L-----------------------------------------------NRLMMKEARSAIGGVDLILFVVD 88 (270)
T ss_pred ---------H-----------------------------------------------HHHHHHHHHHHHhhCCEEEEEEE
Confidence 0 01111122335678999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.++..+++ . .++..+.. .+.|+++|+||+|+... ....+....++...+..+++++||++|.
T Consensus 89 ~~~~~~~~--~-~i~~~l~~--~~~p~ilV~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 89 SDQWNGDG--E-FVLTKLQN--LKRPVVLTRNKLDNKFK-------------DKLLPLIDKYAILEDFKDIVPISALTGD 150 (270)
T ss_pred CCCCCchH--H-HHHHHHHh--cCCCEEEEEECeeCCCH-------------HHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 99877664 2 34444443 37899999999999632 1122344555555443479999999999
Q ss_pred CHHHHHHHHHHHhcC
Q psy9997 303 GLKNVFDEAILAALE 317 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~ 317 (330)
|++++++.+...+-+
T Consensus 151 gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 151 NTSFLAAFIEVHLPE 165 (270)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999887744
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-18 Score=146.19 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=62.2
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.+||++|++.|......+++++|++++|||+++.. +.... .++..+.. .++|+++|+||+|+....
T Consensus 68 ~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~---------- 133 (194)
T cd01891 68 NIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTR-FVLKKALE--LGLKPIVVINKIDRPDAR---------- 133 (194)
T ss_pred EEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHHH--cCCCEEEEEECCCCCCCC----------
Confidence 34444444666666677888999999999998742 22222 33444333 478999999999996431
Q ss_pred CCCcCHHHHHHHHHHhC------CeeEEEEeeccCCCHH
Q psy9997 273 QKPISFEQGEKLAKELK------AVKYVECSALTQKGLK 305 (330)
Q Consensus 273 ~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~ 305 (330)
.....+++.++...++ .++++++||++|.|+.
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 134 -PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred -HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 1112344444443221 2689999999998763
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-18 Score=161.19 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=114.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|++.. +...++.|.-+.+...+.+++.+ +.+|||+|++.+....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~i----------- 268 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFV----------- 268 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHH-----------
Confidence 35899999999999999999999875 45666666655556677777654 5799999983321100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~i 218 (330)
+.+. .....+++++|+++
T Consensus 269 -------------------------------------------------------------e~~gi~~~~~~~~~aD~il 287 (442)
T TIGR00450 269 -------------------------------------------------------------ERLGIEKSFKAIKQADLVI 287 (442)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhhCCEEE
Confidence 1111 11234678899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.++++. |+..+.. .+.|+++|+||+|+... +...+++.++ .+++++||
T Consensus 288 ~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~------------------~~~~~~~~~~-~~~~~vSa 343 (442)
T TIGR00450 288 YVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN------------------SLEFFVSSKV-LNSSNLSA 343 (442)
T ss_pred EEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc------------------chhhhhhhcC-CceEEEEE
Confidence 99999999887764 5555543 47899999999999531 1123455555 57899999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++ .|++++|+.+...+.+.
T Consensus 344 k~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 344 KQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred ec-CCHHHHHHHHHHHHHHH
Confidence 98 69999999988877653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-18 Score=139.03 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=100.9
Q ss_pred EEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 67 VVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 67 ~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
+++|++|+|||||++++.+.. +.+.+.++..+........++ ..+.+|||||.+.+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~----------------- 61 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEG----------------- 61 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhH-----------------
Confidence 479999999999999999875 344444444333344444443 56789999998332210
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
.. ..+.......++.+|++++|+|.+
T Consensus 62 -------~~-----------------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~ 87 (157)
T cd01894 62 -------IS-----------------------------------------------KEIREQAELAIEEADVILFVVDGR 87 (157)
T ss_pred -------HH-----------------------------------------------HHHHHHHHHHHHhCCEEEEEEecc
Confidence 00 111122233567899999999998
Q ss_pred ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCH
Q psy9997 225 SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 304 (330)
++.+..... +...+.. .+.|+++|+||+|+.... .. .......+...++++||++|.|+
T Consensus 88 ~~~~~~~~~--~~~~~~~--~~~piiiv~nK~D~~~~~------------~~-----~~~~~~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 88 EGLTPADEE--IAKYLRK--SKKPVILVVNKVDNIKEE------------DE-----AAEFYSLGFGEPIPISAEHGRGI 146 (157)
T ss_pred ccCCccHHH--HHHHHHh--cCCCEEEEEECcccCChH------------HH-----HHHHHhcCCCCeEEEecccCCCH
Confidence 765554432 2333333 269999999999997541 11 12223344337899999999999
Q ss_pred HHHHHHHHHHh
Q psy9997 305 KNVFDEAILAA 315 (330)
Q Consensus 305 ~~~f~~l~~~i 315 (330)
+++|+++++.+
T Consensus 147 ~~l~~~l~~~~ 157 (157)
T cd01894 147 GDLLDAILELL 157 (157)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-18 Score=155.29 Aligned_cols=161 Identities=20% Similarity=0.170 Sum_probs=110.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
..|+++|.+|+|||||++++...+. ...|+-|.-....-.+.+++ ...+.+||+||.....
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a----------------- 219 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGA----------------- 219 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCC-----------------
Confidence 4699999999999999999998652 23333232111112233332 3567889999972100
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc---cccCCCEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL---SYPQTDVFLV 219 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~---~~~~~d~~il 219 (330)
.....+... .++.++++++
T Consensus 220 ----------------------------------------------------------~~~~gLg~~flrhierad~ll~ 241 (329)
T TIGR02729 220 ----------------------------------------------------------SEGAGLGHRFLKHIERTRVLLH 241 (329)
T ss_pred ----------------------------------------------------------cccccHHHHHHHHHHhhCEEEE
Confidence 000011111 2457999999
Q ss_pred EEEcCCh---hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 220 CFSVVSP---SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 220 v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
|+|+++. ++++++. .|..++..+. .+.|+++|+||+|+..+ . ...+..+.+++.++ .++
T Consensus 242 VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------------~-~~~~~~~~l~~~~~-~~v 306 (329)
T TIGR02729 242 LIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDE------------E-ELAELLKELKKALG-KPV 306 (329)
T ss_pred EEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCCh------------H-HHHHHHHHHHHHcC-CcE
Confidence 9999987 6888887 7888877654 47899999999999653 1 12344556666665 689
Q ss_pred EEEeeccCCCHHHHHHHHHHHh
Q psy9997 294 VECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+++||+++.|++++++.+.+.+
T Consensus 307 i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 307 FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEccCCcCHHHHHHHHHHHh
Confidence 9999999999999999988754
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-18 Score=140.26 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=67.4
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
++++|++++|+|+++.+++.. .|+..+ ..+.|+++++||+|+... ..+.+.+++++.+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~ 120 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGF 120 (158)
T ss_pred HhcCCEEEEEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCC
Confidence 678999999999999887633 344333 246799999999998532 34567777777763
Q ss_pred -eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 291 -VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 -~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+++++||++|.|++++|+.+.+.+-+.
T Consensus 121 ~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 121 EEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred CCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 4899999999999999999987776443
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-18 Score=142.73 Aligned_cols=91 Identities=21% Similarity=0.220 Sum_probs=66.6
Q ss_pred cccCCCEEEEEEEcCCh------hhHhhhhhcchhhhhhcC--------CCCcEEEEEeccCCCCCchhhHHhhhCCCCC
Q psy9997 210 SYPQTDVFLVCFSVVSP------SSFENVKEKWVPEITHHC--------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKP 275 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~ 275 (330)
.++.+|++++|+|.+++ .++++.. .|..++.... .+.|+++|+||+|+... +.
T Consensus 71 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~ 137 (176)
T cd01881 71 HIRRADAILHVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------------EE 137 (176)
T ss_pred HHhccCEEEEEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------------hH
Confidence 35679999999999988 5777776 6766665443 37899999999999754 22
Q ss_pred cCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 276 ISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 276 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.............+ ..++++||+++.|++++++.++..
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 138 LEEELVRELALEEG-AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHHHHHHHhcCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence 22221223333333 679999999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-18 Score=144.24 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+||++|+..+...+..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+..+..
T Consensus 63 ~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~i~iv~nK~D~~~~~~------- 131 (189)
T cd00881 63 RVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTRE--HLRIARE--GGLPIIVAINKIDRVGEED------- 131 (189)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHH--CCCCeEEEEECCCCcchhc-------
Confidence 4566777777777777777788999999999998776554433 4444443 5899999999999975311
Q ss_pred CCCCCcCHHHHHHHHHHh-------------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKEL-------------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~-------------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.....+++++..+.. ...+++++||++|.|++++|+.+...+
T Consensus 132 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 132 ---LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ---HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 111223333333332 236899999999999999999999886
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-18 Score=163.50 Aligned_cols=172 Identities=24% Similarity=0.397 Sum_probs=124.9
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+..+||+++|+.|||||||+-.+..+.|.+.-++.. +.+...-++....+...|.|++..
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~---------------- 66 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSD---------------- 66 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccc----------------
Confidence 345678999999999999999999999999877643332 222222223333344666676432
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.-+.....-+++||++
T Consensus 67 ---------------------------------------------------------------~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 67 ---------------------------------------------------------------SDDRLCLRKEIRKADVI 83 (625)
T ss_pred ---------------------------------------------------------------cchhHHHHHHHhhcCEE
Confidence 11111112346789999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHHHHhCCe-e
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLAKELKAV-K 292 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~ 292 (330)
+++|+++++++.+.+...|+..+++.. .++|+||||||+|.....+ .+.+. ...+-+++.++ .
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~------------~s~e~~~~pim~~f~EiEt 151 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN------------NSDEVNTLPIMIAFAEIET 151 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc------------cchhHHHHHHHHHhHHHHH
Confidence 999999999999999999999999988 7999999999999987632 12222 33333333322 4
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.+|+||++-.++.++|....++++++-++
T Consensus 152 ciecSA~~~~n~~e~fYyaqKaVihPt~P 180 (625)
T KOG1707|consen 152 CIECSALTLANVSELFYYAQKAVIHPTSP 180 (625)
T ss_pred HHhhhhhhhhhhHhhhhhhhheeeccCcc
Confidence 79999999999999999999999988665
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-18 Score=142.31 Aligned_cols=117 Identities=34% Similarity=0.554 Sum_probs=94.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++||+|||||||+.||..+.|+.+|.||+++.+.+.+.+++..+.+++||+++.+.+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~------------------ 62 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY------------------ 62 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhh------------------
Confidence 47999999999999999999999999999999999889888999999999999999872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccc-cCCc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK-LGGW 161 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~-~~~~ 161 (330)
..+++.||++++++++|||.+. ..++ .. ...|
T Consensus 63 ------------------------------------------~~~~~~~~~~a~~~ilvfdit~--~~Sf---~~~~~~w 95 (178)
T cd04131 63 ------------------------------------------DNVRPLCYPDSDAVLICFDISR--PETL---DSVLKKW 95 (178)
T ss_pred ------------------------------------------hhcchhhcCCCCEEEEEEECCC--hhhH---HHHHHHH
Confidence 3456779999999999998432 2222 23 3567
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
...+... .+..++.++|+|.|+.
T Consensus 96 ~~~i~~~-~~~~~iilVgnK~DL~ 118 (178)
T cd04131 96 RGEIQEF-CPNTKVLLVGCKTDLR 118 (178)
T ss_pred HHHHHHH-CCCCCEEEEEEChhhh
Confidence 6665543 4678899999999984
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-18 Score=162.28 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=108.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC-CCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|+++|.+|||||||+++|++.++. ....|.+ -+.....+..++. .+.+|||+|++.....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~------------- 102 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKG------------- 102 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchh-------------
Confidence 368999999999999999999987752 2222222 2222334445544 4678999997310000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
. .+.+......+++.||++++|
T Consensus 103 -----------~-----------------------------------------------~~~~~~~~~~~~~~aD~il~V 124 (472)
T PRK03003 103 -----------L-----------------------------------------------QASVAEQAEVAMRTADAVLFV 124 (472)
T ss_pred -----------H-----------------------------------------------HHHHHHHHHHHHHhCCEEEEE
Confidence 0 023444455678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||+++..++... .|...+.. .+.|+++|+||+|+... ..+..+.+...++ ..+++||++
T Consensus 125 vD~~~~~s~~~~--~i~~~l~~--~~~piilV~NK~Dl~~~---------------~~~~~~~~~~g~~--~~~~iSA~~ 183 (472)
T PRK03003 125 VDATVGATATDE--AVARVLRR--SGKPVILAANKVDDERG---------------EADAAALWSLGLG--EPHPVSALH 183 (472)
T ss_pred EECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCcc---------------chhhHHHHhcCCC--CeEEEEcCC
Confidence 999988776543 35555543 47999999999998542 1122222332333 357999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.++..+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999998865
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-18 Score=139.29 Aligned_cols=167 Identities=20% Similarity=0.170 Sum_probs=103.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+...+|+++|.+|+|||||++++.+.++........................+.+|||+|.........
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----------- 69 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG----------- 69 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH-----------
Confidence 356899999999999999999998876432211111111111112233346678899988732111000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+.......+..+|++++|
T Consensus 70 ------------------------------------------------------------~~~~~~~~~~~~~~d~i~~v 89 (168)
T cd04163 70 ------------------------------------------------------------ERMVKAAWSALKDVDLVLFV 89 (168)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHhCCEEEEE
Confidence 11111223346788999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+|.+++.+. ....+...+... +.|+++|+||+|+... .....+....+....+..+++++||++
T Consensus 90 ~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 90 VDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKD------------KEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred EECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhcccc------------HHHHHHHHHHHHhccCCCceEEEEecc
Confidence 999987222 221233334332 6899999999999743 222233444555555446899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
+.|++++|+.+.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999998765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=154.42 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=107.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.++|+++|.+|+|||||+|+|++..+. ..+..+.-+.....+.+.+ ...+.+|||+|..+ .+...
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~--~l~~~----------- 254 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIR--DLPHE----------- 254 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccc--cCCHH-----------
Confidence 389999999999999999999997643 2333233333344555533 23678899999711 00000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+ .+.|.... ..+.+||++++|+
T Consensus 255 ----------------------------------------------------l-----ie~f~~tl-e~~~~ADlil~Vv 276 (351)
T TIGR03156 255 ----------------------------------------------------L-----VAAFRATL-EEVREADLLLHVV 276 (351)
T ss_pred ----------------------------------------------------H-----HHHHHHHH-HHHHhCCEEEEEE
Confidence 0 02333322 2477899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++.+++++. .|...+.... .+.|+++|+||+|+... ..+ ..+.. +..+++++||++
T Consensus 277 D~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~------------~~v-----~~~~~--~~~~~i~iSAkt 336 (351)
T TIGR03156 277 DASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDE------------PRI-----ERLEE--GYPEAVFVSAKT 336 (351)
T ss_pred ECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCCh------------HhH-----HHHHh--CCCCEEEEEccC
Confidence 999999888876 5666555543 47899999999999642 111 11111 124689999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
|.|++++++.+...
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=128.90 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=117.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++.+.++|-.++|||||++....+.|.+.-.||.|.+..+ +....+.+.+||.+||
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq------------------- 75 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ------------------- 75 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCC-------------------
Confidence 357899999999999999999999999988888888766543 4555667777887777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
.+|++.+..|++.+++++.|
T Consensus 76 ------------------------------------------------------------~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 76 ------------------------------------------------------------PRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred ------------------------------------------------------------ccHHHHHHHHhhcCcEEEEE
Confidence 55666667777888888888
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-------Cee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-------AVK 292 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~ 292 (330)
.|..+++...-..+.+++.+.+.. ...|+++.|||.|+..+ .+.+ ++....| .+.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--------------L~~~---~li~rmgL~sitdREvc 158 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--------------LSKI---ALIERMGLSSITDREVC 158 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--------------ccHH---HHHHHhCccccccceEE
Confidence 888888877776644444444433 58999999999999765 1111 2333333 256
Q ss_pred EEEEeeccCCCHHHHHHHHHHHh
Q psy9997 293 YVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+.+||+...|++.+.+++++.-
T Consensus 159 C~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 159 CFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEcCCccHHHHHHHHHHHh
Confidence 89999999999999999987653
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=159.73 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=110.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+... ...+..|..+.+...+.+++. .+.+|||+|.+.+....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~i----------- 280 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEV----------- 280 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHH-----------
Confidence 348999999999999999999998763 455555555555556666654 56889999983211100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccc-ccccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDY-DRLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~-~~~~~~~~~~~d~~i 218 (330)
+.. -......++++|+++
T Consensus 281 -------------------------------------------------------------e~~gi~~~~~~~~~aD~il 299 (449)
T PRK05291 281 -------------------------------------------------------------EKIGIERSREAIEEADLVL 299 (449)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhCCEEE
Confidence 110 001123578899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.++++.. .|.. ..+.|+++|+||+|+... .... ...+ .+++++||
T Consensus 300 ~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~------------~~~~--------~~~~-~~~i~iSA 352 (449)
T PRK05291 300 LVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGE------------IDLE--------EENG-KPVIRISA 352 (449)
T ss_pred EEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhcccc------------chhh--------hccC-CceEEEEe
Confidence 999999998888665 4433 457899999999999653 1111 2223 57999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++++.+...+..
T Consensus 353 ktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 353 KTGEGIDELREAIKELAFG 371 (449)
T ss_pred eCCCCHHHHHHHHHHHHhh
Confidence 9999999999999888754
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-17 Score=159.16 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=73.5
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|......+++.+|++++|+|+++..+++... .|...+. .++|+++|+||+|+.... ..+.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~---~~ipiIiViNKiDl~~~~--------------~~~~ 142 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE---NDLEIIPVINKIDLPSAD--------------PERV 142 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH---cCCCEEEEEECcCCCccC--------------HHHH
Confidence 445455556788899999999999877777765 5544332 378999999999996431 1222
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
..++++.++. ..++++||++|.|++++|+.++..+-.+..
T Consensus 143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~ 184 (595)
T TIGR01393 143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPKG 184 (595)
T ss_pred HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCCC
Confidence 3445555552 248999999999999999999988765543
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-17 Score=135.27 Aligned_cols=165 Identities=23% Similarity=0.312 Sum_probs=103.6
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|+|||||++++.+..+. .....+........+..++. .+.+|||+|.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~----------- 68 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEE----------- 68 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhc-----------
Confidence 578999999999999999999987632 22222222222334444444 367899999732110000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccc-cCccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRL-RPLSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~-~~~~~~~~d~~il 219 (330)
..+.+... ....+..+|++++
T Consensus 69 ----------------------------------------------------------~~e~~~~~~~~~~~~~~d~vi~ 90 (174)
T cd01895 69 ----------------------------------------------------------GIEKYSVLRTLKAIERADVVLL 90 (174)
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHHhhcCeEEE
Confidence 00111111 1123568999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-HHHHh---CCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-LAKEL---KAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~~~~e 295 (330)
|+|++++.+..... ++..+.. .+.|+++|+||+|+... +....++..+ +.+.. +..++++
T Consensus 91 v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 91 VIDATEGITEQDLR--IAGLILE--EGKALVIVVNKWDLVEK------------DSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred EEeCCCCcchhHHH--HHHHHHh--cCCCEEEEEeccccCCc------------cHHHHHHHHHHHHhhcccccCCceEE
Confidence 99999988876653 3333332 36899999999999764 1112222222 22222 2357999
Q ss_pred EeeccCCCHHHHHHHHHHH
Q psy9997 296 CSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~ 314 (330)
+||+++.|++++++.+.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999988764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-18 Score=130.59 Aligned_cols=135 Identities=20% Similarity=0.275 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+|++++|++.|||||++.||+.+.|.+.+.+|++-.| .+++--+.+.+++++||+++++++
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEry------------------ 83 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERY------------------ 83 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhh------------------
Confidence 5999999999999999999999999999999999777 667777889999999999995543
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..|||+|.++|++||.+. .++...++.|.
T Consensus 84 ------------------------------------------rtiTTayyRgamgfiLmyDitN-----eeSf~svqdw~ 116 (193)
T KOG0093|consen 84 ------------------------------------------RTITTAYYRGAMGFILMYDITN-----EESFNSVQDWI 116 (193)
T ss_pred ------------------------------------------hHHHHHHhhccceEEEEEecCC-----HHHHHHHHHHH
Confidence 5567789999999999998443 33455677888
Q ss_pred eeeeccCCCcccccccceeeccCCCccccc----ccccccccccc
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDR----SLFDTAGQEDY 203 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~D~~g~e~~ 203 (330)
.++.+..-.+.++.++|+|+|+...+.++. .+.|-.|-|-|
T Consensus 117 tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefF 161 (193)
T KOG0093|consen 117 TQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFF 161 (193)
T ss_pred HHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHh
Confidence 888887778899999999999987776653 34444444333
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-17 Score=133.25 Aligned_cols=153 Identities=23% Similarity=0.237 Sum_probs=102.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|+|||||++++.+..+ ...+.++....+...+..+ ...+.+|||+|...+....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~------------- 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEI------------- 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchH-------------
Confidence 5899999999999999999998764 2223333222222334443 3567889999973211000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
..+.. ......+..+|++++|+
T Consensus 67 ---------------------------------------------------------~~~~~-~~~~~~~~~~~~~v~v~ 88 (157)
T cd04164 67 ---------------------------------------------------------EKIGI-ERAREAIEEADLVLFVI 88 (157)
T ss_pred ---------------------------------------------------------HHHHH-HHHHHHHhhCCEEEEEE
Confidence 00111 11223456899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++++.+..+.. .+.. ....|+++|+||+|+... ... ..... ..+++++||+++
T Consensus 89 d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~------------~~~-------~~~~~-~~~~~~~Sa~~~ 142 (157)
T cd04164 89 DASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPD------------SEL-------LSLLA-GKPIIAISAKTG 142 (157)
T ss_pred ECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCc------------ccc-------ccccC-CCceEEEECCCC
Confidence 999988887765 3322 457999999999999764 111 22233 368999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++++++...+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999987643
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-17 Score=141.12 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=67.7
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.+||++|+..+..........+|++++|+|+++........ .+. +... .+.|+++|+||+|+.....
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~--~~~~-~~~~~iiv~NK~Dl~~~~~--------- 137 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV--IGEI-LCKKLIVVLNKIDLIPEEE--------- 137 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH--HHHH-cCCCEEEEEECcccCCHHH---------
Confidence 34444444443222222345689999999998754443332 221 1111 2679999999999974311
Q ss_pred CCCcCHHHHHHHHH-H-----hCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 273 QKPISFEQGEKLAK-E-----LKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 273 ~~~v~~~~~~~~~~-~-----~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.....++..+... . ....+++++||++|.|++++++.+...+.-+
T Consensus 138 -~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 138 -RERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred -HHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1112223322211 1 1236899999999999999999999887654
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-17 Score=139.45 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=107.1
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
....++|+++|++|+|||||++++.+.++...+.++.+......... ....+.+|||+|.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~-------------- 84 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAK-------------- 84 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcC--------------
Confidence 34568999999999999999999999877666666665433222211 13678899999962100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC---CCE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---TDV 216 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---~d~ 216 (330)
++...++.+......+++. .++
T Consensus 85 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (196)
T PRK00454 85 -------------------------------------------------------VSKEEKEKWQKLIEEYLRTRENLKG 109 (196)
T ss_pred -------------------------------------------------------CCchHHHHHHHHHHHHHHhCccceE
Confidence 0000012222222333333 467
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+++++|.+++.+..... +...+.. .+.|+++++||+|+..... .+...+++..+..... .+++++
T Consensus 110 ~~~v~d~~~~~~~~~~~--i~~~l~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~i~~~l~~~~-~~~~~~ 174 (196)
T PRK00454 110 VVLLIDSRHPLKELDLQ--MIEWLKE--YGIPVLIVLTKADKLKKGE----------RKKQLKKVRKALKFGD-DEVILF 174 (196)
T ss_pred EEEEEecCCCCCHHHHH--HHHHHHH--cCCcEEEEEECcccCCHHH----------HHHHHHHHHHHHHhcC-CceEEE
Confidence 88888988765544321 2222222 3789999999999975311 1222233444444433 689999
Q ss_pred eeccCCCHHHHHHHHHHHhc
Q psy9997 297 SALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~ 316 (330)
||+++.|++++|+.+...+-
T Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EcCCCCCHHHHHHHHHHHhc
Confidence 99999999999998876654
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=156.69 Aligned_cols=151 Identities=20% Similarity=0.294 Sum_probs=101.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+|+++|+.++|||||+++|.+.++...+.+.+...+. ..+..++. ..+.+|||||+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGh------------------- 145 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGH------------------- 145 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCC-------------------
Confidence 5579999999999999999999998876655444322222 23333221 14556666666
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.|..++...+..+|++++|
T Consensus 146 ------------------------------------------------------------e~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 146 ------------------------------------------------------------EAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred ------------------------------------------------------------cchhhHHHhhhccCCEEEEE
Confidence 66666666677889999999
Q ss_pred EEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-------HhC-
Q psy9997 221 FSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-------ELK- 289 (330)
Q Consensus 221 ~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~- 289 (330)
+|+++ +++.+.+. ... ..++|+++++||+|+.... .+++.+... .++
T Consensus 166 Vda~dgv~~qT~e~i~-----~~~--~~~vPiIVviNKiDl~~~~---------------~e~v~~~L~~~g~~~~~~~~ 223 (587)
T TIGR00487 166 VAADDGVMPQTIEAIS-----HAK--AANVPIIVAINKIDKPEAN---------------PDRVKQELSEYGLVPEDWGG 223 (587)
T ss_pred EECCCCCCHhHHHHHH-----HHH--HcCCCEEEEEECcccccCC---------------HHHHHHHHHHhhhhHHhcCC
Confidence 99886 44444332 111 2478999999999996431 122222222 222
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..+++++||++|.|++++|+.+...
T Consensus 224 ~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 224 DTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred CceEEEEECCCCCChHHHHHhhhhh
Confidence 2579999999999999999998653
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-17 Score=138.71 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=101.2
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
......+|+++|++|+|||||++++.+..+...+.++.+..... ....++ .+.+|||+|...-....
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~--------- 81 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSK--------- 81 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCCh---------
Confidence 34567899999999999999999999987655555555543322 222332 58899999962100000
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc---CC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP---QT 214 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~---~~ 214 (330)
...+.+......+++ .+
T Consensus 82 ------------------------------------------------------------~~~~~~~~~~~~~l~~~~~~ 101 (179)
T TIGR03598 82 ------------------------------------------------------------EEKEKWQKLIEEYLEKRENL 101 (179)
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHHHHhChhh
Confidence 000112222222333 45
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeE
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKY 293 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 293 (330)
+++++|+|.+++-+..+.. ++..+.. .+.|+++|+||+|+..+.. .....+++++.....+ ...+
T Consensus 102 ~~ii~vvd~~~~~~~~~~~--~~~~~~~--~~~pviiv~nK~D~~~~~~----------~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 102 KGVVLLMDIRHPLKELDLE--MLEWLRE--RGIPVLIVLTKADKLKKSE----------LNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred cEEEEEecCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCCHHH----------HHHHHHHHHHHHhhccCCCce
Confidence 7999999998876655553 3344433 3789999999999975321 1223444555555543 2479
Q ss_pred EEEeeccCCCHH
Q psy9997 294 VECSALTQKGLK 305 (330)
Q Consensus 294 ~e~Sa~~~~~v~ 305 (330)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-17 Score=134.84 Aligned_cols=155 Identities=22% Similarity=0.261 Sum_probs=99.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++|+++|.+|||||||+|++++.+.. .+++.+.-+...-.+...+ ..+.++|+||.-...+...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~------------- 65 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSE------------- 65 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSH-------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCc-------------
Confidence 58999999999999999999998743 3343333332233555555 6778899999822111000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++.-........+.|+++.|.|
T Consensus 66 ----------------------------------------------------------ee~v~~~~l~~~~~D~ii~VvD 87 (156)
T PF02421_consen 66 ----------------------------------------------------------EERVARDYLLSEKPDLIIVVVD 87 (156)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTSSSEEEEEEE
T ss_pred ----------------------------------------------------------HHHHHHHHHhhcCCCEEEEECC
Confidence 1100111111357899999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.++.+.-.+ +..++.+. +.|+++|.||+|.... +.+.. +...+.+.++ ++++.+||+++.
T Consensus 88 a~~l~r~l~----l~~ql~e~--g~P~vvvlN~~D~a~~------------~g~~i-d~~~Ls~~Lg-~pvi~~sa~~~~ 147 (156)
T PF02421_consen 88 ATNLERNLY----LTLQLLEL--GIPVVVVLNKMDEAER------------KGIEI-DAEKLSERLG-VPVIPVSARTGE 147 (156)
T ss_dssp GGGHHHHHH----HHHHHHHT--TSSEEEEEETHHHHHH------------TTEEE--HHHHHHHHT-S-EEEEBTTTTB
T ss_pred CCCHHHHHH----HHHHHHHc--CCCEEEEEeCHHHHHH------------cCCEE-CHHHHHHHhC-CCEEEEEeCCCc
Confidence 998543322 33444443 7999999999999764 33332 3667888888 799999999999
Q ss_pred CHHHHHHHH
Q psy9997 303 GLKNVFDEA 311 (330)
Q Consensus 303 ~v~~~f~~l 311 (330)
|++++++++
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=121.06 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=115.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+++|+++|-.++||||++.++..+. +....||+|.+... +.-+++.+++||.+|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvet---VtykN~kfNvwdvGGq------------------- 71 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ------------------- 71 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEE---EEeeeeEEeeeeccCc-------------------
Confidence 457999999999999999999998876 44456676655432 1223556667777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++.+.+|+.||....++|+|
T Consensus 72 ------------------------------------------------------------d~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 72 ------------------------------------------------------------DKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ------------------------------------------------------------hhhhHHHHhhccCCceEEEE
Confidence 55566666777777888888
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYVE 295 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e 295 (330)
.|..++...+..++.+++.+.... .+.|+++.+||.|+..+ .+.+|+..+.+-- ..+-+..
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--------------~~pqei~d~leLe~~r~~~W~vqp 157 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--------------MKPQEIQDKLELERIRDRNWYVQP 157 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--------------cCHHHHHHHhccccccCCccEeec
Confidence 888888888887766666665443 58999999999999865 4455555444321 1245788
Q ss_pred EeeccCCCHHHHHHHHHHHhc
Q psy9997 296 CSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+||.+|.|+.+-|.++...+-
T Consensus 158 ~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 158 SCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccccchhHHHHHHHHHhhcc
Confidence 999999999999999887653
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=148.46 Aligned_cols=91 Identities=24% Similarity=0.290 Sum_probs=71.8
Q ss_pred ccCCCEEEEEEEcCCh---hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSP---SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.++++++|+|+++. +++++.. .|..++..+. .+.|+++|+||+|+... .+.+..+
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l 296 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEF 296 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHH
Confidence 4568999999999865 6777776 7888887754 37899999999998421 2345567
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++.++ .+++++||+++.|++++++.+...+.+.+
T Consensus 297 ~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 297 KEKLG-PKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred HHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 77766 68999999999999999999988775543
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-16 Score=149.94 Aligned_cols=164 Identities=19% Similarity=0.133 Sum_probs=105.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC-CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+|+++|.+|+|||||+|+|++..+.. +...+.-+.....+.+.+. ..+.+|||+|..+. +.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~--lp-------------- 260 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRH--LP-------------- 260 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCccccc--CC--------------
Confidence 589999999999999999999876432 2222222223334444432 24578999997210 00
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
..+| +.|... ...++.||++++|+|
T Consensus 261 -------------------------------------------------~~lv-----e~f~~t-l~~~~~ADlIL~VvD 285 (426)
T PRK11058 261 -------------------------------------------------HDLV-----AAFKAT-LQETRQATLLLHVVD 285 (426)
T ss_pred -------------------------------------------------HHHH-----HHHHHH-HHHhhcCCEEEEEEe
Confidence 0000 223221 224678999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++.+++++. .|...+.... .+.|+++|+||+|+... .. .... . ...+...++++||++|
T Consensus 286 aS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~~~------------~~---~~~~-~-~~~~~~~~v~ISAktG 347 (426)
T PRK11058 286 AADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDMLDD------------FE---PRID-R-DEENKPIRVWLSAQTG 347 (426)
T ss_pred CCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCCCc------------hh---HHHH-H-HhcCCCceEEEeCCCC
Confidence 99999888875 4444444332 47999999999999642 00 0000 1 1223222588999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++++.+...+..
T Consensus 348 ~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 348 AGIPLLFQALTERLSG 363 (426)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999988753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=152.42 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=104.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+|+++|.+|||||||+++|.+.+. ...+..+..+.....+..++ ..+.+|||+|.+....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~--------------- 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDD--------------- 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcch---------------
Confidence 4899999999999999999998774 34444433344444555655 6789999999832000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.. .+.+......++..+|++++|+
T Consensus 65 ---------~~-----------------------------------------------~~~~~~~~~~~~~~ad~il~vv 88 (435)
T PRK00093 65 ---------GF-----------------------------------------------EKQIREQAELAIEEADVILFVV 88 (435)
T ss_pred ---------hH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 00 0222333444677899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|.+++.+..+.. ....++. .+.|+++|+||+|+... . +....+ ..++...++++||++|
T Consensus 89 d~~~~~~~~~~~--~~~~l~~--~~~piilv~NK~D~~~~-------------~---~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 89 DGRAGLTPADEE--IAKILRK--SNKPVILVVNKVDGPDE-------------E---ADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred ECCCCCCHHHHH--HHHHHHH--cCCcEEEEEECccCccc-------------h---hhHHHH-HhcCCCCCEEEEeeCC
Confidence 998764443321 2222222 27899999999997431 1 122222 2344334899999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++|+.++...
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998743
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=144.37 Aligned_cols=169 Identities=21% Similarity=0.203 Sum_probs=107.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
++.-.|+++|++|+|||||+|+++++++.. ....|...... .+... ....+.+|||||.......
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~~~-~~~qi~~iDTPG~~~~~~~----------- 69 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GIVTE-DDAQIIFVDTPGIHKPKRA----------- 69 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EEEEc-CCceEEEEECCCCCCchhH-----------
Confidence 345679999999999999999999887532 22223222221 11111 2367888999997211000
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
. .+.+.......+.++|+++
T Consensus 70 -------------l-----------------------------------------------~~~~~~~~~~~~~~~D~il 89 (292)
T PRK00089 70 -------------L-----------------------------------------------NRAMNKAAWSSLKDVDLVL 89 (292)
T ss_pred -------------H-----------------------------------------------HHHHHHHHHHHHhcCCEEE
Confidence 0 0111122233467899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|+|+++..+ .....++..+.. .+.|+++|+||+|+... .....+....+.+..+...++++||
T Consensus 90 ~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~~------------~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 90 FVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVKD------------KEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred EEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCCC------------HHHHHHHHHHHHhhCCCCeEEEecC
Confidence 9999988322 222123333332 36899999999999743 2223345566666555568999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++.|++++++.+...+-+.
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCC
Confidence 99999999999998887543
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=135.62 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=82.4
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|+++|++|+|||||+++|....+...+.++. ..+.. .....+....+.+||+||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~---------------------- 58 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGH---------------------- 58 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCC----------------------
Confidence 58999999999999999999998766654442 22222 1111234455666777776
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCC-CEEEEEEE
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT-DVFLVCFS 222 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~-d~~ilv~d 222 (330)
++++.....+++.+ +++|+|+|
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 59 ---------------------------------------------------------PKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHhccCCEEEEEEE
Confidence 55555555567777 99999999
Q ss_pred cCCh-hhHhhhhhcchhhhhh----cCCCCcEEEEEeccCCCCC
Q psy9997 223 VVSP-SSFENVKEKWVPEITH----HCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 223 ~~~~-~s~~~~~~~~~~~i~~----~~~~~piilV~nK~Dl~~~ 261 (330)
.++. +++..+. .|+..+.. ....+|+++|+||+|+..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVA-EFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHH-HHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9987 7888877 55544432 2258999999999999764
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-16 Score=149.87 Aligned_cols=160 Identities=20% Similarity=0.221 Sum_probs=107.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+|+++|++|||||||+++|.+.+. ...+..+..+.....+..++. .+.+|||+|......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~---------------- 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDD---------------- 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcch----------------
Confidence 589999999999999999998763 334433333444445555554 488999999721000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
. -++.+......+++.+|++++|+|
T Consensus 63 --------~-----------------------------------------------~~~~~~~~~~~~~~~ad~vl~vvD 87 (429)
T TIGR03594 63 --------G-----------------------------------------------LDKQIREQAEIAIEEADVILFVVD 87 (429)
T ss_pred --------h-----------------------------------------------HHHHHHHHHHHHHhhCCEEEEEEe
Confidence 0 003334445556788999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.++..+..+.. +...+++ .+.|+++|+||+|+... .. . ...+ ..++...++++||++|.
T Consensus 88 ~~~~~~~~d~~--i~~~l~~--~~~piilVvNK~D~~~~------------~~-~---~~~~-~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 88 GREGLTPEDEE--IAKWLRK--SGKPVILVANKIDGKKE------------DA-V---AAEF-YSLGFGEPIPISAEHGR 146 (429)
T ss_pred CCCCCCHHHHH--HHHHHHH--hCCCEEEEEECccCCcc------------cc-c---HHHH-HhcCCCCeEEEeCCcCC
Confidence 98765544422 3333433 37899999999998753 11 1 1122 34454479999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q psy9997 303 GLKNVFDEAILAALEP 318 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~ 318 (330)
|++++++.+...+-+.
T Consensus 147 gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 147 GIGDLLDAILELLPEE 162 (429)
T ss_pred ChHHHHHHHHHhcCcc
Confidence 9999999999887543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-16 Score=153.57 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=106.4
Q ss_pred EeEEEeecCCCceeEEEEeecc---CCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTT---NKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~---~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.|+++|+.++|||||+++|++ ..+.+++.+++...+. ..+..++ ..+.+||+||+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGh------------------ 60 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGH------------------ 60 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCH------------------
Confidence 3588999999999999999986 3344444444433322 1233333 55666666666
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.|.......+.++|++++
T Consensus 61 -------------------------------------------------------------e~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 61 -------------------------------------------------------------EKFISNAIAGGGGIDAALL 79 (581)
T ss_pred -------------------------------------------------------------HHHHHHHHhhhccCCEEEE
Confidence 6665555667788999999
Q ss_pred EEEcCC---hhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC---Cee
Q psy9997 220 CFSVVS---PSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK---AVK 292 (330)
Q Consensus 220 v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~ 292 (330)
|+|+++ +++++.+. ++ .. .++| +++|+||+|+..... .....+++.++.+..+ ..+
T Consensus 80 VVDa~~G~~~qT~ehl~--il---~~--lgi~~iIVVlNK~Dlv~~~~----------~~~~~~ei~~~l~~~~~~~~~~ 142 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLA--VL---DL--LGIPHTIVVITKADRVNEEE----------IKRTEMFMKQILNSYIFLKNAK 142 (581)
T ss_pred EEECCCCCcHHHHHHHH--HH---HH--cCCCeEEEEEECCCCCCHHH----------HHHHHHHHHHHHHHhCCCCCCc
Confidence 999987 56666554 22 21 2567 999999999975310 1122345666666543 368
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++++||++|.|+++++..+...+-.
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHh
Confidence 9999999999999999988765543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-16 Score=154.12 Aligned_cols=153 Identities=18% Similarity=0.285 Sum_probs=103.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceee---cceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD---NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
+..+|+++|+.++|||||++++....+.....+++.. .+......++....+.+|||||+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh----------------- 305 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH----------------- 305 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH-----------------
Confidence 4578999999999999999999988765543332211 11122223334455666666665
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.|..++..++..+|+++
T Consensus 306 --------------------------------------------------------------e~F~~mr~rg~~~aDiaI 323 (742)
T CHL00189 306 --------------------------------------------------------------EAFSSMRSRGANVTDIAI 323 (742)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHCCEEE
Confidence 667677777788899999
Q ss_pred EEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-------HHHHh
Q psy9997 219 VCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-------LAKEL 288 (330)
Q Consensus 219 lv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~ 288 (330)
+|+|+++ +++++.+. .+. ..++|+|+|+||+|+.... .+++.+ +...+
T Consensus 324 LVVDA~dGv~~QT~E~I~-----~~k--~~~iPiIVViNKiDl~~~~---------------~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 324 LIIAADDGVKPQTIEAIN-----YIQ--AANVPIIVAINKIDKANAN---------------TERIKQQLAKYNLIPEKW 381 (742)
T ss_pred EEEECcCCCChhhHHHHH-----HHH--hcCceEEEEEECCCccccC---------------HHHHHHHHHHhccchHhh
Confidence 9999887 45554443 121 2478999999999996531 111111 12223
Q ss_pred C-CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 K-AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 ~-~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+ .++++++||++|.|++++|+.++...
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 2 36899999999999999999987653
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-16 Score=133.95 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=78.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh----hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.+.......+.++|++++|+|++++ .++..+. .+.. ....|+++|+||+|+.....
T Consensus 84 ~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-----~~~~-~~~~~iiivvNK~Dl~~~~~--- 154 (203)
T cd01888 84 HVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-----ALEI-MGLKHIIIVQNKIDLVKEEQ--- 154 (203)
T ss_pred EEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-----HHHH-cCCCcEEEEEEchhccCHHH---
Confidence 467899999998877777778889999999999873 3333332 1211 12358999999999965311
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.....++.+++...+ ...+++++||++|.|++++|+.+...+-+++
T Consensus 155 -------~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 155 -------ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred -------HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 111223444444432 1257999999999999999999998776644
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=152.59 Aligned_cols=157 Identities=18% Similarity=0.296 Sum_probs=102.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+...|+++|+.++|||||+++|...++.....+.+.... ...+..++ ..+.+|||||+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGh----------------- 347 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGH----------------- 347 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCC-----------------
Confidence 34668899999999999999999988776554433321111 11233332 34555666666
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.|..++...+..+|+++
T Consensus 348 --------------------------------------------------------------e~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 348 --------------------------------------------------------------EAFTAMRARGAQVTDIVV 365 (787)
T ss_pred --------------------------------------------------------------ccchhHHHhhhhhCCEEE
Confidence 666666666778899999
Q ss_pred EEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH--HHHHHHHHHhC-Cee
Q psy9997 219 VCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF--EQGEKLAKELK-AVK 292 (330)
Q Consensus 219 lv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~-~~~ 292 (330)
||+|+++ +++++.+. .+. ..++|+|+|+||+|+...... .+.. .+...++..++ .++
T Consensus 366 LVVdAddGv~~qT~e~i~-----~a~--~~~vPiIVviNKiDl~~a~~e----------~V~~eL~~~~~~~e~~g~~vp 428 (787)
T PRK05306 366 LVVAADDGVMPQTIEAIN-----HAK--AAGVPIIVAINKIDKPGANPD----------RVKQELSEYGLVPEEWGGDTI 428 (787)
T ss_pred EEEECCCCCCHhHHHHHH-----HHH--hcCCcEEEEEECccccccCHH----------HHHHHHHHhcccHHHhCCCce
Confidence 9999987 45554443 111 247899999999999653110 0100 00111233333 368
Q ss_pred EEEEeeccCCCHHHHHHHHHHH
Q psy9997 293 YVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
++++||++|.|++++|+.+...
T Consensus 429 ~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 429 FVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EEEEeCCCCCCchHHHHhhhhh
Confidence 9999999999999999998753
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-16 Score=151.39 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=102.9
Q ss_pred ecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccch
Q psy9997 70 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI 148 (330)
Q Consensus 70 G~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~ 148 (330)
|++|||||||+|++.+..+...+.|...... ...+..++. .+++|||||++.+.+....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~------------------ 60 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLE------------------ 60 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchH------------------
Confidence 8999999999999999876444444443332 335555554 4789999999543322100
Q ss_pred hhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc--ccCCCEEEEEEEcCCh
Q psy9997 149 RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS--YPQTDVFLVCFSVVSP 226 (330)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~--~~~~d~~ilv~d~~~~ 226 (330)
|. ....+ ..++|++++|+|.++.
T Consensus 61 ----------------------------------------------------e~---v~~~~l~~~~aDvvI~VvDat~l 85 (591)
T TIGR00437 61 ----------------------------------------------------EE---VARDYLLNEKPDLVVNVVDASNL 85 (591)
T ss_pred ----------------------------------------------------HH---HHHHHHhhcCCCEEEEEecCCcc
Confidence 11 01111 2468999999999875
Q ss_pred hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHH
Q psy9997 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKN 306 (330)
Q Consensus 227 ~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 306 (330)
+.. + .+..++.+ .+.|+++|+||+|+.+. +.+. .+.+.+++..+ ++++++||++|.|+++
T Consensus 86 er~--l--~l~~ql~~--~~~PiIIVlNK~Dl~~~------------~~i~-~d~~~L~~~lg-~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 86 ERN--L--YLTLQLLE--LGIPMILALNLVDEAEK------------KGIR-IDEEKLEERLG-VPVVPTSATEGRGIER 145 (591)
T ss_pred hhh--H--HHHHHHHh--cCCCEEEEEehhHHHHh------------CCCh-hhHHHHHHHcC-CCEEEEECCCCCCHHH
Confidence 422 1 23333333 47999999999999643 3333 35678888887 7999999999999999
Q ss_pred HHHHHHHHh
Q psy9997 307 VFDEAILAA 315 (330)
Q Consensus 307 ~f~~l~~~i 315 (330)
+|+.+.+.+
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=132.39 Aligned_cols=214 Identities=19% Similarity=0.117 Sum_probs=111.5
Q ss_pred eEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccc-------cCCCCCCCCc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR-------LRPLSYPQTD 136 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------l~~~~~~~~~ 136 (330)
+++++|++|+|||||++++.+... ...+..+.-+...-.+..++ ..+++||+||+..... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998763 23333333222222344443 5789999999754331 1235799999
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccc--cccccccccccccccccCccccCC
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVR--DRSLFDTAGQEDYDRLRPLSYPQT 214 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~D~~g~e~~~~~~~~~~~~~ 214 (330)
++++|+|............+.+....- .....+ ..+...+... .+..+ ...+-|..-..-..-+...-+.+|
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi--~l~~~~-~~v~~~~~~~---ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~ 153 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGI--RLNKRP-PNITIKKKKK---GGINITSTVPLTKLDEKTIKAILREYKIHNA 153 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCc--eecCCC-CeEEEEEEec---CCEEEeccCCCCCCCHHHHHHHHHHhCeeeE
Confidence 999999865322211111111111100 000001 0011100000 00000 001111100011111222223333
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
++ ...+ ..+.+++. ..+......+|+++|+||+|+... +++..+++. ..++
T Consensus 154 ~v--~~~~---~~~~~~~~----~~~~~~~~y~p~iiV~NK~Dl~~~-----------------~~~~~~~~~---~~~~ 204 (233)
T cd01896 154 DV--LIRE---DITVDDLI----DVIEGNRVYIPCLYVYNKIDLISI-----------------EELDLLARQ---PNSV 204 (233)
T ss_pred EE--EEcc---CCCHHHHH----HHHhCCceEeeEEEEEECccCCCH-----------------HHHHHHhcC---CCEE
Confidence 33 3332 33444443 122222345899999999998542 444455543 3589
Q ss_pred EEeeccCCCHHHHHHHHHHHh
Q psy9997 295 ECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i 315 (330)
++||++|.|++++|+.+.+.+
T Consensus 205 ~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 205 VISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEcCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=144.97 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=104.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
..|++||.+|+|||||+++++..+. ...|+.|.-....-.+...+ ..+.+||+||.-.....
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~--------------- 222 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASE--------------- 222 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccch---------------
Confidence 5799999999999999999997653 23333332222222233333 56889999997110000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+ .......-..++.+|++++|+|
T Consensus 223 ------------------------------------g---------------------~gLg~~fLrhieradvLv~VVD 245 (500)
T PRK12296 223 ------------------------------------G---------------------KGLGLDFLRHIERCAVLVHVVD 245 (500)
T ss_pred ------------------------------------h---------------------hHHHHHHHHHHHhcCEEEEEEC
Confidence 0 0000000113567999999999
Q ss_pred cCCh----hhHhhhhhcchhhhhhcC------------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 223 VVSP----SSFENVKEKWVPEITHHC------------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 223 ~~~~----~s~~~~~~~~~~~i~~~~------------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
+++. +.++++. .|..++..+. .+.|+|+|+||+|+... +.. .+.......
T Consensus 246 ~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da------------~el-~e~l~~~l~ 311 (500)
T PRK12296 246 CATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA------------REL-AEFVRPELE 311 (500)
T ss_pred CcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh------------HHH-HHHHHHHHH
Confidence 9863 3555554 4555554432 36899999999999643 111 122222333
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
..+ ++++++||+++.|+++++.++...+-+.
T Consensus 312 ~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 312 ARG-WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred HcC-CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 444 6899999999999999999998877543
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=148.77 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=74.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|..++..+++.+|++++|||+++ +++++.+. ++ .. .++|+++|+||+|+......
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~--~l---~~--~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN--IL---RM--YKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH--HH---HH--cCCCEEEEEECCCccchhhhccCc
Confidence 5577777778888888888899999999999987 66666654 22 22 37899999999999742100
Q ss_pred --hHHhhhC-------------------CCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 265 --LEKLAKN-------------------KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 265 --~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+..... .+..+..+.........+..+++++||++|+|+++++..+...
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0000000 0001111111111112234789999999999999999987643
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-15 Score=144.53 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=70.1
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|...+..+++.+|++++|+|+++....+... .|..... .+.|+++|+||+|+.... ..+.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~~~---~~lpiIvViNKiDl~~a~--------------~~~v 146 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NDLEIIPVLNKIDLPAAD--------------PERV 146 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEEECCCCCccc--------------HHHH
Confidence 444444555678899999999999876665554 4443322 378999999999986431 1122
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..++.+.++. ..++++||++|.|+++++++++..+-.+.
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 2344444442 24899999999999999999998876554
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-15 Score=126.87 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=93.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|.+.+.+|++..+ .+.+.+++..+.+.+||+++..++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------------- 64 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF----------------- 64 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 48999999999999999999999999999999998776 567888999999999998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+|++++++++|||.... .....+..|
T Consensus 65 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~~-----~s~~~~~~~ 96 (166)
T cd04122 65 -------------------------------------------RAVTRSYYRGAAGALMVYDITRR-----STYNHLSSW 96 (166)
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456689999999999984431 223345667
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+........+..++.++|+|.|+..
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 6655555556788999999999853
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-15 Score=122.31 Aligned_cols=92 Identities=23% Similarity=0.231 Sum_probs=63.0
Q ss_pred ccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh
Q psy9997 209 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL 288 (330)
Q Consensus 209 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 288 (330)
.++..+|++++|+|.++..+..... |...... .+.|+++|+||+|+..+..... ..+.........
T Consensus 71 ~~~~~~d~il~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~----------~~~~~~~~~~~~ 136 (163)
T cd00880 71 RVLERADLILFVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPEEEEEE----------LLELRLLILLLL 136 (163)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCChhhHHH----------HHHHHHhhcccc
Confidence 3567899999999999887777664 3333322 4899999999999976421100 000011122233
Q ss_pred CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 289 KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 289 ~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
...+++++||+++.|++++++.+.+.
T Consensus 137 ~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 137 LGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cCCceEEEeeeccCCHHHHHHHHHhh
Confidence 34789999999999999999998765
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-15 Score=115.50 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=111.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+.++++++|--|.|||++..|+.-.+ .....||+|.+... +..++..+++||..|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvge-vvttkPtigfnve~---v~yKNLk~~vwdLggq-------------------- 72 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGE-VVTTKPTIGFNVET---VPYKNLKFQVWDLGGQ-------------------- 72 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCc-ccccCCCCCcCccc---cccccccceeeEccCc--------------------
Confidence 56899999999999999999997665 33445666544432 1114455555555555
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
-+.+..|+.||.+.|++|.|.
T Consensus 73 -----------------------------------------------------------tSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 73 -----------------------------------------------------------TSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred -----------------------------------------------------------ccccHHHHHHhcccceEEEEE
Confidence 666777888899999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-----HHHHHhCCeeEEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-----KLAKELKAVKYVE 295 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~e 295 (330)
|.+|++-..-....++..+.+.. ....+++++||.|.... .+..|+. .-.+.. .+.+|+
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--------------~t~~E~~~~L~l~~Lk~r-~~~Iv~ 158 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--------------LTRSEVLKMLGLQKLKDR-IWQIVK 158 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--------------hhHHHHHHHhChHHHhhh-eeEEEe
Confidence 99987766655545666655433 46889999999998643 2222221 111122 278999
Q ss_pred EeeccCCCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+||..|+|++.+++++.+.+..
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eccccccCCcHHHHHHHHHHhc
Confidence 9999999999999999987754
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-15 Score=150.50 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=102.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+|+++|++|||||||++++++.++ ....+.+.-+........++ ..+.+|||+|.+....
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~--------------- 338 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVE--------------- 338 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCc---------------
Confidence 6899999999999999999998764 22222111121122233333 4577899999731000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.. ...+......+++.+|++++|+
T Consensus 339 ---------~~-----------------------------------------------~~~~~~~~~~~~~~aD~iL~Vv 362 (712)
T PRK09518 339 ---------GI-----------------------------------------------DSAIASQAQIAVSLADAVVFVV 362 (712)
T ss_pred ---------cH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 00 0223334445678999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|.++.-+ ...+.|...++. .+.|+++|+||+|+... . ......+...++ ..+++||++|
T Consensus 363 Da~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~------------~---~~~~~~~~lg~~--~~~~iSA~~g 421 (712)
T PRK09518 363 DGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQAS------------E---YDAAEFWKLGLG--EPYPISAMHG 421 (712)
T ss_pred ECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECcccccc------------h---hhHHHHHHcCCC--CeEEEECCCC
Confidence 9986432 222235555544 48999999999998532 1 111222222222 4679999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.++..+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999988855
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=124.07 Aligned_cols=118 Identities=20% Similarity=0.315 Sum_probs=92.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|++|||||||+.||..+.|...+.||+.+.+.+.+.+++..+.+++||+++..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF------------------ 62 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc------------------
Confidence 47999999999999999999999999999999999888888999999999999999873221
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.|+++++++++|||... ..+ ...+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~~s---~~~~~~~~ 95 (163)
T cd04136 63 ------------------------------------------TAMRDLYIKNGQGFVLVYSITS--QSS---FNDLQDLR 95 (163)
T ss_pred ------------------------------------------chHHHHHhhcCCEEEEEEECCC--HHH---HHHHHHHH
Confidence 3456678999999999998432 111 22444455
Q ss_pred eeeecc-CCCcccccccceeeccC
Q psy9997 163 WFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..+... ..+..|+.++|||.|+.
T Consensus 96 ~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 96 EQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred HHHHHhcCCCCCCEEEEEECcccc
Confidence 444332 34577889999999984
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-15 Score=129.01 Aligned_cols=126 Identities=24% Similarity=0.354 Sum_probs=100.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.++||+++|++|||||+|+.||+.+.|.+.|.||+++.|.+.+.+++....+.++|+++
T Consensus 1 ~~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g-------------------- 60 (196)
T KOG0395|consen 1 LREYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAG-------------------- 60 (196)
T ss_pred CCceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCC--------------------
Confidence 468999999999999999999999999999999999999999999999999999998886
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+..| ..+...|+++++++++||+ ...+.++++ +..
T Consensus 61 ----~~~~------------------------------------~~~~~~~~~~~~gF~lVys--itd~~SF~~---~~~ 95 (196)
T KOG0395|consen 61 ----QEEF------------------------------------SAMRDLYIRNGDGFLLVYS--ITDRSSFEE---AKQ 95 (196)
T ss_pred ----cccC------------------------------------hHHHHHhhccCcEEEEEEE--CCCHHHHHH---HHH
Confidence 2221 4567789999999999997 333444443 333
Q ss_pred cceee-eccCCCcccccccceeeccCCCcccc
Q psy9997 161 WFWFI-STEHSPPMKLHTLGFITNINPGWVRD 191 (330)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 191 (330)
+...+ ........|+.++|||.|+...+.+.
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~ 127 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERERQVS 127 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhccccC
Confidence 33334 33455668999999999997554443
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-15 Score=126.35 Aligned_cols=117 Identities=38% Similarity=0.621 Sum_probs=90.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
.||+++|++|||||||+.||..+.|...+.||++..+...+.+++..+.+++||+++...+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------------------- 61 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF------------------- 61 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhc-------------------
Confidence 3899999999999999999999999999999999888888888999999999998872221
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCcc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGWF 162 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~~ 162 (330)
..+++.||++++++++||+.... .++ ..+ ..|+
T Consensus 62 -----------------------------------------~~l~~~~~~~a~~~ilv~dv~~~--~sf---~~~~~~~~ 95 (189)
T cd04134 62 -----------------------------------------DRLRSLSYADTDVIMLCFSVDSP--DSL---ENVESKWL 95 (189)
T ss_pred -----------------------------------------cccccccccCCCEEEEEEECCCH--HHH---HHHHHHHH
Confidence 33566789999999999973322 122 112 2355
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+.. ..+..|+.++|||.|+..
T Consensus 96 ~~i~~-~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 96 GEIRE-HCPGVKLVLVALKCDLRE 118 (189)
T ss_pred HHHHH-hCCCCCEEEEEEChhhcc
Confidence 54443 235788999999999854
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-15 Score=141.74 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=62.8
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|.......+..+|++++|+|+++.+++......+...+.......|+++|+||+|+...... ......++
T Consensus 96 ~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~--------~~~~~~~e 167 (426)
T TIGR00483 96 RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE--------EFEAIKKE 167 (426)
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH--------HHHHHHHH
Confidence 5444333445678999999999998865432220111122222334689999999999642110 01123456
Q ss_pred HHHHHHHhC----CeeEEEEeeccCCCHHHHH
Q psy9997 281 GEKLAKELK----AVKYVECSALTQKGLKNVF 308 (330)
Q Consensus 281 ~~~~~~~~~----~~~~~e~Sa~~~~~v~~~f 308 (330)
++.+++..+ .++++++||++|.|+++++
T Consensus 168 i~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 168 VSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 777777665 2579999999999998733
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-16 Score=135.71 Aligned_cols=226 Identities=19% Similarity=0.263 Sum_probs=133.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc--cceeEEEEECCEEEEEEEeecCC-ceeEeEEEeecCCCceeEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF--DNYAVTVMIGGEPYTLGLNFART-MQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~ki~vvG~~~~GKTsl 79 (330)
++=+++||++|+|||++++|+....+....+|.+. |+....+.+. ..+.|-|+-. .+.+|-.=+|++|.--|||
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~---aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYP---ANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCc---cCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 45689999999999999999876665555555542 2222222111 1112222221 2235566689999777775
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
|-|... .+++...++-........++||||| |-+|
T Consensus 96 -NLF~tk----------~dqv~~~iek~~~~~~~~liDTPGQ-----------------IE~F----------------- 130 (366)
T KOG1532|consen 96 -NLFATK----------FDQVIELIEKRAEEFDYVLIDTPGQ-----------------IEAF----------------- 130 (366)
T ss_pred -HHHHHH----------HHHHHHHHHHhhcccCEEEEcCCCc-----------------eEEE-----------------
Confidence 222221 1111111111223456778999999 2222
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
-|..+|.---.. +...--.+++|-++.+++-.... |+++
T Consensus 131 ----------------------------------tWSAsGsIIte~-----lass~ptvv~YvvDt~rs~~p~t--FMSN 169 (366)
T KOG1532|consen 131 ----------------------------------TWSASGSIITET-----LASSFPTVVVYVVDTPRSTSPTT--FMSN 169 (366)
T ss_pred ----------------------------------EecCCccchHhh-----HhhcCCeEEEEEecCCcCCCchh--HHHH
Confidence 244444322222 22233446667666666655553 7777
Q ss_pred hhhcC-----CCCcEEEEEeccCCCCCchhhH-------------HhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 240 ITHHC-----QKTPFLLVGTQIDLREDAPTLE-------------KLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 240 i~~~~-----~~~piilV~nK~Dl~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
....+ .+.|+|+|.||+|+..+....+ +..+..-..+.......+-+.+..+..+.+||.+|
T Consensus 170 MlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 170 MLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 66654 4899999999999988653322 11111222344455566777777788999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|.+++|.++-.++-+
T Consensus 250 ~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDE 265 (366)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999998777654
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-15 Score=124.04 Aligned_cols=118 Identities=20% Similarity=0.319 Sum_probs=92.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.+|+.+.|.+.+.||+++.+...+.+++..+.+++||+++..++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF------------------ 62 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccc------------------
Confidence 47999999999999999999999999999999999888888999999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+|+++|+++++||.... .+ ...+..|.
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~ilv~d~~~~--~s---~~~~~~~~ 95 (164)
T cd04175 63 ------------------------------------------TAMRDLYMKNGQGFVLVYSITAQ--ST---FNDLQDLR 95 (164)
T ss_pred ------------------------------------------hhHHHHHHhhCCEEEEEEECCCH--HH---HHHHHHHH
Confidence 44567789999999999984321 11 22334455
Q ss_pred eeeec-cCCCcccccccceeeccC
Q psy9997 163 WFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ...+..|+.++|||.|+.
T Consensus 96 ~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 96 EQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECCcch
Confidence 44433 234678899999999985
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-15 Score=125.54 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=90.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
||+++|++|||||||++||..+.|.++|.||++..+ .+.+.+++..+.+++||+++..++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------- 62 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF------------------- 62 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH-------------------
Confidence 899999999999999999999999999999998666 578888999999999998872211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+|+++|++++|||... ..+......|+.
T Consensus 63 -----------------------------------------~~~~~~~~~~ad~~ilv~d~~~-----~~s~~~~~~~~~ 96 (170)
T cd04108 63 -----------------------------------------KCIASTYYRGAQAIIIVFDLTD-----VASLEHTRQWLE 96 (170)
T ss_pred -----------------------------------------HhhHHHHhcCCCEEEEEEECcC-----HHHHHHHHHHHH
Confidence 3356678999999999998532 223334556776
Q ss_pred eeeccCC-CcccccccceeeccC
Q psy9997 164 FISTEHS-PPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~~~-~~~~~~~~g~~~~~~ 185 (330)
.+..... ...|+.++|||.|+.
T Consensus 97 ~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 97 DALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHHHhcCCCCCeEEEEEEChhcC
Confidence 6544332 345788999999984
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-15 Score=137.97 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=71.6
Q ss_pred cccCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK 283 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 283 (330)
.++.++++++|+|++ +.+.+++.. .|+.++.... .+.|+++|+||+|+... .. ..+....
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------------~e-l~~~l~~ 299 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDE------------EE-AEERAKA 299 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCCh------------HH-HHHHHHH
Confidence 467899999999998 566777776 7888877654 36899999999999643 11 1234445
Q ss_pred HHHHhCC-eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 284 LAKELKA-VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 284 ~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+.+..+. ..++.+||+++.|++++++.+...+-+.
T Consensus 300 l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 300 IVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 5555432 3689999999999999999999887553
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-15 Score=123.15 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=92.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|..+.|.+++.||++..+ .+.+.+++..+.+++||+++..+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~------------------ 62 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY------------------ 62 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH------------------
Confidence 5899999999999999999999999999999998665 678889999999999988762111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..|++++|+++++||... ..++ ..+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~~sf---~~~~~~~ 95 (161)
T cd04117 63 ------------------------------------------QTITKQYYRRAQGIFLVYDISS--ERSY---QHIMKWV 95 (161)
T ss_pred ------------------------------------------HhhHHHHhcCCcEEEEEEECCC--HHHH---HHHHHHH
Confidence 3345678999999999998442 2222 3455676
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+........++.++|+|.|+..
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 655544445688999999999843
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=146.70 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=110.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|..++|+++|++|||||||+|++++.+...... .|..+. +...++.....+.+|||||...+......+
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~-------- 70 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT-------- 70 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccc--------
Confidence 456899999999999999999999876422111 222221 222334455678899999994433211100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+ |.... .......+|++++
T Consensus 71 -----------s~~-----------------------------------------------E~i~~-~~l~~~~aD~vI~ 91 (772)
T PRK09554 71 -----------SLD-----------------------------------------------EQIAC-HYILSGDADLLIN 91 (772)
T ss_pred -----------cHH-----------------------------------------------HHHHH-HHHhccCCCEEEE
Confidence 000 11110 0111347899999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|.++.+... .|..++.+. +.|+++|.||+|+.+. +.+ ..+.+++++.++ ++++++||+
T Consensus 92 VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~------------~~i-~id~~~L~~~LG-~pVvpiSA~ 151 (772)
T PRK09554 92 VVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEK------------QNI-RIDIDALSARLG-CPVIPLVST 151 (772)
T ss_pred EecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhc------------cCc-HHHHHHHHHHhC-CCEEEEEee
Confidence 99999865432 234444443 7999999999998643 333 356678888888 799999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++.+.+....
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999887654
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-15 Score=127.20 Aligned_cols=117 Identities=25% Similarity=0.326 Sum_probs=90.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|..+.|...+.||+++.+.+.+.+++..+.+++||+++..++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------------- 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY-------------------- 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhh--------------------
Confidence 799999999999999999999999999999999888888889999999999998872211
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..||+++|++++|||... .. +...+..|+..
T Consensus 61 ----------------------------------------~~~~~~~~~~ad~~ilv~d~~~--~~---s~~~~~~~~~~ 95 (190)
T cd04144 61 ----------------------------------------TALRDQWIREGEGFILVYSITS--RS---TFERVERFREQ 95 (190)
T ss_pred ----------------------------------------HHHHHHHHHhCCEEEEEEECCC--HH---HHHHHHHHHHH
Confidence 3356678999999999997432 11 22234455554
Q ss_pred eecc---CCCcccccccceeeccCC
Q psy9997 165 ISTE---HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 165 ~~~~---~~~~~~~~~~g~~~~~~~ 186 (330)
+... ..+..|+.++|+|.|+..
T Consensus 96 i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 96 IQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHhcccCCCCCEEEEEEChhccc
Confidence 4332 235678899999999854
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-15 Score=126.56 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=88.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|..+.|...+.||++..+ .+.+.++ +..+.+.+||+++..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~------------------- 61 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE------------------- 61 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch-------------------
Confidence 6999999999999999999999999999999998655 6678888 889999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++ ..+++.||++++++++|||... . .....+..|
T Consensus 62 -----~~------------------------------------~~~~~~~~~~a~~~ilv~D~t~--~---~s~~~~~~~ 95 (201)
T cd04107 62 -----RF------------------------------------GGMTRVYYRGAVGAIIVFDVTR--P---STFEAVLKW 95 (201)
T ss_pred -----hh------------------------------------hhhHHHHhCCCCEEEEEEECCC--H---HHHHHHHHH
Confidence 11 3456788999999999998432 1 112233344
Q ss_pred ceeeec----cCCCcccccccceeeccC
Q psy9997 162 FWFIST----EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~----~~~~~~~~~~~g~~~~~~ 185 (330)
...+.. ......|+.++|+|.|+.
T Consensus 96 ~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 96 KADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 443322 123567899999999985
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.2e-15 Score=120.72 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=97.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
.|+++|++|+|||||++++.++.+.....++.+..... ....++ .+.+|||+|......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~----------------- 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKV----------------- 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcccccc-----------------
Confidence 47899999999999999999777666555655443322 222222 788899998621100
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc---cCCCEEEEE
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY---PQTDVFLVC 220 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~---~~~d~~ilv 220 (330)
+...++.+......++ .+.++++++
T Consensus 61 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 88 (170)
T cd01876 61 ----------------------------------------------------SKEVKEKWGKLIEEYLENRENLKGVVLL 88 (170)
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHHHHhChhhhEEEEE
Confidence 0000012222222222 345788899
Q ss_pred EEcCChhhHhh--hhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-HhCCeeEEEEe
Q psy9997 221 FSVVSPSSFEN--VKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-ELKAVKYVECS 297 (330)
Q Consensus 221 ~d~~~~~s~~~--~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~e~S 297 (330)
+|.++..+... +. .|+.. . +.|+++|+||+|+..... ............+ .....+++++|
T Consensus 89 ~d~~~~~~~~~~~~~-~~l~~---~--~~~vi~v~nK~D~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 89 IDSRHGPTEIDLEML-DWLEE---L--GIPFLVVLTKADKLKKSE----------LAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred EEcCcCCCHhHHHHH-HHHHH---c--CCCEEEEEEchhcCChHH----------HHHHHHHHHHHHHhccCCCceEEEe
Confidence 99876532222 22 33332 2 589999999999964311 1112222333333 23446899999
Q ss_pred eccCCCHHHHHHHHHHH
Q psy9997 298 ALTQKGLKNVFDEAILA 314 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~ 314 (330)
|+++.|++++++.+.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-14 Score=123.89 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=57.4
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCch---hhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAP---TLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~---~~~~~~~~~~~~v~ 277 (330)
+.|......++..+|++++|+|+++..++... .|+..+.. .+.|+++|+||+|+..... ..+... .-...
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~---~l~~~ 154 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYF---KLRHI 154 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHH---HHHHH
Confidence 44544455567789999999999877766543 34444433 3589999999999862110 000000 00011
Q ss_pred HHHHHHHHHHhCC------ee----EEEEeeccCCCHH
Q psy9997 278 FEQGEKLAKELKA------VK----YVECSALTQKGLK 305 (330)
Q Consensus 278 ~~~~~~~~~~~~~------~~----~~e~Sa~~~~~v~ 305 (330)
.++...++...+. .| +++.||+.++++.
T Consensus 155 i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 155 IDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 2334444444432 22 7789999998765
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=115.03 Aligned_cols=82 Identities=26% Similarity=0.317 Sum_probs=64.2
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
...+||.++++.|.+++.+.-. +.+...+ +.|+|-|.||+|+.. .....+.+.++.+..|
T Consensus 60 ta~dad~V~ll~dat~~~~~~p------P~fa~~f-~~pvIGVITK~Dl~~-------------~~~~i~~a~~~L~~aG 119 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFP------PGFASMF-NKPVIGVITKIDLPS-------------DDANIERAKKWLKNAG 119 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCC------chhhccc-CCCEEEEEECccCcc-------------chhhHHHHHHHHHHcC
Confidence 3458999999999998765332 2233332 679999999999983 2246678888888888
Q ss_pred CeeEEEEeeccCCCHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEA 311 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l 311 (330)
.-..|++||.+|+|++++.+.|
T Consensus 120 ~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 120 VKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCeEEEECCCCcCHHHHHHHH
Confidence 7789999999999999999876
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=120.87 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=92.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|.++.|...+.||++..+ ...+..++..+.+++||+++..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~------------------ 63 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY------------------ 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH------------------
Confidence 8999999999999999999999999999999998555 557777888899999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..++++++++++|||... ......+..|+
T Consensus 64 ------------------------------------------~~~~~~~~~~~~~~l~v~d~~~-----~~s~~~~~~~~ 96 (165)
T cd01865 64 ------------------------------------------RTITTAYYRGAMGFILMYDITN-----EESFNAVQDWS 96 (165)
T ss_pred ------------------------------------------HHHHHHHccCCcEEEEEEECCC-----HHHHHHHHHHH
Confidence 2345678999999999998542 12344566777
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+.....+..|+.++|+|.|+..
T Consensus 97 ~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 97 TQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHhCCCCCCEEEEEECcccCc
Confidence 766555556778999999999854
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-15 Score=122.65 Aligned_cols=117 Identities=28% Similarity=0.503 Sum_probs=94.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
||+++|++|||||||+.+|..+.|++++.+|++ +.+.+.+.+++.++.+++|++++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~---------------------- 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ---------------------- 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------------------
Confidence 899999999999999999999999999999995 666889999999999999987751
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
++ + ..++..+++++|+++++|+. ........+..|+.
T Consensus 59 --~~----~--------------------------------~~~~~~~~~~~~~~ii~fd~-----~~~~S~~~~~~~~~ 95 (162)
T PF00071_consen 59 --ER----F--------------------------------DSLRDIFYRNSDAIIIVFDV-----TDEESFENLKKWLE 95 (162)
T ss_dssp --GG----G--------------------------------HHHHHHHHTTESEEEEEEET-----TBHHHHHTHHHHHH
T ss_pred --cc----c--------------------------------cccccccccccccccccccc-----cccccccccccccc
Confidence 11 1 23455679999999999972 22233445668888
Q ss_pred eeeccCCCcccccccceeeccCC
Q psy9997 164 FISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+........|+.++|+|.|+..
T Consensus 96 ~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 96 EIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccceeeeccccccc
Confidence 77776666789999999999853
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=120.66 Aligned_cols=120 Identities=16% Similarity=0.321 Sum_probs=94.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
.++||+++|++|||||||+.+|..+.|.+.+.||++..+ .+.+.+++..+.+++||+++..++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------------- 65 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF---------------- 65 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH----------------
Confidence 368999999999999999999999999999999998666 567888999999999988862211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|+++++||... . .....+..
T Consensus 66 --------------------------------------------~~~~~~~~~~ad~~i~v~d~~~--~---~s~~~~~~ 96 (167)
T cd01867 66 --------------------------------------------RTITTAYYRGAMGIILVYDITD--E---KSFENIRN 96 (167)
T ss_pred --------------------------------------------HHHHHHHhCCCCEEEEEEECcC--H---HHHHhHHH
Confidence 2234567899999999998432 2 22345667
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+........|+.++|+|.|+..
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 77776665556788999999999853
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-14 Score=119.00 Aligned_cols=118 Identities=28% Similarity=0.367 Sum_probs=90.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.+|..+.|...+.||+++.+.+.+.+++..+.+++||+++..++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------ 62 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY------------------ 62 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch------------------
Confidence 47999999999999999999999999999999999888888889999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..|++++++++++|+... ..++ ..+..|.
T Consensus 63 ------------------------------------------~~l~~~~~~~~~~~i~v~~~~~--~~s~---~~~~~~~ 95 (162)
T cd04138 63 ------------------------------------------SAMRDQYMRTGEGFLCVFAINS--RKSF---EDIHTYR 95 (162)
T ss_pred ------------------------------------------HHHHHHHHhcCCEEEEEEECCC--HHHH---HHHHHHH
Confidence 4456678999999999997442 2222 2333344
Q ss_pred eeeecc-CCCcccccccceeeccC
Q psy9997 163 WFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..+... ..+..|+.++|||.|+.
T Consensus 96 ~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 96 EQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECcccc
Confidence 444332 23567889999999984
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-14 Score=118.83 Aligned_cols=117 Identities=45% Similarity=0.822 Sum_probs=89.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+|++++|++|||||||+.+|..+.|..+|.||+.+.+...+.+++..+.+++||+++..++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------- 61 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF------------------- 61 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh-------------------
Confidence 6999999999999999999999999999999998888888899999999999998873111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..+++.+++++|+++++||..... ++. .....|+.
T Consensus 62 -----------------------------------------~~~~~~~~~~a~~~i~v~d~~~~~--sf~--~~~~~~~~ 96 (173)
T cd04130 62 -----------------------------------------DKLRPLCYPDTDVFLLCFSVVNPS--SFQ--NISEKWIP 96 (173)
T ss_pred -----------------------------------------ccccccccCCCcEEEEEEECCCHH--HHH--HHHHHHHH
Confidence 334567899999999999844321 111 11123544
Q ss_pred eeeccCCCcccccccceeeccC
Q psy9997 164 FISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.+.. ..+..|+.++|||.|+.
T Consensus 97 ~~~~-~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 97 EIRK-HNPKAPIILVGTQADLR 117 (173)
T ss_pred HHHh-hCCCCCEEEEeeChhhc
Confidence 4432 23467889999999984
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=118.38 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=89.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++||+.+.|...+.||++..+ ...+..++..+.+.+||++++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF------------------ 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh------------------
Confidence 6999999999999999999999999999999997555 556777889999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+|+++|++++|||.+. ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~i~v~d~~~-----~~s~~~~~~~~ 95 (166)
T cd00877 63 ------------------------------------------GGLRDGYYIGGQCAIIMFDVTS-----RVTYKNVPNWH 95 (166)
T ss_pred ------------------------------------------ccccHHHhcCCCEEEEEEECCC-----HHHHHHHHHHH
Confidence 2345567899999999998442 12223455677
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+..... ..|+.++|+|.|+.
T Consensus 96 ~~i~~~~~-~~piiiv~nK~Dl~ 117 (166)
T cd00877 96 RDLVRVCG-NIPIVLCGNKVDIK 117 (166)
T ss_pred HHHHHhCC-CCcEEEEEEchhcc
Confidence 66655433 78899999999985
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-14 Score=119.13 Aligned_cols=119 Identities=21% Similarity=0.311 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+++|..+.|...+.+|+.+.+.+.+.+++..+.+++||+++..++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------------------- 61 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF------------------- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------------------
Confidence 5999999999999999999999999999999999888888889999999999998872221
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++++++++++|+.... .....+..|..
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~~~ 95 (164)
T smart00173 62 -----------------------------------------SAMRDQYMRTGEGFLLVYSITDR-----QSFEEIKKFRE 95 (164)
T ss_pred -----------------------------------------hHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHHHHH
Confidence 23455678999999999984421 11223344443
Q ss_pred eeec-cCCCcccccccceeeccCCC
Q psy9997 164 FIST-EHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 164 ~~~~-~~~~~~~~~~~g~~~~~~~~ 187 (330)
.+.. ......|+.++|||.|+...
T Consensus 96 ~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 96 QILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHHHhcCCCCCCEEEEEECcccccc
Confidence 3322 23346788999999998643
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-14 Score=132.31 Aligned_cols=159 Identities=21% Similarity=0.185 Sum_probs=110.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..|+++|.+|||||||.||+++.+. .++++.+.-+.......+.+.. +.+.||+|.+.-..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~--------------- 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDE--------------- 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCc---------------
Confidence 5699999999999999999999874 5666666666666667776666 77889999832110
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
..+ ++.........+..||++++|.
T Consensus 67 --------~~l-----------------------------------------------~~~i~~Qa~~Ai~eADvilfvV 91 (444)
T COG1160 67 --------DEL-----------------------------------------------QELIREQALIAIEEADVILFVV 91 (444)
T ss_pred --------hHH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 000 0233344555678999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|...--+-.+. ...+.++ ..+.|++||+||+|-... .+.+.+|. .+|.-.++.+||.+|
T Consensus 92 D~~~Git~~D~--~ia~~Lr--~~~kpviLvvNK~D~~~~----------------e~~~~efy-slG~g~~~~ISA~Hg 150 (444)
T COG1160 92 DGREGITPADE--EIAKILR--RSKKPVILVVNKIDNLKA----------------EELAYEFY-SLGFGEPVPISAEHG 150 (444)
T ss_pred eCCCCCCHHHH--HHHHHHH--hcCCCEEEEEEcccCchh----------------hhhHHHHH-hcCCCCceEeehhhc
Confidence 98763333332 2333333 247999999999998532 12222232 334457899999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|+.+++++++..+
T Consensus 151 ~Gi~dLld~v~~~l 164 (444)
T COG1160 151 RGIGDLLDAVLELL 164 (444)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999999987
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-14 Score=121.65 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|..+.|...+.+|++..+ .+.+.+++..+.+++||+++....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~------------------ 62 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF------------------ 62 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH------------------
Confidence 6999999999999999999999999988999998666 567888899999999988862111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+++++|+++++||.... .....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~iilv~d~~~~-----~s~~~i~~~~ 95 (188)
T cd04125 63 ------------------------------------------RSLNNSYYRGAHGYLLVYDVTDQ-----ESFENLKFWI 95 (188)
T ss_pred ------------------------------------------HhhHHHHccCCCEEEEEEECcCH-----HHHHHHHHHH
Confidence 23456678999999999985431 2233445576
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+........++.++|+|.|+.
T Consensus 96 ~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 96 NEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHHHHhCCCCCeEEEEEECCCCc
Confidence 66655545557889999999985
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=139.81 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=73.6
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|..++...+..+|++++|+|+++ +++++.+. ++ .. .++|+++|+||+|+......
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~--~~---~~--~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN--IL---KR--RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH--HH---HH--cCCCEEEEEECcCCchhhhhhcCc
Confidence 4578888888888888878889999999999997 77777665 22 11 47899999999998531000
Q ss_pred --hHHhhhC-------------------CCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 265 --LEKLAKN-------------------KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 265 --~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.+..+.. ....+..+......+..+..+++++||++|.|++++++.+..
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000000 000011111111111123467999999999999999988764
|
|
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-16 Score=118.02 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=91.4
Q ss_pred EEcCCCCChhHHHHHHHhCCCCC-CCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeecc
Q psy9997 8 VVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
++||+++|||||+.||-.+.|-. +.++|++-.| .+-+.++++.+++++|++++ +
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtag------------------------q 57 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG------------------------Q 57 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccc------------------------h
Confidence 78999999999999999998865 5789998777 66889999999999999998 4
Q ss_pred CCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee
Q psy9997 86 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI 165 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (330)
++| ++....|||+||+.+++||... ..+......|+.++
T Consensus 58 erf------------------------------------rsvt~ayyrda~allllydian-----kasfdn~~~wlsei 96 (192)
T KOG0083|consen 58 ERF------------------------------------RSVTHAYYRDADALLLLYDIAN-----KASFDNCQAWLSEI 96 (192)
T ss_pred HHH------------------------------------hhhhHhhhcccceeeeeeeccc-----chhHHHHHHHHHHH
Confidence 444 6667889999999999997443 12233445566666
Q ss_pred eccCCCcccccccceeeccCC
Q psy9997 166 STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 166 ~~~~~~~~~~~~~g~~~~~~~ 186 (330)
-........+.+.|+|+|+.+
T Consensus 97 ~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 97 HEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred HHHHHhhHhHhhhccccccch
Confidence 666667788899999999854
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-14 Score=117.20 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=89.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+++|+.+.|...+.||++..+...+..+...+.+++||+++..++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------- 62 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF------------------- 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc-------------------
Confidence 7999999999999999999999999999999998888878888889999999998872221
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++.++++++|||.... . ....+..|+.
T Consensus 63 -----------------------------------------~~~~~~~~~~~~~~ilv~d~~~~--~---s~~~~~~~~~ 96 (165)
T cd04140 63 -----------------------------------------PAMQRLSISKGHAFILVYSVTSK--Q---SLEELKPIYE 96 (165)
T ss_pred -----------------------------------------hHHHHHHhhcCCEEEEEEECCCH--H---HHHHHHHHHH
Confidence 23445678899999999984321 1 2223444444
Q ss_pred eeec---cCCCcccccccceeeccCC
Q psy9997 164 FIST---EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~---~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.. ...+..|+.++|+|.|+..
T Consensus 97 ~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 97 LICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhcCCCCCCCEEEEEECccccc
Confidence 3322 2236788999999999853
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-14 Score=122.59 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=112.2
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
+++.--++++|.+|||||||+|++++.+. .+....|.-....-.+..+ ...+.+.||||.-.-+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk------------ 68 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPK------------ 68 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcc------------
Confidence 45667899999999999999999999885 3333444433333222222 6677788999971100
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+..+ +.........+.++|++
T Consensus 69 ------------~~l~-----------------------------------------------~~m~~~a~~sl~dvDli 89 (298)
T COG1159 69 ------------HALG-----------------------------------------------ELMNKAARSALKDVDLI 89 (298)
T ss_pred ------------hHHH-----------------------------------------------HHHHHHHHHHhccCcEE
Confidence 0000 22334445567899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|.|.+....-.+- ..++.++. .+.|++++.||+|.... ..........+.........+++|
T Consensus 90 lfvvd~~~~~~~~d~--~il~~lk~--~~~pvil~iNKID~~~~------------~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 90 LFVVDADEGWGPGDE--FILEQLKK--TKTPVILVVNKIDKVKP------------KTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred EEEEeccccCCccHH--HHHHHHhh--cCCCeEEEEEccccCCc------------HHHHHHHHHHHHhhCCcceEEEee
Confidence 999999874433221 23444544 46899999999999875 221223333444444445689999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|+.|.|++.+.+.+...+-+.
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCC
Confidence 999999999999888777553
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-14 Score=124.08 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=93.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|..++.+|++..+ .+.+.+++..+.+++||+++..++
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~----------------- 74 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY----------------- 74 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 58999999999999999999999999999999998666 678899999999999988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+...++++++++++|||... . .....+..|
T Consensus 75 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~---~s~~~~~~~ 106 (216)
T PLN03110 75 -------------------------------------------RAITSAYYRGAVGALLVYDITK--R---QTFDNVQRW 106 (216)
T ss_pred -------------------------------------------HHHHHHHhCCCCEEEEEEECCC--h---HHHHHHHHH
Confidence 3345678999999999998432 1 222345567
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++.++|+|.|+.
T Consensus 107 ~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 107 LRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHHHHhCCCCCeEEEEEEChhcc
Confidence 666555555678999999999984
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-14 Score=118.71 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=89.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|+.+.|.+.+.||++..+ .+.+.+++..+.+++||+++....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY------------------ 62 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH------------------
Confidence 6999999999999999999999999999999998666 668888999999999998872111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.+++++++++++||.... . ....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~ilv~D~~~~--~---s~~~~~~~~ 95 (168)
T cd04119 63 ------------------------------------------LEVRNEFYKDTQGVLLVYDVTDR--Q---SFEALDSWL 95 (168)
T ss_pred ------------------------------------------HHHHHHHhccCCEEEEEEECCCH--H---HHHhHHHHH
Confidence 23456688999999999984432 1 123344565
Q ss_pred eeeeccC-----CCcccccccceeeccC
Q psy9997 163 WFISTEH-----SPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~-----~~~~~~~~~g~~~~~~ 185 (330)
..+.... ....|+.++|+|.|+.
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcc
Confidence 5444332 2467889999999984
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-14 Score=123.51 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=60.5
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH---
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK--- 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 286 (330)
.+.++|.++++.+ .+|......|+..+.+. +.|+++|+||+|+............. .+....++.++.+.
T Consensus 77 ~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~-~~~~~l~~i~~~~~~~~ 149 (197)
T cd04104 77 KFSEYDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSF-NREQVLQEIRDNCLENL 149 (197)
T ss_pred CccCcCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccc-cHHHHHHHHHHHHHHHH
Confidence 4667898888732 23555544677777665 68999999999996532211100000 01111122222222
Q ss_pred -Hh--CCeeEEEEeec--cCCCHHHHHHHHHHHhcCC
Q psy9997 287 -EL--KAVKYVECSAL--TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 287 -~~--~~~~~~e~Sa~--~~~~v~~~f~~l~~~i~~~ 318 (330)
.. ...++|-+|+. .+.++.++.+.++..+-++
T Consensus 150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 11 12468999998 5799999999998887543
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=117.85 Aligned_cols=118 Identities=17% Similarity=0.355 Sum_probs=91.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++||+++|++|||||||+.++.++.|...+.+|++..+ .+.+.+++..+.+++||+++..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------------------- 62 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE------------------- 62 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 58999999999999999999999999999999998555 6678889999999999888611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++ ..++..++++++++++|||.+. ......+..|
T Consensus 63 -----~~------------------------------------~~~~~~~~~~~~~ii~v~d~~~-----~~s~~~l~~~ 96 (166)
T cd01869 63 -----RF------------------------------------RTITSSYYRGAHGIIIVYDVTD-----QESFNNVKQW 96 (166)
T ss_pred -----hH------------------------------------HHHHHHHhCcCCEEEEEEECcC-----HHHHHhHHHH
Confidence 11 2345567899999999998542 1233344556
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+..+|+|.|+.
T Consensus 97 ~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 97 LQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred HHHHHHhCCCCCcEEEEEEChhcc
Confidence 665554444667889999999984
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=111.16 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=80.9
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~ 273 (330)
++++|||+||.-++..+++.+.+.+++.|.+.+..|+.. ..+..+.... .+|+++.+||.|+...
T Consensus 72 LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~--~ii~f~~~~~-~ip~vVa~NK~DL~~a------------ 136 (187)
T COG2229 72 LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAE--EIIDFLTSRN-PIPVVVAINKQDLFDA------------ 136 (187)
T ss_pred EecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHH--HHHHHHhhcc-CCCEEEEeeccccCCC------------
Confidence 345555588888888999999999999999999999443 3444444432 3999999999999864
Q ss_pred CCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHH-hcC
Q psy9997 274 KPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILA-ALE 317 (330)
Q Consensus 274 ~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~-i~~ 317 (330)
.+.+..+++.+.. -..+.++++|..++++.+.++.+... .+.
T Consensus 137 --~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~~~~~ 180 (187)
T COG2229 137 --LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLG 180 (187)
T ss_pred --CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhhcccC
Confidence 4555555555443 23789999999999999999988776 443
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-14 Score=121.74 Aligned_cols=109 Identities=24% Similarity=0.293 Sum_probs=70.5
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.++|+||+..|.......+..+|++++|.|+.+.-.-.... .+..+.. .++|+++|.||+|+.....
T Consensus 73 ~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~--~~~p~ivvlNK~D~~~~~~--------- 139 (188)
T PF00009_consen 73 TLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILRE--LGIPIIVVLNKMDLIEKEL--------- 139 (188)
T ss_dssp EEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHHH--TT-SEEEEEETCTSSHHHH---------
T ss_pred eecccccccceeecccceecccccceeeeeccccccccccc--ccccccc--cccceEEeeeeccchhhhH---------
Confidence 34455555666555556688899999999998653333322 3333333 3789999999999973210
Q ss_pred CCCcCHHHHHHHHHHhC-----CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 273 QKPISFEQGEKLAKELK-----AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 273 ~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
..+..+....+.+..+ .++++.+||.+|.|++++++.+.+.+
T Consensus 140 -~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 140 -EEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp -HHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 1112222224544442 36899999999999999999987654
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-14 Score=116.73 Aligned_cols=115 Identities=15% Similarity=0.263 Sum_probs=88.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc-ceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||..+.|.+.+.+|.+. .+.....+++..+.+++||+++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------------------- 61 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER------------------- 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-------------------
Confidence 69999999999999999999999999999888864 4466788899999999999887221
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
| ..+++.|++++|++++|||.+.. .....+..|+
T Consensus 62 -----~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~~ 95 (161)
T cd04124 62 -----F------------------------------------QTMHASYYHKAHACILVFDVTRK-----ITYKNLSKWY 95 (161)
T ss_pred -----h------------------------------------hhhhHHHhCCCCEEEEEEECCCH-----HHHHHHHHHH
Confidence 1 34567789999999999984321 1123344566
Q ss_pred eeeeccCCCcccccccceeecc
Q psy9997 163 WFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
..+.. ..+..|+.++|+|.|+
T Consensus 96 ~~i~~-~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 96 EELRE-YRPEIPCIVVANKIDL 116 (161)
T ss_pred HHHHH-hCCCCcEEEEEECccC
Confidence 55533 2356788999999997
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-14 Score=134.05 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=67.1
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|++.|.......+..+|++++|+|++++.++......++..+ ......|+++|+||+|+.......
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~~~iivviNK~Dl~~~~~~~----- 158 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGINQLIVAINKMDAVNYDEKR----- 158 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCCCeEEEEEEccccccccHHH-----
Confidence 34567777767665544445678999999999987422222221122222 222235799999999997521100
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHHHHH
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLKNVF 308 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~f 308 (330)
-....+++.++.+..+. .+++++||++|.|+++.+
T Consensus 159 ---~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 ---YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ---HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 01233556666665552 579999999999998744
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-14 Score=123.71 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=88.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECC-EEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGG-EPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+++|..+.|...|.||++ +.+.+.+.+++ ..+.+++||+++..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~------------------- 61 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS------------------- 61 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-------------------
Confidence 6999999999999999999999999999999997 55677888864 68999999888611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..+...||+++|++++|||.+. ..+ ...+..|
T Consensus 62 -----~~------------------------------------~~l~~~~~~~ad~iilV~D~t~--~~s---~~~~~~w 95 (215)
T cd04109 62 -----IG------------------------------------GKMLDKYIYGAHAVFLVYDVTN--SQS---FENLEDW 95 (215)
T ss_pred -----HH------------------------------------HHHHHHHhhcCCEEEEEEECCC--HHH---HHHHHHH
Confidence 11 3345678999999999998432 112 2344456
Q ss_pred ceeeeccC---CCcccccccceeeccC
Q psy9997 162 FWFISTEH---SPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~---~~~~~~~~~g~~~~~~ 185 (330)
...+.... ....++.++|+|.|+.
T Consensus 96 ~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 96 YSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHhccccCCCceEEEEEECcccc
Confidence 65554322 2445788999999985
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-14 Score=134.26 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=76.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChh----hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS----SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~----s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|...+...+..+|++++|+|+++.. +.+.+. .+ ......|+++|+||+|+.....
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-----~l-~~~gi~~iIVvvNK~Dl~~~~~--- 151 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-----AL-EIIGIKNIVIVQNKIDLVSKEK--- 151 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-----HH-HHcCCCeEEEEEEccccCCHHH---
Confidence 4567888888988777766777899999999998643 333332 22 2222357999999999975311
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.....++...+.+.. ..++++++||++|.|++++++.+...+-.+
T Consensus 152 -------~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 152 -------ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred -------HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 111223444444432 136899999999999999999998766433
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-14 Score=120.26 Aligned_cols=117 Identities=42% Similarity=0.748 Sum_probs=89.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+++|.++.|...+.||++..+...+... +..+.+.+||+++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~------------------- 61 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE------------------- 61 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-------------------
Confidence 59999999999999999999999999999999998887777776 8889999999887211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGW 161 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~ 161 (330)
+ ..+++.+++++|++++|||... ..++ ..+ ..|
T Consensus 62 -----~------------------------------------~~~~~~~~~~ad~ii~v~d~~~--~~s~---~~~~~~~ 95 (187)
T cd04132 62 -----Y------------------------------------DRLRPLSYPDVDVLLICYAVDN--PTSL---DNVEDKW 95 (187)
T ss_pred -----H------------------------------------HHHHHHhCCCCCEEEEEEECCC--HHHH---HHHHHHH
Confidence 1 3345668899999999998542 1222 122 235
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ..+..|+.++|+|.|+..
T Consensus 96 ~~~~~~-~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 96 FPEVNH-FCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHHH-hCCCCCEEEEEeChhhhh
Confidence 544332 346788999999999853
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-14 Score=122.48 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=87.4
Q ss_pred EcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeeccCC
Q psy9997 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 9 lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
||++|||||||+.||+.+.|...|.||++..+ ...+.+++..+.+++||+++.. +
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e------------------------~ 56 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE------------------------K 56 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch------------------------h
Confidence 69999999999999999999999999998555 6678889999999999998722 2
Q ss_pred CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeec
Q psy9997 88 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFIST 167 (330)
Q Consensus 88 ~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (330)
| +.+++.||++++++++|||.+.. .....+..|...+..
T Consensus 57 ~------------------------------------~~l~~~~~~~ad~~ilV~D~t~~-----~S~~~i~~w~~~i~~ 95 (200)
T smart00176 57 F------------------------------------GGLRDGYYIQGQCAIIMFDVTAR-----VTYKNVPNWHRDLVR 95 (200)
T ss_pred h------------------------------------hhhhHHHhcCCCEEEEEEECCCh-----HHHHHHHHHHHHHHH
Confidence 1 45677899999999999985432 122334556665544
Q ss_pred cCCCcccccccceeeccC
Q psy9997 168 EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 168 ~~~~~~~~~~~g~~~~~~ 185 (330)
. .+..|+.++|||.|+.
T Consensus 96 ~-~~~~piilvgNK~Dl~ 112 (200)
T smart00176 96 V-CENIPIVLCGNKVDVK 112 (200)
T ss_pred h-CCCCCEEEEEECcccc
Confidence 3 3578999999999984
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-14 Score=118.05 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=92.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|+.+.|+..+.+|++..+ .+.+.+++..+.+++||+++...++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 65 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR--------------- 65 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---------------
Confidence 468999999999999999999999999999999997554 6688899999999999888622110
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+...|++++|++++|||... ......+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~-----~~s~~~~~~ 96 (170)
T cd04115 66 --------------------------------------------KSMVQHYYRNVHAVVFVYDVTN-----MASFHSLPS 96 (170)
T ss_pred --------------------------------------------HhhHHHhhcCCCEEEEEEECCC-----HHHHHhHHH
Confidence 1234567899999999998542 222334556
Q ss_pred cceeeecc-CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .....|+.++|+|.|+..
T Consensus 97 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 97 WIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchh
Confidence 76655543 346789999999999853
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-14 Score=116.34 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=92.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
|.+||+++|++|||||||+.+|+.+.|...+.+|+.+.+.....+++..+.+++||++++.++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 63 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF----------------- 63 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-----------------
Confidence 579999999999999999999999999999999999888878889999999999999872221
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++||+... ... ...+..|
T Consensus 64 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~~s---~~~~~~~ 95 (164)
T cd04145 64 -------------------------------------------SAMREQYMRTGEGFLLVFSVTD--RGS---FEEVDKF 95 (164)
T ss_pred -------------------------------------------hHHHHHHHhhCCEEEEEEECCC--HHH---HHHHHHH
Confidence 2345568899999999997443 111 2234445
Q ss_pred ceeeecc-CCCcccccccceeeccC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+..+... .....|+.+++||.|+.
T Consensus 96 ~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 96 HTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred HHHHHHHhCCCCCCEEEEeeCcccc
Confidence 5544432 34567889999999985
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-14 Score=117.12 Aligned_cols=116 Identities=48% Similarity=0.806 Sum_probs=89.5
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeecc
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
|+++|++|||||||+.+|..+.|...+.+|+.+.+...+.+++..+.+.+||+++...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------------------- 59 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY--------------------- 59 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc---------------------
Confidence 58999999999999999999999999999999888888899999999999998872211
Q ss_pred CCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee
Q psy9997 86 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI 165 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (330)
..+++.+++++|+++++||... ..+++ .....|+..+
T Consensus 60 ---------------------------------------~~~~~~~~~~~d~~ilv~d~~~--~~s~~--~~~~~~~~~i 96 (174)
T smart00174 60 ---------------------------------------DRLRPLSYPDTDVFLICFSVDS--PASFE--NVKEKWYPEV 96 (174)
T ss_pred ---------------------------------------chhchhhcCCCCEEEEEEECCC--HHHHH--HHHHHHHHHH
Confidence 2345668999999999998432 12221 1113465555
Q ss_pred eccCCCcccccccceeeccCC
Q psy9997 166 STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 166 ~~~~~~~~~~~~~g~~~~~~~ 186 (330)
... .+..|+.++|+|.|+..
T Consensus 97 ~~~-~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 97 KHF-CPNTPIILVGTKLDLRE 116 (174)
T ss_pred Hhh-CCCCCEEEEecChhhhh
Confidence 433 35789999999999853
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-14 Score=120.12 Aligned_cols=118 Identities=20% Similarity=0.296 Sum_probs=91.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.||++..+ ...+.+++..+.+++||+++...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----------------- 68 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF----------------- 68 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH-----------------
Confidence 68999999999999999999999999999999998555 668888899999999988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..|+++++++++|||.+.. . ....+..|
T Consensus 69 -------------------------------------------~~~~~~~~~~a~~iilv~D~~~~--~---s~~~~~~~ 100 (199)
T cd04110 69 -------------------------------------------RTITSTYYRGTHGVIVVYDVTNG--E---SFVNVKRW 100 (199)
T ss_pred -------------------------------------------HHHHHHHhCCCcEEEEEEECCCH--H---HHHHHHHH
Confidence 33456789999999999985432 2 22345566
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ..+..|+.++|+|.|+..
T Consensus 101 ~~~i~~-~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 101 LQEIEQ-NCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHH-hCCCCCEEEEEECccccc
Confidence 665433 235678889999999853
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-14 Score=116.91 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=93.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.++..+.|...+.+|++..+ .+.+.+++..+.+.+||+++..++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------------- 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF---------------- 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH----------------
Confidence 468999999999999999999999999999999997544 678888999899999998872221
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|+++++||.... .....+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~~llv~d~~~~-----~s~~~~~~ 96 (165)
T cd01864 66 --------------------------------------------RTITQSYYRSANGAIIAYDITRR-----SSFESVPH 96 (165)
T ss_pred --------------------------------------------HHHHHHHhccCCEEEEEEECcCH-----HHHHhHHH
Confidence 22455678999999999985421 12234556
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++|+|.|+.
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccc
Confidence 7776665556678889999999985
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-14 Score=116.98 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=89.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+||+++|++|||||||+.+|..+.|.+.+.+|++..+ .+.+.+++..+.+++||++++.++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------------- 67 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF--------------- 67 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH---------------
Confidence 3579999999999999999999999999999999998655 568889999999999988872221
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..++..+++++|+++++|+.... . ....+.
T Consensus 68 ---------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~ 97 (170)
T cd04116 68 ---------------------------------------------RSLRTPFYRGSDCCLLTFAVDDS--Q---SFQNLS 97 (170)
T ss_pred ---------------------------------------------HHhHHHHhcCCCEEEEEEECCCH--H---HHHhHH
Confidence 34566789999999999973321 1 122333
Q ss_pred Ccceeeec----cCCCcccccccceeeccC
Q psy9997 160 GWFWFIST----EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~----~~~~~~~~~~~g~~~~~~ 185 (330)
.|...+.. ......|+.++|||.|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 44443322 123567889999999984
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-14 Score=116.21 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=86.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+||..||+..++++..+|..++++|.++|.++++-|+.....+-..+.+. ..++|+++.+||.|+...
T Consensus 71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--------- 141 (197)
T KOG0076|consen 71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--------- 141 (197)
T ss_pred eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh---------
Confidence 4566666668888999999999999999999999999999884444444332 368999999999999754
Q ss_pred CCCCCcCHHHHH---HHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 271 NKQKPISFEQGE---KLAKELK--AVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 271 ~~~~~v~~~~~~---~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
....+.. ..++..+ .+++..+||.+|.||++..++++..+-++
T Consensus 142 -----~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 142 -----MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred -----hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2222222 2222222 25799999999999999999999998876
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-13 Score=118.04 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=87.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|+++.|.. .|.+|++..+ .+.+.+++..+.+++||+++..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------------- 63 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY----------------- 63 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 599999999999999999999999985 7899998776 568899999999999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+|+++|++++|||.... .+ ...+..|
T Consensus 64 -------------------------------------------~~~~~~~~~~~d~iilv~d~~~~--~s---~~~~~~~ 95 (193)
T cd04118 64 -------------------------------------------EAMSRIYYRGAKAAIVCYDLTDS--SS---FERAKFW 95 (193)
T ss_pred -------------------------------------------hhhhHhhcCCCCEEEEEEECCCH--HH---HHHHHHH
Confidence 23455688999999999984321 11 2233445
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+... .+..|+.++|+|.|+.
T Consensus 96 ~~~i~~~-~~~~piilv~nK~Dl~ 118 (193)
T cd04118 96 VKELQNL-EEHCKIYLCGTKSDLI 118 (193)
T ss_pred HHHHHhc-CCCCCEEEEEEccccc
Confidence 5544332 3467899999999984
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-14 Score=121.97 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=90.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEE-CCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMI-GGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++||+++|++|||||||+++|..+.|...+.||++.. +.+.+.+ ++..+.+++||+++..++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------------- 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF---------------- 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH----------------
Confidence 5899999999999999999999999999999999744 4667777 577899999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+...||+++|++++|||... ......+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~iilv~D~~~-----~~Sf~~l~~ 96 (211)
T cd04111 66 --------------------------------------------RSITRSYYRNSVGVLLVFDITN-----RESFEHVHD 96 (211)
T ss_pred --------------------------------------------HHHHHHHhcCCcEEEEEEECCC-----HHHHHHHHH
Confidence 3345678999999999998432 122335566
Q ss_pred cceeeeccCC-CcccccccceeeccCC
Q psy9997 161 WFWFISTEHS-PPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~g~~~~~~~ 186 (330)
|+..+..... ...++.++|+|.|+..
T Consensus 97 ~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 97 WLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 7766654332 3456788999999864
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-14 Score=118.41 Aligned_cols=119 Identities=23% Similarity=0.311 Sum_probs=88.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC----------CEEEEEEEeecCCceeEeEEEeec
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG----------GEPYTLGLNFARTMQTIKCVVVGD 71 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~ki~vvG~ 71 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+. +..+.+++||++++.++
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------- 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence 58999999999999999999999999999999998655 4455543 46788999988872221
Q ss_pred CCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhh
Q psy9997 72 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRS 151 (330)
Q Consensus 72 ~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~ 151 (330)
..++..+++++|++++|||... .
T Consensus 77 -----------------------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~-- 99 (180)
T cd04127 77 -----------------------------------------------------RSLTTAFFRDAMGFLLIFDLTN--E-- 99 (180)
T ss_pred -----------------------------------------------------HHHHHHHhCCCCEEEEEEECCC--H--
Confidence 3345678999999999998442 1
Q ss_pred cccccccCCcceeeecc-CCCcccccccceeeccCC
Q psy9997 152 VDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
.....+..|+..+... ..+..|+.++|+|.|+..
T Consensus 100 -~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 100 -QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred -HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 2223345566655443 345678899999999853
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=118.94 Aligned_cols=188 Identities=17% Similarity=0.121 Sum_probs=110.6
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+.+++||.+|+|||+|.|++++.+............-...-.+......+.++||||.-.....+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~---------- 138 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR---------- 138 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh----------
Confidence 3567899999999999999999999988643322222111111122334456678899999611000000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
...+ ..+-+-.......||.+++
T Consensus 139 ----------------------------------------~~l~-----------------~s~lq~~~~a~q~AD~vvV 161 (379)
T KOG1423|consen 139 ----------------------------------------HHLM-----------------MSVLQNPRDAAQNADCVVV 161 (379)
T ss_pred ----------------------------------------HHHH-----------------HHhhhCHHHHHhhCCEEEE
Confidence 0000 0011112234567999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCC-CCc---CHHHHHHHHHHh-------
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ-KPI---SFEQGEKLAKEL------- 288 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~-~~v---~~~~~~~~~~~~------- 288 (330)
++|+++....-+.+ .+..+... +++|-++|.||.|+.....-+-.++..-. .++ ..+..++|...-
T Consensus 162 v~Das~tr~~l~p~--vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~ 238 (379)
T KOG1423|consen 162 VVDASATRTPLHPR--VLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRT 238 (379)
T ss_pred EEeccCCcCccChH--HHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCccccccc
Confidence 99999855443332 44444443 68999999999999876443332221111 111 222222222211
Q ss_pred -----CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 289 -----KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 289 -----~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+.-.+|.+||++|+|++++-++++..+..
T Consensus 239 ~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 239 ICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 01248999999999999999999887753
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=114.40 Aligned_cols=118 Identities=49% Similarity=0.866 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+++|..+.|.+.+.||+.+.+...+.+++..+.+++||+++...+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------- 61 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY------------------- 61 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc-------------------
Confidence 6999999999999999999999999999999998888888889999999999998872211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..++++++++++||+.... .++ ......|+.
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~ilv~~~~~~--~s~--~~~~~~~~~ 96 (174)
T cd04135 62 -----------------------------------------DRLRPLSYPMTDVFLICFSVVNP--ASF--QNVKEEWVP 96 (174)
T ss_pred -----------------------------------------cccccccCCCCCEEEEEEECCCH--HHH--HHHHHHHHH
Confidence 22355678999999999974321 221 111123544
Q ss_pred eeeccCCCcccccccceeeccCC
Q psy9997 164 FISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+... .+..|+.++|+|.|+..
T Consensus 97 ~l~~~-~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 97 ELKEY-APNVPYLLVGTQIDLRD 118 (174)
T ss_pred HHHhh-CCCCCEEEEeEchhhhc
Confidence 44333 56788899999999853
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=130.59 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=74.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh----hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|..........+|++++|+|++++ .+.+.+. .+.. ....|+++|+||+|+..+..
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-----~l~~-~~i~~iiVVlNK~Dl~~~~~--- 156 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-----ALDI-IGIKNIVIVQNKIDLVSKER--- 156 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-----HHHH-cCCCcEEEEEEeeccccchh---
Confidence 456788888888765544455678999999999954 3333332 1211 12347999999999975311
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.....++...+++.. ...+++++||++|.|++++++.+...+-.+
T Consensus 157 -------~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 157 -------ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred -------HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 111223444454432 126899999999999999999998876544
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=135.76 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=70.1
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhh
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~ 269 (330)
+||++|++.|.......+..+|++++|+|+++ +.+.+.+. ++ .. .++| +++|+||+|+.....
T Consensus 55 ~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~--il---~~--lgi~~iIVVlNKiDlv~~~~------ 121 (614)
T PRK10512 55 FIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA--IL---QL--TGNPMLTVALTKADRVDEAR------ 121 (614)
T ss_pred EEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH--HH---HH--cCCCeEEEEEECCccCCHHH------
Confidence 44444446665555556788999999999986 55555543 22 21 2355 689999999964311
Q ss_pred hCCCCCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 270 KNKQKPISFEQGEKLAKELK--AVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.....++..++....+ ..+++++||++|.|++++++.+.....
T Consensus 122 ----~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 122 ----IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred ----HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 1112345555555443 257999999999999999999876543
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=118.44 Aligned_cols=126 Identities=23% Similarity=0.298 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++||..+.|+..+.||++.. +...+.+++..+.+++||+++.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~----------------- 63 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP----------------- 63 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-----------------
Confidence 699999999999999999999999999999999744 46678889999999999988722110
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+.|++. ......+++++|++++|||... . .....+..|.
T Consensus 64 ----------------------------------~~~~~e~-~~~~~~~~~~ad~iilv~D~~~--~---~S~~~~~~~~ 103 (198)
T cd04142 64 ----------------------------------GTAGQEW-MDPRFRGLRNSRAFILVYDICS--P---DSFHYVKLLR 103 (198)
T ss_pred ----------------------------------ccchhHH-HHHHHhhhccCCEEEEEEECCC--H---HHHHHHHHHH
Confidence 1122221 1123456789999999998542 2 2223444555
Q ss_pred eeeecc---CCCcccccccceeeccCC
Q psy9997 163 WFISTE---HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~---~~~~~~~~~~g~~~~~~~ 186 (330)
..+... ..+..|+.++|||.|+..
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccc
Confidence 444332 256789999999999953
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=113.82 Aligned_cols=118 Identities=25% Similarity=0.366 Sum_probs=90.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+++|.++.|...+.+|+++.+.+.+.+++..+.+++||+++...+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------ 62 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF------------------ 62 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccc------------------
Confidence 48999999999999999999999999999999999888888899999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.+++++++++++|+.... .++ .....|.
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~vlv~~~~~~--~s~---~~~~~~~ 95 (168)
T cd04177 63 ------------------------------------------TAMRELYIKSGQGFLLVYSVTSE--ASL---NELGELR 95 (168)
T ss_pred ------------------------------------------hhhhHHHHhhCCEEEEEEECCCH--HHH---HHHHHHH
Confidence 34567789999999999974431 111 1223344
Q ss_pred eeeec-cCCCcccccccceeeccC
Q psy9997 163 WFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ......|+..+|||.|+.
T Consensus 96 ~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 96 EQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred HHHHHhhCCCCCCEEEEEEChhcc
Confidence 43332 234567888899999984
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=7e-14 Score=108.42 Aligned_cols=159 Identities=23% Similarity=0.273 Sum_probs=110.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
++.+++||.++|-.++|||+|++++..+.. ....||-|.+..+ +.. ...+.+.+||.+|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~-v~~-~g~f~LnvwDiGGq----------------- 72 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKK-VEY-DGTFHLNVWDIGGQ----------------- 72 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEE-Eee-cCcEEEEEEecCCc-----------------
Confidence 446789999999999999999999987652 3334444433322 222 34567777777777
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
...+..|..||++.|++|
T Consensus 73 --------------------------------------------------------------r~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 73 --------------------------------------------------------------RGIRPYWSNYYENVDGLI 90 (185)
T ss_pred --------------------------------------------------------------cccchhhhhhhhccceEE
Confidence 445566777888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH----HHHHhCCeeE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK----LAKELKAVKY 293 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~ 293 (330)
.|.|.+|...|+++.+.+.+.+... ...+|+.+.+||.|+..+.... +.+.. ..+.. .+.+
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-------------eia~klnl~~lrdR-swhI 156 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-------------EIALKLNLAGLRDR-SWHI 156 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-------------HHHHhcchhhhhhc-eEEe
Confidence 9999999999998885554444332 2689999999999998753211 11111 11111 2568
Q ss_pred EEEeeccCCCHHHHHHHHHH
Q psy9997 294 VECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~ 313 (330)
-++||..++|+..-.+++..
T Consensus 157 q~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred eeCccccccCccCcchhhhc
Confidence 89999999999887776654
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-13 Score=114.65 Aligned_cols=118 Identities=16% Similarity=0.254 Sum_probs=92.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.|...+.||++..+ .+.+.+++..+.+++||+++..++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------------- 65 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY----------------- 65 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-----------------
Confidence 57999999999999999999999999999999998655 668888999999999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+++.+++++++++++||.+. .. ....+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~~---s~~~~~~~ 97 (165)
T cd01868 66 -------------------------------------------RAITSAYYRGAVGALLVYDITK--KQ---TFENVERW 97 (165)
T ss_pred -------------------------------------------HHHHHHHHCCCCEEEEEEECcC--HH---HHHHHHHH
Confidence 3345667899999999998542 12 23455567
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........|+.++|+|.|+.
T Consensus 98 ~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 98 LKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred HHHHHHhCCCCCeEEEEEECcccc
Confidence 776655554568899999999985
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-13 Score=115.67 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH---HhhhCCC----C-----CcCHHH
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE---KLAKNKQ----K-----PISFEQ 280 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~---~~~~~~~----~-----~v~~~~ 280 (330)
.+|++++|.|+.....-... .++..+.. .+.|+++|.||+|+........ ++...-. . .-+.++
T Consensus 109 ~~D~~llVvda~~g~~~~d~--~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~ 184 (224)
T cd04165 109 APDYAMLVVAANAGIIGMTK--EHLGLALA--LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDD 184 (224)
T ss_pred CCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccc
Confidence 68999999998765432222 23433433 3689999999999865321111 0000000 0 000011
Q ss_pred HHHHHHHh---CCeeEEEEeeccCCCHHHHHHHHH
Q psy9997 281 GEKLAKEL---KAVKYVECSALTQKGLKNVFDEAI 312 (330)
Q Consensus 281 ~~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~ 312 (330)
+...+... ...++|.+||.+|.|++++...|.
T Consensus 185 ~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 185 VVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred eeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11111111 125899999999999999987764
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-15 Score=120.02 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=101.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+|++.+||+||||||++-||.++.|....++|++-.|.. +.+. +.+ -|+.|+|+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFre------Krvv----Y~s---------~gp~g~gr------- 63 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFRE------KRVV----YNS---------SGPGGGGR------- 63 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeeccccc------ceEE----Eec---------cCCCCCCc-------
Confidence 688999999999999999999999999999999755531 1111 111 25666664
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec--cccchhhhcccccccCCc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~--~~~~~~~~~~~~~~~~~~ 161 (330)
+..+.+++|||+|||+|++|+..|||+|=++++.|| +.+|+- ...+|
T Consensus 64 ------------------------~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFL-------nvrnW 112 (219)
T KOG0081|consen 64 ------------------------GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFL-------NVRNW 112 (219)
T ss_pred ------------------------ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHH-------HHHHH
Confidence 456789999999999999999999999999999996 333333 44566
Q ss_pred ceeeecc-CCCcccccccceeeccCCCcccc
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINPGWVRD 191 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 191 (330)
+.++..| .+....+.+.|+|.|+...+.++
T Consensus 113 lSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 113 LSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred HHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 7666665 56777899999999997655553
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=114.42 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=93.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 66 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF----------------- 66 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 68999999999999999999999999999999987555 567888999999999988762111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+...+++++|+++++||... . .....+..|
T Consensus 67 -------------------------------------------~~~~~~~~~~~d~il~v~d~~~--~---~s~~~~~~~ 98 (168)
T cd01866 67 -------------------------------------------RSITRSYYRGAAGALLVYDITR--R---ETFNHLTSW 98 (168)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCC--H---HHHHHHHHH
Confidence 2334567899999999998442 2 223456678
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++|+|.|+.
T Consensus 99 ~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 99 LEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHhCCCCCcEEEEEECcccc
Confidence 777766556788999999999985
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-13 Score=118.21 Aligned_cols=119 Identities=18% Similarity=0.312 Sum_probs=91.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|+.|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+++||+++...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~----------------- 68 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----------------- 68 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 58999999999999999999999999999999998665 567888999999999988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 69 -------------------------------------------~~~~~~~~~~ad~~vlv~D~~~~-----~s~~~l~~~ 100 (210)
T PLN03108 69 -------------------------------------------RSITRSYYRGAAGALLVYDITRR-----ETFNHLASW 100 (210)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCcH-----HHHHHHHHH
Confidence 23456678999999999985431 122344556
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+..+++|.|+..
T Consensus 101 ~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 101 LEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHhcCCCCcEEEEEECccCcc
Confidence 6555444456788999999999854
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-13 Score=116.64 Aligned_cols=117 Identities=19% Similarity=0.337 Sum_probs=89.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|..+.|.. .+.+|++..+ ...+.+++..+.+++||+++..++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 63 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF----------------- 63 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 699999999999999999999999964 6888988666 457788999999999998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 64 -------------------------------------------~~~~~~~~~~ad~~i~v~D~~~~-----~s~~~~~~~ 95 (191)
T cd04112 64 -------------------------------------------RSVTHAYYRDAHALLLLYDITNK-----ASFDNIRAW 95 (191)
T ss_pred -------------------------------------------HHhhHHHccCCCEEEEEEECCCH-----HHHHHHHHH
Confidence 22345678999999999984432 122334447
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........|+.++|||.|+.
T Consensus 96 ~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 96 LTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHHHHHhCCCCCcEEEEEEcccch
Confidence 666655555578899999999984
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-13 Score=113.68 Aligned_cols=117 Identities=16% Similarity=0.278 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC--CEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG--GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+. +..+.+++||+++..++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------- 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF---------------- 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH----------------
Confidence 5999999999999999999999999999999998666 5577777 88899999988862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|+++++++++||+.... . ....+..
T Consensus 65 --------------------------------------------~~~~~~~~~~~~~~v~v~d~~~~--~---s~~~l~~ 95 (162)
T cd04106 65 --------------------------------------------DAITKAYYRGAQACILVFSTTDR--E---SFEAIES 95 (162)
T ss_pred --------------------------------------------HHhHHHHhcCCCEEEEEEECCCH--H---HHHHHHH
Confidence 33456789999999999974421 1 2234455
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|...+.. ..+..|+.++++|.|+..
T Consensus 96 ~~~~~~~-~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 96 WKEKVEA-ECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHHHHH-hCCCCCEEEEEEChhccc
Confidence 6655432 235678999999999853
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-13 Score=112.83 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++..+.+++||+++...+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~------------------ 62 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF------------------ 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH------------------
Confidence 6999999999999999999999999999999997555 567888898999999988862111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+++++++++++||.... .....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~~ 95 (161)
T cd04113 63 ------------------------------------------RSVTRSYYRGAAGALLVYDITNR-----TSFEALPTWL 95 (161)
T ss_pred ------------------------------------------HHhHHHHhcCCCEEEEEEECCCH-----HHHHHHHHHH
Confidence 22345678899999999984431 1223455677
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
........+..|+.++|+|.|+.
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcc
Confidence 66665666788999999999985
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-13 Score=114.55 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=86.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|+.+.|..++.+|....+...+.+++..+.+++||+++....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------------- 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA-------------------- 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCccc--------------------
Confidence 799999999999999999999999999999998888888899999999999988872210
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+ .. . ...+++++|+++++||.... .+ ...+..|...
T Consensus 61 ---~------------------------------~~----~--~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~~~~ 96 (165)
T cd04146 61 ---D------------------------------TE----Q--LERSIRWADGFVLVYSITDR--SS---FDEISQLKQL 96 (165)
T ss_pred ---c------------------------------cc----h--HHHHHHhCCEEEEEEECCCH--HH---HHHHHHHHHH
Confidence 0 00 0 12367889999999984321 22 2334445544
Q ss_pred eeccC--CCcccccccceeeccC
Q psy9997 165 ISTEH--SPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~~--~~~~~~~~~g~~~~~~ 185 (330)
+.... .+..|+.++|+|.|+.
T Consensus 97 ~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 97 IREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred HHHHhcCCCCCCEEEEEECCchH
Confidence 43322 4578899999999984
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-13 Score=111.75 Aligned_cols=118 Identities=39% Similarity=0.684 Sum_probs=87.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
..||+++|++|||||||+.+|..+.|++.|.||+++.+...+.+++..+.+.+||+++...+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY------------------ 62 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhh------------------
Confidence 36999999999999999999999999999999999888778889999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+++++|+++++|+.... .++. .-...|.
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~i~v~~~~~~--~s~~--~~~~~~~ 96 (175)
T cd01870 63 ------------------------------------------DRLRPLSYPDTDVILMCFSIDSP--DSLE--NIPEKWT 96 (175)
T ss_pred ------------------------------------------hhccccccCCCCEEEEEEECCCH--HHHH--HHHHHHH
Confidence 22344568899999999974321 1111 1112343
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ..+..|+.++|+|.|+.
T Consensus 97 ~~~~~-~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 97 PEVKH-FCPNVPIILVGNKKDLR 118 (175)
T ss_pred HHHHh-hCCCCCEEEEeeChhcc
Confidence 33322 23567899999999984
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-13 Score=118.87 Aligned_cols=122 Identities=24% Similarity=0.307 Sum_probs=95.9
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|..+||+++|++|||||||+.+|..+.|...+.+|++..+ .......+..+++.+||+++..++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~--------------- 67 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY--------------- 67 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH---------------
Confidence 5679999999999999999999999999999999998777 445555566899999999983333
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+.+++.||+++++++++|+... .........
T Consensus 68 ---------------------------------------------~~~~~~y~~~~~~~l~~~d~~~----~~~~~~~~~ 98 (219)
T COG1100 68 ---------------------------------------------RSLRPEYYRGANGILIVYDSTL----RESSDELTE 98 (219)
T ss_pred ---------------------------------------------HHHHHHHhcCCCEEEEEEeccc----chhhhHHHH
Confidence 5678889999999999998654 122233455
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+........++.++|+|.|+..
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHHHHHHhCCCCceEEEEeccccccc
Confidence 666555554446788999999999853
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-13 Score=130.75 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=71.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+||++|+..|...+..+++.+|++++|+|+++....+... ++..+.. .++|.++|.||+|+......
T Consensus 70 inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~--~l~~a~~--~gip~IVviNKiD~~~a~~~------- 138 (607)
T PRK10218 70 INIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRF--VTKKAFA--YGLKPIVVINKVDRPGARPD------- 138 (607)
T ss_pred EEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHH--HHHHHHH--cCCCEEEEEECcCCCCCchh-------
Confidence 344555555767666677888999999999998753333222 2333322 37899999999999754211
Q ss_pred CCCCcCHHHHHHHHHHh------CCeeEEEEeeccCC----------CHHHHHHHHHHHhcCC
Q psy9997 272 KQKPISFEQGEKLAKEL------KAVKYVECSALTQK----------GLKNVFDEAILAALEP 318 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~------~~~~~~e~Sa~~~~----------~v~~~f~~l~~~i~~~ 318 (330)
-..++...+.... ..++++.+||++|. |+..+|+.++..+-.+
T Consensus 139 ----~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 139 ----WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ----HHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 1112232322111 12679999999998 5888888888777544
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-13 Score=124.41 Aligned_cols=160 Identities=23% Similarity=0.287 Sum_probs=112.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
-+|++++|.||+|||||+|.|.+.. .....+.|.-+.....+.++|.+ +.+.||+|.+....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d-------------- 280 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDD-------------- 280 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCcc--------------
Confidence 4899999999999999999999875 46667777777777788888765 56789999832111
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+....|.++-. ..+++||.++++
T Consensus 281 -----------------------------------------------------~VE~iGIeRs~----~~i~~ADlvL~v 303 (454)
T COG0486 281 -----------------------------------------------------VVERIGIERAK----KAIEEADLVLFV 303 (454)
T ss_pred -----------------------------------------------------HHHHHHHHHHH----HHHHhCCEEEEE
Confidence 11112223322 246789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+|.+.+.+-.+.. .+. ....+.|+++|.||.|+..... .+. . +.....+++.+||++
T Consensus 304 ~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~--------------~~~---~-~~~~~~~~i~iSa~t 360 (454)
T COG0486 304 LDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIE--------------LES---E-KLANGDAIISISAKT 360 (454)
T ss_pred EeCCCCCchhhHH--HHH---hcccCCCEEEEEechhcccccc--------------cch---h-hccCCCceEEEEecC
Confidence 9999874444433 222 2335799999999999987521 011 1 112224689999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++.+.+++...+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999988777554
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-13 Score=117.13 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=81.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||..+.|.. +.||++..+ .... ..+.+.+||+++...+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~------------------ 57 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQF------------------ 57 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccc------------------
Confidence 699999999999999999999999975 688887544 3222 4678899998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.+++.||++++++|+|||... ..+ ...+..|+
T Consensus 58 ------------------------------------------~~l~~~~~~~ad~~IlV~Dvt~--~~S---f~~l~~~~ 90 (220)
T cd04126 58 ------------------------------------------HGLGSMYCRGAAAVILTYDVSN--VQS---LEELEDRF 90 (220)
T ss_pred ------------------------------------------hhhHHHHhccCCEEEEEEECCC--HHH---HHHHHHHH
Confidence 3456678999999999998443 122 22344455
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.....+..++.++|||.|+.
T Consensus 91 ~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 91 LGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred HHHHHhcCCCCcEEEEEECcccc
Confidence 44444445667899999999984
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-13 Score=132.24 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=75.3
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+|||+|++.|......+++.+|++++|+|+++.. +.... .|+..+.. .++|+++|+||+|+.....
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~-~~l~~a~~--~~ip~IVviNKiD~~~a~~-------- 133 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTR-FVLKKALE--LGLKPIVVINKIDRPSARP-------- 133 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHH-HHHHHHHH--CCCCEEEEEECCCCCCcCH--------
Confidence 345666666777766677788999999999998632 22223 45555544 3789999999999965311
Q ss_pred CCCCcCHHHHHHHHHHhC------CeeEEEEeeccCC----------CHHHHHHHHHHHhcCCC
Q psy9997 272 KQKPISFEQGEKLAKELK------AVKYVECSALTQK----------GLKNVFDEAILAALEPP 319 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~----------~v~~~f~~l~~~i~~~~ 319 (330)
..+ .++...+....+ .++++.+||++|. |++.+|+.++..+-.+.
T Consensus 134 --~~v-~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 134 --DEV-VDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred --HHH-HHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 011 123333332111 2579999999996 79999999998876553
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-13 Score=119.93 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=46.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCC----------CCCceeec-ceEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSE----------YVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+++|++|+|||||++++++..+... ..+|.... +...+..++..+.+.+|||+|.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 58999999999999999999999876543 34555433 3446667788899999999997
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-13 Score=116.96 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=76.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhh--HHhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTL--EKLA 269 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~--~~~~ 269 (330)
+.+|||+|+..|......+++.+|++++|+|.++....... .+...+.. .++|+++|+||+|+....... .++.
T Consensus 66 i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~--~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~ 141 (237)
T cd04168 66 VNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTR--ILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIK 141 (237)
T ss_pred EEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHH
Confidence 45566666677766666778899999999999876543322 34444443 378999999999997543111 0110
Q ss_pred h-------------------------------------------CCCCCcCHHHHHHHHH----HhCCeeEEEEeeccCC
Q psy9997 270 K-------------------------------------------NKQKPISFEQGEKLAK----ELKAVKYVECSALTQK 302 (330)
Q Consensus 270 ~-------------------------------------------~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~ 302 (330)
. -....++.++..+-.+ ....+|++-.||.++.
T Consensus 142 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~ 221 (237)
T cd04168 142 EKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI 221 (237)
T ss_pred HHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc
Confidence 0 0012344444332221 2223678888999999
Q ss_pred CHHHHHHHHHHHh
Q psy9997 303 GLKNVFDEAILAA 315 (330)
Q Consensus 303 ~v~~~f~~l~~~i 315 (330)
|+..+++.+.+.+
T Consensus 222 Gv~~ll~~~~~~~ 234 (237)
T cd04168 222 GIEELLEGITKLF 234 (237)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999988764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-13 Score=116.26 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=67.1
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|++.|.......++.+|++++|+|+++...-+... ....+ ......|+|+|.||+|+.......
T Consensus 78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~~~~~-~~~~~~~iIvviNK~D~~~~~~~~----- 149 (208)
T cd04166 78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR--HSYIL-SLLGIRHVVVAVNKMDLVDYSEEV----- 149 (208)
T ss_pred eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH--HHHHH-HHcCCCcEEEEEEchhcccCCHHH-----
Confidence 4567899998887655555688999999999998753222211 11112 222235688899999996431100
Q ss_pred CCCCCcCHHHHHHHHHHhCC--eeEEEEeeccCCCHHHH
Q psy9997 271 NKQKPISFEQGEKLAKELKA--VKYVECSALTQKGLKNV 307 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~ 307 (330)
.....++.+.+.+.++. .+++.+||++|.|+++.
T Consensus 150 ---~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 ---FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred ---HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 00122455566666652 45899999999999753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-13 Score=109.40 Aligned_cols=119 Identities=18% Similarity=0.344 Sum_probs=91.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++||+++|++|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||+++..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~------------------- 61 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE------------------- 61 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH-------------------
Confidence 58999999999999999999999999888999998666 6788999999999999887611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++ ..++..+++++|+++++||... .........|
T Consensus 62 -----~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~-----~~s~~~~~~~ 95 (163)
T cd01860 62 -----RY------------------------------------RSLAPMYYRGAAAAIVVYDITS-----EESFEKAKSW 95 (163)
T ss_pred -----HH------------------------------------HHHHHHHhccCCEEEEEEECcC-----HHHHHHHHHH
Confidence 11 2234567899999999998442 1122344566
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+..+..+..++..+++|.|+..
T Consensus 96 ~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 96 VKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 6666555557788899999999853
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-13 Score=110.04 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=91.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+++||+++..+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------------------ 62 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF------------------ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH------------------
Confidence 6999999999999999999999999999999998655 567888999999999987762111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+...+++++|+++++||... ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~ilv~d~~~-----~~s~~~~~~~l 95 (164)
T smart00175 63 ------------------------------------------RSITSSYYRGAVGALLVYDITN-----RESFENLKNWL 95 (164)
T ss_pred ------------------------------------------HHHHHHHhCCCCEEEEEEECCC-----HHHHHHHHHHH
Confidence 2234567889999999998432 11223445577
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+..+..+..|+..+++|.|+..
T Consensus 96 ~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 96 KELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHhCCCCCeEEEEEEchhccc
Confidence 766665557899999999999854
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-13 Score=111.56 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=82.6
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeecc
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
|+++|++|||||||+.+|..+.|...+.||++..+ ..++...+.+.+||+++..++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~--------------------- 57 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNL--------------------- 57 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcch---------------------
Confidence 79999999999999999999999999999997543 345666788999988762221
Q ss_pred CCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee
Q psy9997 86 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI 165 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (330)
+.+++.||+++|++++|||.+... .+ .....|+..+
T Consensus 58 ---------------------------------------~~~~~~~~~~ad~ii~V~D~t~~~--s~---~~~~~~l~~~ 93 (164)
T cd04162 58 ---------------------------------------RKYWKRYLSGSQGLIFVVDSADSE--RL---PLARQELHQL 93 (164)
T ss_pred ---------------------------------------hHHHHHHHhhCCEEEEEEECCCHH--HH---HHHHHHHHHH
Confidence 345667899999999999855432 11 1223444433
Q ss_pred eccCCCcccccccceeeccCCC
Q psy9997 166 STEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 166 ~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
... .+..|+.++|||.|+...
T Consensus 94 ~~~-~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 94 LQH-PPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HhC-CCCCcEEEEEeCcCCcCC
Confidence 322 267889999999998643
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=98.97 Aligned_cols=72 Identities=32% Similarity=0.437 Sum_probs=51.9
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL 288 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 288 (330)
+++.++++++||+.+++++++.+ |...+.... .++|.++++||.|+..+ +.+..+++.
T Consensus 43 ~~~s~~~~~~v~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~~------ 101 (124)
T smart00010 43 SYESFDVVLQCWRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEGL------ 101 (124)
T ss_pred ccCCCCEEEEEEEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHHH------
Confidence 45567899999999999999765 666665443 56899999999998543 334433332
Q ss_pred CCeeEEEEeeccCCCHH
Q psy9997 289 KAVKYVECSALTQKGLK 305 (330)
Q Consensus 289 ~~~~~~e~Sa~~~~~v~ 305 (330)
.|+++||+++.|+.
T Consensus 102 ---~~~~~s~~~~~~~~ 115 (124)
T smart00010 102 ---EFAETSAKTPEEGE 115 (124)
T ss_pred ---HHHHHhCCCcchhh
Confidence 35567889999874
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-13 Score=108.61 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=88.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.++..+.|...+.++.+.. +.+.+.+++..+.+.+||+++..+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~------------------ 62 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF------------------ 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH------------------
Confidence 589999999999999999999999999999998744 4778888998899999988761111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+...+++.++++++|||... ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~ii~v~d~~~-----~~s~~~~~~~~ 95 (161)
T cd01861 63 ------------------------------------------RSLIPSYIRDSSVAVVVYDITN-----RQSFDNTDKWI 95 (161)
T ss_pred ------------------------------------------HHHHHHHhccCCEEEEEEECcC-----HHHHHHHHHHH
Confidence 2234567889999999998432 11223455666
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+........|+.++++|.|+.
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhcc
Confidence 66554444478899999999984
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=113.58 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=80.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
++++.+.+.+++++|++++|||++++. +|+.+. .|+..+.. .++|+++|+||+||... +.+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~------------~~~~~~ 88 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDD------------EDMEKE 88 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCC------------HHHHHH
Confidence 889999999999999999999999888 899987 89877654 58999999999999654 334445
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
++..+. +.+ .+++++||++|.|++++|+.+..
T Consensus 89 ~~~~~~-~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 89 QLDIYR-NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHH-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 555554 455 68999999999999999997754
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-13 Score=109.30 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=85.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC--CCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~--~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+||+++|++|||||||+.++..+ .|++++.+|++..+ .+.+.++ +..+.+.+||+++....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------------- 65 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY--------------- 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH---------------
Confidence 59999999999999999999865 79999999997554 5566665 67799999988862211
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..+...+++++|+++++||.+. ..+ ...+.
T Consensus 66 ---------------------------------------------~~~~~~~~~~~d~ii~v~d~~~--~~s---~~~~~ 95 (164)
T cd04101 66 ---------------------------------------------SDMVSNYWESPSVFILVYDVSN--KAS---FENCS 95 (164)
T ss_pred ---------------------------------------------HHHHHHHhCCCCEEEEEEECcC--HHH---HHHHH
Confidence 2234567889999999998432 111 23455
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+.... +..|+.++|+|.|+..
T Consensus 96 ~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 96 RWVNKVRTAS-KHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHHHHhC-CCCCEEEEEECccccc
Confidence 6665544432 5678899999999853
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-12 Score=112.82 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=85.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCC-CCCCCCcc-cceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVF-DNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|..+.|. ..+.+|++ +.+.+++.+++..+.+.+||+++..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------------------- 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------------------- 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------------------
Confidence 69999999999999999999999997 78888887 6668889999999999999988722
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCC-CCceEEEEeccccchhhhcccccccCC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYP-QTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
. |. ...+++ ++|++++|||.... .+ ...+..
T Consensus 62 -----~----------------------------~~----------~~~~~~~~ad~iilV~d~td~--~S---~~~~~~ 93 (221)
T cd04148 62 -----M----------------------------WT----------EDSCMQYQGDAFVVVYSVTDR--SS---FERASE 93 (221)
T ss_pred -----h----------------------------HH----------HhHHhhcCCCEEEEEEECCCH--HH---HHHHHH
Confidence 0 00 012345 89999999974432 12 223344
Q ss_pred cceeeecc-CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .....|+.++|||.|+..
T Consensus 94 ~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 94 LRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred HHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 55544332 235788999999999854
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-12 Score=124.16 Aligned_cols=165 Identities=22% Similarity=0.235 Sum_probs=111.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|...+++++|++|||||||.|++++.+...-+.|-+ -+.-.-.+...++. +++.|.||. .++.+..
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~---YSL~~~S-------- 67 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGT---YSLTAYS-------- 67 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCc---CCCCCCC--------
Confidence 346779999999999999999999987533333333 22222244444444 788999998 2222110
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc-cCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY-PQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~-~~~d~~i 218 (330)
+...-.+...+ .+.|+++
T Consensus 68 -------------------------------------------------------------~DE~Var~~ll~~~~D~iv 86 (653)
T COG0370 68 -------------------------------------------------------------EDEKVARDFLLEGKPDLIV 86 (653)
T ss_pred -------------------------------------------------------------chHHHHHHHHhcCCCCEEE
Confidence 11111112222 3569999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
-|.|.+|.+---.+.- ++.+ -+.|++++.|++|.... +.+. -+..++.+..| +|++++||
T Consensus 87 nVvDAtnLeRnLyltl----QLlE--~g~p~ilaLNm~D~A~~------------~Gi~-ID~~~L~~~LG-vPVv~tvA 146 (653)
T COG0370 87 NVVDATNLERNLYLTL----QLLE--LGIPMILALNMIDEAKK------------RGIR-IDIEKLSKLLG-VPVVPTVA 146 (653)
T ss_pred EEcccchHHHHHHHHH----HHHH--cCCCeEEEeccHhhHHh------------cCCc-ccHHHHHHHhC-CCEEEEEe
Confidence 9999998776555441 1222 27899999999999763 3333 34567888898 89999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+.|.|++++.+++.+....+.
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999887665444
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-12 Score=105.75 Aligned_cols=118 Identities=52% Similarity=0.824 Sum_probs=88.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.++..+.+...+.+|+.+.+......++..+.+++||+++....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~------------------- 61 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY------------------- 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc-------------------
Confidence 6999999999999999999999999999999998888888888999999999988762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++.+|+++++||.... .+ .......|+.
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~~--~s--~~~~~~~~~~ 96 (171)
T cd00157 62 -----------------------------------------DRLRPLSYPNTDVFLICFSVDSP--SS--FENVKTKWIP 96 (171)
T ss_pred -----------------------------------------cccchhhcCCCCEEEEEEECCCH--HH--HHHHHHHHHH
Confidence 12344567899999999984421 11 1122233444
Q ss_pred eeeccCCCcccccccceeeccCC
Q psy9997 164 FISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.... ..+..|+.++|+|.|+..
T Consensus 97 ~~~~-~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 97 EIRH-YCPNVPIILVGTKIDLRD 118 (171)
T ss_pred HHHh-hCCCCCEEEEEccHHhhh
Confidence 3333 234788999999999853
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-13 Score=110.48 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=81.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++..+. .+.. ..+.+++||+++..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~----------------- 66 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKI----------------- 66 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHH-----------------
Confidence 6899999999999999999999998885 47888875553 3333 4678999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.+++.||+++|++++|||.+... + ..+...|
T Consensus 67 -------------------------------------------~~~~~~~~~~a~~ii~v~D~t~~~--s---~~~~~~~ 98 (168)
T cd04149 67 -------------------------------------------RPLWRHYYTGTQGLIFVVDSADRD--R---IDEARQE 98 (168)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEeCCchh--h---HHHHHHH
Confidence 334567899999999999955421 1 1223344
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+..... ...+..|+.++|||.|+.
T Consensus 99 ~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 99 LHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred HHHHhcCHhhcCCcEEEEEECcCCc
Confidence 433332 223567899999999984
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-12 Score=110.32 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=88.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|+.+.|...+.+|+.+.+...+.+.+..+.+++||+++...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------------------- 60 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------------------- 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhh--------------------
Confidence 799999999999999999999999999999998777778888998899999988762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..+++++|++++|||.+. ......+..|+..
T Consensus 61 ----------------------------------------~~~~~~~~~~ad~vilv~d~~~-----~~s~~~~~~~~~~ 95 (198)
T cd04147 61 ----------------------------------------PAMRKLSIQNSDAFALVYAVDD-----PESFEEVERLREE 95 (198)
T ss_pred ----------------------------------------hHHHHHHhhcCCEEEEEEECCC-----HHHHHHHHHHHHH
Confidence 2235568899999999998443 1122234445444
Q ss_pred eecc-CCCcccccccceeeccCC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+... .....|+.+++||.|+..
T Consensus 96 i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 96 ILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHhcCCCCCcEEEEEEcccccc
Confidence 4332 235688999999999853
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-13 Score=111.21 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=81.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++.++. .+.. ..+.+++||+++..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~----------------- 74 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKI----------------- 74 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHH-----------------
Confidence 5789999999999999999999998886 57899875553 3333 4578899988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..||+++|++|+|||.+... .+ .+...|
T Consensus 75 -------------------------------------------~~~~~~~~~~a~~iI~V~D~s~~~--s~---~~~~~~ 106 (181)
T PLN00223 75 -------------------------------------------RPLWRHYFQNTQGLIFVVDSNDRD--RV---VEARDE 106 (181)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEeCCcHH--HH---HHHHHH
Confidence 446778999999999999955321 11 122223
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..... ...+..|+.++|||.|++.
T Consensus 107 l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 107 LHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred HHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 332222 2335788999999999853
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-12 Score=107.42 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=80.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||+.||..+.|. .+.||++..+. .+.. ..+.+.+||+++..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~----------------- 70 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKI----------------- 70 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhh-----------------
Confidence 5799999999999999999999988885 57889875553 2333 3577899988872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..||++++++++|||.+... . ......|
T Consensus 71 -------------------------------------------~~~~~~~~~~ad~ii~v~D~t~~~--s---~~~~~~~ 102 (175)
T smart00177 71 -------------------------------------------RPLWRHYYTNTQGLIFVVDSNDRD--R---IDEAREE 102 (175)
T ss_pred -------------------------------------------HHHHHHHhCCCCEEEEEEECCCHH--H---HHHHHHH
Confidence 345677899999999999855321 1 1122233
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..... ...+..|+.++|||.|+..
T Consensus 103 l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 103 LHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 333222 2235678999999999853
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-12 Score=108.59 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=63.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+.||+|...|.......+..+|++++|.|.+..-.-... ..+..+.. .++| +|+|.||+|+......
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~~~iIvviNK~D~~~~~~~------ 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQ--VGVPYIVVFLNKADMVDDEEL------ 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCcEEEEEeCCCCCCcHHH------
Confidence 35667777777765556667789999999999764222211 22333333 2566 8899999999643110
Q ss_pred CCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCH
Q psy9997 271 NKQKPISFEQGEKLAKELK----AVKYVECSALTQKGL 304 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v 304 (330)
.....+++.++..+.+ .++++.+||.+|.|.
T Consensus 137 ---~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 137 ---LELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ---HHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 1112345666666554 268999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-12 Score=104.61 Aligned_cols=118 Identities=24% Similarity=0.360 Sum_probs=87.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+++.+.+...+.+|....+ ...+.+.+..+.+.+||+++...+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------------ 62 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY------------------ 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH------------------
Confidence 6999999999999999999999999888888886555 567778888889999987761111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.+++++|+++++||..... ....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~-----s~~~~~~~~ 95 (162)
T cd04123 63 ------------------------------------------HALGPIYYRDADGAILVYDITDAD-----SFQKVKKWI 95 (162)
T ss_pred ------------------------------------------HHhhHHHhccCCEEEEEEECCCHH-----HHHHHHHHH
Confidence 234556788999999999843221 223344565
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+........|+..+++|.|+..
T Consensus 96 ~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 96 KELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 555444444778899999999853
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-12 Score=118.56 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=70.9
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEE-EEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.++||+|++.|.......+..+|++++|+|+.+...-+.. .++..+.. .++|.+ +|.||+|+......
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~------ 146 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKCDMVDDEEL------ 146 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEEEecCCcchHHH------
Confidence 35677888787765555667789999999999864322211 12223322 357755 68999999642110
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCC----------CHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQK----------GLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~----------~v~~~f~~l~~~i 315 (330)
.+...+++..+.+.++. .+++++||.+|. ++.++++.+...+
T Consensus 147 ---~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 147 ---LELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred ---HHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11223456667666542 679999999984 5777777776654
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-12 Score=118.56 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEE-EEEeccCCCCCchhhHH
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFL-LVGTQIDLREDAPTLEK 267 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~pii-lV~nK~Dl~~~~~~~~~ 267 (330)
+.+||++|++.|..........+|++++|+|++. +++.+.+. .+.. .++|.+ +|.||+|+......
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~-----~~~~--~gi~~iIvvvNK~Dl~~~~~~--- 146 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHIL-----LARQ--VGVPYIVVFLNKCDMVDDEEL--- 146 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-----HHHH--cCCCEEEEEEEecccCCHHHH---
Confidence 3467777777775544445668899999999987 33333332 2222 256654 78999999753110
Q ss_pred hhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCC
Q psy9997 268 LAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQK 302 (330)
Q Consensus 268 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~ 302 (330)
.+...+++.++.+.++. ++++++||.+|.
T Consensus 147 ------~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 147 ------LELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred ------HHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 01123456677776653 689999999885
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-12 Score=106.01 Aligned_cols=116 Identities=34% Similarity=0.578 Sum_probs=87.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
.||+++|++|||||||+.++..+.|..++.+|+.+.+...+.+++..+.+.+||+++....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------------------- 62 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY------------------- 62 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhc-------------------
Confidence 6999999999999999999999999999999998888878888999999999988762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-Ccc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG-GWF 162 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-~~~ 162 (330)
....+.+++++++++++|+... .. ....+. .|.
T Consensus 63 -----------------------------------------~~~~~~~~~~a~~~llv~~i~~--~~---s~~~~~~~~~ 96 (187)
T cd04129 63 -----------------------------------------ERLRPLSYSKAHVILIGFAVDT--PD---SLENVRTKWI 96 (187)
T ss_pred -----------------------------------------cccchhhcCCCCEEEEEEECCC--HH---HHHHHHHHHH
Confidence 1123346789999999997422 11 222332 455
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+..+ .+..|+.++|+|.|+.
T Consensus 97 ~~i~~~-~~~~piilvgnK~Dl~ 118 (187)
T cd04129 97 EEVRRY-CPNVPVILVGLKKDLR 118 (187)
T ss_pred HHHHHh-CCCCCEEEEeeChhhh
Confidence 555433 3468999999999984
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-12 Score=105.39 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=85.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++++.++.|...+.+|++..+ .+.+.+.+..+.+++||+++...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------------------- 61 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER------------------- 61 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------------------
Confidence 6999999999999999999999999999999987554 66788899999999998876111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+ ..++..+++++|+++++||.... .. ..+...|.
T Consensus 62 -----~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~~---~~~~~~~~ 95 (172)
T cd01862 62 -----F------------------------------------QSLGVAFYRGADCCVLVYDVTNP--KS---FESLDSWR 95 (172)
T ss_pred -----H------------------------------------HhHHHHHhcCCCEEEEEEECCCH--HH---HHHHHHHH
Confidence 0 22345678999999999974321 11 12233344
Q ss_pred eeeec----cCCCcccccccceeeccC
Q psy9997 163 WFIST----EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~----~~~~~~~~~~~g~~~~~~ 185 (330)
..... ......|+.++++|.|+.
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECcccc
Confidence 33222 123367888999999985
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-12 Score=107.22 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=78.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.|+..+.|. .+.||++.++. .+.. ..+.+.+||+++..++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~------------------- 57 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKI------------------- 57 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhH-------------------
Confidence 59999999999999999999999997 58899875553 3333 4677899988872111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+.++..||+++|++++|||.+... + ......|+.
T Consensus 58 -----------------------------------------~~~~~~~~~~ad~~i~v~D~~~~~--s---~~~~~~~~~ 91 (159)
T cd04150 58 -----------------------------------------RPLWRHYFQNTQGLIFVVDSNDRE--R---IGEAREELQ 91 (159)
T ss_pred -----------------------------------------HHHHHHHhcCCCEEEEEEeCCCHH--H---HHHHHHHHH
Confidence 334567899999999999865421 1 112223333
Q ss_pred eeec-cCCCcccccccceeeccC
Q psy9997 164 FIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
.+.. ......|+.++|||.|+.
T Consensus 92 ~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 92 RMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred HHHhcHHhcCCCEEEEEECCCCC
Confidence 2221 222457889999999985
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=113.53 Aligned_cols=108 Identities=22% Similarity=0.377 Sum_probs=75.4
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
.+.||||++.|..++.....-+|+++||.++++ |++.+.+. .....++|+++..||+|.....+......
T Consensus 58 tFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~-------hak~a~vP~iVAiNKiDk~~~np~~v~~e 130 (509)
T COG0532 58 TFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN-------HAKAAGVPIVVAINKIDKPEANPDKVKQE 130 (509)
T ss_pred EEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH-------HHHHCCCCEEEEEecccCCCCCHHHHHHH
Confidence 345666668899999999999999999999986 67777765 11225899999999999986543222111
Q ss_pred hCCCCCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 270 KNKQKPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
... ..+ .++.+ +...++++||++|+|+++++..++...
T Consensus 131 l~~-~gl-------~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 131 LQE-YGL-------VPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHH-cCC-------CHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 000 011 11122 236799999999999999999876544
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=112.66 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=49.5
Q ss_pred EEEeecCCCceeEEEEeeccCCCC------CCCCCceeecceEE----------------EEECC-ceeeeeeeecCCC-
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFP------SEYVPTVFDNYAVT----------------VMIGG-EPYTLGLFDTAGQ- 121 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~------~~~~~t~~~~~~~~----------------~~~~~-~~~~l~i~Dt~g~- 121 (330)
|.++|.+|||||||++++++..+. ..+.|++|..+... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999988742 23345554443211 00223 3467889999987
Q ss_pred ---ccccccCCCC---CCCCceEEEEec
Q psy9997 122 ---EDYDRLRPLS---YPQTDVFLVCFG 143 (330)
Q Consensus 122 ---~~~~~l~~~~---~~~~~~~i~v~~ 143 (330)
+.+..+...| +|+||+++.|+|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd 108 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVD 108 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEe
Confidence 3334444443 667777777665
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=116.29 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=71.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.++|++|++.|.......+..+|++++|+|++....-... .++..+.. .++| +|+|.||+|+......
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~--~g~~~~IvviNK~D~~~~~~~------ 146 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQ--VGVPYLVVFLNKVDLVDDEEL------ 146 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHH--cCCCEEEEEEEecCCcchHHH------
Confidence 45778888888765555566789999999999863221111 12222332 2677 6889999999643110
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCC--------CHHHHHHHHHHHhc
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQK--------GLKNVFDEAILAAL 316 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~--------~v~~~f~~l~~~i~ 316 (330)
.....++...+....+. .+++.+||.+|. +++++++.+...+-
T Consensus 147 ---~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 147 ---LELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred ---HHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 01122455666655542 579999999983 57788887776654
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-12 Score=107.70 Aligned_cols=118 Identities=16% Similarity=0.297 Sum_probs=83.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|+.+.+ ..+.+|++..+ ...+.+++..+.+.+||+++..++
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------------- 75 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF----------------- 75 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 68999999999999999999999988 46788887655 567788899999999998872221
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC-
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG- 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~- 160 (330)
..++..|++++|++++|||.... .++. .+..
T Consensus 76 -------------------------------------------~~~~~~~~~~~d~~vlv~D~~~~--~sf~---~~~~~ 107 (211)
T PLN03118 76 -------------------------------------------RTLTSSYYRNAQGIILVYDVTRR--ETFT---NLSDV 107 (211)
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH--HHHH---HHHHH
Confidence 33456689999999999985431 1111 2211
Q ss_pred cceeeecc-CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
|...+... .....++.++|+|.|+..
T Consensus 108 ~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 108 WGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 32222221 223457788999999853
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=101.94 Aligned_cols=117 Identities=19% Similarity=0.348 Sum_probs=86.4
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+||+++..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------------------- 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE-------------------- 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch--------------------
Confidence 6999999999999999999999999888999998666 4567788888999999887621
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
++ ..+...+++++|+++++||.+. ..++ .....|+
T Consensus 61 ----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~--~~s~---~~~~~~~ 95 (161)
T cd01863 61 ----RF------------------------------------RTLTSSYYRGAQGVILVYDVTR--RDTF---TNLETWL 95 (161)
T ss_pred ----hh------------------------------------hhhhHHHhCCCCEEEEEEECCC--HHHH---HhHHHHH
Confidence 11 2233456889999999998432 1111 2333465
Q ss_pred eeeecc-CCCcccccccceeeccC
Q psy9997 163 WFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..+..+ ..+..++.++|+|.|+.
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCccc
Confidence 555443 34667789999999984
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-12 Score=110.37 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=62.4
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhh---Hh---hhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
.+.+||++|+..|.......+..+|++++|.|+++... |. .....+ . +.......|+++|+||+|+......
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-L-LARTLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-H-HHHHcCCCeEEEEEEcccccccccc
Confidence 35567777776665544455678999999999988521 11 111011 1 1122234789999999999742100
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLK 305 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~ 305 (330)
... .....+++..+....+. ++++++||++|.|++
T Consensus 156 ~~~------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EER------YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHH------HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 000 00112233334444432 679999999999987
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-11 Score=103.11 Aligned_cols=116 Identities=13% Similarity=0.223 Sum_probs=80.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.||..+.|+..+.++ ...+.....+.+..+.+++||+++....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------- 60 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQD------------------- 60 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhh-------------------
Confidence 59999999999999999999999998775554 4455555667788899999988862111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCcc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGWF 162 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~~ 162 (330)
......+++.+|++++||+... .. ....+ ..|+
T Consensus 61 -----------------------------------------~~~~~~~~~~ad~~ilv~d~~~--~~---s~~~~~~~~~ 94 (166)
T cd01893 61 -----------------------------------------RANLAAEIRKANVICLVYSVDR--PS---TLERIRTKWL 94 (166)
T ss_pred -----------------------------------------hHHHhhhcccCCEEEEEEECCC--HH---HHHHHHHHHH
Confidence 1112335688999999997332 11 12222 2355
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+... .+..|+.++|||.|+..
T Consensus 95 ~~i~~~-~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 95 PLIRRL-GVKVPIILVGNKSDLRD 117 (166)
T ss_pred HHHHHh-CCCCCEEEEEEchhccc
Confidence 444332 34788999999999853
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=102.56 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=87.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc-ceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+.+.+.+|++. .....+.+++..+.+.+||+++...+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------------- 69 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF----------------- 69 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 489999999999999999999999999888899874 44667888999999999987761111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
...+..+++.+|+++++||.... .+ ...+..|
T Consensus 70 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 101 (169)
T cd04114 70 -------------------------------------------RSITQSYYRSANALILTYDITCE--ES---FRCLPEW 101 (169)
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEECcCH--HH---HHHHHHH
Confidence 22334578899999999985421 11 2233445
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+........+..++|||.|+..
T Consensus 102 ~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 102 LREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 5544444445677889999999853
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-11 Score=102.05 Aligned_cols=117 Identities=23% Similarity=0.308 Sum_probs=87.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+++++.|.+.+.+++.+.+.+...+++..+.+.+||+++....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------------- 61 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY------------------- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-------------------
Confidence 6999999999999999999999999999999999888888889999999999988762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++++++++++|+... ..+ ......|..
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~~s---~~~~~~~~~ 95 (164)
T cd04139 62 -----------------------------------------AAIRDNYHRSGEGFLLVFSITD--MES---FTATAEFRE 95 (164)
T ss_pred -----------------------------------------hHHHHHHhhcCCEEEEEEECCC--HHH---HHHHHHHHH
Confidence 2235567889999999997332 111 122233333
Q ss_pred eeecc-CCCcccccccceeeccC
Q psy9997 164 FISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..... .....|+..++||.|+.
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred HHHHhcCCCCCCEEEEEEccccc
Confidence 33222 23568889999999985
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=102.76 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=44.3
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+|||+|++.|......+++.+|++++|+|+++..+.+... .+..... .++|+++|+||+|+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEECCCcc
Confidence 34444444666666777788999999999999876655533 2222222 368999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-12 Score=107.08 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=78.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.++..+.|.. +.||++..+. .+.. ..+.+.+||+++..++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~------------------ 74 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKL------------------ 74 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhH------------------
Confidence 6899999999999999999999999965 7889875553 3333 4578899988862111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..||+++|++|+|||.+.. .++ .+...++
T Consensus 75 ------------------------------------------~~~~~~~~~~ad~iI~v~D~t~~--~s~---~~~~~~l 107 (182)
T PTZ00133 75 ------------------------------------------RPLWRHYYQNTNGLIFVVDSNDR--ERI---GDAREEL 107 (182)
T ss_pred ------------------------------------------HHHHHHHhcCCCEEEEEEeCCCH--HHH---HHHHHHH
Confidence 34567789999999999985432 111 1122232
Q ss_pred eeee-ccCCCcccccccceeeccC
Q psy9997 163 WFIS-TEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~-~~~~~~~~~~~~g~~~~~~ 185 (330)
.... .......|+.++|||.|+.
T Consensus 108 ~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 108 ERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred HHHHhCHhhcCCCEEEEEeCCCCC
Confidence 2221 1223456889999999985
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-11 Score=105.94 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=101.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
||+++|+.++||||+.+-...+.- +......+..... ...+ ....+.+++||.||+..+-.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~---------------- 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME---------------- 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH----------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccc----------------
Confidence 799999999999998766655432 1111112222211 1112 24566889999999832211
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
..+...+...++++.++|.|+|
T Consensus 64 ----------------------------------------------------------~~~~~~~~~if~~v~~LIyV~D 85 (232)
T PF04670_consen 64 ----------------------------------------------------------NYFNSQREEIFSNVGVLIYVFD 85 (232)
T ss_dssp ----------------------------------------------------------TTHTCCHHHHHCTESEEEEEEE
T ss_pred ----------------------------------------------------------ccccccHHHHHhccCEEEEEEE
Confidence 1123445567889999999999
Q ss_pred cCChhhHhhhh--hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC--CeeEEEEee
Q psy9997 223 VVSPSSFENVK--EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK--AVKYVECSA 298 (330)
Q Consensus 223 ~~~~~s~~~~~--~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa 298 (330)
+.+.+-.+++. ...+..+.+..+++.+-+..+|.|+..+....+.. ....+.....+...+ .+.++.+|-
T Consensus 86 ~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~------~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 86 AQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIF------RDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp TT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHH------HHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHH------HHHHHHHHHHhhhccccceEEEeccC
Confidence 98555444443 03345566667999999999999997653322211 111222333333332 256777776
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
-+ +.+.++|..+++.++.+.+..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHH
Confidence 65 799999999999999664443
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=108.34 Aligned_cols=164 Identities=21% Similarity=0.175 Sum_probs=105.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-..|.++|..|+|||||.|++++.... .+...+.=+.....+.+.+ ...+.+-||.|-
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGF-------------------- 250 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGF-------------------- 250 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccC--------------------
Confidence 357899999999999999999976532 2222222233344455543 233445577775
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
-++++.|+- +.|++.- .-...||.++.|.
T Consensus 251 -------------I~~LP~~LV-------------------------------------~AFksTL-EE~~~aDlllhVV 279 (411)
T COG2262 251 -------------IRDLPHPLV-------------------------------------EAFKSTL-EEVKEADLLLHVV 279 (411)
T ss_pred -------------cccCChHHH-------------------------------------HHHHHHH-HHhhcCCEEEEEe
Confidence 011222210 3333321 1345799999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|.++|...+.+. .-...+.+. ..++|+|+|.||+|+..+. . ......... ...+.+||++
T Consensus 280 DaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~------------~-----~~~~~~~~~-~~~v~iSA~~ 340 (411)
T COG2262 280 DASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDE------------E-----ILAELERGS-PNPVFISAKT 340 (411)
T ss_pred ecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCch------------h-----hhhhhhhcC-CCeEEEEecc
Confidence 999997777766 555555554 3579999999999987641 1 112222221 1489999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++.+++.|...+-.
T Consensus 341 ~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 341 GEGLDLLRERIIELLSG 357 (411)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999887763
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=104.20 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=81.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEE-CCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|.+||+++|++|||||||+.++..+.|... .||++... ...+.. ++..+.+++||+++..++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------------- 65 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL--------------- 65 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhH---------------
Confidence 689999999999999999999999998765 67776333 334444 446788999988862111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+.+++.+++++|++++|||.+.. .+ .....
T Consensus 66 ---------------------------------------------~~~~~~~~~~~d~ii~v~D~~~~--~~---~~~~~ 95 (183)
T cd04152 66 ---------------------------------------------RPLWKSYTRCTDGIVFVVDSVDV--ER---MEEAK 95 (183)
T ss_pred ---------------------------------------------HHHHHHHhccCCEEEEEEECCCH--HH---HHHHH
Confidence 33456789999999999985431 11 11222
Q ss_pred Ccceeeec-cCCCcccccccceeeccC
Q psy9997 160 GWFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.. ......|+.+++||.|+.
T Consensus 96 ~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 96 TELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred HHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 33332222 123457889999999984
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-11 Score=122.13 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
.+.+|||+|+..|......+++.+|++++|+|.++........ .| ..+.. .++|+++|+||+|+...
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~-~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VW-RQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHh--cCCCEEEEEECCCCCCC
Confidence 3455666666777666777888999999999999877666554 34 33333 37899999999999864
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-11 Score=106.98 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=45.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+||++|...+.......++.+|++++|+|.++........ .| ..+.. .+.|.++|+||+|+...
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~-~~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEK-LW-EFADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HH-HHHHH--cCCCEEEEEECCccCCC
Confidence 455677776766655666778899999999998765554333 23 23332 36899999999998764
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-12 Score=109.26 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=114.4
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.++++++|.+|+|||||+|+++++...+-..-..+.............-.+.+||+||.+.-..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~------------- 102 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD------------- 102 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchh-------------
Confidence 4567899999999999999999999765433221112222222111112225678889888732000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
.| ..+++....++...|.+++
T Consensus 103 ------------------------------------------~D-----------------~~~r~~~~d~l~~~DLvL~ 123 (296)
T COG3596 103 ------------------------------------------KD-----------------AEHRQLYRDYLPKLDLVLW 123 (296)
T ss_pred ------------------------------------------hh-----------------HHHHHHHHHHhhhccEEEE
Confidence 00 2255555667778898888
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh---hCCCCCcCHHHHHHHHHHhC-CeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA---KNKQKPISFEQGEKLAKELK-AVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~~~e 295 (330)
..+..|+.---+. .+++++....-+.|++++.|.+|.......+.... +..+++...+.+....+... -.|++.
T Consensus 124 l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~ 201 (296)
T COG3596 124 LIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVA 201 (296)
T ss_pred eccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 8888877654444 46666666666799999999999987643333111 11122233333333333221 247888
Q ss_pred EeeccCCCHHHHHHHHHHHhc
Q psy9997 296 CSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+|...++|++++..+++..+=
T Consensus 202 ~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 202 VSGRLPWGLKELVRALITALP 222 (296)
T ss_pred eccccCccHHHHHHHHHHhCc
Confidence 889999999999999998874
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-11 Score=101.23 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=78.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
+|+++|++|||||||+.++..+ |...+.||++.. ...+..+ .+.+++||+++..++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~-------------------- 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANF-------------------- 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHH--------------------
Confidence 5899999999999999999876 888999999754 3344443 577888987762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.++..||++++++++|||.+... ....+..|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~a~~ii~V~D~s~~~-----s~~~~~~~l~~ 91 (167)
T cd04161 57 ----------------------------------------RGIWVNYYAEAHGLVFVVDSSDDD-----RVQEVKEILRE 91 (167)
T ss_pred ----------------------------------------HHHHHHHHcCCCEEEEEEECCchh-----HHHHHHHHHHH
Confidence 334567899999999999855421 12223334443
Q ss_pred eecc-CCCcccccccceeeccCC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+ .....|+.+++||.|+..
T Consensus 92 l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 92 LLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred HHcCccccCCcEEEEEeCCCCcC
Confidence 3332 224678999999999854
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=110.12 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=64.3
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-----CCC-cEEEEEeccCCCCCchhhHH
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKT-PFLLVGTQIDLREDAPTLEK 267 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~-piilV~nK~Dl~~~~~~~~~ 267 (330)
+.|++|++.|.......+..+|++++|+|+++ ..|+... .|..+.+++. .++ ++|+|.||+|+....-....
T Consensus 89 liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~-~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~ 166 (447)
T PLN00043 89 VIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGI-SKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166 (447)
T ss_pred EEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cceeccc-CCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHH
Confidence 34444447776666677888999999999886 3344222 2322222221 356 57889999998621100000
Q ss_pred hhhCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHH
Q psy9997 268 LAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKN 306 (330)
Q Consensus 268 ~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 306 (330)
-....++++.++++.+ .++|+++||.+|+|+.+
T Consensus 167 ------~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 167 ------YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ------HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 0112456777777765 36799999999999853
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=103.12 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=66.6
Q ss_pred ccCCCEEEEEEEcCCh---hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSP---SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.|+..++|.|++.. ..++.++ .+..++..+. .+.|.++|+||+|+.+.. .+-..++
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~eae---------------~~~l~~L 335 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEAE---------------KNLLSSL 335 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhHH---------------HHHHHHH
Confidence 5578999999999988 8888887 5666666654 578999999999996431 1113556
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
++......++++||+.++|++++.+.+-+
T Consensus 336 ~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 336 AKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 66666444999999999999999987643
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-11 Score=101.57 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=77.9
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.|+..+.|.. +.||++..+. .+.. ..+.+.+||+++..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~-------------------- 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKL-------------------- 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhc--------------------
Confidence 79999999999999999999998864 8889875553 2333 4567888988762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.++..+++++|++++|||.+.. . .......|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~ad~ii~V~D~s~~--~---s~~~~~~~~~~ 91 (169)
T cd04158 57 ----------------------------------------RPLWKHYYLNTQAVVFVVDSSHR--D---RVSEAHSELAK 91 (169)
T ss_pred ----------------------------------------chHHHHHhccCCEEEEEEeCCcH--H---HHHHHHHHHHH
Confidence 23456688999999999985432 1 11233445544
Q ss_pred eecc-CCCcccccccceeeccC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+... .....|+.++|||.|+.
T Consensus 92 ~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 92 LLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred HhcChhhCCCCEEEEEeCcCcc
Confidence 4332 23457889999999984
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-11 Score=94.81 Aligned_cols=116 Identities=19% Similarity=0.247 Sum_probs=74.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
||+++|++|||||||+++|+.+.+. ..+.++-...+ .....+......+.+|+.++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------------- 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF----------------- 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH-----------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee-----------------
Confidence 8999999999999999999999987 12233334344 346677777777899976652111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
......++.++|++++|||.+. ..++....++..|
T Consensus 64 -------------------------------------------~~~~~~~~~~~d~~ilv~D~s~--~~s~~~~~~~~~~ 98 (119)
T PF08477_consen 64 -------------------------------------------YSQHQFFLKKADAVILVYDLSD--PESLEYLSQLLKW 98 (119)
T ss_dssp -------------------------------------------HCTSHHHHHHSCEEEEEEECCG--HHHHHHHHHHHHH
T ss_pred -------------------------------------------cccccchhhcCcEEEEEEcCCC--hHHHHHHHHHHHH
Confidence 1112223778999999998442 3344444455666
Q ss_pred ceeeeccCCCcccccccceeec
Q psy9997 162 FWFISTEHSPPMKLHTLGFITN 183 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~ 183 (330)
+..+... .+..|+.++|||.|
T Consensus 99 l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 99 LKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHH-SSCSEEEEEEE-TC
T ss_pred HHHHHcc-CCCCCEEEEEeccC
Confidence 6666553 34488999999875
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-11 Score=98.86 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=100.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
....|+++|.+|||||||+|.+++.+--.....|-|-.. ...+.+++. +.+.|.||.. |....
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYG-yAkv~------------ 86 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYG-YAKVP------------ 86 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcc-cccCC------------
Confidence 456899999999999999999999764333344444333 335555554 6788999971 11110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC---CCEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---TDVF 217 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---~d~~ 217 (330)
.... +.+......|++. -.++
T Consensus 87 -------k~~~-------------------------------------------------e~w~~~i~~YL~~R~~L~~v 110 (200)
T COG0218 87 -------KEVK-------------------------------------------------EKWKKLIEEYLEKRANLKGV 110 (200)
T ss_pred -------HHHH-------------------------------------------------HHHHHHHHHHHhhchhheEE
Confidence 0111 2233333333332 3477
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-HHHHHhCCee--EE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-KLAKELKAVK--YV 294 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~--~~ 294 (330)
+++.|+-.+-.-.+. +.++-+.+ .++|+++|+||+|...... +.-...... .+..... .. ++
T Consensus 111 vlliD~r~~~~~~D~--em~~~l~~--~~i~~~vv~tK~DKi~~~~----------~~k~l~~v~~~l~~~~~-~~~~~~ 175 (200)
T COG0218 111 VLLIDARHPPKDLDR--EMIEFLLE--LGIPVIVVLTKADKLKKSE----------RNKQLNKVAEELKKPPP-DDQWVV 175 (200)
T ss_pred EEEEECCCCCcHHHH--HHHHHHHH--cCCCeEEEEEccccCChhH----------HHHHHHHHHHHhcCCCC-ccceEE
Confidence 788887654444333 23333333 3899999999999987421 000011111 2211111 22 77
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
..|+..+.|++++...+...+.+
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEecccccCHHHHHHHHHHHhhc
Confidence 88999999999999988877644
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-11 Score=97.58 Aligned_cols=117 Identities=20% Similarity=0.332 Sum_probs=89.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.++..+.+...+.+|.+..+ ...+..++..+.+.+||+++....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------------ 62 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF------------------ 62 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHH------------------
Confidence 6899999999999999999999999999899987555 567788888899999988762110
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+...+++++|++++++|... ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~ii~v~d~~~-----~~~~~~~~~~~ 95 (159)
T cd00154 63 ------------------------------------------RSITPSYYRGAHGAILVYDITN-----RESFENLDKWL 95 (159)
T ss_pred ------------------------------------------HHHHHHHhcCCCEEEEEEECCC-----HHHHHHHHHHH
Confidence 2234557888999999998443 22233455577
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.....+..|+..+++|.|+.
T Consensus 96 ~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 96 KELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHhCCCCCcEEEEEEccccc
Confidence 76666655778889999999983
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-11 Score=104.74 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=45.4
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
.+.+|||+|++.|.......++.+|++++|+|.++....... .++..... .++|+++++||+|+...
T Consensus 72 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~--~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 72 VINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTR--KLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHH--HHHHHHHh--cCCCEEEEEECCccCCC
Confidence 345666666677665555567889999999999875432221 23333322 37899999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=108.63 Aligned_cols=165 Identities=23% Similarity=0.363 Sum_probs=132.2
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.+...++|+-|+|+.++|||+|++||+...|.... .+.+..|.+.+.+++....+-+.|.+|..
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~--------------- 88 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHP--------------- 88 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCc---------------
Confidence 45567899999999999999999999999886654 44577888999999999999888877741
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
...|...+|++
T Consensus 89 ---------------------------------------------------------------------~aQft~wvdav 99 (749)
T KOG0705|consen 89 ---------------------------------------------------------------------DAQFCQWVDAV 99 (749)
T ss_pred ---------------------------------------------------------------------hhhhhhhccce
Confidence 12234457999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
|+||.+.+..+|+.+. .+...+... ...+|+++||++.-.... ..+.+...+++.++.++..+.|++
T Consensus 100 Ifvf~~~d~~s~q~v~-~l~~~l~~~r~r~~i~l~lvgtqd~iS~~----------~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQ-ALAHEMSSYRNISDLPLILVGTQDHISAK----------RPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred EEEEEeccccCHHHHH-HHHhhcccccccccchHHhhcCcchhhcc----------cccccchHHHHHHHHhcCccceee
Confidence 9999999999999998 555444433 368999999998544332 237778888888888888789999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.+|.+++..|..+..+++..
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998888754
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-11 Score=98.41 Aligned_cols=116 Identities=26% Similarity=0.419 Sum_probs=85.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+++.+.+...+.++..+.+.....+++..+.+++||.++...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------------------- 60 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-------------------- 60 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------------------
Confidence 799999999999999999999999999999998777778888888899999987762110
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..+...+++++++++++|+... ..+...+..|...
T Consensus 61 ----------------------------------------~~~~~~~~~~~~~~i~v~d~~~-----~~s~~~~~~~~~~ 95 (160)
T cd00876 61 ----------------------------------------SAMRDLYIRQGDGFILVYSITD-----RESFEEIKGYREQ 95 (160)
T ss_pred ----------------------------------------HHHHHHHHhcCCEEEEEEECCC-----HHHHHHHHHHHHH
Confidence 2234456888999999997432 1122233344433
Q ss_pred eecc-CCCcccccccceeeccC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+... .....|+.++++|.|..
T Consensus 96 ~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 96 ILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred HHHhcCCCCCcEEEEEECCccc
Confidence 3332 22578889999999985
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-11 Score=100.01 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=85.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
.||+++|++|||||||+.+|..+.|...+.||+...+...+.+++..+.+.+||+++..++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------------- 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY------------------- 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhh-------------------
Confidence 6999999999999999999999999999999998888888888888888999987762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++.+++++++|+.... .....+..|+.
T Consensus 63 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~~~~ 96 (180)
T cd04137 63 -----------------------------------------SILPQKYSIGIHGYILVYSVTSR-----KSFEVVKVIYD 96 (180)
T ss_pred -----------------------------------------HHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHHHHH
Confidence 22344578889999999974431 11122333333
Q ss_pred eeecc-CCCcccccccceeeccC
Q psy9997 164 FISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
.+... .....|+.+++||.|+.
T Consensus 97 ~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 97 KILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HHHHhcCCCCCCEEEEEEchhhh
Confidence 33222 23456788999999985
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=112.79 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=44.9
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
+.+|||+|++.|.......++.+|++++|+|.++...-. .. .++..... .++|+++++||+|+....
T Consensus 81 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~-~l~~~~~~--~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 81 INLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TR-KLMEVCRL--RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred EEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HH-HHHHHHHh--cCCCEEEEEECCcccccC
Confidence 345666666766655555678899999999998753222 12 33333332 479999999999987643
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-11 Score=111.25 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+.|+||+..|.......+..+|++++|.|......-+... .+..+.. .++| +|+|.||+|+.......
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~--~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~----- 147 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKE--HILLAKQ--VGVPNIVVFLNKEDQVDDEELL----- 147 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH--HHHHHHH--cCCCEEEEEEEccCCCCHHHHH-----
Confidence 346677777776555555677899999999998643222221 2223332 3678 77899999997532111
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCC
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQKG 303 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~ 303 (330)
+...+++..+.+..+. .+++.+||.+|.|
T Consensus 148 ----~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 148 ----ELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred ----HHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 1123456666665442 6899999999974
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=111.60 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=75.2
Q ss_pred cccccccccccccc-----ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 190 RDRSLFDTAGQEDY-----DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 190 ~~~~~~D~~g~e~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
-.+.+.||||...- .......+..+|++++|.|.+...+..+. ..++.+.+...+.|+++|.||+|+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dr--- 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDR--- 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCc---
Confidence 45678999999652 11233468899999999999876555543 245555554334699999999998642
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHh----C--CeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKEL----K--AVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~----~--~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
..-..+....+.... + ...++.+||+.|.|++++++.+..
T Consensus 305 ---------eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 ---------NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 112234444443321 1 235899999999999999998876
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-11 Score=104.51 Aligned_cols=166 Identities=25% Similarity=0.251 Sum_probs=107.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC-CCCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.-++|.|.+|||||||++++++.+- ...|+-|. +....+ ++.....+|+.||||.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGh---fe~~~~R~QvIDTPGl-------------------- 225 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGH---FERGYLRIQVIDTPGL-------------------- 225 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEee---eecCCceEEEecCCcc--------------------
Confidence 4578999999999999999998763 33444333 333222 2234457899999997
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.+++....+.. |+..-..- -.=+++++++|
T Consensus 226 ------LDRPl~ErN~I------------------------------------------E~qAi~AL--~hl~~~IlF~~ 255 (346)
T COG1084 226 ------LDRPLEERNEI------------------------------------------ERQAILAL--RHLAGVILFLF 255 (346)
T ss_pred ------cCCChHHhcHH------------------------------------------HHHHHHHH--HHhcCeEEEEE
Confidence 12222211110 11111111 11257889999
Q ss_pred EcCChh--hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPS--SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~--s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|.+... +.+... .++.+++..+. .|+++|.||+|.... -..+++......-+......+|+.
T Consensus 256 D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~~--------------e~~~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 256 DPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIADE--------------EKLEEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred cCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccch--------------hHHHHHHHHHHhhccccccceeee
Confidence 988544 444544 67888888876 999999999999753 233444445555554557889999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
.+.+++.+-..+...+.+.
T Consensus 320 ~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 320 KGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ehhhHHHHHHHHHHHhhch
Confidence 9999998888887776654
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-11 Score=99.50 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.++..+.+ ..+.||++. ....+.++ .+.+.+||+++...+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~--~~~l~l~D~~G~~~~---------------- 71 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF-QIKTLEYE--GYKLNIWDVGGQKTL---------------- 71 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc-ceEEEEEC--CEEEEEEECCCCHHH----------------
Confidence 4578999999999999999999998754 567788862 23445555 467899988862211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.++..+++++|++++|||..... ++ .....
T Consensus 72 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~--s~---~~~~~ 102 (173)
T cd04154 72 --------------------------------------------RPYWRNYFESTDALIWVVDSSDRL--RL---DDCKR 102 (173)
T ss_pred --------------------------------------------HHHHHHHhCCCCEEEEEEECCCHH--HH---HHHHH
Confidence 223456789999999999855431 11 11222
Q ss_pred cceeeec-cCCCcccccccceeeccC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
|+..... ......|+..++||.|+.
T Consensus 103 ~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 103 ELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred HHHHHHhChhhcCCCEEEEEECcccc
Confidence 3322222 223568889999999985
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-10 Score=106.77 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=58.7
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.++||+|++.|.......+..+|++++|.|++....-.... .+. +.......|+|+|.||+|+.......
T Consensus 110 ~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~--l~~~lg~~~iIvvvNKiD~~~~~~~~------- 179 (474)
T PRK05124 110 IIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSF--IATLLGIKHLVVAVNKMDLVDYSEEV------- 179 (474)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHH--HHHHhCCCceEEEEEeeccccchhHH-------
Confidence 34555555666443444468899999999987542211111 111 11111235799999999997431100
Q ss_pred CCCcCHHHHHHHHHHhC---CeeEEEEeeccCCCHHHH
Q psy9997 273 QKPISFEQGEKLAKELK---AVKYVECSALTQKGLKNV 307 (330)
Q Consensus 273 ~~~v~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~~ 307 (330)
.....++...+....+ ..+++++||++|.|++++
T Consensus 180 -~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 -FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred -HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 0011123333344332 367999999999999764
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-11 Score=101.52 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=34.6
Q ss_pred cccCCCEEEEEEEcC-ChhhHhhhhhcchhhhhhc---CCCCcEEEEEeccCCCCC
Q psy9997 210 SYPQTDVFLVCFSVV-SPSSFENVKEKWVPEITHH---CQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~---~~~~piilV~nK~Dl~~~ 261 (330)
+..++.++|+|.|.+ .+....++.+.++..+... ...+|+++++||.|+..+
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 356789999999987 4667777773333333332 257999999999999875
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.8e-10 Score=104.83 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=58.5
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~ 273 (330)
++||+|++.|.......+..+|++++|+|.+....-+... .| ..+... ...++++|.||+|+.......
T Consensus 84 liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~-~~~~iivviNK~D~~~~~~~~-------- 152 (406)
T TIGR02034 84 VADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HS-YIASLL-GIRHVVLAVNKMDLVDYDEEV-------- 152 (406)
T ss_pred EEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHc-CCCcEEEEEEecccccchHHH--------
Confidence 4444444665444444677899999999987543222111 11 112221 234689999999997531100
Q ss_pred CCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHH
Q psy9997 274 KPISFEQGEKLAKELK--AVKYVECSALTQKGLKN 306 (330)
Q Consensus 274 ~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~ 306 (330)
-....++...+.+..+ ..+++++||++|.|+++
T Consensus 153 ~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 0011233344444443 24699999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-10 Score=100.22 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=116.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccc-------cccCCCCCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY-------DRLRPLSYPQ 134 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~l~~~~~~~ 134 (330)
-..++++|.++||||||++++++.+- ...|.-|.-...--- ...+...+|+.|+||.=.- ..-.-+-.|+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~--l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM--LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce--EeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 45789999999999999999998653 233332221111112 2345567899999973111 1223467899
Q ss_pred CceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccc--cccccccccc-cccccCccc
Q psy9997 135 TDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDR--SLFDTAGQED-YDRLRPLSY 211 (330)
Q Consensus 135 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~D~~g~e~-~~~~~~~~~ 211 (330)
||.+++|.|.......--.-.+++.+.. .......|...+...+. .+.++.- .+-+.. .+. ..-+...-+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~G-Irlnk~~p~V~I~kk~~-----gGI~i~~t~~l~~~d-~~~ir~iL~Ey~I 213 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVG-IRLNKRPPDVTIKKKES-----GGIRINGTGPLTHLD-EDTVRAILREYRI 213 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcC-eEecCCCCceEEEEecc-----CCEEEecccccccCC-HHHHHHHHHHhCc
Confidence 9999999986644321111111221111 00111112222211000 0000000 000000 011 112233335
Q ss_pred cCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 212 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 212 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
.+|+++|-. .-+.+++.+. +.....-+|.+.|.||+|+.. .+++..+.+..
T Consensus 214 ~nA~V~Ir~-----dvTlDd~id~----l~~nrvY~p~l~v~NKiD~~~-----------------~e~~~~l~~~~--- 264 (365)
T COG1163 214 HNADVLIRE-----DVTLDDLIDA----LEGNRVYKPALYVVNKIDLPG-----------------LEELERLARKP--- 264 (365)
T ss_pred ccceEEEec-----CCcHHHHHHH----HhhcceeeeeEEEEecccccC-----------------HHHHHHHHhcc---
Confidence 566665532 2344444322 222223589999999999964 35566666665
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.++.+||+.+.|++++.+.+.+.+
T Consensus 265 ~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 265 NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ceEEEecccCCCHHHHHHHHHHhh
Confidence 589999999999999999998877
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-10 Score=110.52 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=43.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+|||+|+..|.......++.+|++++|+|.++. ++...+.++..... .++|+++|+||+|+...
T Consensus 82 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 82 VNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred EEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 34566666666655555567889999999998864 22222134433332 47899999999998643
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-10 Score=107.07 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=67.1
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEE-EEEeccCCCCCchhhHHhhhC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.+.||+|+..|.......+..+|++++|.|.+....-+.. .++..+.. .++|.+ ++.||+|+.......
T Consensus 78 ~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~--~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~------ 147 (396)
T PRK00049 78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKCDMVDDEELL------ 147 (396)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHH--HHHHHHHH--cCCCEEEEEEeecCCcchHHHH------
Confidence 4567777777755555667899999999999864322222 22333332 267876 689999996421100
Q ss_pred CCCCcCHHHHHHHHHHhC----CeeEEEEeeccCC----------CHHHHHHHHHHHh
Q psy9997 272 KQKPISFEQGEKLAKELK----AVKYVECSALTQK----------GLKNVFDEAILAA 315 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~----------~v~~~f~~l~~~i 315 (330)
+...++...+....+ ..+++.+||.+|. ++.++++++...+
T Consensus 148 ---~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 148 ---ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ---HHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 111234444554433 2689999999875 4567777666543
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-11 Score=97.20 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=75.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC-CCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+|+++|++|||||||+.+|..+. +...+.||++-... . +....+.+.+||+++..++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~--~~~~~~~~~l~Dt~G~~~~------------------- 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-S--FEKGNLSFTAFDMSGQGKY------------------- 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-E--EEECCEEEEEEECCCCHhh-------------------
Confidence 58999999999999999999876 46778899874332 1 2234577889988762211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+.++..||++++++++|+|.+... .+ .....|+.
T Consensus 59 -----------------------------------------~~~~~~~~~~~d~ii~v~D~~~~~--~~---~~~~~~~~ 92 (162)
T cd04157 59 -----------------------------------------RGLWEHYYKNIQGIIFVIDSSDRL--RL---VVVKDELE 92 (162)
T ss_pred -----------------------------------------HHHHHHHHccCCEEEEEEeCCcHH--HH---HHHHHHHH
Confidence 334556889999999999855321 11 11122322
Q ss_pred eeecc---CCCcccccccceeeccCC
Q psy9997 164 FISTE---HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~---~~~~~~~~~~g~~~~~~~ 186 (330)
.+... .....|+.+++||.|+..
T Consensus 93 ~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 93 LLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred HHHcCcccccCCCCEEEEEeCccccC
Confidence 22111 235688999999999853
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-10 Score=86.91 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=63.9
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
...++|+++++-..++++|--. ..+.... ..|+|-|.+|.|+.++ -..+.+..|..+-|
T Consensus 61 t~~dadvi~~v~~and~~s~f~------p~f~~~~-~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaG 119 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFP------PGFLDIG-VKKVIGVVTKADLAED--------------ADISLVKRWLREAG 119 (148)
T ss_pred HhhccceeeeeecccCccccCC------ccccccc-ccceEEEEecccccch--------------HhHHHHHHHHHHcC
Confidence 4567899999999998876332 2233222 4569999999999854 24466778888889
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
+-++|++||.++.||+++++.+..
T Consensus 120 a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 120 AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred CcceEEEeccCcccHHHHHHHHHh
Confidence 999999999999999999998753
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=112.81 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=73.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|..++...+..+|++++|+|+++ +++++.+. .+.. .++|+++|+||+|+......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~-----~lk~--~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN-----ILRQ--YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH-----HHHH--cCCCEEEEEECCCCccccccccch
Confidence 5678888888888877778888999999999986 66666654 2222 26899999999999642110
Q ss_pred --hHHhhhCCCC-------------------CcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 265 --LEKLAKNKQK-------------------PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 265 --~~~~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..++....++ ....+.........+.++++++||++|+|+++++..+...
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0000000000 0000000001112344789999999999999999877543
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.3e-10 Score=104.05 Aligned_cols=109 Identities=23% Similarity=0.347 Sum_probs=76.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
..|.||||+..|..++.....-+|+++||....| +++.+.+.+ ....++|+|+..||+|....++-....
T Consensus 203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh-------Ak~A~VpiVvAinKiDkp~a~pekv~~ 275 (683)
T KOG1145|consen 203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH-------AKSANVPIVVAINKIDKPGANPEKVKR 275 (683)
T ss_pred EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH-------HHhcCCCEEEEEeccCCCCCCHHHHHH
Confidence 3466777779999999999999999999998876 566666651 122589999999999987653311100
Q ss_pred hhCCCCCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 269 AKNKQKPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.....+.. .+.+ |.++++++||++|.|++.+-++++..+
T Consensus 276 -------eL~~~gi~-~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 276 -------ELLSQGIV-VEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred -------HHHHcCcc-HHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 00001111 1222 447899999999999999999886654
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=89.45 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=58.7
Q ss_pred CCCEEEEEEEcC-ChhhHhhhhhcchhhhhhc---CCCCcEEEEEeccCCCCCchhhH-------Hhh-----hCCCCCc
Q psy9997 213 QTDVFLVCFSVV-SPSSFENVKEKWVPEITHH---CQKTPFLLVGTQIDLREDAPTLE-------KLA-----KNKQKPI 276 (330)
Q Consensus 213 ~~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~---~~~~piilV~nK~Dl~~~~~~~~-------~~~-----~~~~~~v 276 (330)
.+-++++|.|.. .+....++.+.++..+... ...+|+++++||.|+..+.+..- |+. ....+.+
T Consensus 108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~ 187 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSI 187 (238)
T ss_pred cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 577888888864 5666666763333333333 24789999999999987643211 000 0000111
Q ss_pred C----------HHHH--HHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 277 S----------FEQG--EKLAKEL-KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 277 ~----------~~~~--~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
. -.++ ..|+.-. ..+.|.|.|++.+ +++++-+++-+.
T Consensus 188 ~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 188 SDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1 1111 2233322 2367999999998 889888877554
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-10 Score=95.37 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=78.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|.. +.||++.++. .+.++ .+.+.+||+++...
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~------------------ 71 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQES------------------ 71 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHH------------------
Confidence 46899999999999999999999999875 6788876653 23333 57788898776211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ...+..+|+++|++++|+|.+... .+ .....|
T Consensus 72 ------~------------------------------------~~~~~~~~~~~d~vi~V~D~s~~~--~~---~~~~~~ 104 (174)
T cd04153 72 ------L------------------------------------RSSWNTYYTNTDAVILVIDSTDRE--RL---PLTKEE 104 (174)
T ss_pred ------H------------------------------------HHHHHHHhhcCCEEEEEEECCCHH--HH---HHHHHH
Confidence 1 233456789999999999854321 11 122223
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.. ......|+.+++||.|+.
T Consensus 105 l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 105 LYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred HHHHHhchhhcCCCEEEEEECCCCC
Confidence 333222 223567889999999985
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.6e-10 Score=104.03 Aligned_cols=162 Identities=25% Similarity=0.330 Sum_probs=113.4
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+.+.++|+.++|||.+++.|.++.+...+..+....|.. .+.+.+....+.+.|.... .
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~----------------- 485 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-D----------------- 485 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-c-----------------
Confidence 35799999999999999999999998877776666665543 4444455444444443321 0
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
...+...- ..||+++++
T Consensus 486 --------------------------------------------------------------~~~l~~ke-~~cDv~~~~ 502 (625)
T KOG1707|consen 486 --------------------------------------------------------------QDFLTSKE-AACDVACLV 502 (625)
T ss_pred --------------------------------------------------------------cccccCcc-ceeeeEEEe
Confidence 00000111 569999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||.+++.+|+.+. ..+. ........|+++|++|+|+.+.. ....... ..++++++..+-+..|+++
T Consensus 503 YDsS~p~sf~~~a-~v~~-~~~~~~~~Pc~~va~K~dlDe~~-----------Q~~~iqp-de~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 503 YDSSNPRSFEYLA-EVYN-KYFDLYKIPCLMVATKADLDEVP-----------QRYSIQP-DEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred cccCCchHHHHHH-HHHH-HhhhccCCceEEEeeccccchhh-----------hccCCCh-HHHHHhcCCCCCeeeccCC
Confidence 9999999999987 3322 22233689999999999997651 1122222 6799999876678888885
Q ss_pred CCCHHHHHHHHHHHhcCCC
Q psy9997 301 QKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~ 319 (330)
.-. .++|..|..++..+-
T Consensus 569 ~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCC-chHHHHHHHhhhCCC
Confidence 333 899999999998765
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-10 Score=107.37 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=63.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~ 269 (330)
.+.++|++|++.|-......+..+|++++|+|.++...-+.. .++..+.. .++| +|++.||+|+......
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~----- 215 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQ--VGVPNMVVFLNKQDQVDDEEL----- 215 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCeEEEEEecccccCHHHH-----
Confidence 345788888888866666667789999999998864332222 22223332 2677 7889999999653111
Q ss_pred hCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCC
Q psy9997 270 KNKQKPISFEQGEKLAKELK----AVKYVECSALTQKG 303 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~ 303 (330)
.+...++...+.+..+ ..+++.+||.+|.+
T Consensus 216 ----~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 216 ----LELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred ----HHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 1112235555655542 36899999998854
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=100.09 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=68.2
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
-.|+..-...+..|++++|+.|.+.----+.+. .++-.+. .+..+|.|.||+|+..+... .+ ..+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~a-nf~lAfe---~~L~iIpVlNKIDlp~adpe----------~V-~~q 200 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVA-NFYLAFE---AGLAIIPVLNKIDLPSADPE----------RV-ENQ 200 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHH-HHHHHHH---cCCeEEEeeeccCCCCCCHH----------HH-HHH
Confidence 444444455677899999999998644333443 2322232 37889999999999876321 11 112
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
...+..... ...+.+|||+|.|++++++++++.+=-++..
T Consensus 201 ~~~lF~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 201 LFELFDIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred HHHHhcCCc-cceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 222222222 3689999999999999999999988655443
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-10 Score=105.41 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=106.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..++|+++|.+|||||||+|.|..+.. ......|.-|.....++++|.++. +.||+|.+.-.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~--L~DTAGiRe~~-------------- 330 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVR--LSDTAGIREES-------------- 330 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEE--EEecccccccc--------------
Confidence 458999999999999999999998763 455566777777778888887655 57999982200
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
.......|.++- ...++.||.+++
T Consensus 331 ----------------------------------------------------~~~iE~~gI~rA----~k~~~~advi~~ 354 (531)
T KOG1191|consen 331 ----------------------------------------------------NDGIEALGIERA----RKRIERADVILL 354 (531)
T ss_pred ----------------------------------------------------CChhHHHhHHHH----HHHHhhcCEEEE
Confidence 000000111111 223567999999
Q ss_pred EEEcCChhhHhhhh-hcchhhhhhcC-------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH--hC
Q psy9997 220 CFSVVSPSSFENVK-EKWVPEITHHC-------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE--LK 289 (330)
Q Consensus 220 v~d~~~~~s~~~~~-~~~~~~i~~~~-------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~ 289 (330)
|+|.....+-+++. ...+....... ...|++++.||+|+...-. +... ....+... .+
T Consensus 355 vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~-----------~~~~-~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 355 VVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP-----------EMTK-IPVVYPSAEGRS 422 (531)
T ss_pred EecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc-----------cccC-CceeccccccCc
Confidence 99994332222222 02222222211 3579999999999976411 1111 00111111 11
Q ss_pred C-eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 290 A-VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 290 ~-~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
. ....++||++++|++++..++.......
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 1 2356699999999999999888777644
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-10 Score=103.86 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=50.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC-CCC-----CceeecceE-EE---------------EECC-ceeeeeeeecCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYV-----PTVFDNYAV-TV---------------MIGG-EPYTLGLFDTAG 120 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~-----~t~~~~~~~-~~---------------~~~~-~~~~l~i~Dt~g 120 (330)
+||.++|.+|||||||++++++..+.. +|+ |+.|..+.. .+ ..++ ....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877632 442 333332211 00 0111 236688999998
Q ss_pred C----ccccccCCCC---CCCCceEEEEec
Q psy9997 121 Q----EDYDRLRPLS---YPQTDVFLVCFG 143 (330)
Q Consensus 121 ~----~~~~~l~~~~---~~~~~~~i~v~~ 143 (330)
. .....+...| ++++|+++.|++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd 111 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVD 111 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEe
Confidence 4 2223344445 677777777776
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=104.32 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=63.3
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.+.||||++.|-......+..+|++++|.|.++...-+.. ..+..+.. .++| +|+|.||+|+.......
T Consensus 127 ~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~--~gip~iIvviNKiDlv~~~~~~------ 196 (447)
T PLN03127 127 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVVFLNKVDVVDDEELL------ 196 (447)
T ss_pred EEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEEEeeccCCHHHHH------
Confidence 4566666666654444455679999999998754322221 12222322 3678 57899999997531100
Q ss_pred CCCCcCHHHHHHHHHHhC----CeeEEEEeec---cCCC-------HHHHHHHHHHHhc
Q psy9997 272 KQKPISFEQGEKLAKELK----AVKYVECSAL---TQKG-------LKNVFDEAILAAL 316 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~---~~~~-------v~~~f~~l~~~i~ 316 (330)
+...++..++....+ .++++.+||. +|.| +.++++++...+-
T Consensus 197 ---~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 197 ---ELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred ---HHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 011123444444332 2678888775 4555 6777777665543
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=90.93 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=60.4
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCC---CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ---KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
....|++++|.++.+ -+-++. ..++.+.+.+. -.++++|.||.|......-.+-+ . -.....+.+.+.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~-----~-~~~~~l~~l~~~ 151 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYL-----E-NSCEALKRLLEK 151 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHH-----H-hccHHHHHHHHH
Confidence 467899999999876 332222 34555555432 36899999999987542111100 0 112455566666
Q ss_pred hCCeeEEEEe-----eccCCCHHHHHHHHHHHhcCC
Q psy9997 288 LKAVKYVECS-----ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 288 ~~~~~~~e~S-----a~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+ -.|+..+ +..+.+++++++.+-.++-++
T Consensus 152 c~-~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 152 CG-GRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred hC-CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 55 3554444 456788999999988887763
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-10 Score=87.57 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=35.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
||+++|.+|+|||||++++++.+. .....++........+..++..+ .++||||.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~ 57 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGI 57 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCC
Confidence 689999999999999999998643 22222222222223334444444 59999997
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=109.46 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=63.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.++||+|++.|.......+..+|++++|.|++....-+... ....+.. ....|+++|.||+|+.......
T Consensus 106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~-~~~~~iivvvNK~D~~~~~~~~------ 176 (632)
T PRK05506 106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASL-LGIRHVVLAVNKMDLVDYDQEV------ 176 (632)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHH-hCCCeEEEEEEecccccchhHH------
Confidence 457899998887655555678999999999997543222111 1111221 1236789999999996421100
Q ss_pred CCCCcCHHHHHHHHHHhCC--eeEEEEeeccCCCHHH
Q psy9997 272 KQKPISFEQGEKLAKELKA--VKYVECSALTQKGLKN 306 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~ 306 (330)
.....++...+.+..+. .+++.+||++|.|+++
T Consensus 177 --~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 --FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred --HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 00012333444444442 4699999999999874
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-09 Score=89.69 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=86.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCE-EEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
.++|++++||.|.|||+++.|++.++|...|.+|++......+-..+. .+++..|++++.+.+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~---------------- 72 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK---------------- 72 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceee----------------
Confidence 479999999999999999999999999999999999777766655433 599999999883322
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+| ++..||-.+.+++++||...+. ....+.+
T Consensus 73 --------------------------------------gg------lrdgyyI~~qcAiimFdVtsr~-----t~~n~~r 103 (216)
T KOG0096|consen 73 --------------------------------------GG------LRDGYYIQGQCAIIMFDVTSRF-----TYKNVPR 103 (216)
T ss_pred --------------------------------------cc------cccccEEecceeEEEeeeeehh-----hhhcchH
Confidence 11 1345777888999998855432 2233444
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|.-.+.. .+...|+++-|+|.|+.
T Consensus 104 whrd~~r-v~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 104 WHRDLVR-VRENIPIVLCGNKVDIK 127 (216)
T ss_pred HHHHHHH-HhcCCCeeeeccceecc
Confidence 4433322 23448899999999984
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-10 Score=99.22 Aligned_cols=125 Identities=16% Similarity=0.058 Sum_probs=73.2
Q ss_pred ccccccccccccccc---ccCcc---ccC--CCEEEEEEEcCChhhHhhhh-hcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDR---LRPLS---YPQ--TDVFLVCFSVVSPSSFENVK-EKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~---~~~~~---~~~--~d~~ilv~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
++.+||++|+.+... ....+ +.. ++++++++|.+......+.. ..|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 678999999977432 22222 222 88999999996543332222 1244433333358999999999999865
Q ss_pred chhhHHhhhCCC---------CCcC--HHHHHHH---HHHhC-CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 262 APTLEKLAKNKQ---------KPIS--FEQGEKL---AKELK-AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 262 ~~~~~~~~~~~~---------~~v~--~~~~~~~---~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
............ .... .+-.+++ .++.+ ..+++++||+++.|++++.+.+...+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 332111110000 0000 1111122 22333 24789999999999999999987765
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-10 Score=91.43 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=75.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|..+.+.. +.||++..+ ..+.. +..+.+.+||+++...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~-------------------- 57 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKM-------------------- 57 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEe-CCceEEEEEECCCCHhH--------------------
Confidence 68999999999999999999999864 467776433 23333 34577889987762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..+++++|++++|+|..... .......|+..
T Consensus 58 ----------------------------------------~~~~~~~~~~~~~iv~v~D~~~~~-----~~~~~~~~~~~ 92 (160)
T cd04156 58 ----------------------------------------RTVWKCYLENTDGLVYVVDSSDEA-----RLDESQKELKH 92 (160)
T ss_pred ----------------------------------------HHHHHHHhccCCEEEEEEECCcHH-----HHHHHHHHHHH
Confidence 223456788999999999855321 11222333333
Q ss_pred eecc-CCCcccccccceeeccC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+... .....|+.+++||.|+.
T Consensus 93 ~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 93 ILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred HHhchhhcCCCEEEEEECcccc
Confidence 3222 22568899999999984
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-09 Score=107.59 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=46.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+|||+|+..+.......++.+|++++|+|.++....+... ++..+.. .++|+++|+||+|+...
T Consensus 77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 445666666666555666788899999999998765554433 2233333 36899999999999864
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-10 Score=92.24 Aligned_cols=112 Identities=14% Similarity=0.101 Sum_probs=74.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.++..+.+. .+.||++.++. .+. ...+.+++||+++...+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~-------------------- 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSI-------------------- 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EEE--ECCEEEEEEECCCCHHH--------------------
Confidence 7999999999999999999988886 46788765543 233 34577899988862111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.++..++++++++++++|..... .+ .....|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~~~~ii~v~d~~~~~--~~---~~~~~~~~~ 91 (158)
T cd04151 57 ----------------------------------------RPYWRCYYSNTDAIIYVVDSTDRD--RL---GTAKEELHA 91 (158)
T ss_pred ----------------------------------------HHHHHHHhcCCCEEEEEEECCCHH--HH---HHHHHHHHH
Confidence 334567889999999999854321 11 011122221
Q ss_pred e-eccCCCcccccccceeeccC
Q psy9997 165 I-STEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~-~~~~~~~~~~~~~g~~~~~~ 185 (330)
. ........|+..++||.|+.
T Consensus 92 ~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 92 MLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred HHhchhhcCCcEEEEEeCCCCC
Confidence 1 11223467899999999985
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=95.40 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=65.0
Q ss_pred ccCCCEEEEEEEcCChh---hHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPS---SFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.+.+++.+.|++..+ -.++.. ....++..+. .+.|.++|+||+|+..+ .+...+....+
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~------------~e~~~~~~~~l 301 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLD------------EEELEELKKAL 301 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcC------------HHHHHHHHHHH
Confidence 45688999999998554 355555 5667777664 47999999999997654 22222334444
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+..+......+||.++.|++++...+...+-+.
T Consensus 302 ~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 302 AEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 4444422222299999999999999888777655
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-09 Score=92.74 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=36.6
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
..+.......++.+|++++|.|.++...-... ..+..+.. .++|++++.||+|+...
T Consensus 75 ~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 75 VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 33434445567789999999998764322221 23333333 36899999999999753
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=85.93 Aligned_cols=83 Identities=25% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH-hCCee
Q psy9997 214 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE-LKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~ 292 (330)
++.++.|+|+++.++... .+..++ ...-++|+||+|+... .....+...+..+. ....+
T Consensus 113 ~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~------------~~~~~~~~~~~~~~~~~~~~ 172 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPM------------VGADLGVMERDAKKMRGEKP 172 (199)
T ss_pred hCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccc------------ccccHHHHHHHHHHhCCCCC
Confidence 577999999987655321 111111 2234899999999743 11223333334443 22368
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 293 YVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
++++||++|.|++++|+.+.+..+
T Consensus 173 i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 173 FIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999987654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-09 Score=100.71 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=75.0
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
.+.+.|++|++.|-......+..+|++++|.|++... .-+... .+ . +.....-.|+|+|.||+|+......
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl-~-i~~~lgi~~iIVvlNKiDlv~~~~~----- 189 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HL-A-AVEIMKLKHIIILQNKIDLVKEAQA----- 189 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HH-H-HHHHcCCCcEEEEEecccccCHHHH-----
Confidence 3578999999998776666778999999999998631 111111 11 1 1222223579999999999753110
Q ss_pred hCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 270 KNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
....++...+.+.. ...+++.+||++|.|++++++.|...+-.+
T Consensus 190 -----~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 190 -----QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred -----HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 11123333333321 236899999999999999999988755433
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-09 Score=86.27 Aligned_cols=53 Identities=28% Similarity=0.248 Sum_probs=43.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.|+++|++|||||||++++..+.|...+.||++.++.. +..++ +.+.+||+++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g 53 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGG 53 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCC
Confidence 48999999999999999999999999999999766543 33333 7788998776
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-09 Score=91.19 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=76.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+..||+++|++|||||||+.++..+.+ ..+.||++... ..+.+++ ..+.+||+++....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~----------------- 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQA----------------- 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcce-EEEEECC--EEEEEEECCCCHHH-----------------
Confidence 478999999999999999999998887 46778876433 3455554 45677876651110
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..++++++++++|+|.... ..+ .....|
T Consensus 77 -------------------------------------------~~~~~~~~~~ad~iilV~D~~~~--~s~---~~~~~~ 108 (190)
T cd00879 77 -------------------------------------------RRLWKDYFPEVDGIVFLVDAADP--ERF---QESKEE 108 (190)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCcH--HHH---HHHHHH
Confidence 12345678899999999985532 111 122234
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.. ......|+.+++||.|+.
T Consensus 109 ~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 109 LDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred HHHHHcCccccCCCEEEEEeCCCCC
Confidence 433322 223567889999999984
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=96.94 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=56.7
Q ss_pred cccccccccccccCccccCCCEEEEEEEcCChh---hHh---hhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHH
Q psy9997 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFE---NVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEK 267 (330)
Q Consensus 195 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~ 267 (330)
.|+||++.|.......+..+|++++|.|.+... .|+ ...+.|. .+.. .++| +|++.||.|.....-....
T Consensus 90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~--~gi~~iiv~vNKmD~~~~~~~~~~ 166 (446)
T PTZ00141 90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT--LGVKQMIVCINKMDDKTVNYSQER 166 (446)
T ss_pred EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH--cCCCeEEEEEEccccccchhhHHH
Confidence 344444655555555677899999999987642 111 1111121 1211 2555 7799999995421000000
Q ss_pred hhhCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHH
Q psy9997 268 LAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKN 306 (330)
Q Consensus 268 ~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 306 (330)
-....++..++....+ .++++.+||.+|.|+.+
T Consensus 167 ------~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 167 ------YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ------HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 0112234444444433 26799999999999864
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-09 Score=86.68 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=72.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
+..+|.+|+..-+..+..++..+|+++..+|+-|.+-|.+.. .-++.+.... .++|+++.+||+|...+.
T Consensus 66 ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~-~eld~ll~~e~la~vp~lilgnKId~p~a~------- 137 (193)
T KOG0077|consen 66 FTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESK-KELDALLSDESLATVPFLILGNKIDIPYAA------- 137 (193)
T ss_pred EEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHH-HHHHHHHhHHHHhcCcceeecccccCCCcc-------
Confidence 444555666777888889999999999999999999999887 3333333322 589999999999998762
Q ss_pred hCCCCCcCHHHHH------HHHHHhC----------CeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 270 KNKQKPISFEQGE------KLAKELK----------AVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 270 ~~~~~~v~~~~~~------~~~~~~~----------~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
++++.+ ++....+ ....+-+|...+.+--+.|.++..
T Consensus 138 -------se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 138 -------SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred -------cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 222221 1111111 123677788888877777766543
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=90.81 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred CcEEEEEeccCCCCCchhhHHhhhCCC---CCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 247 TPFLLVGTQIDLREDAPTLEKLAKNKQ---KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 247 ~piilV~nK~Dl~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+|+++|.+|||...- ++.. .++. -..-....+.||-.+|+ ..+.+|+|...|++-++..|+++++-
T Consensus 223 i~vlVV~TK~D~~s~---leke-~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 223 IPVLVVCTKCDAVSV---LEKE-HEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CcEEEEEeccchhhH---hhhc-chhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence 799999999999532 0000 0000 11234557889999995 78889999999999999999999874
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-09 Score=86.43 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=72.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC------CCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTC 78 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~------f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTs 78 (330)
+|+++|++|||||||+.++.... +...+.+|++.++. .+.++ ...+.+||+++...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~-------------- 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESL-------------- 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhh--------------
Confidence 58999999999999999987532 24456777765553 34444 467788988762211
Q ss_pred EEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 79 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
..++..++++++++++|+|..... .....
T Consensus 64 ----------------------------------------------~~~~~~~~~~~~~~v~vvd~~~~~-----~~~~~ 92 (167)
T cd04160 64 ----------------------------------------------RSLWDKYYAECHAIIYVIDSTDRE-----RFEES 92 (167)
T ss_pred ----------------------------------------------HHHHHHHhCCCCEEEEEEECchHH-----HHHHH
Confidence 223445788999999999854321 11122
Q ss_pred CCcceeeec-cCCCcccccccceeeccC
Q psy9997 159 GGWFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..|+..... ......|+.+++||.|+.
T Consensus 93 ~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 93 KSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred HHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 233333222 223467888999999974
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=90.91 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=87.4
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCC--hhhHhhhhh-------cchhhhhh--cCCCCcEEEEEeccCC
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS--PSSFENVKE-------KWVPEITH--HCQKTPFLLVGTQIDL 258 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~--~~s~~~~~~-------~~~~~i~~--~~~~~piilV~nK~Dl 258 (330)
..+.++|++||...+.-|..++.+++++|+|.++++ ...+++-.. .++..+-. ++.++++||+.||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 345667777777778888889999999999988773 222222111 12222222 2368999999999999
Q ss_pred CCCchhhH---HhhhCCCCCcCHHHHHHHHHHh---------CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 259 REDAPTLE---KLAKNKQKPISFEQGEKLAKEL---------KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 259 ~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
..+.-... ..-++.+..-..+++..|.+.. ..+.+..+.|.+..+|+.+|.++...++..
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 87643222 2335555556677777666532 224577889999999999999999988754
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-09 Score=90.75 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-CCee
Q psy9997 214 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-KAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 292 (330)
.+..+.+.|+++.+... . .. ... ...|.++++||+|+... .....++..+..++. ...+
T Consensus 124 ~~~~i~Vvd~~~~d~~~--~-~~-~~~----~~~a~iiv~NK~Dl~~~------------~~~~~~~~~~~l~~~~~~~~ 183 (207)
T TIGR00073 124 EHMRVVLLSVTEGDDKP--L-KY-PGM----FKEADLIVINKADLAEA------------VGFDVEKMKADAKKINPEAE 183 (207)
T ss_pred cCeEEEEEecCcccchh--h-hh-HhH----HhhCCEEEEEHHHcccc------------chhhHHHHHHHHHHhCCCCC
Confidence 45566788887543211 1 01 111 24688999999999653 122233344444433 2368
Q ss_pred EEEEeeccCCCHHHHHHHHHHH
Q psy9997 293 YVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
++++||++|.|++++|+++.+.
T Consensus 184 i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 184 IILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-09 Score=105.56 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=48.3
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
.+.+|||+|+..+.......+..+|++++++|.+......... .| ..+.. .+.|+++|+||+|+...
T Consensus 61 ~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~-~~~~~--~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 61 KINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTET-VW-RQAEK--YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HH-HHHHH--cCCCEEEEEECCCCCCC
Confidence 3456677777766555666788999999999998876665543 23 33333 37899999999999754
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-09 Score=84.57 Aligned_cols=58 Identities=38% Similarity=0.535 Sum_probs=49.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
++||+++|++|+|||||++++..+.++.++.+++...+ ...+..++..+.+.+||+.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 59 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 59 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCC
Confidence 57999999999999999999999999888888887665 44577888778889998776
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-09 Score=85.92 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=74.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+++.+.+ ..+.+|++.... .+.++ .+.+.+||+++...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~-------------------- 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKI-------------------- 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhh--------------------
Confidence 799999999999999999998884 567777764432 23333 467889987762211
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..++++++++++|||..... .......|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~~~~~i~v~D~~~~~-----~~~~~~~~~~~ 91 (158)
T cd00878 57 ----------------------------------------RPLWKHYYENTNGIIFVVDSSDRE-----RIEEAKEELHK 91 (158)
T ss_pred ----------------------------------------HHHHHHHhccCCEEEEEEECCCHH-----HHHHHHHHHHH
Confidence 223456788999999999865421 11122233332
Q ss_pred eec-cCCCcccccccceeeccC
Q psy9997 165 IST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+.. ...+..|+.+++||.|+.
T Consensus 92 ~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 92 LLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred HHhCcccCCCcEEEEeeccCCc
Confidence 222 224577889999999984
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-09 Score=88.54 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=73.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|.+|||||||+.++..+.+. .+.||..... ..+.++ .+.+.+||+++....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~------------------ 74 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIG--NIKFTTFDLGGHQQA------------------ 74 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEEC--CEEEEEEECCCCHHH------------------
Confidence 689999999999999999999988774 4566764322 233333 356778877762111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..||++++++++|+|.+... .+ .....|+
T Consensus 75 ------------------------------------------~~~~~~~~~~ad~ii~vvD~~~~~--~~---~~~~~~l 107 (184)
T smart00178 75 ------------------------------------------RRLWKDYFPEVNGIVYLVDAYDKE--RF---AESKREL 107 (184)
T ss_pred ------------------------------------------HHHHHHHhCCCCEEEEEEECCcHH--HH---HHHHHHH
Confidence 234557899999999999864321 11 1122222
Q ss_pred eeeec-cCCCcccccccceeeccC
Q psy9997 163 WFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ......|+..++||.|++
T Consensus 108 ~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 108 DALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred HHHHcChhhcCCCEEEEEeCcccc
Confidence 22211 223467899999999985
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-08 Score=90.93 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+..+..|.+.+|+.|.+.----+.+. ..+-.+. .+.-+|-|.||+||..+.. ....++...-
T Consensus 94 SRSLAACEGalLvVDAsQGveAQTlA-N~YlAle---~~LeIiPViNKIDLP~Adp--------------ervk~eIe~~ 155 (603)
T COG0481 94 SRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPAADP--------------ERVKQEIEDI 155 (603)
T ss_pred hhhHhhCCCcEEEEECccchHHHHHH-HHHHHHH---cCcEEEEeeecccCCCCCH--------------HHHHHHHHHH
Confidence 34566899999999998765555554 3333333 3788999999999987522 1222333333
Q ss_pred hC--CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 288 LK--AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 288 ~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.| +...+.+|||+|.|+++++++++.++=.+...
T Consensus 156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred hCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 33 23478999999999999999999988666544
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=84.34 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=66.3
Q ss_pred cccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH
Q psy9997 203 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE 282 (330)
Q Consensus 203 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 282 (330)
+......+++++|++++|+|++++.. .|...+.....+.|+++|+||+|+... ....+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~-------------~~~~~~~~ 84 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPK-------------DKNLVRIK 84 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCC-------------CCCHHHHH
Confidence 46677778999999999999987542 344444333357899999999999643 12233333
Q ss_pred HHH-----HHhC--CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 283 KLA-----KELK--AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 283 ~~~-----~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+. +..+ ...++++||++|.|++++++.+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 333 2222 12589999999999999999998765
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=95.60 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=50.3
Q ss_pred CcEEEEEeccCCCCCchhhHHhhhCCCC--CcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 247 TPFLLVGTQIDLREDAPTLEKLAKNKQK--PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 247 ~piilV~nK~Dl~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+|++||++|+|.... ++......+. .+-..-.+.+|-+||+ ..+.+|++...|++.++..|.+++...+-.
T Consensus 197 ipi~VV~tksD~~~~---Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 197 IPIVVVCTKSDKIET---LEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred cceEEEEecccHHHH---HhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 799999999998652 1111111111 1233447788889985 778899999999999999999998865543
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-09 Score=82.61 Aligned_cols=58 Identities=29% Similarity=0.487 Sum_probs=53.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
++||-++||+.+|||||+-.|..+.+..++..|.+.++ .+++-+.+.++...+|+-.+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG 78 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG 78 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC
Confidence 68999999999999999999999999999999999777 77999999999999997665
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=94.99 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=37.5
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
..+.......++.+|++++|.|.++...-.... .+..+.. .+.|+|++.||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~--i~~~~~~--~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET--VWRQADK--YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 434334455677889999999988654333322 2333333 36899999999999854
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.4e-09 Score=105.32 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=41.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~ 260 (330)
+.+|||+|+..|.......++.+|++++|+|..+....+... .|. .+.. .+.|.++|.||+|...
T Consensus 88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~-~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLR-QALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHH-HHHH--cCCCEEEEEEChhccc
Confidence 344555555666555566788899999999987643322222 222 2211 3678899999999974
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-08 Score=88.11 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=73.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
.|+++|++|||||+|+.++..+.|...+.++............+....+.+||+++..++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------------------- 61 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-------------------- 61 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHH--------------------
Confidence 589999999999999999999998887766532221212222244566788887762221
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCC-ceEEEEeccccchhhhcccccccCCcce
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT-DVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+.....+|+++ +++++|+|..... ........|+.
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~~vV~VvD~~~~~----~~~~~~~~~l~ 97 (203)
T cd04105 62 ----------------------------------------RDKLLETLKNSAKGIVFVVDSATFQ----KNLKDVAEFLY 97 (203)
T ss_pred ----------------------------------------HHHHHHHHhccCCEEEEEEECccch----hHHHHHHHHHH
Confidence 12234467777 9999999865432 11122233333
Q ss_pred eeec---cCCCcccccccceeeccC
Q psy9997 164 FIST---EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~---~~~~~~~~~~~g~~~~~~ 185 (330)
.+.. ...+..|+.+++||.|+.
T Consensus 98 ~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 98 DILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred HHHHHHhhccCCCCEEEEecchhhc
Confidence 2211 223678889999999873
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=89.39 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=39.6
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
....++|+++|.+|+||||++|++++++. .+.+.++...........+ ...+.++||||.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL 96 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGL 96 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCC
Confidence 34578999999999999999999998763 2222221111111122233 457899999998
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-08 Score=87.96 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=66.0
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
.+.++|.+++|+|++++.++....+.|+..+.. .++|+++|+||+|+... .. ..++..++.+..+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~------------~~-~~~~~~~~~~~~g 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDD------------LE-EARELLALYRAIG 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCC------------HH-HHHHHHHHHHHCC
Confidence 468999999999999988777654478776654 47999999999999632 11 1223344455566
Q ss_pred CeeEEEEeeccCCCHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAI 312 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~ 312 (330)
.+++++||+++.|++++++.+.
T Consensus 142 -~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 142 -YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred -CeEEEEeCCCCccHHHHHhhcc
Confidence 6899999999999999998763
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-08 Score=95.37 Aligned_cols=132 Identities=22% Similarity=0.340 Sum_probs=84.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC------c
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED------A 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~------~ 262 (330)
+-+.||+|+|+|..++.....-||.+|||.|+. .+++.+.+. .++. .++|+|+..||+|..-. .
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~--rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM--RKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh--cCCCeEEeehhhhhhcccccCCCc
Confidence 457889999999999999999999999999997 466666654 2222 48999999999997532 1
Q ss_pred hhhHHhhhCCCCCc------CHHHHHHHHHHh-C------------CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC--
Q psy9997 263 PTLEKLAKNKQKPI------SFEQGEKLAKEL-K------------AVKYVECSALTQKGLKNVFDEAILAALEPPEP-- 321 (330)
Q Consensus 263 ~~~~~~~~~~~~~v------~~~~~~~~~~~~-~------------~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~-- 321 (330)
.....++....+.+ ......+|+++- + -+.++.+||.+|+|+.+++..|+.........
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11111111000000 011122333321 1 14578999999999999999888766544333
Q ss_pred --CCCCCcccC
Q psy9997 322 --PKKRKCVLL 330 (330)
Q Consensus 322 --~~~~~~~~~ 330 (330)
..+-.|.||
T Consensus 695 ~y~~ev~cTVl 705 (1064)
T KOG1144|consen 695 AYVDEVQCTVL 705 (1064)
T ss_pred hhhhheeeEEE
Confidence 244555554
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.7e-08 Score=89.37 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=72.6
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|..+...+++.++++++|+|+.+.. . .|.+++.+...+.|+++|+||+|+... .+..++
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~-s~~~~l~~~~~~~piilV~NK~DLl~k-------------~~~~~~ 111 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFE-----G-SLIPELKRFVGGNPVLLVGNKIDLLPK-------------SVNLSK 111 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCC-----C-CccHHHHHHhCCCCEEEEEEchhhCCC-------------CCCHHH
Confidence 677888888889999999999986544 2 677787777668899999999999642 233344
Q ss_pred HHH----HHHHhCCe--eEEEEeeccCCCHHHHHHHHHHH
Q psy9997 281 GEK----LAKELKAV--KYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 281 ~~~----~~~~~~~~--~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+.+ ++++++.. .++++||++|.|++++|+.+...
T Consensus 112 ~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 112 IKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 443 45555521 48999999999999999998654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-08 Score=83.13 Aligned_cols=45 Identities=33% Similarity=0.744 Sum_probs=26.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEEC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG 107 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~ 107 (330)
.+||+++|++|||||||+.||....|.+.|..|+|.++.. +++++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~ 54 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD 54 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec
Confidence 4566666666666666666666666666666666655532 44443
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-08 Score=92.07 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=66.6
Q ss_pred CEEEEEEEcCCh--hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH---HHHHHHHhC
Q psy9997 215 DVFLVCFSVVSP--SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ---GEKLAKELK 289 (330)
Q Consensus 215 d~~ilv~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~ 289 (330)
.+++.+-|++.. -|..... .++..|+..+.+.|.|+|.||+|+... ..++++. .+.+... +
T Consensus 249 aaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~------------edL~~~~~~ll~~~~~~-~ 314 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRP------------EDLDQKNQELLQTIIDD-G 314 (620)
T ss_pred hhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCc------------cccCHHHHHHHHHHHhc-c
Confidence 367777788754 4444444 678888888999999999999999876 2233222 3333333 4
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.++++++|+.+.+||-++-...+.+++..
T Consensus 315 ~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 315 NVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred CceEEEecccchhceeeHHHHHHHHHHHH
Confidence 48899999999999999999888888754
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-08 Score=81.64 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=95.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|..|+||||++.++..+.+. ...||++.+. ..+.+.+ +.+.+|+-.+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~-------------------- 68 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQ-------------------- 68 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSS--------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEecccc--------------------
Confidence 4789999999999999999999887654 4777876443 3445544 45677754431
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+ +++++.||++++++++|.|.+... +-......+..-
T Consensus 69 ----~~~------------------------------------~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~~~L~~l 107 (175)
T PF00025_consen 69 ----ESF------------------------------------RPLWKSYFQNADGIIFVVDSSDPE-RLQEAKEELKEL 107 (175)
T ss_dssp ----GGG------------------------------------GGGGGGGHTTESEEEEEEETTGGG-GHHHHHHHHHHH
T ss_pred ----ccc------------------------------------cccceeeccccceeEEEEecccce-eecccccchhhh
Confidence 111 567889999999999999866422 222222222221
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc-cCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY-PQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+. .......|+....||.|.+..... .++.+..+. ..+ ......++..++...+...+.- .|+.+
T Consensus 108 l~---~~~~~~~piLIl~NK~D~~~~~~~-~~i~~~l~l--------~~l~~~~~~~v~~~sa~~g~Gv~e~l-~WL~~ 173 (175)
T PF00025_consen 108 LN---DPELKDIPILILANKQDLPDAMSE-EEIKEYLGL--------EKLKNKRPWSVFSCSAKTGEGVDEGL-EWLIE 173 (175)
T ss_dssp HT---SGGGTTSEEEEEEESTTSTTSSTH-HHHHHHTTG--------GGTTSSSCEEEEEEBTTTTBTHHHHH-HHHHH
T ss_pred cc---hhhcccceEEEEeccccccCcchh-hHHHhhhhh--------hhcccCCceEEEeeeccCCcCHHHHH-HHHHh
Confidence 11 122246778888999887532211 111111111 112 2455666666777777777766 66643
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.1e-08 Score=85.62 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=39.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
...++|+++|.+|+|||||+|++++..... .+.++...........++ ..+.+|||||.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl 89 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGL 89 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCc
Confidence 346899999999999999999999876422 222222111111222333 56789999998
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-10 Score=98.52 Aligned_cols=122 Identities=19% Similarity=0.146 Sum_probs=60.7
Q ss_pred cccccccccccccccccCccc--------cCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSY--------PQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~--------~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+-++|||||.++...+.... ...-+++++.|.. ++..|-... ++.......-+.|.|.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~--L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSL--LLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHH--HHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHH--HHHHHHHhhCCCCEEEeeeccCcc
Confidence 567999999998654443332 3344667777765 445454432 222222222489999999999998
Q ss_pred CCchhhHHhhhCCCCCc--------CHHHHHHHHH---HhCCe-eEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 260 EDAPTLEKLAKNKQKPI--------SFEQGEKLAK---ELKAV-KYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 260 ~~~~~~~~~~~~~~~~v--------~~~~~~~~~~---~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+. ....++....... ...-.+++++ .++.. .++.+|+++++++++++..+-+++
T Consensus 170 ~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 733 1111100000000 1111222232 33445 799999999999999999876553
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=86.28 Aligned_cols=127 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh----------hhHhhhhhcchhhhhhc--CCCCcEEEEEeccCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----------SSFENVKEKWVPEITHH--CQKTPFLLVGTQIDL 258 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl 258 (330)
.+.+||++||...+..|..++.+++++++|.|+++- ..+++.. ..+..+... ..++|++|++||.|+
T Consensus 162 ~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl-~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 162 KFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL-NLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred EEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH-HHHHHHHhCccccCCCEEEEccChHH
Confidence 345566666677777777777778888888777752 2333333 222232222 268999999999998
Q ss_pred CCCchhhH---HhhhCCCC-CcCHHHHHHHHHHh---------CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 259 REDAPTLE---KLAKNKQK-PISFEQGEKLAKEL---------KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 259 ~~~~~~~~---~~~~~~~~-~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
..+.-... ..-++... ..+.+.+..|.... ..+....++|.+..++..+|..+...|+..
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 76432221 11122222 34566666665541 224567899999999999999998888753
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-07 Score=86.68 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=54.7
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhh---hhc-chhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCc
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEK-WVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPI 276 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~---~~~-~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v 276 (330)
..|-..+-..+.+||+.|||.|+.+.+.-.-. -|. -+..+.+...---+|++.||.|+.+-++.+= +.
T Consensus 96 rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf--------~e 167 (428)
T COG5256 96 RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF--------EE 167 (428)
T ss_pred HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH--------HH
Confidence 44444445567788999999998876421111 000 0111222222456899999999986311100 01
Q ss_pred CHHHHHHHHHHhCC----eeEEEEeeccCCCHHH
Q psy9997 277 SFEQGEKLAKELKA----VKYVECSALTQKGLKN 306 (330)
Q Consensus 277 ~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 306 (330)
-..+...+.+..|- ++|+.+||-.|.|+.+
T Consensus 168 i~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 168 IVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 11233345554442 5699999999999865
|
|
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.3e-08 Score=81.61 Aligned_cols=104 Identities=12% Similarity=0.229 Sum_probs=66.3
Q ss_pred ccccCccccCCCEEEEEEEcCChhhHhhhhhcc---hhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 204 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 204 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
.......+++.++.+.+||+...+-..++. .+ ++.+.++.+...+.+..+|.|+..... +....++
T Consensus 72 ~~q~d~iF~nV~vli~vFDves~e~~~D~~-~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~----------r~~if~~ 140 (295)
T KOG3886|consen 72 SSQEDNIFRNVQVLIYVFDVESREMEKDFH-YYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA----------RELIFQR 140 (295)
T ss_pred hhcchhhheeheeeeeeeeccchhhhhhHH-HHHHHHHHHHhcCCcceEEEEEeechhcccch----------HHHHHHH
Confidence 346667889999999999999876666554 33 455666778889999999999986422 2222222
Q ss_pred ----HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 ----GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ----~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+.+.+..+ +.++.+|- ..+.+-+++..+...++...+
T Consensus 141 r~~~l~~~s~~~~-~~~f~Tsi-wDetl~KAWS~iv~~lipn~~ 182 (295)
T KOG3886|consen 141 RKEDLRRLSRPLE-CKCFPTSI-WDETLYKAWSSIVYNLIPNVS 182 (295)
T ss_pred HHHHHHHhccccc-ccccccch-hhHHHHHHHHHHHHhhCCChH
Confidence 222222222 45666554 346666666666666665443
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-07 Score=87.28 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=68.6
Q ss_pred cccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
.+-+.+.+..+.++|.+++|+|++++. +...+. .|+..+. ..++|+++|+||+|+... .. .+
T Consensus 77 pR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~--~~~ip~ILVlNK~DLv~~------------~~--~~ 139 (352)
T PRK12289 77 PRKTELDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAE--STGLEIVLCLNKADLVSP------------TE--QQ 139 (352)
T ss_pred ccccceechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHH--HCCCCEEEEEEchhcCCh------------HH--HH
Confidence 445556666789999999999999876 343455 6776553 358999999999999643 11 11
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
......+.++ +.++.+||+++.|++++++.+...
T Consensus 140 ~~~~~~~~~g-~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 140 QWQDRLQQWG-YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHhcC-CeEEEEEcCCCCCHHHHhhhhccc
Confidence 2222334555 689999999999999999987543
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=78.17 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=40.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+.++....+. .+.+|.+.+. ..+..++ ..+.+||+++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G 67 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGG 67 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCC
Confidence 5789999999999999999999987664 4667765332 2344444 4567787665
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-08 Score=85.11 Aligned_cols=122 Identities=12% Similarity=0.013 Sum_probs=76.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHh--CCCCCCCC--CCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT--NKFPSEYV--PTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~--~~f~~~~~--~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
-+|+++|+++||||||+.+|+. +.|...+. +++.+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDS---------------------------------------- 42 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCccccccccc----------------------------------------
Confidence 4799999999999999999997 66655432 111000
Q ss_pred EEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 80 LISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
....++.+..+ .....++.....+.+|||+|+++|......+++++|++++|||...... ...
T Consensus 43 ----------~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~------~~~ 106 (194)
T cd01891 43 ----------NDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM------PQT 106 (194)
T ss_pred ----------chhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc------HHH
Confidence 00011111111 1223344456788999999999999999999999999999998654210 011
Q ss_pred CCcceeeeccCCCcccccccceeecc
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
..|+... .....|+.+++||.|+
T Consensus 107 ~~~~~~~---~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 107 RFVLKKA---LELGLKPIVVINKIDR 129 (194)
T ss_pred HHHHHHH---HHcCCCEEEEEECCCC
Confidence 1111111 1134567788999987
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-07 Score=83.94 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=66.9
Q ss_pred CccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
...+.++|.+++|+|++++. ++..+. .|+..+.. .++|+++|+||+|+..+ . .......+..
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~--~~ip~iIVlNK~DL~~~------------~--~~~~~~~~~~ 135 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEA--AGIEPVIVLTKADLLDD------------E--EEELELVEAL 135 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHH--cCCCEEEEEEHHHCCCh------------H--HHHHHHHHHH
Confidence 34588999999999999998 888887 78876654 47999999999999643 0 1112233334
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
..+ .+++.+||+++.|+++++..+..
T Consensus 136 ~~g-~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 ALG-YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred hCC-CeEEEEECCCCccHHHHHhhhcc
Confidence 455 68999999999999999887653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=88.19 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=38.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCc---------------eeeeeeeecCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQ 121 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~ 121 (330)
...++|.++|.+|||||||++++++.+. ..+|+.|..+...-.+.+.+. ...+.+.|+||.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 4567999999999999999999987653 234443332222222222211 234788888886
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-08 Score=80.20 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv 36 (330)
.||+++|++|||||||++||..+.+ .+.+|+
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~ 31 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEI--LYKKTQ 31 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCcc--ccccce
Confidence 3899999999999999999998766 345554
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-07 Score=80.86 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=83.1
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCC----hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
....++.|++|+|..-+..-....-.|+.+||.+.+. |++-+.+. -++. ..-..+|+|-||+|+......
T Consensus 85 ~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~--AleI----igik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 85 VRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM--ALEI----IGIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH--HHhh----hccceEEEEecccceecHHHH
Confidence 4467899999999876665555555699999999885 34444432 1111 124579999999999875332
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELK--AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
...+++..+|.+--. ..+++.+||..+.|++.+++++...+-.+.+.
T Consensus 159 ----------lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 159 ----------LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred ----------HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 235566667766321 25899999999999999999999888766554
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=76.83 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=62.0
Q ss_pred cccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 205 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 205 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
.+.....+++|++++|+|++++....+. .+...+. ..+.|+++|+||+|+... .. .+....+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~--~~~~p~iiv~NK~Dl~~~------------~~--~~~~~~~ 65 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVL--ELGKKLLIVLNKADLVPK------------EV--LEKWKSI 65 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHH--hCCCcEEEEEEhHHhCCH------------HH--HHHHHHH
Confidence 3445566789999999999876543332 1222222 136899999999999532 11 1111123
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.+..+ .+++.+||+++.|++++++.+...+-
T Consensus 66 ~~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 66 KESEG-IPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred HHhCC-CcEEEEEccccccHHHHHHHHHHHHh
Confidence 33444 57899999999999999999887663
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-07 Score=79.74 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=71.5
Q ss_pred hCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEE
Q psy9997 25 TNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT 103 (330)
Q Consensus 25 ~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~ 103 (330)
.+.|.++|.||++..+ .+.+.+++..+.+.+||++|..++
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~--------------------------------------- 42 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERF--------------------------------------- 42 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHh---------------------------------------
Confidence 3678899999998665 667899999999999999872222
Q ss_pred EEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeec
Q psy9997 104 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITN 183 (330)
Q Consensus 104 ~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 183 (330)
..+++.||++||++++|||.+. ..+ ...+..|+..+.....+..++.++|+|.|
T Consensus 43 ---------------------~~~~~~~~~~ad~~ilv~D~t~--~~s---f~~~~~w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 43 ---------------------RSLIPSYIRDSAAAIVVYDITN--RQS---FENTTKWIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred ---------------------hhccHHHhCCCcEEEEEEECCC--HHH---HHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 3456778999999999998443 111 22345566655444446778899999999
Q ss_pred cCC
Q psy9997 184 INP 186 (330)
Q Consensus 184 ~~~ 186 (330)
+..
T Consensus 97 L~~ 99 (176)
T PTZ00099 97 LGD 99 (176)
T ss_pred ccc
Confidence 854
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-07 Score=87.79 Aligned_cols=57 Identities=23% Similarity=0.174 Sum_probs=45.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCC--CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~--f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++++... +...+.+|..+.....+.+++.++ .+||+++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v--~l~DTaG 260 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILI--KLLDTAG 260 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEE--EEeeCCC
Confidence 35899999999999999999999864 456666666666667778877654 7999987
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.1e-08 Score=81.97 Aligned_cols=41 Identities=85% Similarity=1.463 Sum_probs=37.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
|+.+||+++|+.|||||||+.||..+.|.+.|.||+++.+.
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~ 41 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS 41 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE
Confidence 56789999999999999999999999999999999976653
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-07 Score=94.09 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=43.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+.||+|...|.......+..+|++++|.|......-+... .+..+.. .+.|.|++.||+|+..+
T Consensus 77 ~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~--~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 77 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQADK--YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 344566665655444455677899999999987654444333 2223333 36899999999999754
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-07 Score=80.71 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=57.3
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCC---CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ---KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
....+++++|...+ +-+-.+. ..+..+.+.+. -.-+|||.+..|...+....+-+ ..-..+..+.+.+.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l-----~~~~~~~l~~li~~ 152 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYL-----KKESNEALQELIEK 152 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHH-----HHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHH-----hccCchhHhHHhhh
Confidence 45678999999987 2222221 23333333332 23589999999887653211100 00012345667777
Q ss_pred hCCeeEEEEeec------cCCCHHHHHHHHHHHhcCCC
Q psy9997 288 LKAVKYVECSAL------TQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 288 ~~~~~~~e~Sa~------~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+. .|+....+ ....+.++++.+-.++.++.
T Consensus 153 c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 153 CGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 763 78777766 34568888888777776654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=83.49 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=67.2
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
...++|.+++||+++...++..+. .|+..+.. .++|.++|+||+|+..... + ...++.....+..+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~----------~-~~~~~~~~~y~~~g 182 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEG----------R-AFVNEQLDIYRNIG 182 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHH----------H-HHHHHHHHHHHhCC
Confidence 457899999999999889999988 78765543 4789999999999975310 0 01122223334555
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+++++||+++.|++++++.+...
T Consensus 183 -~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 183 -YRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred -CeEEEEeCCCCcCHHHHHHHHhhC
Confidence 689999999999999999988654
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-07 Score=76.75 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=85.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++++|++||--+.|||+++-++-.+++... .||++.+.- .+.+. .+.+.+||-.+.
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq-------------------- 71 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQ-------------------- 71 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCC--------------------
Confidence 578999999999999999999999888776 999975542 22222 677889975551
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ + +++++.||++.+++|+|.|+.... +-...+.++...
T Consensus 72 ----~k----~--------------------------------R~lW~~Y~~~t~~lIfVvDS~Dr~-Ri~eak~eL~~~ 110 (181)
T KOG0070|consen 72 ----EK----L--------------------------------RPLWKHYFQNTQGLIFVVDSSDRE-RIEEAKEELHRM 110 (181)
T ss_pred ----cc----c--------------------------------ccchhhhccCCcEEEEEEeCCcHH-HHHHHHHHHHHH
Confidence 11 1 778999999999999999866443 333355565555
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+.... ....|+...+||.|++
T Consensus 111 l~~~~---l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 111 LAEPE---LRNAPLLVFANKQDLP 131 (181)
T ss_pred HcCcc---cCCceEEEEechhhcc
Confidence 54443 5677888889999885
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-07 Score=83.97 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=34.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceee---cceEEEEECCceeeeeeeecCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD---NYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
..+++|+|+|++|+|||||+|.+.+-.-.++-....|. ....+.+.....-.+.+||.||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~ 96 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGI 96 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--G
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCC
Confidence 35689999999999999999999763322222222222 22223334444457889999987
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-07 Score=79.57 Aligned_cols=42 Identities=50% Similarity=0.828 Sum_probs=37.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 102 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~ 102 (330)
...+||+++|++|||||||++||..+.|...|.||++..+..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~ 44 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA 44 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEE
Confidence 457899999999999999999999999999999999876643
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.4e-07 Score=79.17 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=46.0
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcE-EEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-HHH-H
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-LAK-E 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~ 287 (330)
.+.+|.++++.|.+........ .++..+... +.|. ++|.||+|+........ .+ .++.+. +.. .
T Consensus 101 ak~aDvVllviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~--------~~-~~~l~~~~~~~~ 167 (225)
T cd01882 101 AKVADLVLLLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLR--------KT-KKRLKHRFWTEV 167 (225)
T ss_pred HHhcCEEEEEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHH--------HH-HHHHHHHHHHhh
Confidence 4678999999998754433332 234444332 4674 55999999974311110 11 122222 332 2
Q ss_pred hCCeeEEEEeeccCCCH
Q psy9997 288 LKAVKYVECSALTQKGL 304 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v 304 (330)
....+++.+||++...+
T Consensus 168 ~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 168 YQGAKLFYLSGIVHGRY 184 (225)
T ss_pred CCCCcEEEEeeccCCCC
Confidence 23357999999988543
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-07 Score=81.97 Aligned_cols=41 Identities=49% Similarity=0.892 Sum_probs=36.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT 103 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~ 103 (330)
++||+++|+.|||||||+++|..+.|.+.|.||++..|...
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~ 41 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTAS 41 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEE
Confidence 47999999999999999999999999999999998776543
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-07 Score=73.77 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
+|+++|++|||||||+.++..+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Confidence 799999999999999999998765
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=78.98 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCCEEEEEE-EcC----ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 213 QTDVFLVCF-SVV----SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 213 ~~d~~ilv~-d~~----~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
.+++.++|. |-+ .++.+....+.|..++++. ++|+++|.||.|-..+ .+.+.+..+.++
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~ek 207 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEK 207 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHH
Confidence 678888887 553 2345666555788888775 8999999999995432 133445567677
Q ss_pred hCCeeEEEEeeccC--CCHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQ--KGLKNVFDEA 311 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~--~~v~~~f~~l 311 (330)
++ .+++.+|+..= ..+..+++.+
T Consensus 208 y~-vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 208 YD-VPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred hC-CceEEEEHHHcCHHHHHHHHHHH
Confidence 77 68777777542 2344444443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-07 Score=78.28 Aligned_cols=38 Identities=76% Similarity=1.468 Sum_probs=35.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
+|++++|+.|||||||+.||..+.|..+|.||+++.+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~ 39 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS 39 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE
Confidence 69999999999999999999999999999999977664
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.4e-07 Score=78.46 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=36.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC--CCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE--YVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++|+++|++|||||||++++..+.+... +.+|+. .....+.+++. ..+.+||+++
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~i~Dt~G 98 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD-PTTRRLRLPDG-REVLLTDTVG 98 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc-ceeEEEEecCC-ceEEEeCCCc
Confidence 37999999999999999999998764322 334442 22233334332 2566777776
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.9e-07 Score=81.63 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=89.2
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCCh----------hhHhhhhhcchhhhhh--cCCCCcEEEEEecc
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----------SSFENVKEKWVPEITH--HCQKTPFLLVGTQI 256 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~i~~--~~~~~piilV~nK~ 256 (330)
.+.+.+||++||...+..|..++.+++++++|.|+++- ..+++.. ..+..+.. ...++|++|++||.
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl-~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL-NLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH-HHHHHHHcCccccCCcEEEEEecH
Confidence 45678999999999999999999999999999999862 2344444 23333332 23689999999999
Q ss_pred CCCCCchhhH---HhhhCCCCCcCHHHHHHHHHHh----------CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 257 DLREDAPTLE---KLAKNKQKPISFEQGEKLAKEL----------KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 257 Dl~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
|+..+.-... ..-++.....+.+.+..|.... ..+..+.++|.+..++..+|..+...|+.
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 9986432111 1112333334566666655431 12456788999999999999998887764
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.9e-07 Score=80.82 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=62.9
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
..++.+.||+|...-... ....+|.++++.+....+....+. ..+.+ ..-++|.||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E----~aDIiVVNKaDl~~~~~a---- 212 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK----KGIME----LADLIVINKADGDNKTAA---- 212 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH----hhhhh----hhheEEeehhcccchhHH----
Confidence 345678888887633222 466799999995533333333322 11222 234899999999754210
Q ss_pred hhCCCCCcCHHHHHHHHHHh------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 269 AKNKQKPISFEQGEKLAKEL------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.-...+........ ...+++.+||+++.|++++++.+.+.+
T Consensus 213 ------~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 213 ------RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred ------HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 01111222222210 115799999999999999999987754
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-07 Score=74.59 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=26.9
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeecc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
++|.++|||+|+++|+||| ....++...++.|+.++..+.+|...+.++|||.|+
T Consensus 68 ~slapMYyRgA~AAivvYD-----it~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL 122 (200)
T KOG0092|consen 68 HSLAPMYYRGANAAIVVYD-----ITDEESFEKAKNWVKELQRQASPNIVIALVGNKADL 122 (200)
T ss_pred cccccceecCCcEEEEEEe-----cccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhh
Confidence 4455555555555555554 222333334444555554444455555555555555
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-07 Score=77.59 Aligned_cols=38 Identities=100% Similarity=1.587 Sum_probs=34.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
+||+++|++|||||||+++|..+.|...|.||++..+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~ 39 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 39 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE
Confidence 69999999999999999999999999999999976554
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-07 Score=80.44 Aligned_cols=40 Identities=45% Similarity=0.767 Sum_probs=36.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
..+||+++|++|||||||+++|..+.|.+.|.||++..|.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~ 51 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 51 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE
Confidence 4689999999999999999999999999999999977664
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.4e-07 Score=71.51 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=75.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++++|+++|-.++|||+++.+|.... ++...||.+-..+ ++.-+.+++++||-.++..+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik---tl~~~~~~L~iwDvGGq~~l----------------- 73 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK---TLEYKGYTLNIWDVGGQKTL----------------- 73 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE---EEEecceEEEEEEcCCcchh-----------------
Confidence 47999999999999999999998766 5666777653332 23445677889964431111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++.+++||..+|+.|.|+|. .+.++--+...++..-
T Consensus 74 -------------------------------------------r~~W~nYfestdglIwvvDs-sD~~r~~e~~~~L~~l 109 (185)
T KOG0073|consen 74 -------------------------------------------RSYWKNYFESTDGLIWVVDS-SDRMRMQECKQELTEL 109 (185)
T ss_pred -------------------------------------------HHHHHHhhhccCeEEEEEEC-chHHHHHHHHHHHHHH
Confidence 66789999999999999996 3444444444444443
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+.+-. --..++....+|.|++
T Consensus 110 L~eer---laG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 110 LVEER---LAGAPLLVLANKQDLP 130 (185)
T ss_pred Hhhhh---hcCCceEEEEecCcCc
Confidence 33111 1124555666666664
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-07 Score=75.20 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=45.6
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 188 (330)
++++.+|||+|.++||||| ....+...++..|+.+..++..++..++++|||.|+...+
T Consensus 69 rsv~~syYr~a~GalLVyd-----it~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYD-----ITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHhccCcceEEEEE-----ccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 5667888888888888888 3333445688888888888888888888888888885433
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-07 Score=76.88 Aligned_cols=39 Identities=33% Similarity=0.646 Sum_probs=34.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
.+||+++|+.|||||||+++|..+.|...+.||++..+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~ 40 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK 40 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE
Confidence 479999999999999999999999999888898865553
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=9e-07 Score=73.20 Aligned_cols=71 Identities=8% Similarity=-0.156 Sum_probs=42.1
Q ss_pred eeeeeeecCCCc----cccccCCCCCC---CCceEEEEeccccchhhhcccccccCCcceeeeccC--CCccccccccee
Q psy9997 111 YTLGLFDTAGQE----DYDRLRPLSYP---QTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEH--SPPMKLHTLGFI 181 (330)
Q Consensus 111 ~~l~i~Dt~g~~----~~~~l~~~~~~---~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 181 (330)
..+.+|||||+. ....+...+++ .+|++++|+|..... .+...+..|...+.... ....|+.+++||
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~----~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 123 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD----DPVEDYKTIRNELELYNPELLEKPRIVVLNK 123 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC----CHHHHHHHHHHHHHHhCccccccccEEEEEc
Confidence 468899999963 22234444444 599999999855321 11223334443332221 235677889999
Q ss_pred eccC
Q psy9997 182 TNIN 185 (330)
Q Consensus 182 ~~~~ 185 (330)
.|+.
T Consensus 124 ~Dl~ 127 (170)
T cd01898 124 IDLL 127 (170)
T ss_pred hhcC
Confidence 9984
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-06 Score=71.80 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=30.5
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
..+.+|||||+++|......+++++|++++|+|..
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~ 85 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAAD 85 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECC
Confidence 36889999999999877778899999999999853
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.6e-07 Score=72.39 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=30.9
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeecc-CCCcccccccceeeccCCCc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~ 188 (330)
+.|+++|||+|.++|+|||.+.+ +....+.-|..++... ..++...+++|+|+|....+
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~R-----dtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R 133 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSR-----DTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER 133 (209)
T ss_pred hccCHhHhccCceeEEEEEccch-----hhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc
Confidence 55666666666666666663322 2223344555555553 23444456666666654333
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-07 Score=83.36 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=40.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+||+++|.++||||||+++++...+.. .+..|-.+...+.+.+.+. ..+.+|||+|
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G 246 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVG 246 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCc
Confidence 799999999999999999999876532 2322323555566666322 2567898887
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-07 Score=77.32 Aligned_cols=40 Identities=48% Similarity=0.755 Sum_probs=35.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
+.++||+++|++|||||||+++|..+.|...+.||++..+
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~ 42 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY 42 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE
Confidence 5679999999999999999999999999888888886554
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-06 Score=79.53 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=22.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+++.++|.+|+|||||.+++++.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999876
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.1e-06 Score=67.38 Aligned_cols=55 Identities=31% Similarity=0.336 Sum_probs=37.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+||+++|++|+||||+++++....+ ...+.++..+........++ ..+.+||+++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG 58 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAG 58 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCC
Confidence 6899999999999999999997764 23334443343344444443 3467787776
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-06 Score=68.78 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=58.2
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
.++++|.+++|.|+.++..-.+. .+...+.....+.|+++|.||+|+... .. ..+....+.+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~--~i~~~l~~~~~~~p~ilVlNKiDl~~~------------~~-~~~~~~~~~~~~~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCK--HVEEYLKKEKPHKHLIFVLNKCDLVPT------------WV-TARWVKILSKEYP 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCH--HHHHHHHhccCCCCEEEEEEchhcCCH------------HH-HHHHHHHHhcCCc
Confidence 35689999999999987433221 233333333345899999999999643 11 1122333333322
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
...+.+||+.+.|++++.+.+...+
T Consensus 70 -~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 70 -TIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred -EEEEEeeccccccHHHHHHHHHHHH
Confidence 2357899999999999999886543
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-07 Score=70.67 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=84.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.++.+.++|-..+|||++++..+.+.|.....||++.+..+ +....+.+.+||-.+.+++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rf----------------- 78 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRF----------------- 78 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccH-----------------
Confidence 46789999999999999999999999999999999876652 3344566778876652222
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++++..|||+.++++.+.|... ..+-...+.+++..
T Consensus 79 -------------------------------------------rsmWerycR~v~aivY~VDaad-~~k~~~sr~EL~~L 114 (186)
T KOG0075|consen 79 -------------------------------------------RSMWERYCRGVSAIVYVVDAAD-PDKLEASRSELHDL 114 (186)
T ss_pred -------------------------------------------HHHHHHHhhcCcEEEEEeecCC-cccchhhHHHHHHH
Confidence 6678889999999999988654 22223333344333
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+. ...-...|....|+|.|++
T Consensus 115 L~---k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 115 LD---KPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred hc---chhhcCCcEEEecccccCc
Confidence 22 2233456777889999986
|
|
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-07 Score=76.24 Aligned_cols=45 Identities=31% Similarity=0.614 Sum_probs=38.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG 107 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~ 107 (330)
.+||+++|++|||||||+++|...+|...|..|+|..+. +.+.++
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd 54 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD 54 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc
Confidence 489999999999999999999999999999999987774 466665
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.1e-07 Score=76.11 Aligned_cols=38 Identities=32% Similarity=0.666 Sum_probs=34.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
+|++++|++|||||||++||..+.|.+.|.||++..+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~ 38 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFM 38 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE
Confidence 58999999999999999999999999999999876553
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=87.75 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+.||+|+..|.......++.+|++++|.|+...-...... .|.. +.. .++|+|++.||+|..
T Consensus 101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~-~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHH-HHH--CCCCEEEEEECCccc
Confidence 34555555776665666678899999999998664444433 2332 222 378999999999997
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-06 Score=69.69 Aligned_cols=53 Identities=38% Similarity=0.557 Sum_probs=42.5
Q ss_pred EEcCCCCChhHHHHHHHhCCC-CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 8 VVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f-~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
++|.+|+|||||++++..... ...+.+|..+.+............+.+|++.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g 54 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAG 54 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCC
Confidence 589999999999999998887 66777777555566667777788888887765
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=7e-07 Score=74.24 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=95.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+|++++|++|||||||++||.++.|. ..|.||++..+. ..+.+++..+.+.+||++|++.+..++..||+++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4589999999999999999999999998 899999988875 47888898899999999999999999999999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+|||.+.. .++ ..+..|+..... ....|+..++||.|+.
T Consensus 83 lv~d~~~~--~s~---~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 83 LVYDSSDP--KSF---SYCAEVYKKYFM--LGEIPCLFVAAKADLD 121 (169)
T ss_pred EEEeCCCH--HHH---HHHHHHHHHhcc--CCCCeEEEEEEccccc
Confidence 99985432 111 223344432211 2357899999999985
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-06 Score=73.20 Aligned_cols=48 Identities=29% Similarity=0.650 Sum_probs=40.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGG 108 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~ 108 (330)
..-+|++++|+++|||||++.||..+.|...+..|+|..|. +++.+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g 58 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG 58 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC
Confidence 34689999999999999999999999999999999988884 4777765
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.9e-06 Score=73.35 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=76.3
Q ss_pred CCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 185 ~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
+.+.++.+.+.|++|+...-...--...-.|..++|.|+....--+......+-++. ....++|.||+|+..+..
T Consensus 65 pq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~q- 139 (522)
T KOG0461|consen 65 PQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQ- 139 (522)
T ss_pred CccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchh-
Confidence 445566777888888866433222223345778999999743222222111222221 356789999999987632
Q ss_pred hHHhhhCCCCCcCHHH-HHHHHHH------hCCeeEEEEeeccC----CCHHHHHHHHHHHhcCCCCCC
Q psy9997 265 LEKLAKNKQKPISFEQ-GEKLAKE------LKAVKYVECSALTQ----KGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~-~~~~~~~------~~~~~~~e~Sa~~~----~~v~~~f~~l~~~i~~~~~~~ 322 (330)
|.-..+. +....+- .+..|++++||+.| .++.++.+.+-.++.++.+.+
T Consensus 140 ---------r~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 140 ---------RASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred ---------hhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 3222222 2222222 13378999999999 789999999999999887765
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.9e-07 Score=74.33 Aligned_cols=37 Identities=92% Similarity=1.557 Sum_probs=33.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
+|++++|++|||||||+.+|..+.|...|.||+++.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~ 38 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 38 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee
Confidence 6999999999999999999999999999999876543
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-06 Score=69.76 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=36.6
Q ss_pred EEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCC
Q psy9997 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
++|++|||||||++++....+...+.++. .+.....+.+++ ..+.+||+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG 52 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPG 52 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCC
Confidence 58999999999999999886554444433 334445566665 3678899887
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-06 Score=88.43 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~ 260 (330)
+.+.||+|+..|.......++.+|++++|.|......-+... .|.. ... .+.|.|++.||+|...
T Consensus 89 i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~-~~~--~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 89 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQ-ALR--ERVKPVLFINKVDRLI 153 (731)
T ss_pred EEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHH-HHH--cCCCeEEEEECchhhc
Confidence 345677777777666666788899999999987653333322 2332 222 2568899999999864
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.1e-06 Score=79.87 Aligned_cols=56 Identities=25% Similarity=0.278 Sum_probs=44.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|.++||||||+++++.+.. ...+..|..+.....+.+++.+ +.+||+++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G 272 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAG 272 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCC
Confidence 57999999999999999999998763 4555666566666777777654 57899887
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.2e-06 Score=68.27 Aligned_cols=80 Identities=23% Similarity=0.130 Sum_probs=52.8
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-CCeeEE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-KAVKYV 294 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ 294 (330)
.-|.|.|++.-+. ...+-.+.+ -..=++|.||.|+.+. -..+.+....-+++. ...+++
T Consensus 120 ~~v~VidvteGe~---~P~K~gP~i-----~~aDllVInK~DLa~~------------v~~dlevm~~da~~~np~~~ii 179 (202)
T COG0378 120 LRVVVIDVTEGED---IPRKGGPGI-----FKADLLVINKTDLAPY------------VGADLEVMARDAKEVNPEAPII 179 (202)
T ss_pred eEEEEEECCCCCC---CcccCCCce-----eEeeEEEEehHHhHHH------------hCccHHHHHHHHHHhCCCCCEE
Confidence 6677778775331 110111111 1146899999999876 445556555555544 346899
Q ss_pred EEeeccCCCHHHHHHHHHHHh
Q psy9997 295 ECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i 315 (330)
++|+++|.|++++++++...+
T Consensus 180 ~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 180 FTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEeCCCCcCHHHHHHHHHhhc
Confidence 999999999999999887654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.2e-06 Score=66.05 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=51.3
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
.++++|++++|+|+.++.+..+. .+.+.+.....+.|+++|+||+|+..+ . ...+..++.+..+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~------------~--~~~~~~~~~~~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTE------------E--QRKAWAEYFKKEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCH------------H--HHHHHHHHHHhcC
Confidence 46789999999999988765532 122222222257899999999999643 1 1223344455555
Q ss_pred CeeEEEEeeccCCC
Q psy9997 290 AVKYVECSALTQKG 303 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~ 303 (330)
..++++||.++.+
T Consensus 72 -~~ii~iSa~~~~~ 84 (141)
T cd01857 72 -IVVVFFSALKENA 84 (141)
T ss_pred -CeEEEEEecCCCc
Confidence 5799999998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-06 Score=72.22 Aligned_cols=37 Identities=38% Similarity=0.677 Sum_probs=32.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN 99 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~ 99 (330)
++||+++|++|+|||||++++..+.|...+.||.++.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~ 37 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDF 37 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhhe
Confidence 4799999999999999999999999988888887543
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-06 Score=72.53 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=45.1
Q ss_pred ccccccccccccccc----ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEecc
Q psy9997 189 VRDRSLFDTAGQEDY----DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQI 256 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~ 256 (330)
...+.+.|+||-... ..+...++..+|++++|.+.+...+-.+.. .+....... ...+++|.||.
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence 346789999998652 244566779999999999999866655554 444444443 34499999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=67.36 Aligned_cols=217 Identities=17% Similarity=0.154 Sum_probs=115.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCc------cc-cccCCCCCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE------DY-DRLRPLSYPQ 134 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~------~~-~~l~~~~~~~ 134 (330)
..+++++|-+.||||+|+..+....- ...|.-|.-....-.+..+ ...+++.|.||.= +- ..-.-+--|-
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~--ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYN--GANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEec--CceEEEecCcccccccccCCCCCceEEEEeec
Confidence 46899999999999999988876442 1222222211111123333 3467889999831 10 1111244678
Q ss_pred CceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc--cccccCcccc
Q psy9997 135 TDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED--YDRLRPLSYP 212 (330)
Q Consensus 135 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~--~~~~~~~~~~ 212 (330)
||.++.|.|...+-.+-..-.++++...-.+.. ..|+.-+ +.....+..++..+--|--.|. +.-++..-+.
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk-~~Pniy~-----k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~ 213 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNK-RKPNIYF-----KKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIH 213 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccC-CCCCeEE-----EeeccCCeEEeeeeccccccHHHHHHHHHHHeec
Confidence 999999998776654433333333333211111 1111111 0111111111111111111121 1222222233
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
+|+ +++=+-+..+.|-++ +..+..-+|++-|-||+|. ++.|++..+|++-+
T Consensus 214 Nae--vl~ReD~t~DdfIDv-------i~gnr~Y~~ClYvYnKID~-----------------vs~eevdrlAr~Pn--- 264 (364)
T KOG1486|consen 214 NAE--VLFREDCTVDDFIDV-------IEGNRVYIKCLYVYNKIDQ-----------------VSIEEVDRLARQPN--- 264 (364)
T ss_pred cce--EEEecCCChHHHHHH-------HhccceEEEEEEEeeccce-----------------ecHHHHHHHhcCCC---
Confidence 443 333322333444443 3344445799999999987 56788889999876
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 293 YVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
-+-+|+..+.|++.+++.+-..+-
T Consensus 265 svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 265 SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred cEEEEeccccCHHHHHHHHHHHhc
Confidence 366899999999999998877663
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=72.34 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=45.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC----------CCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE----------YVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~----------~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++|+++|++|+|||||+++++...+... +.+|+. ..+...+..++.++.+.+||+++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpG 72 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPG 72 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCC
Confidence 68999999999999999999998877554 345553 33455666678888999999887
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=65.66 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=54.9
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
|.+++|.|+.++.+..+. ++........+.|+++|.||+|+... .. ..+....+.+..+ ..++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~~~~~p~IiVlNK~Dl~~~------------~~-~~~~~~~~~~~~~-~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIKEKGKKLILVLNKADLVPK------------EV-LRKWLAYLRHSYP-TIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHhcCCCCEEEEEechhcCCH------------HH-HHHHHHHHHhhCC-ceEE
Confidence 688999999988766543 22211112247999999999999542 10 0111223333333 5689
Q ss_pred EEeeccCCCHHHHHHHHHHH
Q psy9997 295 ECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+||++|.|++++.+.+...
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred EEeccCCcChhhHHHHHHHH
Confidence 99999999999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-06 Score=88.37 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+.+.||+|...|.......++.+|++++|.|....-.-+... .| ..+.. .++|+|+|.||+|+.
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~-~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VL-RQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HH-HHHHH--cCCCEEEEEEChhhh
Confidence 3567899999888776677789999999999988754433332 23 33333 368999999999997
|
|
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-06 Score=65.54 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=69.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++++++++|--+.|||+++-.+..+.. ....||++.+. .++++ +.+.+++|+-.+..++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv-etVty--kN~kfNvwdvGGqd~i----------------- 74 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKI----------------- 74 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeE-EEEEe--eeeEEeeeeccCchhh-----------------
Confidence 478999999999999999999887654 56677776333 23333 3567888965542222
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++++.||.+..++|+|.|...+ .+-.+.+.+++.-
T Consensus 75 -------------------------------------------RplWrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh~i 110 (180)
T KOG0071|consen 75 -------------------------------------------RPLWRHYYTGTQGLIFVVDSADR-DRIEEARNELHRI 110 (180)
T ss_pred -------------------------------------------hHHHHhhccCCceEEEEEeccch-hhHHHHHHHHHHH
Confidence 78899999999999999997766 5555555565554
Q ss_pred c
Q psy9997 162 F 162 (330)
Q Consensus 162 ~ 162 (330)
+
T Consensus 111 i 111 (180)
T KOG0071|consen 111 I 111 (180)
T ss_pred h
Confidence 3
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.1e-06 Score=68.45 Aligned_cols=56 Identities=16% Similarity=0.037 Sum_probs=37.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~ 60 (330)
.|+++|++|||||||++++..+.+...+.++..... ...+..+ +....+.+||+++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG 59 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPG 59 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCC
Confidence 489999999999999999999888766544432222 1223322 1345667777765
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=73.08 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=51.0
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH-HHHHHHHHH-h
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF-EQGEKLAKE-L 288 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~-~ 288 (330)
...+|.++++- .+.+-+++. .+...+ .+.|.++|.||+|+........ . .... .....+.+. .
T Consensus 145 ~~~aD~i~vv~---~~~~~~el~-~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~-~------~~~~~~~l~~l~~~~~ 209 (300)
T TIGR00750 145 ANMADTFVVVT---IPGTGDDLQ-GIKAGL----MEIADIYVVNKADGEGATNVTI-A------RLMLALALEEIRRRED 209 (300)
T ss_pred HHhhceEEEEe---cCCccHHHH-HHHHHH----hhhccEEEEEcccccchhHHHH-H------HHHHHHHHhhcccccc
Confidence 45577777773 233444444 233323 3578899999999975421000 0 0000 000111111 1
Q ss_pred C-CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 K-AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 ~-~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+ ..+++++||+++.|++++++++.+..
T Consensus 210 ~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 210 GWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred CCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1 13689999999999999999998763
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.2e-05 Score=73.16 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=52.8
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc------CCCCcEEEEEeccCCCCCch-hhHHhhhCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH------CQKTPFLLVGTQIDLREDAP-TLEKLAKNKQ 273 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~------~~~~piilV~nK~Dl~~~~~-~~~~~~~~~~ 273 (330)
.-|....-.....||+++||.|++-.+ |+.=- ....+.+++ ..-.-+|++.||.|+..=++ ..+++
T Consensus 266 kdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gf-d~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eI----- 338 (603)
T KOG0458|consen 266 KDFIPNMISGASQADVAVLVVDASTGE-FESGF-DPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEI----- 338 (603)
T ss_pred cccchhhhccccccceEEEEEECCcch-hhhcc-CCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHH-----
Confidence 444444445566788999999887432 22211 011112222 12457899999999986321 11111
Q ss_pred CCcCHHHHHHHH-HHhC----CeeEEEEeeccCCCHHHH
Q psy9997 274 KPISFEQGEKLA-KELK----AVKYVECSALTQKGLKNV 307 (330)
Q Consensus 274 ~~v~~~~~~~~~-~~~~----~~~~~e~Sa~~~~~v~~~ 307 (330)
......|. +..| .+.|+.+|+..|+|+-..
T Consensus 339 ----k~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 339 ----KNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ----HHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 11233333 2222 146999999999998655
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=71.99 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=72.7
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+..+.+-||||+|.|...+......||+.|+..|.- ....... .-+..|.....-.-+++..||.||..-++..=
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F-- 159 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF-- 159 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHHHH--
Confidence 456789999999999998888899999999999983 2222221 22222322223456899999999987532110
Q ss_pred hhCCCCCcCHHHHHHHHHHhCC--eeEEEEeeccCCCHHH
Q psy9997 269 AKNKQKPISFEQGEKLAKELKA--VKYVECSALTQKGLKN 306 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~ 306 (330)
..-.++-..|+.+++. ..++++||..|+||-.
T Consensus 160 ------~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 ------EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred ------HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 1123445677887764 3589999999999753
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=65.98 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=25.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
|...+|+++|..|+|||||+++++...+
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCce
Confidence 6789999999999999999999987654
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-06 Score=73.67 Aligned_cols=118 Identities=22% Similarity=0.389 Sum_probs=98.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+.|+++|+.|||||||++||..+.|.+.|.+|++..+ .+.+.+++..+.+++|||+|+++|+.+++.||+++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999999999998776 457889999999999999999999999999999999999999
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|.+. ..+ ...+..|...+.....+..++.++|||.|+..
T Consensus 81 Dvtd--~~S---f~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 81 DITK--KET---FDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred ECcC--HHH---HHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 8442 222 23345566655544556789999999999853
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.6e-07 Score=70.47 Aligned_cols=47 Identities=28% Similarity=0.633 Sum_probs=38.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
+|.+++|++|||||||+.+|..+.|+..|..|+|. .+.+...|.+|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv-----------DfkirTv~i~G~ 55 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV-----------DFKIRTVDINGD 55 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeee-----------eEEEEEeecCCc
Confidence 57889999999999999999999998888777643 345666788876
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.8e-06 Score=76.32 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=31.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
+||+++|+.|||||||+++|+.+.|...|.||+++.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~ 37 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFH 37 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhE
Confidence 4789999999999999999998888888888876443
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=67.19 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=58.3
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...+++||.+++++|++++....+. .++. ...+.|.++|.||+|+..+ .. .....++.+.
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~----~~~~k~~ilVlNK~Dl~~~------------~~--~~~~~~~~~~ 73 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEK----ILGNKPRIIVLNKADLADP------------KK--TKKWLKYFES 73 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh--hhHh----HhcCCCEEEEEehhhcCCh------------HH--HHHHHHHHHh
Confidence 4467789999999999876553322 1222 2235799999999999532 10 1111122222
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+ ..++.+||+++.|++++.+.+...+
T Consensus 74 ~~-~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 KG-EKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHH
Confidence 23 4689999999999999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-06 Score=72.09 Aligned_cols=119 Identities=20% Similarity=0.247 Sum_probs=100.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|+.|||||||+++|..+.|...+.++++..+. ..+.+++..+.+++|||+|+++|+.+++.||+++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999999999999999887774 578889999999999999999999999999999999999
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|||.. .......+..|+.++..+ .+..|+.++|||.|+..
T Consensus 85 VfD~t-----~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~ 124 (189)
T cd04121 85 VYDIT-----NRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAF 124 (189)
T ss_pred EEECc-----CHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchh
Confidence 99832 222333455677766443 36789999999999953
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-06 Score=73.89 Aligned_cols=41 Identities=34% Similarity=0.526 Sum_probs=36.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
.+..+||+++|++|||||||+++|..+.|...+.||++..+
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~ 50 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV 50 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeE
Confidence 36789999999999999999999999999988888886544
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.2e-05 Score=73.41 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=58.5
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH----HHHHHHhCC
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG----EKLAKELKA 290 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 290 (330)
+.+++|.|+.+.. ..|.+++.+...+.|+++|+||+|+... ....+++ ..+++..+.
T Consensus 71 ~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~-------------~~~~~~i~~~l~~~~k~~g~ 131 (365)
T PRK13796 71 ALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPK-------------SVKKNKVKNWLRQEAKELGL 131 (365)
T ss_pred cEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCC-------------ccCHHHHHHHHHHHHHhcCC
Confidence 4889999987633 2577777776668899999999999642 2223333 334555552
Q ss_pred --eeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 291 --VKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 291 --~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..++.+||+++.|++++++.+...
T Consensus 132 ~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 132 RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 158999999999999999998654
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=70.97 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=40.6
Q ss_pred CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 246 ~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..+-++|.||+|+... .....+...+..+.. ...+++++||++|+|++++.+++..+
T Consensus 230 ~~ADIVVLNKiDLl~~------------~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPY------------LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcc------------cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999653 112233344444333 34679999999999999999998663
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.1e-05 Score=68.96 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
.++++|+.|+||||+++.++...|.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~ 52 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFL 52 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCcc
Confidence 6899999999999999999986643
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-06 Score=69.73 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=86.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+.+|..+.|...+.|+ +..+...+.+++..+.+.+|||+|++. ..|++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999998877666 445567888999999999999999964 457899999999997
Q ss_pred cccchhhhcccccccCCcceeeeccC-CCcccccccceeecc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEH-SPPMKLHTLGFITNI 184 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~ 184 (330)
... +.++ ..+..|+..+.... .+..|+.++|+|.|+
T Consensus 75 ~~~--~~sf---~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 75 LEN--EASF---QTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred CCC--HHHH---HHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 332 2222 23445666555443 356788999999887
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.3e-06 Score=73.72 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=39.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCC---C-------Cceeecc-eEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY---V-------PTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~---~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+|+|.+|+|||||++.|++....... . .+..... ...+.-++..+.+.++||+|.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 589999999999999999999987653331 1 1111111 224455778899999999996
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.1e-06 Score=72.96 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=35.3
Q ss_pred EEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCc---------------eeeeeeeecCCC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQ 121 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~ 121 (330)
+.++|.+|+|||||.+++++.+. ..+|+.|.-+...-.+.+.+. ...+++.|+||.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl 72 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGL 72 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCc
Confidence 46899999999999999998764 233433332222222233221 234788888886
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=68.79 Aligned_cols=123 Identities=34% Similarity=0.542 Sum_probs=82.8
Q ss_pred eeeEEEEcCCCCChhHHHH-HHHhC-----CCCCCCCCCcc--cceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLI-SYTTN-----KFPSEYVPTVF--DNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAV 74 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~-~~~~~-----~f~~~~~~tv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~ 74 (330)
.+||+++||+|||||||+. ++..+ .|..+|.||++ +.|.....+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~--------------------------- 54 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVL--------------------------- 54 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeec---------------------------
Confidence 5899999999999999995 66544 46677889984 3332211100
Q ss_pred ceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccc
Q psy9997 75 GKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDW 154 (330)
Q Consensus 75 GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~ 154 (330)
....+.+++..+.+++|||+|++. .+++.||+++|++++|||... ..++
T Consensus 55 -------------------------~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~--~~Sf-- 103 (195)
T cd01873 55 -------------------------ERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS--PNSL-- 103 (195)
T ss_pred -------------------------cccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC--hhHH--
Confidence 001123456678899999999975 467889999999999998432 1122
Q ss_pred ccccC-CcceeeeccCCCcccccccceeeccC
Q psy9997 155 NRKLG-GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+. .|...+... .+..|+.++|+|.|+.
T Consensus 104 -~~~~~~w~~~i~~~-~~~~piilvgNK~DL~ 133 (195)
T cd01873 104 -RNVKTMWYPEIRHF-CPRVPVILVGCKLDLR 133 (195)
T ss_pred -HHHHHHHHHHHHHh-CCCCCEEEEEEchhcc
Confidence 2332 355544332 3567889999999984
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-06 Score=67.65 Aligned_cols=53 Identities=26% Similarity=0.219 Sum_probs=37.2
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
+++++|.+|+|||||+|++.+...... ....+ ......+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998775321 11111 12233455544 5789999997
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=7e-06 Score=68.79 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=48.4
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+++.++|||+|.++++|||-+. ......+.+|+.++..|..+..+++++|||.|+..
T Consensus 77 rAitSaYYrgAvGAllVYDITr-----~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITR-----RQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred ccccchhhcccceeEEEEechh-----HHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 7788999999999999999332 22234889999999999999999999999999954
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=78.78 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=37.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC-CCCCC--CCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK-FPSEY--VPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+++|.+|+||||++|.+++.+ |.... ..|... .......++ ..+.++||||.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG--~~L~VIDTPGL 176 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQG--VKIRVIDTPGL 176 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECC--ceEEEEECCCC
Confidence 5789999999999999999999876 32221 122221 111222333 46889999998
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.5e-05 Score=66.63 Aligned_cols=53 Identities=25% Similarity=0.162 Sum_probs=38.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||++++..+.+...+.|++.. ....+.+. .+.+||+++
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G 61 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPG 61 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCc
Confidence 579999999999999999999988877666664421 12222222 478898886
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.2e-06 Score=71.78 Aligned_cols=43 Identities=33% Similarity=0.537 Sum_probs=36.7
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
.+.+..+|++++|++|||||||+++++.+.+...|.||++..+
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~ 46 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEV 46 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 3456779999999999999999999999999888888886543
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=71.12 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=34.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+|+++|.+|||||||+++++...+. +....|..+........++ ..+.+||+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG 57 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPG 57 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcC
Confidence 6899999999999999999987653 2333343332222222222 3466777776
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.7e-06 Score=68.20 Aligned_cols=21 Identities=43% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEcCCCCChhHHHHHHHhCCC
Q psy9997 8 VVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f 28 (330)
++|++|||||||++++....+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999998754
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=97.84 E-value=3e-05 Score=76.64 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=40.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
+..+|+++|+.++|||||+.++....+...+.+.+.-.. ...+..++.. .+.+||+++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPG 144 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPG 144 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCC
Confidence 346899999999999999999998888776655442111 2334443321 567888887
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.9e-05 Score=65.02 Aligned_cols=56 Identities=18% Similarity=0.017 Sum_probs=39.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
..||+++|++|||||||+++++.+.|...+.++.+.... +........+.+||+++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~l~l~DtpG 79 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL--INFFEVNDKLRLVDLPG 79 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE--EEEEecCCeEEEeCCCC
Confidence 378999999999999999999988777777777653321 11111135677787775
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.1e-07 Score=71.06 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS 90 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~ 90 (330)
+|++++|+.|+|||+|+.|+....|..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~ 27 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY 27 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc
Confidence 489999999999999999997776643
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=67.73 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=65.3
Q ss_pred cccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 195 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.||+|+..|--.-...+.-.|+++|+.|... |++-- .+... ...+.+-|+|.||+|...+.+.
T Consensus 73 vDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrF-----VlkKA--l~~gL~PIVVvNKiDrp~Arp~------- 138 (603)
T COG1217 73 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRF-----VLKKA--LALGLKPIVVINKIDRPDARPD------- 138 (603)
T ss_pred ecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhh-----hHHHH--HHcCCCcEEEEeCCCCCCCCHH-------
Confidence 3444445554444555667899999999864 22211 11111 1247788899999999876331
Q ss_pred CCCCcCHHHHHHHHHHhCC------eeEEEEeeccCC----------CHHHHHHHHHHHhcCCC
Q psy9997 272 KQKPISFEQGEKLAKELKA------VKYVECSALTQK----------GLKNVFDEAILAALEPP 319 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~------~~~~e~Sa~~~~----------~v~~~f~~l~~~i~~~~ 319 (330)
.-.+++..+.-.+++ +|++..||.+|. ++.-+|+.+++.+=.+.
T Consensus 139 ----~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 139 ----EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred ----HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 122344444444443 678999999885 57778888777665443
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.3e-05 Score=67.30 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=59.2
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...++.+|.+++|.|..++.+..+.. +...+ .+.|+++|.||+|+... . ...+....+ +.
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l----~~kp~IiVlNK~DL~~~------------~-~~~~~~~~~-~~ 75 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR----GNKPRLIVLNKADLADP------------A-VTKQWLKYF-EE 75 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH----CCCCEEEEEEccccCCH------------H-HHHHHHHHH-HH
Confidence 34577899999999998776544421 22222 36899999999999532 0 011111122 23
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.+ ..++.+||+++.|++++.+.+...+-
T Consensus 76 ~~-~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 KG-IKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 33 47899999999999999988877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.5e-06 Score=69.79 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=94.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-----CceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-----GEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
+||+++|++|||||||+++|.++.|.+.+.||++..+. +.+.++ +..+.++||||+|+++|..+++.||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999999999987664 345553 578999999999999999999999999999
Q ss_pred EEEEeccccchhhhcccccccCCcceeeec-------------------cCCCcccccccceeeccCC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFIST-------------------EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~g~~~~~~~ 186 (330)
+|+|||-+. ......+..|+.++.. ...+..|+.++|||.|+..
T Consensus 81 iIlVyDvtn-----~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTN-----RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcC-----hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999998332 1222344556555432 1235688999999999853
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=97.81 E-value=5e-05 Score=63.65 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=38.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeE-EEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~-~~~~~~~~~~~~~~~~~~ 60 (330)
..+|+++|++|+|||||++++....+...+.++.+..... ....++ .+.+||+++
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG 73 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPG 73 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCC
Confidence 5799999999999999999999887666666665543322 222222 466777665
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.1e-05 Score=76.08 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=48.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
+.+.||+|+-.|.......++.+|++++++|+-....+...+ .+...-+ .+.|+++|.||.|..
T Consensus 199 ~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr--~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 199 MNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER--IIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred eeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH--HHHHHHh--ccCcEEEEEehhHHH
Confidence 456778887888777777888999999999998877776654 2211111 479999999999975
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.4e-05 Score=73.52 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=36.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+|+++|.++||||||++++....+.. +...+-.+.....+.+.+. ..+.+|||+|
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG 254 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVG 254 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCc
Confidence 489999999999999999999765432 2222222334445555432 1345788776
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.9e-06 Score=67.33 Aligned_cols=82 Identities=32% Similarity=0.480 Sum_probs=75.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+++++|||+-||||||++.|+.++|.+-.+||+|.++ ..-+++ .|..++|++|||+|||+|++++.+||||+=+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 468999999999999999999999999999999998777 445555 588999999999999999999999999999999
Q ss_pred EEec
Q psy9997 140 VCFG 143 (330)
Q Consensus 140 ~v~~ 143 (330)
+|||
T Consensus 87 lvyd 90 (213)
T KOG0091|consen 87 LVYD 90 (213)
T ss_pred EEEe
Confidence 9986
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=9e-05 Score=68.68 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=40.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC---CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP---SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~---~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++.+.+. +.+.+|. +.....+..++. .+.+||++|
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr-~~~~~~~~~~~~--qi~~~DTpG 109 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR-SIITGIITLKDT--QVILYDTPG 109 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc-CcEEEEEEeCCe--EEEEEECCC
Confidence 469999999999999999999988774 3333442 333445555554 468999987
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0001 Score=60.52 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=38.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|+|||||+++++...+. ....++..+.....+..++.. +.+||+++
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG 59 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAG 59 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCC
Confidence 4689999999999999999999887542 223333333333444555544 45787776
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.4e-05 Score=72.50 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=41.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG 107 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~ 107 (330)
..+..+||+++|+.|||||||+++|..+.|...+.+|+|..+. +.+.++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~ 66 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYG 66 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEEC
Confidence 3566799999999999999999999999999999999987663 445544
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=65.60 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=48.6
Q ss_pred EECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeecc
Q psy9997 105 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 105 ~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
.++.....+.+|||||++.|......+++.+|++++|+|...... .....++... .....|+..+.||.|.
T Consensus 65 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~------~~~~~i~~~~---~~~~~P~iivvNK~D~ 135 (267)
T cd04169 65 QFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE------PQTRKLFEVC---RLRGIPIITFINKLDR 135 (267)
T ss_pred EEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc------HHHHHHHHHH---HhcCCCEEEEEECCcc
Confidence 344556788999999999888777788999999999998653211 1111121111 1234567788999987
Q ss_pred CC
Q psy9997 185 NP 186 (330)
Q Consensus 185 ~~ 186 (330)
..
T Consensus 136 ~~ 137 (267)
T cd04169 136 EG 137 (267)
T ss_pred CC
Confidence 43
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.5e-06 Score=71.93 Aligned_cols=63 Identities=14% Similarity=-0.029 Sum_probs=38.4
Q ss_pred ecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCC-ceeecceEEEEECCceeeeeeeecCCC
Q psy9997 57 FARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-TVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 57 ~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
|.....+.+++++|.+|||||||++.+...+-...... +-|. .+.+..-.....+.+.|.+|.
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~--Tq~in~f~v~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK--TQAINHFHVGKSWYEVDLPGY 193 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc--ceeeeeeeccceEEEEecCCc
Confidence 44556779999999999999999999987543221111 1111 122222223335566788884
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00061 Score=62.08 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=62.3
Q ss_pred ccccccccccccccccCcccc--CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCch------
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYP--QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAP------ 263 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~------ 263 (330)
..+.|.+|..+|....-..+. ..+..+|+...+.--..-.- ..+-.+. +-++|+.++.+|.|+....-
T Consensus 251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~--AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIA--ALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHH--HhCCCeEEEEEeeccccchhHHHHHH
Confidence 357888998888664443333 35667777766543222111 1122222 24899999999999986511
Q ss_pred hhHH-hhhC-----CCCCcCHHHHHHHHHHh---CCeeEEEEeeccCCCHHHH
Q psy9997 264 TLEK-LAKN-----KQKPISFEQGEKLAKEL---KAVKYVECSALTQKGLKNV 307 (330)
Q Consensus 264 ~~~~-~~~~-----~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~ 307 (330)
..++ ++.. ..+.-+.+++..-+++. +-.|+|-+|+.+|+|++-+
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1111 1111 11222344444333332 2368999999999997644
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.7e-05 Score=77.45 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc---cceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~---~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
..+|+++|+.++|||||+.++....+.....+.+. ..+...+..++....+.+||++|
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPG 304 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPG 304 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCc
Confidence 45899999999999999999998887665544331 22333334445567788888887
|
|
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.6e-05 Score=63.10 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=48.8
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDR 192 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 192 (330)
++...+|||+|.++++||| ..+.+....+..|+.......++...+.+.|+|.|+...+.+++
T Consensus 72 RSVtRsYYRGAAGAlLVYD-----~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf 134 (214)
T KOG0086|consen 72 RSVTRSYYRGAAGALLVYD-----ITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF 134 (214)
T ss_pred HHHHHHHhccccceEEEEe-----ccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH
Confidence 5667788999999999988 33445566788888888888888888888898888866555544
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=64.84 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=58.9
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...++.+|++++|.|..++.+.++. ++... ..+.|+++|.||+|+... . . .+....+.+.
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~---~l~~~---~~~kp~iiVlNK~DL~~~------------~-~-~~~~~~~~~~ 78 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENP---MIDKI---IGNKPRLLILNKSDLADP------------E-V-TKKWIEYFEE 78 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCCh---hHHHH---hCCCCEEEEEEchhcCCH------------H-H-HHHHHHHHHH
Confidence 3457789999999999877654432 12222 236899999999999532 0 0 1112222233
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.+ ..++.+||+++.|++++.+.+...+-
T Consensus 79 ~~-~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QG-IKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 33 57899999999999999988776653
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.2e-06 Score=73.99 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=56.7
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-C----CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-Q----KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~----~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 285 (330)
...+|.++-|-|+++|.--+... ..+.-+.+.. + ...++=|-||+|..+.. +..
T Consensus 255 VaeadlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~e~------- 313 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------VEE------- 313 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------Ccc-------
Confidence 45689999999999998777766 5555555543 1 23467788888886531 111
Q ss_pred HHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 286 KELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 286 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+.+ .-+.+||++|.|++++..++-.++.
T Consensus 314 E~n---~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 EKN---LDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccC---CccccccccCccHHHHHHHHHHHhh
Confidence 112 2577999999999999987655543
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0002 Score=66.62 Aligned_cols=107 Identities=19% Similarity=0.109 Sum_probs=69.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+.+.|++|.+.+-...-..+...|..+||.+.+ .+++-+.+. +.+.....-.++|.||+|..++...
T Consensus 52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~------iLdllgi~~giivltk~D~~d~~r~---- 121 (447)
T COG3276 52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL------ILDLLGIKNGIIVLTKADRVDEARI---- 121 (447)
T ss_pred eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH------HHHhcCCCceEEEEeccccccHHHH----
Confidence 344555555666554444566789999999996 455555554 3333344567999999999875211
Q ss_pred hhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 269 AKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+...++..+.-. +...+++.+|+++|.|++++.+.+....
T Consensus 122 ------e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 122 ------EQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ------HHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 111112222212 3345789999999999999999998887
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=74.60 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=39.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.-.|+++|+.++|||||+.++....+.....+.+. ......+.+++ ..+.+||+++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPG 346 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPG 346 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCC
Confidence 345799999999999999999988777655444331 11123444444 4567888887
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.6e-05 Score=69.20 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=39.3
Q ss_pred CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHH-HHHHHhcC
Q psy9997 245 QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD-EAILAALE 317 (330)
Q Consensus 245 ~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~-~l~~~i~~ 317 (330)
...|+|+|+||+|+... .. ....+........++.+||+.+.+++++.+ .++..+-+
T Consensus 213 t~KPvI~VlNK~Dl~~~------------~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 213 RSKPMVIAANKADIPDA------------EN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred cCCcEEEEEEHHHccCh------------HH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 35899999999997532 11 111222233335799999999999999998 47776644
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00035 Score=60.01 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=59.6
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhh---hcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT---HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~---~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
.++++-+.++|.|..+. -.+.+. .+..-+. .-.+++.+=+...|.|-..+....+ .+|.+-......++.
T Consensus 98 iF~~~gALifvIDaQdd-y~eala-~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie-----tqrdI~qr~~d~l~d 170 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDD-YMEALA-RLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE-----TQRDIHQRTNDELAD 170 (347)
T ss_pred HHhccCeEEEEEechHH-HHHHHH-HHHHHhhheeecCCCceEEEEEEeccCCchhhhhh-----hHHHHHHHhhHHHHh
Confidence 46778889999887542 222222 2222222 2347888889999999877643322 123333222333333
Q ss_pred Hh---CCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 287 EL---KAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 287 ~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.. -.+.|.-+ +.....+-|+|..++++++.+-+
T Consensus 171 ~gle~v~vsf~LT-SIyDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 171 AGLEKVQVSFYLT-SIYDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred hhhccceEEEEEe-eecchHHHHHHHHHHHHHhhhch
Confidence 21 11344444 45568899999999999986533
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.58 E-value=2.9e-05 Score=63.54 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=39.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEE-EEECCceeeeeeeecCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~g~ 121 (330)
...+++++|.+|+||||+++++.+.. ...+.++.+...... +..+ ..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKIT---SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcC---CCEEEEECcCC
Confidence 35688999999999999999998654 334455555443322 2222 26889999984
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 330 | ||||
| 1a4r_B | 191 | G12v Mutant Of Human Placental Cdc42 Gtpase In The | 4e-61 | ||
| 2odb_A | 192 | The Crystal Structure Of Human Cdc42 In Complex Wit | 4e-61 | ||
| 2dfk_B | 194 | Crystal Structure Of The Cdc42-Collybistin Ii Compl | 4e-61 | ||
| 1grn_A | 191 | Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. | 5e-61 | ||
| 1an0_A | 190 | Cdc42hs-Gdp Complex Length = 190 | 2e-60 | ||
| 1nf3_A | 195 | Structure Of Cdc42 In A Complex With The Gtpase-Bin | 4e-60 | ||
| 2qrz_A | 189 | Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is | 4e-60 | ||
| 2wm9_B | 190 | Structure Of The Complex Between Dock9 And Cdc42. L | 1e-59 | ||
| 1aje_A | 194 | Cdc42 From Human, Nmr, 20 Structures Length = 194 | 4e-59 | ||
| 3vhl_B | 195 | Crystal Structure Of The Dhr-2 Domain Of Dock8 In C | 4e-59 | ||
| 2ase_A | 178 | Nmr Structure Of The F28l Mutant Of Cdc42hs Length | 4e-59 | ||
| 1kz7_B | 188 | Crystal Structure Of The DhPH FRAGMENT OF MURINE DB | 5e-59 | ||
| 1ees_A | 178 | Solution Structure Of Cdc42hs Complexed With A Pept | 5e-59 | ||
| 4did_A | 193 | Crystal Structure Of Salmonella Effector N-Terminal | 5e-59 | ||
| 2kb0_A | 178 | Cdc42(T35a) Length = 178 | 5e-59 | ||
| 1gzs_A | 180 | Crystal Structure Of The Complex Between The Gef Do | 5e-59 | ||
| 1cee_A | 179 | Solution Structure Of Cdc42 In Complex With The Gtp | 5e-59 | ||
| 3gcg_A | 182 | Crystal Structure Of Map And Cdc42 Complex Length = | 6e-59 | ||
| 1doa_A | 191 | Structure Of The Rho Family Gtp-Binding Protein Cdc | 6e-59 | ||
| 3eg5_A | 178 | Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W | 9e-59 | ||
| 1am4_D | 177 | Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S | 1e-58 | ||
| 1cf4_A | 184 | Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | 4e-58 | ||
| 3qbv_A | 178 | Structure Of Designed Orthogonal Interaction Betwee | 5e-58 | ||
| 1i4d_D | 192 | Crystal Structure Analysis Of Rac1-Gdp Complexed Wi | 9e-48 | ||
| 2yin_C | 196 | Structure Of The Complex Between Dock2 And Rac1. Le | 1e-47 | ||
| 3b13_B | 184 | Crystal Structure Of The Dhr-2 Domain Of Dock2 In C | 1e-47 | ||
| 3th5_A | 204 | Crystal Structure Of Wild-Type Rac1 Length = 204 | 2e-47 | ||
| 3sbd_A | 187 | Crystal Structure Of Rac1 P29s Mutant Length = 187 | 2e-47 | ||
| 1foe_B | 177 | Crystal Structure Of Rac1 In Complex With The Guani | 2e-47 | ||
| 4gzm_A | 204 | Crystal Structure Of Rac1 F28l Mutant Length = 204 | 2e-47 | ||
| 2fju_A | 178 | Activated Rac1 Bound To Its Effector Phospholipase | 2e-47 | ||
| 3sua_A | 184 | Crystal Structure Of The Intracellular Domain Of Pl | 2e-47 | ||
| 1he1_C | 176 | Crystal Structure Of The Complex Between The Gap Do | 2e-47 | ||
| 2vrw_A | 184 | Critical Structural Role For The Ph And C1 Domains | 3e-47 | ||
| 2w2v_A | 184 | Rac2 (G12v) In Complex With Gtpgs Length = 184 | 3e-47 | ||
| 2w2t_A | 185 | Rac2 (G12v) In Complex With Gdp Length = 185 | 4e-47 | ||
| 1ds6_A | 192 | Crystal Structure Of A Rac-Rhogdi Complex Length = | 5e-47 | ||
| 1i4t_D | 192 | Crystal Structure Analysis Of Rac1-Gmppnp In Comple | 6e-47 | ||
| 1e96_A | 192 | Structure Of The RacP67PHOX COMPLEX Length = 192 | 7e-47 | ||
| 1hh4_A | 192 | Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ | 8e-47 | ||
| 2ic5_A | 180 | Crystal Structure Of Human Rac3 Grown In The Presen | 9e-47 | ||
| 2g0n_A | 179 | The Crystal Structure Of The Human Rac3 In Complex | 9e-47 | ||
| 2c2h_A | 192 | Crystal Structure Of The Human Rac3 In Complex With | 1e-46 | ||
| 2atx_A | 194 | Crystal Structure Of The Tc10 Gppnhp Complex Length | 1e-46 | ||
| 4gzl_A | 204 | Crystal Structure Of Rac1 Q61l Mutant Length = 204 | 1e-46 | ||
| 3ryt_C | 180 | The Plexin A1 Intracellular Region In Complex With | 1e-46 | ||
| 1g4u_R | 184 | Crystal Structure Of The Salmonella Tyrosine Phosph | 2e-46 | ||
| 2h7v_A | 188 | Co-crystal Structure Of Ypka-rac1 Length = 188 | 2e-46 | ||
| 1mh1_A | 186 | Small G-Protein Length = 186 | 2e-46 | ||
| 2wkr_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 2e-45 | ||
| 2wkq_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 2e-45 | ||
| 2wkp_A | 332 | Structure Of A Photoactivatable Rac1 Containing Lov | 2e-45 | ||
| 1ryf_A | 203 | Alternative Splicing Of Rac1 Generates Rac1b, A Sel | 6e-44 | ||
| 2q3h_A | 201 | The Crystal Structure Of Rhoua In The Gdp-bound Sta | 2e-40 | ||
| 1z2c_A | 193 | Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With | 1e-36 | ||
| 2gcn_A | 201 | Crystal Structure Of The Human Rhoc-Gdp Complex Len | 5e-36 | ||
| 3tvd_A | 193 | Crystal Structure Of Mouse Rhoa-Gtp Complex Length | 2e-35 | ||
| 1ow3_B | 193 | Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With | 2e-35 | ||
| 4f38_A | 195 | Crystal Structure Of Geranylgeranylated Rhoa In Com | 2e-35 | ||
| 1x86_B | 196 | Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A | 2e-35 | ||
| 1lb1_B | 192 | Crystal Structure Of The Dbl And Pleckstrin Homolog | 3e-35 | ||
| 3kz1_E | 182 | Crystal Structure Of The Complex Of Pdz-Rhogef DhPH | 3e-35 | ||
| 1cc0_A | 190 | Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le | 3e-35 | ||
| 3lw8_A | 185 | Shigella Ipgb2 In Complex With Human Rhoa, Gdp And | 3e-35 | ||
| 1s1c_A | 183 | Crystal Structure Of The Complex Between The Human | 3e-35 | ||
| 1xcg_B | 178 | Crystal Structure Of Human Rhoa In Complex With DhP | 3e-35 | ||
| 1tx4_B | 177 | RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | 3e-35 | ||
| 3msx_A | 180 | Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With | 3e-35 | ||
| 1cxz_A | 182 | Crystal Structure Of Human Rhoa Complexed With The | 4e-35 | ||
| 2gco_A | 201 | Crystal Structure Of The Human Rhoc-gppnhp Complex | 8e-35 | ||
| 3a58_B | 188 | Crystal Structure Of Sec3p - Rho1p Complex From Sac | 2e-34 | ||
| 1kmq_A | 184 | Crystal Structure Of A Constitutively Activated Rho | 2e-34 | ||
| 2fv8_A | 207 | The Crystal Structure Of Rhob In The Gdp-Bound Stat | 3e-34 | ||
| 1dpf_A | 180 | Crystal Structure Of A Mg-Free Form Of Rhoa Complex | 5e-34 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 1e-31 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 4e-30 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 4e-29 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 6e-29 | ||
| 2j0v_A | 212 | The Crystal Structure Of Arabidopsis Thaliana Rac7- | 3e-28 | ||
| 1gwn_A | 205 | The Crystal Structure Of The Core Domain Of RhoeRND | 4e-26 | ||
| 1m7b_A | 184 | Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI | 4e-26 | ||
| 2v55_B | 200 | Mechanism Of Multi-site Phosphorylation From A Rock | 6e-26 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 1e-23 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 2e-23 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 1e-23 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 2e-23 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 3e-22 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 3e-22 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 3e-22 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 2e-10 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 4e-05 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 2e-10 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 1e-06 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 2e-10 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 1e-06 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 2e-10 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 1e-05 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 2e-10 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 2e-06 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-10 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-05 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 2e-10 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 2e-06 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 4e-10 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 4e-05 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 4e-10 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 1e-05 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 4e-10 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 2e-05 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 7e-10 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 2e-06 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 7e-10 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 2e-06 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 2e-09 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 2e-09 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 1e-05 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 1e-08 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 1e-06 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 1e-08 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 5e-07 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 1e-08 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 9e-07 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 5e-08 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 2e-05 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 6e-08 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 8e-08 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 1e-05 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 2e-07 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 2e-07 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 3e-07 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 3e-07 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 4e-06 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 3e-07 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 6e-06 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 3e-07 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 2e-06 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 4e-07 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 3e-04 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 4e-07 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 7e-07 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 4e-07 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 9e-05 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 4e-07 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 9e-06 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 5e-07 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 2e-04 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 5e-07 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 5e-07 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 4e-04 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 6e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 1e-05 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 6e-07 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 2e-05 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 6e-07 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 2e-05 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 7e-07 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 2e-05 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 7e-07 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 2e-05 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 7e-07 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 1e-05 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 7e-07 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 2e-05 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 7e-07 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 7e-07 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 6e-05 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 7e-07 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 6e-05 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 7e-07 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 1e-05 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 8e-07 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 9e-06 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 8e-07 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 8e-07 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 9e-07 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 8e-07 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 2e-05 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 8e-07 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 1e-05 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 8e-07 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 1e-05 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 9e-07 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 1e-06 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 9e-07 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 2e-05 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 9e-07 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 9e-07 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 5e-05 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 9e-07 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 9e-07 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 1e-06 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 3e-06 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 1e-06 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 2e-05 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 1e-06 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 1e-05 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 1e-06 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 1e-06 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 1e-06 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 3e-04 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 1e-06 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 2e-06 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 2e-05 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 2e-06 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 2e-06 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 1e-05 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 2e-06 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 2e-06 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 2e-05 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 2e-06 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 2e-06 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 3e-06 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 2e-06 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 2e-06 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 4e-06 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 2e-06 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 2e-05 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 2e-06 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 5e-05 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 2e-06 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 2e-06 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 1e-05 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 2e-06 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 4e-05 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-06 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-05 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 2e-06 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 3e-06 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 6e-05 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 3e-06 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 3e-06 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 6e-05 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 3e-06 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 3e-06 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 2e-04 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 3e-06 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 3e-06 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 6e-05 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 3e-06 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 3e-06 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 3e-06 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 3e-06 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 6e-05 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 3e-06 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 3e-06 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 3e-06 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 1e-04 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 4e-06 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 2e-04 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 5e-06 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 5e-06 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 5e-06 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 6e-06 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 6e-06 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 6e-06 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 6e-06 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 6e-06 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 2e-04 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 6e-06 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 1e-04 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 7e-06 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 7e-06 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 7e-06 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 7e-06 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-04 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 7e-06 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 2e-04 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 8e-06 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 8e-06 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 8e-06 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 8e-06 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 8e-06 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 1e-04 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 8e-06 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 2e-04 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 8e-06 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 1e-05 | ||
| 2atv_A | 196 | The Crystal Structure Of Human Rerg In The Gdp Boun | 9e-06 | ||
| 2atv_A | 196 | The Crystal Structure Of Human Rerg In The Gdp Boun | 2e-04 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 9e-06 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 9e-06 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 2e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 9e-06 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 1e-05 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 1e-05 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 1e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 1e-05 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 1e-05 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 1e-05 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 2e-05 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 2e-05 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 2e-05 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 2e-05 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 2e-05 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 2e-05 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 3e-05 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 3e-05 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 3e-05 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 4e-05 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 4e-05 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 4e-05 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 4e-05 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 9e-05 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 5e-05 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 5e-05 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 6e-05 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 6e-05 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 8e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 9e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 5e-04 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 1e-04 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 4e-04 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 1e-04 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 1e-04 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 2e-04 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 1e-04 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 1e-04 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 2e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 1e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 6e-04 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 1e-04 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 1e-04 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 2e-04 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 2e-04 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 3e-04 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-04 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 2e-04 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 2e-04 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 2e-04 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 2e-04 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 2e-04 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 2e-04 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 7e-04 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 3e-04 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 3e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 3e-04 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 3e-04 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 4e-04 | ||
| 3cbq_A | 195 | Crystal Structure Of The Human Rem2 Gtpase With Bou | 4e-04 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 5e-04 | ||
| 4aii_A | 180 | Crystal Structure Of The Rat Rem2 Gtpase - G Domain | 6e-04 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 6e-04 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 6e-04 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 6e-04 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 7e-04 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 7e-04 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 7e-04 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 8e-04 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 7e-04 | ||
| 3q85_A | 169 | Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp | 7e-04 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 7e-04 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 7e-04 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 7e-04 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 8e-04 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 8e-04 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 8e-04 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 8e-04 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 9e-04 |
| >pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191 | Back alignment and structure |
|
| >pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192 | Back alignment and structure |
|
| >pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194 | Back alignment and structure |
|
| >pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191 | Back alignment and structure |
|
| >pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190 | Back alignment and structure |
|
| >pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195 | Back alignment and structure |
|
| >pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189 | Back alignment and structure |
|
| >pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190 | Back alignment and structure |
|
| >pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194 | Back alignment and structure |
|
| >pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195 | Back alignment and structure |
|
| >pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178 | Back alignment and structure |
|
| >pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188 | Back alignment and structure |
|
| >pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178 | Back alignment and structure |
|
| >pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193 | Back alignment and structure |
|
| >pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178 | Back alignment and structure |
|
| >pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180 | Back alignment and structure |
|
| >pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179 | Back alignment and structure |
|
| >pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182 | Back alignment and structure |
|
| >pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191 | Back alignment and structure |
|
| >pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178 | Back alignment and structure |
|
| >pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177 | Back alignment and structure |
|
| >pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | Back alignment and structure |
|
| >pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178 | Back alignment and structure |
|
| >pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192 | Back alignment and structure |
|
| >pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196 | Back alignment and structure |
|
| >pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184 | Back alignment and structure |
|
| >pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204 | Back alignment and structure |
|
| >pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187 | Back alignment and structure |
|
| >pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177 | Back alignment and structure |
|
| >pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178 | Back alignment and structure |
|
| >pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176 | Back alignment and structure |
|
| >pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184 | Back alignment and structure |
|
| >pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184 | Back alignment and structure |
|
| >pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185 | Back alignment and structure |
|
| >pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192 | Back alignment and structure |
|
| >pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192 | Back alignment and structure |
|
| >pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192 | Back alignment and structure |
|
| >pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192 | Back alignment and structure |
|
| >pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180 | Back alignment and structure |
|
| >pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179 | Back alignment and structure |
|
| >pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194 | Back alignment and structure |
|
| >pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180 | Back alignment and structure |
|
| >pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188 | Back alignment and structure |
|
| >pdb|1MH1|A Chain A, Small G-Protein Length = 186 | Back alignment and structure |
|
| >pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332 | Back alignment and structure |
|
| >pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203 | Back alignment and structure |
|
| >pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201 | Back alignment and structure |
|
| >pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193 | Back alignment and structure |
|
| >pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201 | Back alignment and structure |
|
| >pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193 | Back alignment and structure |
|
| >pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193 | Back alignment and structure |
|
| >pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195 | Back alignment and structure |
|
| >pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196 | Back alignment and structure |
|
| >pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192 | Back alignment and structure |
|
| >pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182 | Back alignment and structure |
|
| >pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190 | Back alignment and structure |
|
| >pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185 | Back alignment and structure |
|
| >pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183 | Back alignment and structure |
|
| >pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178 | Back alignment and structure |
|
| >pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | Back alignment and structure |
|
| >pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180 | Back alignment and structure |
|
| >pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182 | Back alignment and structure |
|
| >pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201 | Back alignment and structure |
|
| >pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188 | Back alignment and structure |
|
| >pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184 | Back alignment and structure |
|
| >pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207 | Back alignment and structure |
|
| >pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212 | Back alignment and structure |
|
| >pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205 | Back alignment and structure |
|
| >pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184 | Back alignment and structure |
|
| >pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196 | Back alignment and structure |
|
| >pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 249 bits (637), Expect = 2e-81
Identities = 85/127 (66%), Positives = 104/127 (81%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SF +V+ KW PE+ HHC TP +LV
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILV 265
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 266 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
Query: 313 LAALEPP 319
A L PP
Sbjct: 326 RAVLCPP 332
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 65/84 (77%), Positives = 72/84 (85%)
Query: 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 118
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCF 142
AG EDYDRLRPLSYPQTDVFL+CF
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICF 234
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 8e-10
Identities = 41/55 (74%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 2e-80
Identities = 57/128 (44%), Positives = 85/128 (66%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
++DTAGQ+DYDRLRPL YP V L+CF V SP+SF+N+ +W PE+ H C+K P ++V
Sbjct: 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV 144
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR+D + KL +N +P+++ +G+++A+ + AV Y+ECSA + VF EA
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
Query: 313 LAALEPPE 320
AL
Sbjct: 205 EVALSSRG 212
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 9e-54
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
++++K V+VGDG GKT LL+ + FP Y PTVF+ Y V + + G+P L ++DTA
Sbjct: 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTA 90
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQ+DYDRLRPL YP V L+CF
Sbjct: 91 GQDDYDRLRPLFYPDASVLLLCF 113
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-28
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
++++K V+VGDG GKT LL+ + FP Y PTVF+ Y V + + G+P L +
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHI 86
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 1e-79
Identities = 67/131 (51%), Positives = 90/131 (68%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H C P +LV
Sbjct: 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILV 135
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ DLR D +LA+ KQ+P+ + G +A ++A Y+ECSA T++G++ VF+ A
Sbjct: 136 ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195
Query: 313 LAALEPPEPPK 323
AAL+ +
Sbjct: 196 RAALQKRYGSQ 206
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 173 bits (439), Expect = 3e-53
Identities = 52/83 (62%), Positives = 63/83 (75%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+M K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTA
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDYDRLRPLSYP TDV L+CF
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCF 104
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-28
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
M K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELAL 77
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 238 bits (608), Expect = 8e-79
Identities = 68/125 (54%), Positives = 90/125 (72%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 135
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR+D T +LAK KQ+P+ E+G +A + A Y+ECSA T++G++ VF+ A
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 195
Query: 313 LAALE 317
A L+
Sbjct: 196 RAGLQ 200
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 1e-50
Identities = 52/87 (59%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 58 ARTMQTI--KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 115
M I K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 18 GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELAL 77
Query: 116 FDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+DTAGQEDYDRLRPLSYP TDV L+CF
Sbjct: 78 WDTAGQEDYDRLRPLSYPDTDVILMCF 104
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 8e-26
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELAL 77
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 237 bits (606), Expect = 2e-78
Identities = 78/131 (59%), Positives = 98/131 (74%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L DTAGQ+++D+LRPL Y TD+FL+CFSVVSPSSF+NV EKWVPEI HC K P +LV
Sbjct: 71 QLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILV 130
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GTQ DLRED L +L K K+KP+ E + LA+E+KA Y+ECSALTQK LK VFD AI
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
Query: 313 LAALEPPEPPK 323
+A ++ + +
Sbjct: 191 VAGIQYSDTQQ 201
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 4e-54
Identities = 52/95 (54%), Positives = 69/95 (72%)
Query: 48 GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG 107
GEP G + +KCV+VGDGAVGKT L++SYTTN +P+EY+PT FDN++ V +
Sbjct: 5 GEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVD 64
Query: 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
G P L L DTAGQ+++D+LRPL Y TD+FL+CF
Sbjct: 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCF 99
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-29
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ +KCV+VGDGAVGKT L++SYTTN +P+EY+PT FDN++ V + G P L L
Sbjct: 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQL 72
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 4e-78
Identities = 62/146 (42%), Positives = 89/146 (60%), Gaps = 13/146 (8%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P +LV
Sbjct: 60 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D L I+ QGE+L K++ A Y+ECS+ TQ+ +K VFD AI
Sbjct: 120 GTKLDLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175
Query: 313 LAALEPPEP---------PKKRKCVL 329
L+PP ++ C +
Sbjct: 176 KVVLQPPRRKEVPRRRKNHRRSGCSI 201
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 2e-57
Identities = 52/83 (62%), Positives = 66/83 (79%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G+ LGL+DTA
Sbjct: 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDY RLRPLSY D+F++ F
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAF 88
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 9e-32
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G+ LGL
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGL 61
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 236 bits (603), Expect = 6e-78
Identities = 86/124 (69%), Positives = 104/124 (83%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Query: 313 LAAL 316
A L
Sbjct: 201 RAVL 204
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 173 bits (439), Expect = 3e-53
Identities = 68/87 (78%), Positives = 74/87 (85%)
Query: 56 NFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 115
N Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
Query: 116 FDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+DTAGQEDYDRLRPLSYPQTDVFL+CF
Sbjct: 83 WDTAGQEDYDRLRPLSYPQTDVFLICF 109
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 5e-28
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 6e-77
Identities = 54/125 (43%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 138
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198
Query: 312 ILAAL 316
LA +
Sbjct: 199 TLACV 203
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 5e-51
Identities = 39/79 (49%), Positives = 49/79 (62%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+G
Sbjct: 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YD +RPLSYP +D L+CF
Sbjct: 89 YDNVRPLSYPDSDAVLICF 107
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-26
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 8e-77
Identities = 90/132 (68%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYPQTDV L+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 56 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
Query: 313 LAALEPPEPPKK 324
A L PP P KK
Sbjct: 176 RAVLCPP-PVKK 186
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 1e-47
Identities = 66/83 (79%), Positives = 73/83 (87%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDYDRLRPLSYPQTDV L+CF
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICF 84
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 3e-25
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 57
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 2e-76
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P +LV
Sbjct: 59 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV 118
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D + PI+ QGE+L K + A Y+ECS+ +Q+ +K VFD AI
Sbjct: 119 GTKLDLRDDKQFF--IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176
Query: 313 LAALEP 318
L+P
Sbjct: 177 RVVLQP 182
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-53
Identities = 55/83 (66%), Positives = 67/83 (80%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTA
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDY+RLRPLSY DVF++ F
Sbjct: 65 GQEDYNRLRPLSYRGADVFILAF 87
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 5e-28
Identities = 36/55 (65%), Positives = 44/55 (80%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL
Sbjct: 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGL 60
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 5e-76
Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPL Y +D L+CF + P + ++ +KW EI +C T LL+
Sbjct: 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEA 311
G + DLR D TL +L+ KQ PIS+EQG +AK+L A Y+E SA T +K + ++F A
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197
Query: 312 ILAALEPPEPPKKRKCV 328
+ L P P ++ V
Sbjct: 198 SMLCLNKPSPLPQKSPV 214
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 2e-48
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ K V+VGD GKT +L + +P YVPTVF+NY + + L L+DT+
Sbjct: 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
G YD +RPL Y +D L+CF
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCF 106
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ K V+VGD GKT +L + +P YVPTVF+NY + + L L
Sbjct: 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSL 79
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 1e-75
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 10/131 (7%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQE+YDRLRPLSY +DV L+CF+V + +SF+N+ KW PEI H+ +LV
Sbjct: 74 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 133
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G ++DLR+D ++ ++G+ L ++L V Y+E S++ + GL VF++++
Sbjct: 134 GLKVDLRKD----------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183
Query: 313 LAALEPPEPPK 323
PK
Sbjct: 184 DCIFSNKPVPK 194
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 4e-56
Identities = 46/82 (56%), Positives = 63/82 (76%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L+DTAG
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE+YDRLRPLSY +DV L+CF
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCF 102
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 6e-31
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 75
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 1e-74
Identities = 54/125 (43%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 58 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 117
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177
Query: 312 ILAAL 316
LA +
Sbjct: 178 TLACV 182
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-48
Identities = 39/79 (49%), Positives = 49/79 (62%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+G
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YD +RPLSYP +D L+CF
Sbjct: 68 YDNVRPLSYPDSDAVLICF 86
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-25
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 59
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-73
Identities = 89/126 (70%), Positives = 104/126 (82%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYP TDVFL+CFSVV+P+SF+NVKE+WVPE+ + PFLL+
Sbjct: 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 128
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GTQIDLR+D TL +L K+KPI EQG+KLAKE+ A YVECSALTQKGLK VFDEAI
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188
Query: 313 LAALEP 318
+A L P
Sbjct: 189 IAILTP 194
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 3e-50
Identities = 62/81 (76%), Positives = 71/81 (87%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL+DTAGQ
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
EDYDRLRPLSYP TDVFL+CF
Sbjct: 77 EDYDRLRPLSYPMTDVFLICF 97
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-27
Identities = 38/54 (70%), Positives = 45/54 (83%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 70
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-23
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQ++Y L +++ +SV S SF+ ++ ++ H + P +LVG
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVG 136
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ DL ++ + +G+KLA+ ++E SA + + +F ++
Sbjct: 137 NKADLSP------------EREVQAVEGKKLAESWG-ATFMESSARENQLTQGIF-TKVI 182
Query: 314 AALE--PPEPPKKRKCVLL 330
+ ++R+C L+
Sbjct: 183 QEIARVENSYGQERRCHLM 201
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 7e-21
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
++ K V++G VGKT L + +F Y PTV + Y+ V +G + + L L DTAG
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG 81
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
Q++Y L +++ +
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVY 103
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
++ K V++G VGKT L + +F Y PTV + Y+ V +G + + L
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHL 74
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 2e-22
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + T F +Y PT+ D Y + + P L + DTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
E + +R L F++ +
Sbjct: 61 TEQFASMRDLYIKNGQGFILVY 82
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 9e-21
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAG E + +R L F++ +S+V+ SF+++K +I +K P +LVG
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++DL ++ +S +G LA+E ++E SA ++ + +F E
Sbjct: 116 NKVDLES------------EREVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAE 159
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 7e-13
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M+ K VV+G G VGK+ L + + T F +Y PT+ D Y + + P L
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVL 53
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 8e-22
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L + DTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
E + +R L F + +
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVY 82
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 4e-20
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAG E + +R L F + +S+ + S+F ++++ +I + P +LVG
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + ++ + EQG+ LA++ ++E SA ++ + +F +
Sbjct: 116 NKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 8e-13
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCML 53
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-21
Identities = 35/82 (42%), Positives = 43/82 (52%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG G VGK+ L I N F E PT+ D+Y V+I GE L + DTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE+Y +R + FL F
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVF 82
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 2e-19
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
DTAGQE+Y +R + FL F++ + SFE++ + + +I P +LVG
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + Q + LA+ + Y+E SA T++G+++ F
Sbjct: 116 NKSDL-------------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYT 158
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 1e-12
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M K VVVG G VGK+ L I N F E PT+ D+Y V+I GE L
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLL 53
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-21
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQE+Y +R + FL F++ + SFE++ + +I + P +LVG
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF----- 308
+ DL + + +Q + LA+ + ++E SA T++G+ + F
Sbjct: 117 NKCDL-------------PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVR 162
Query: 309 -----DEAILAALEPPEPPKKRKCVLL 330
E + + + K KCV++
Sbjct: 163 EIRKHKEKMSKDGKKKKKKSKTKCVIM 189
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-20
Identities = 34/78 (43%), Positives = 42/78 (53%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + FL F
Sbjct: 66 SAMRDQYMRTGEGFLCVF 83
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 54
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-21
Identities = 36/82 (43%), Positives = 44/82 (53%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE+Y +R + FL F
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVF 100
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 4e-19
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
DTAGQE+Y +R + FL F++ + SF ++ + +I P +LVG
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVG 133
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + +Q +LAK + ++E SA T++G+++ F
Sbjct: 134 NKCDL-------------PTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYT 176
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 25/53 (47%), Positives = 29/53 (54%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 71
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-21
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 117
+ + T K VVVGDG VGK+ L I + F +Y PT+ D+Y I + L + D
Sbjct: 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLD 72
Query: 118 TAGQEDYDRLRPLSYPQTDVFLVCF 142
TAGQE++ +R D FL+ +
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVY 97
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 5e-19
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
DTAGQE++ +R D FL+ +SV +SFE+V + I + P +LV
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVA 130
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
++DL + ++ +QG+++A + + Y+E SA NV D+
Sbjct: 131 NKVDLMH------------LRKVTRDQGKEMATKYN-IPYIETSAKDPPL--NV-DKT 172
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 9e-13
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ T K VVVGDG VGK+ L I + F +Y PT+ D+Y I + L
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAIL 68
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 4e-21
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
++ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTA
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDY +R + + FL F
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVF 83
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 2e-19
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQEDY +R + + FL FS+ SF + + +I + PFLLVG
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + ++ +S E+ + A + V YVE SA T+ + VF +
Sbjct: 117 NKSDLED------------KRQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFD 160
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 4e-12
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE +
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 54
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 5e-21
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
++ K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L DTAGQ
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
++Y + +++ +
Sbjct: 65 DEYSIFPQTYSIDINGYILVY 85
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-20
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQ++Y + +++ +SV S SFE +K ++ + P +LVG
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ IS+E+G+ LA+ ++E SA + +VF
Sbjct: 119 NKKDLHM------------ERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRR 162
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-11
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
++ K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHL 56
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 7e-21
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
+ V G G VGK+ L++ + F Y+PTV D Y + TL + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 125 DRLRPLSYPQTDVFLVCF 142
++ LS + F++ +
Sbjct: 65 PAMQRLSISKGHAFILVY 82
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 2e-20
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH---CQKTPFLLV 252
DT G + ++ LS + F++ +S+ S S E +K +I + P +LV
Sbjct: 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + D + + + E LA+ K ++E SA +K +F E
Sbjct: 116 GNKCDESP------------SREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQE 160
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 4e-11
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ V G G VGK+ L++ + F Y+PTV D Y + TL
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTL 53
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 9e-21
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 18/119 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
D G + D + FS+ SF+ V + + + P +LVG
Sbjct: 73 DEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVG 126
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQ + + I + KL+ +LK Y E A ++ VF +
Sbjct: 127 TQDAISA----------ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 6e-18
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 56 NFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 115
N +K +VG+ + GK+ L+ Y T + E P + +++ G+ Y L +
Sbjct: 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLI 71
Query: 116 FDTAGQEDY 124
D G +
Sbjct: 72 RDEGGPPEL 80
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-10
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+K +VG+ + GK+ L+ Y T + E P + +++ G+ Y L
Sbjct: 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLL 69
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 1e-20
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAG
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QEDY +R + + FL F
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVF 97
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 2e-19
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQEDY +R + + FL FS+ SF + + +I + PFLLVG
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVG 130
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + ++ +S E+ + A++ V YVE SA T+ + VF +
Sbjct: 131 NKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFD 174
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 7e-12
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE +
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 68
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 1e-20
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 31/152 (20%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQKTPFLLVG 253
DT G + ++ LS + F++ FSV S S E + K + +I + P +LVG
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ D Q+ + + + +A+E K ++E SA +K +F E
Sbjct: 122 NKCDE-------------TQREVDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQELLT 167
Query: 311 ------------AILAALEPPEPPKKRKCVLL 330
+ + K KC L+
Sbjct: 168 LETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM 199
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 1e-20
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF 69
Query: 125 DRLRPLSYPQTDVFLVCF 142
++ LS + F++ F
Sbjct: 70 PAMQRLSISKGHAFILVF 87
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTL 58
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-20
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAG
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QEDY +R + + FL F
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVF 93
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 3e-20
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQEDY +R + + FL FS+ SF + + +I + PFLLVG
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVG 126
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ DL + ++ +S E+ + A++ V YVE SA T+ + VF +
Sbjct: 127 NKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMR 173
Query: 311 AILAALEPPEPP-------------KKRKCVLL 330
I A + +C +L
Sbjct: 174 EIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-12
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE +
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 64
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 2e-20
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VVVG G VGK+ L I + + F S+Y PT+ D+Y + G P L + DTAGQE++
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R FL+ F
Sbjct: 71 GAMREQYMRAGHGFLLVF 88
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 2e-20
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQE++ +R FL+ F++ SF V + +I P +LVG
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ DL Q+ + + V Y E SA + + F++
Sbjct: 122 NKADLES------------QRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVR 168
Query: 311 AILAALEPPEPP 322
A+ E PP
Sbjct: 169 AVRKYQEQELPP 180
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-11
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VVVG G VGK+ L I + + F S+Y PT+ D+Y + G P L
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARL 59
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 3e-20
Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 63/249 (25%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAGQ 121
K V++G+ +VGK+ +++ T + F T+ F Y V + +
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTY--VVNLNDINIKNNSNNEKNN 66
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
+ T+ N+ NI+ +
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDI----------------------------- 97
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241
W DTAGQE Y + PL Y +V F + + ++ + K WV ++
Sbjct: 98 ------W-------DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLK 143
Query: 242 HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301
+LV +ID + + + +K A++ + +++ SA T
Sbjct: 144 ISS-NYIIILVANKIDKN-------------KFQVDILEVQKYAQDNN-LLFIQTSAKTG 188
Query: 302 KGLKNVFDE 310
+KN+F
Sbjct: 189 TNIKNIFYM 197
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-11
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 22/120 (18%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTI 64
K V++G+ +VGK+ +++ T + F T+ G +F
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTI-----------------GASFC-----T 46
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
V + D + ++ + N ++DTAGQE Y
Sbjct: 47 YVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERY 106
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-19
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
D Q+ L D +++ +SV SFE E ++ P +LVG
Sbjct: 55 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVG 113
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + +S ++G A K++E SA ++ +F+
Sbjct: 114 NKSDLVR------------SREVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEG 157
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 6e-18
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K +++G VGK+ L + Y ++++ GE +L ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
L D +++ +
Sbjct: 63 RWLPGHCMAMGDAYVIVY 80
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 3e-09
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K +++G VGK+ L + Y ++++ GE +L
Sbjct: 4 KVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASL 51
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-19
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+ ++G GK+ L + + T +F SEY P + D Y+ + +P L + DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 124 YDRLRPLSYPQTDVFLVCF 142
R FLV +
Sbjct: 82 P-RNCERYLNWAHAFLVVY 99
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 7e-17
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT----PFLL 251
DTA + R FLV +SV S SF++ ++ + H ++T P LL
Sbjct: 75 DTADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
+G ++D+ + + ++ +G LA + E SA ++V
Sbjct: 133 LGNKLDMAQ------------YRQVTKAEGVALAGRFG-CLFFEVSACLD--FEHV-QHV 176
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ ++G GK+ L + + T +F SEY P + D Y+ + +P L
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL 71
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
+ G+ ++ L D +L+ +S+ +SFE E ++ + P +LVG
Sbjct: 96 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVG 152
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + +S +G A K++E SA Q +K +F+
Sbjct: 153 NKSDLVR------------CREVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEG 196
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-16
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFD- 117
+ V++G+ VGK+ L + S+ D Y T+M+ GE T+ L D
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 118 --TAGQEDYDRLRPLSYPQTDVFLVCF 142
G+ ++ L D +L+ +
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVY 119
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ V++G+ VGK+ L + S+ D Y T+M+ GE T+
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI 89
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 5e-19
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+K + G VGK+ L++ + T +F EY PT+ Y I E ++ + DTAG
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QED R + F++ +
Sbjct: 86 QEDT-IQREGHMRWGEGFVLVY 106
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 8e-18
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQED R + F++ + + SFE V + + +LVG
Sbjct: 82 DTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVG 139
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
+ DL + +S E+GEKLA EL + ECSA T +G N+ E
Sbjct: 140 NKADLDH------------SRQVSTEEGEKLATELA-CAFYECSACTGEG--NI-TEI 181
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+K + G VGK+ L++ + T +F EY PT+ Y I E ++
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSM 78
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-18
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+M + V++GD VGKT L + + + D Y T+ + GE TL + DT
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 120 GQEDYDR--LRPLSYPQTDVFLVCF 142
E D+ + +++ +
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVY 85
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 4e-18
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 196 DTAGQEDYDR--LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLL 251
DT E D+ + +++ +S+ SFE+ E ++ TH P +L
Sbjct: 58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIIL 116
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DL + +S E+G A K++E SA Q + +F+
Sbjct: 117 VGNKADLAR------------CREVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEG 162
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 9e-12
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M + V++GD VGKT L + + + D Y T+ + GE TL
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTL 54
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-18
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 196 DTAGQEDYD-RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLV 252
D Q D LR D FL+ FSV SF V E + + P +LV
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILV 136
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + +S E+G LA L K++E SA + +F+
Sbjct: 137 GNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEG 181
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 7e-18
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQED 123
K ++VG+ VGK+ L ++ + S + P D Y +M+ E TL ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 124 YD-RLRPLSYPQTDVFLVCF 142
LR D FL+ F
Sbjct: 85 AGGWLRDHCLQTGDAFLIVF 104
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTL 53
K ++VG+ VGK+ L ++ + S + P D Y +M+ E TL
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTL 74
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-18
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 118
R++ ++ V+GD GK+ L+ + T + T + Y +++ G+ + + + +
Sbjct: 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREE 61
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCF 142
AG D D + F
Sbjct: 62 AGAPDA-----KFSGWADAVIFVF 80
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-13
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 24/122 (19%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT----PFLL 251
+ AG D D + FS+ +SF+ V +++ + L
Sbjct: 60 EEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALAL 113
Query: 252 VGTQ--IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
VGTQ I + + + L ++K Y E A + VF
Sbjct: 114 VGTQDRISASS------------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQ 161
Query: 310 EA 311
E
Sbjct: 162 EV 163
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ ++ V+GD GK+ L+ + T + T + Y +++ G+ + +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLV 56
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 2e-18
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 196 DTAGQEDYD-RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLV 252
D Q D L+ D FL+ FSV SF V E + + P +LV
Sbjct: 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + +S E+G LA L K++E SA + +F+
Sbjct: 116 GNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEG 160
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 3e-17
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQED 123
K ++VG+ VGK+ L ++ + + D Y +M+ E TL ++D Q D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 124 YD-RLRPLSYPQTDVFLVCF 142
L+ D FL+ F
Sbjct: 64 AGGWLQDHCLQTGDAFLIVF 83
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 8e-10
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTL 53
K ++VG+ VGK+ L ++ + + D Y +M+ E TL
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTL 53
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 3e-17
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-----PFL 250
DTAGQE + L Y D ++ + V + SSFEN+K W E H PF+
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFV 122
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++G +ID E +K +S + ++LAK L + SA + F+E
Sbjct: 123 ILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEE 171
Query: 311 AILAALE 317
+AL+
Sbjct: 172 IARSALQ 178
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 8e-12
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
+K +++GD VGKT L+ Y +K+ +Y T+ F VTV G + T+ ++DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV-DGDKVATMQVWDTAG 67
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE + L Y D ++ +
Sbjct: 68 QERFQSLGVAFYRGADCCVLVY 89
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GD VGKT L+ Y +K+ +Y T+
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI 41
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 3e-17
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
+ G+ ++ L D +L+ +S+ +SFE E ++ + P +LVG
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ DL + +S +G A K++E SA Q +K +F+
Sbjct: 122 NKSDLVR------------XREVSVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVR 168
Query: 311 AILAALEPPEPPKKRK 326
+ + E ++R
Sbjct: 169 QVRLRRDSKEKNERRL 184
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVFDNYAVTVMIGGEPYTLGLF-- 116
M + V++G+ VGK+ L + + D Y T+M+ GE T+ L
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63
Query: 117 -DTAGQEDYDRLRPLSYPQTDVFLVCF 142
+ G+ ++ L D +L+ +
Sbjct: 64 WENKGENEW--LHDHCMQVGDAYLIVY 88
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-09
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVFDNYAVTVMIGGEPYTL 53
M + V++G+ VGK+ L + + D Y T+M+ GE T+
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI 58
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 9e-17
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255
DTAGQE++D + Y ++ FS SFE + W ++ P LV +
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNK 118
Query: 256 IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315
IDL + I E+ E LAK LK +++ S + VF
Sbjct: 119 IDLLD------------DSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKH 165
Query: 316 LE 317
L+
Sbjct: 166 LQ 167
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-12
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
IK VVVG+GAVGK+ ++ Y F +Y T+ D + + E L L+DTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 123 DY 124
++
Sbjct: 66 EF 67
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-07
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
IK VVVG+GAVGK+ ++ Y F +Y T+ D + + E L
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 56
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 1e-15
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFL 250
DTAGQE + LR Y +D L+ FSV SF+N+ W E ++ + PF+
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFV 120
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++G +ID+ E + +S E+ + ++ Y E SA + F+E
Sbjct: 121 ILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167
Query: 311 AILAALEPPE 320
A+ L +
Sbjct: 168 AVRRVLATED 177
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-13
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GDG VGK+ L+ Y TNKF ++ T+ + + + G T+ ++DTAGQE
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 3e-08
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
K +++GDG VGK+ L+ Y TNKF ++ T+ + + + G T+
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-15
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + LR Y Q ++ F
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMF 95
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-15
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255
DTAGQE + LR Y Q ++ F V S +++NV W ++ C+ P +L G +
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNK 128
Query: 256 IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+D+++ + ++ K ++Y + SA + + F
Sbjct: 129 VDIKDRKVK--------------AKSIVFHRK-KNLQYYDISAKSNYNFEKPF 166
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
K V+VGDG GKT + + T +F +YV T+ + + + P
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-14
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
DTAGQE R R ++ Y T +V + V S SF NVK +W+ EI +C +LV
Sbjct: 64 DTAGQE---RFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + D E +K + E K A ++ ++ E SA ++ +F+
Sbjct: 120 GNKNDDPE------------RKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNC 164
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-12
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+ LL+ + N F Y+ T+ D TV I GE L ++DTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 123 DY 124
+
Sbjct: 70 RF 71
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+ LL+ + N F Y+ T+
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI 42
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE L+ + Y ++ F V S + +N+ +WV E P ++
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCAN 125
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+ID++ ++ IS + ++ K K +Y E SA T F
Sbjct: 126 KIDIKN------------RQKISKKLVMEVLKG-KNYEYFEISAKTAHNFGLPF 166
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT--VFDNYAVTVMIGGEPYTLGLFDTAG 120
T K ++GDG VGKT + +F Y T ++ + G ++DTAG
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE L+ + Y ++ F
Sbjct: 71 QEKKAVLKDVYYIGASGAILFF 92
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 1e-14
Identities = 18/134 (13%), Positives = 48/134 (35%), Gaps = 18/134 (13%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+D GQE ++ V+++ + N W+ I + K+P ++V
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVV 156
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ID I ++ + ++ ++ S G++++ +++
Sbjct: 157 MNKIDENP------------SYNIEQKKINERFPAIEN-RFHRISCKNGDGVESIA-KSL 202
Query: 313 LAALEPPEPPKKRK 326
+A+ P+
Sbjct: 203 KSAVLHPDSIYGTP 216
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-08
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT---------VFDNYAVTVMIGGEPY 111
+Q IK ++GDG GKT LL F + T + + +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 112 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+D GQE ++ V+++
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLL 129
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE + L P+ Y + ++ + + SF +K KWV E+ H + + G
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGN 136
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + + + + ++ A+ + VE SA ++ +F + I
Sbjct: 137 KCDLSD------------IREVPLKDAKEYAESIG-AIVVETSAKNAINIEELF-QGISR 182
Query: 315 ALEPPEPPK 323
+ P +P +
Sbjct: 183 QIPPLDPHE 191
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 8e-11
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
++ +K ++GD VGK+ ++ + + F PT+ TV G E + ++DTA
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 120 GQEDY 124
GQE +
Sbjct: 81 GQERF 85
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
++ +K ++GD VGK+ ++ + + F PT+
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI 56
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-14
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ + + D L+ + V SF N++ +WV I + P +L
Sbjct: 83 DTAGQE---RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIML 138
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+R+ A QK + GEKLA + E SA +
Sbjct: 139 VGNKADIRDTAA------TEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLH 190
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-12
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K V+ GD AVGK+ L+ N+F T+ ++ + T+++ GE L L+DTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 123 DY 124
+
Sbjct: 89 RF 90
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+ GD AVGK+ L+ N+F T+
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R ++ Y ++ + + +F+++ KW+ I + + LL
Sbjct: 81 DTAGQE---RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLL 136
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG ++D + I+ +QGEK A+++ +++ E SA + +F +
Sbjct: 137 VGNKLDCET------------DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-12
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
++ +++G VGKT L+ +T + F TV ++ + TV + G+ L ++DTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 123 DY 124
+
Sbjct: 87 RF 88
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
++ +++G VGKT L+ +T + F TV
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV 59
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-14
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAG E + L P + V +V + + + +SF+ KW+ ++ +LVG
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGN 129
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + ++ +S E+GE+ AKEL V ++E SA +K +F + A
Sbjct: 130 KTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLF-RRVAA 175
Query: 315 ALEPPEPPKKR 325
AL E + R
Sbjct: 176 ALPGMESTQDR 186
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 9e-11
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 48 GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMI 106
G + G +F ++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ +
Sbjct: 1 GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 60
Query: 107 GGEPYTLGLFDTAGQEDYDRLRPL--SY 132
L L+DTAG E R R L SY
Sbjct: 61 EDRTVRLQLWDTAGLE---RFRSLIPSY 85
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V +G+ +VGKT L+ + + F + Y T+
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 49
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 4e-14
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE + L P + V +V + + + +SF KW+ ++ T +LVG
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGN 127
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + ++ +S E+GE+ AKEL V ++E SA +K +F + A
Sbjct: 128 KTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-RRVAA 173
Query: 315 AL 316
AL
Sbjct: 174 AL 175
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-10
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 56 NFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLG 114
+F ++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L
Sbjct: 7 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 66
Query: 115 LFDTAGQEDYDRLRPL--SY 132
L+DTAGQE R R L SY
Sbjct: 67 LWDTAGQE---RFRSLIPSY 83
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 5e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V +G+ +VGKT L+ + + F + Y T+
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 47
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y + ++ + + SSF +V W+ ++ + LL
Sbjct: 84 DTAGQE---RFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLL 139
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G + DL E + +S + + LA+ + +E SA ++ F
Sbjct: 140 IGNKSDLSE------------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-12
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V+VGD +VGKTC++ + T F T+ D T+ I G+ L ++DTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 123 DY 124
+
Sbjct: 90 RF 91
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGD +VGKTC++ + T F T+
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-13
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + L P+ Y ++ ++ + + SF+ VK WV E+ +VG
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGN 119
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+IDL + ++ +S ++ E A+ + K+ SA KG++ +F +
Sbjct: 120 KIDLEK------------ERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLD 162
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-11
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++G+G VGKT L++ Y NKF +++ T+ + IGG+ L ++DTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 123 DY 124
+
Sbjct: 67 RF 68
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-06
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++G+G VGKT L++ Y NKF +++ T+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL 39
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 3e-13
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE Y L P+ Y ++ F V + +SFE K KWV E+ L G
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGN 125
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + + ++ E + A+E + ++E SA T +K +F I
Sbjct: 126 KSDLLD------------ARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIF-YEIAR 171
Query: 315 ALEPPEPPK 323
L +P +
Sbjct: 172 RLPRVQPTE 180
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-10
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++GD GK+ L++ + ++F T+ ++ T+ + ++DTAGQE
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 123 DY 124
Y
Sbjct: 73 RY 74
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-06
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD GK+ L++ + ++F T+
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI 45
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-13
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFL 250
DTAGQE R R L+ + FL+ F + S SF NV W+ ++ + C+ +
Sbjct: 90 DTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 145
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
L+G + DL + Q+ ++ Q +LA + + Y E SA T + ++ +
Sbjct: 146 LIGNKADLPD------------QREVNERQARELADKYG-IPYFETSAATGQNVEKAVET 192
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-11
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF------ 116
IK + +GD VGKT L YT NKF +++ TV D V+ +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 117 ----DTAGQEDY 124
DTAGQE +
Sbjct: 86 LQLWDTAGQERF 97
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 58
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 4e-13
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE Y L P+ Y +V + + + SF K WV E+ L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGN 119
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ + F++ + A + + ++E SA T + +F
Sbjct: 120 KADLAN------------KRAVDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMA 162
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 4e-11
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
+ K V++G+ AVGK+ L++ + +F T+ TV + ++DTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 120 GQEDY 124
GQE Y
Sbjct: 64 GQERY 68
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+ K V++G+ AVGK+ L++ + +F T+
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI 39
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-13
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-----PFL 250
DTAGQE + L Y D ++ F V +P++F+ + W E PF+
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFV 121
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++G +IDL + ++ ++ + + Y E SA ++ F
Sbjct: 122 VLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168
Query: 311 AILAALE 317
AL+
Sbjct: 169 IARNALK 175
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 9e-13
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGKT L+ Y KF ++Y T+ D VM+ T+ ++DTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ L Y D ++ F
Sbjct: 69 RFQSLGVAFYRGADCCVLVF 88
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
+K +++GD VGKT L+ Y KF ++Y T+ D VM+ T+
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM 59
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-13
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
T+K +++G+ VGK+ LL+ +T + F E T+ D T+ + G L ++DTAGQ
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 122 EDY 124
E +
Sbjct: 75 ERF 77
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 3e-12
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP--FLLVG 253
DTAGQE + L P Y ++ + V +F + W+ E+ +C + +LVG
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVG 128
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ID + + + +G K A++ + ++E SA T G++ F+E
Sbjct: 129 NKIDK-------------ENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEE 171
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
T+K +++G+ VGK+ LL+ +T + F E T+
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATI 48
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-13
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y FL+ + + + SF V+ W +I T+ +L
Sbjct: 77 DTAGQE---RYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVIL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DL + ++ + E G +LA +L ++ E SA +K VF+
Sbjct: 133 VGNKCDLED------------ERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFER 178
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ +VGKT L Y + F +V TV ++ V TV + L ++DTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 123 DY 124
Y
Sbjct: 83 RY 84
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV 55
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 6e-13
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAG E + L P+ Y + ++ + + +F +K WV E+ H + G
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGN 119
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + + + A + +VE SA + +F E
Sbjct: 120 KCDLTD------------VREVMERDAKDYADSIH-AIFVETSAKNAININELFIE 162
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 4e-11
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTA 119
++ +K ++GD VGK+ ++ + + F PT+ ++ TV E + ++DTA
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 120 GQEDYDRLRPL--SY 132
G E R R L Y
Sbjct: 64 GLE---RFRALAPMY 75
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 1e-06
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
++ +K ++GD VGK+ ++ + + F PT+
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI 39
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 6e-13
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y F++ + + + SF V+ W +I T+ +L
Sbjct: 78 DTAGQE---RYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVIL 133
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+ E ++ + E+G+ LA++L + E SA ++ F+
Sbjct: 134 VGNKCDMEE------------ERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFER 179
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-12
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ +VGKT L Y + F +V TV ++ V TV + L ++DTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 123 DY 124
Y
Sbjct: 84 RY 85
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV 56
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 7e-13
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFL 250
DTAG E R R L+ + FL+ F + + SF NV W+ ++ H + +
Sbjct: 76 DTAGLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIV 131
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
L G + DL + Q+ + E+ +LA++ + Y E SA + + +
Sbjct: 132 LCGNKSDLED------------QRAVKEEEARELAEKYG-IPYFETSAANGTNISHAIEM 178
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-----------FDNYAVTVMIGGEPYT 112
IK + +GD VGKT +L YT KF S+++ TV N + G+
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 113 LGLFDTAGQEDY 124
L L+DTAG E +
Sbjct: 72 LQLWDTAGLERF 83
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT +L YT KF S+++ TV
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV 44
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-12
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y +V + V SF NVK +W+ EI + + LLVG
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGN 146
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL +K + + ++ A L + ++E SA ++ F
Sbjct: 147 KCDLTT------------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 189
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-12
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ + + + Y+ T+ D T+ + G+ L ++DTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 123 DY 124
+
Sbjct: 94 RF 95
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ + + + Y+ T+
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI 66
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-12
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y ++ + + + SF+N++ W+ I H ++
Sbjct: 63 DTAGQE---RFRTITTAYYRGAMGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMI 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G + D+ + ++ +S E+GEKLA + +K++E SA ++N F
Sbjct: 119 LGNKCDVND------------KRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFT 164
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 123 DY 124
+
Sbjct: 69 RF 70
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-07
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGKTC+L ++ + F S ++ T+
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI 41
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-12
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +V+GD VGKTCL + +FP T+ D V I GE + L+DTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 123 DY 124
+
Sbjct: 81 RF 82
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 26/123 (21%)
Query: 196 DTAGQEDYDRLRPLS-----YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT--P 248
DTAGQE R R S Y + + + + +SF ++ W+ E H P
Sbjct: 75 DTAGQE---RFRK-SMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIP 129
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DLR + + +K A + E SA +V
Sbjct: 130 RILVGNKCDLRS------------AIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHV- 175
Query: 309 DEA 311
+
Sbjct: 176 EAI 178
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +V+GD VGKTCL + +FP T+
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI 53
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-12
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLL 251
DTAGQE R R ++ Y L+ + V + +SF+N++ W+ EI + Q +L
Sbjct: 66 DTAGQE---RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALML 121
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G ++D ++ + E GEKLAKE + ++E SA T + F
Sbjct: 122 LGNKVDSAH------------ERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTA 167
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-11
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
K ++VGD VGKTCLL+ + F + ++ TV D + + G L ++DTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 122 EDY 124
E +
Sbjct: 71 ERF 73
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-06
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTV 36
K ++VGD VGKTCLL+ + F + ++ TV
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV 44
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-12
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +V+G+ GK+CLL + KF + T+ + + + +GG+ L ++DTAGQE
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 124 Y 124
+
Sbjct: 72 F 72
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-12
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y L+ + + S ++ + W+ + + +L
Sbjct: 65 DTAGQE---RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIIL 120
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + ++F + + A+E + + ++E SALT + ++ F +
Sbjct: 121 CGNKKDLDA------------DREVTFLEASRFAQENE-LMFLETSALTGENVEEAFVQ 166
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-07
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +V+G+ GK+CLL + KF + T+
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI 43
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y +V + V SF NVK +W+ EI + + LLVG
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGN 129
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL +K + + ++ A L + ++E SA ++ F
Sbjct: 130 KCDLTT------------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 172
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-11
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ + + + Y+ T+ D T+ + G+ L ++DTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 123 DY 124
+
Sbjct: 77 RF 78
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 9e-07
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ + + + Y+ T+
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI 49
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y L+ + + ++ENV+ +W+ E+ H +L
Sbjct: 60 DTAGQE---RYRRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIML 115
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DLR + + ++ A++ + ++E SAL ++ F
Sbjct: 116 VGNKSDLRH------------LRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKN 161
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-12
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ + ++ + G+ ++DTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 124 Y 124
Y
Sbjct: 67 Y 67
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 38
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y + ++ + + SF + +W+ EI + +LVG
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGN 139
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+IDL E ++ +S ++ E+ ++ + Y+E SA ++ +F +
Sbjct: 140 KIDLAE------------RREVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLD 182
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-12
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++G+ VGKTCL+ +T FP T+ D TV I GE L ++DTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 123 DY 124
+
Sbjct: 87 RF 88
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++G+ VGKTCL+ +T FP T+
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI 59
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAG E R R ++ Y F++ + + + SF V+ W +I T+ LL
Sbjct: 63 DTAGLE---RYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLL 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+ + ++ +S E+G +LA L ++ E SA +K F+
Sbjct: 119 VGNKCDMED------------ERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFER 164
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-12
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++G+ +VGKT L Y + F +V TV D T+ + L ++DTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 123 DY 124
Y
Sbjct: 69 RY 70
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV 41
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +V+G GK+CLL + NKF + T+ + + V +GG+ L ++DTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 124 Y 124
+
Sbjct: 87 F 87
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-12
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y L+ + + S ++ ++ W+ + +L G
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGN 138
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ ++F + + A+E + + ++E SALT + ++ F +
Sbjct: 139 KKDLDP------------EREVTFLEASRFAQENE-LMFLETSALTGENVEEAFLK 181
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +V+G GK+CLL + NKF + T+
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI 58
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-12
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL +T KF ++ T+ + + + G+ L ++DTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 124 Y 124
+
Sbjct: 77 F 77
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 6e-12
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y L+ + + S++ ++ W+ + + T +L+G
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGN 128
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL Q+ +++E+ ++ A+E + ++E SA T + +++ F E
Sbjct: 129 KADLEA------------QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLE 171
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-07
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL +T KF ++ T+
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI 48
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y L+ + + +F ++ W+ + H +L+G
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGN 134
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ + E+GE A+E + ++E SA T ++ F
Sbjct: 135 KSDLES------------RRDVKREEGEAFAREHG-LIFMETSAKTACNVEEAFIN 177
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 3e-12
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ +T +F + T+ + A V I G+ L ++DTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 123 DY 124
+
Sbjct: 82 SF 83
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-07
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ +T +F + T+
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI 54
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-12
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAG E Y + Y L+ F + ++ V+ +W+ E+ H +LVG
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGN 138
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + + E+ A+ + ++E SAL ++ F+
Sbjct: 139 KSDLSQ------------AREVPTEEARMFAENNG-LLFLETSALDSTNVELAFET 181
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++G+ VGKT LL +T N+F + T+ + TVM+G ++DTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 123 DY 124
Y
Sbjct: 86 RY 87
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++G+ VGKT LL +T N+F + T+
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI 58
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-12
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y ++ + + +F N+K +W + H LL
Sbjct: 58 DTAGQE---RFRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+ + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 114 VGNKSDM-------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFT 158
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-12
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L ++DTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 123 DY 124
+
Sbjct: 64 RF 65
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-07
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GD VGK+CLL+ + +KF ++ T+
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI 36
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-12
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAG E R R ++ Y L+ + + ++ENV+ +W+ E+ H +L
Sbjct: 84 DTAGLE---RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIML 139
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DLR + + ++ A++ + ++E SAL ++ F
Sbjct: 140 VGNKSDLRH------------LRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQT 185
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ + ++ + G+ ++DTAG E
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 124 Y 124
Y
Sbjct: 91 Y 91
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 6e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 62
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 5e-12
Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255
D AG+E++ P Q ++L + + + + + W+ I +P +LVGT
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTH 121
Query: 256 IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKNVFDE 310
+D+ + + ++K + ++L + + + L +
Sbjct: 122 LDVSD---------EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTV---FDNYAVTVMIGG---EPYTLGL 115
+K ++VG+ GKT LL K TV ++ + I L +
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDW--PIQIRDKRKRDLVLNV 60
Query: 116 FDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+D AG+E++ P Q ++L +
Sbjct: 61 WDFAGREEFYSTHPHFMTQRALYLAVY 87
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTV 36
+K ++VG+ GKT LL K TV
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATV 37
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 6e-12
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 18/119 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI----THHCQKTPFLL 251
D GQ ++ L+ + + + SFEN++ W + + L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVAL 120
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG +IDL + I E+ + +E SA T + F +
Sbjct: 121 VGNKIDLEH------------MRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQK 166
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 4e-11
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPY-TLGLFDTAGQ 121
+K VV+GDGA GKT L + F +Y T+ D + + + G TL ++D GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 122 EDY 124
Sbjct: 67 TIG 69
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K VV+GDGA GKT L + F +Y T+
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI 39
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-12
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y ++ + V +F N+K +W + H LLVG
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGN 133
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ D+ + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 134 KSDM-------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFT 175
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-12
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L+DTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 123 DY 124
+
Sbjct: 81 RF 82
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GD VGK+CLL+ + +KF ++ T+
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI 53
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-12
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y + ++ + V SF VK W+ EI + LL
Sbjct: 63 DTAGQE---RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLL 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DL++ ++ + ++ ++ A K + ++E SAL +++ F
Sbjct: 119 VGNKCDLKD------------KRVVEYDVAKEFADANK-MPFLETSALDSTNVEDAFLT 164
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 20/62 (32%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 123 DY 124
+
Sbjct: 69 RF 70
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-07
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ VGK+CLL+ ++ + + ++Y+ T+
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI 41
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 6e-12
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
+ +IK V++G+ AVGK+ +++ + +N F PT+ V I ++DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQE + L P Y LV +
Sbjct: 61 GQERFASLAPXYYRNAQAALVVY 83
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 8e-11
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + L P Y LV + V P SF + WV E+ K LVG
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGN 116
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ID ++ ++ ++ E+GEKLA+E + + E SA T + + +VF I
Sbjct: 117 KIDXLQEGG---------ERKVAREEGEKLAEEK-GLLFFETSAKTGENVNDVF-LGIGE 165
Query: 315 AL 316
+
Sbjct: 166 KI 167
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 6e-07
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+ +IK V++G+ AVGK+ +++ + +N F PT+
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI 36
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 8e-12
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 18/122 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI----THHCQKTPF 249
L DTAG + Y + ++ F V S SFE+ K W + +
Sbjct: 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRA 135
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA-LTQKGLKNVF 308
+LV + DL ++ + + + A + + + SA K F
Sbjct: 136 VLVANKTDLPP-----------QRHQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPF 183
Query: 309 DE 310
Sbjct: 184 LS 185
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 65 KCVVVGDGAVGKTCLLISYT--TNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGL--FDTA 119
K VVG+ VGK+ L+ +T +KF +Y T + V I ++ L DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 120 GQEDY 124
G + Y
Sbjct: 82 GSDLY 86
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 5 KCVVVGDGAVGKTCLLISYT--TNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
K VVG+ VGK+ L+ +T +KF +Y T + V I ++
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F + T+ + T+ I G+ ++DTAGQE
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 124 Y 124
Y
Sbjct: 75 Y 75
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y L+ + + SS+EN W+ E+ + L
Sbjct: 68 DTAGQE---RYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGL 123
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G + DL + + E+ + A+E + + + E SAL + + F+E
Sbjct: 124 IGNKSDLAH------------LRAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFEE 169
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 9e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F + T+
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI 46
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 4e-10
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 196 DTAGQEDY--DRLRPLSYPQTDVFLVCFSV--VSPSSFENVKEKWVPEITHHCQKT--PF 249
D G E + P D FL+ V +F++ K+V + + KT P
Sbjct: 143 DQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPI 201
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
++V T+ D ++ I L+K+ ++ VE SA + + F
Sbjct: 202 VVVLTKCDEGV------------ERYIRDAHTFALSKK--NLQVVETSARSNVNVDLAFS 247
Query: 310 E 310
Sbjct: 248 T 248
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-07
Identities = 46/330 (13%), Positives = 91/330 (27%), Gaps = 101/330 (30%)
Query: 22 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT---LGLNFARTMQTIKCVVVGDGAVGKTC 78
Y + VF Y V+ + +PY L R + + ++ G GKT
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRL---QPYLKLRQALLELRPAKNV--LIDGVLGSGKTW 165
Query: 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY--TLGLFDTAGQEDYDRLRPLSYPQTD 136
+ + V +Y V + + + L ++ + + L+ L Y
Sbjct: 166 VALD-------------VCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDP 211
Query: 137 VFLVCFGNMMNIRRSVDWN----RKLGGWFWFISTEHSPPMKLHTLGFITNINPGWV--- 189
+ + NI+ + R+L S + + L + N+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYE-----NCLLVLLNVQNAKAWNA 261
Query: 190 -----------RDRSLFDTAGQEDY------DRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
R + + D L+ + L + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--------LKYLDC 313
Query: 233 KEKWVPEITHHCQKTPFL--LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290
+ + +P P ++ +R+ T +
Sbjct: 314 RPQDLPREV--LTTNPRRLSIIAES--IRDGLATWDNW---------------------- 347
Query: 291 VKYVECSALTQKGLKNVFDEAILAALEPPE 320
K+V C LT + E+ L LEP E
Sbjct: 348 -KHVNCDKLT-----TII-ESSLNVLEPAE 370
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 55 LNFARTMQTIKCVVVGDGAVGKTCLL----------ISYTTNKFPSEYVPTVFDNYAVTV 104
+NFA K V G G GKT L +E T+F ++
Sbjct: 6 INFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLD 65
Query: 105 M--IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD--VFLV 140
+ + G L+ GQ Y+ R L D VF+
Sbjct: 66 IGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVA 105
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 30/146 (20%)
Query: 177 TLGF-ITNINPGWVRDRS----LFDTAGQEDYDRLRPLSYPQTD--VFLV------CFSV 223
TL F ++ G V+ L+ GQ Y+ R L D VF+ +
Sbjct: 56 TLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRA- 114
Query: 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK 283
+ S N++E + E P ++ + DL DA +E +
Sbjct: 115 -NAESMRNMREN-LAEYGLTLDDVPIVIQVNKRDL-PDALPVEMVR------------AV 159
Query: 284 LAKELKAVKYVECSALTQKGLKNVFD 309
+ E K +E A KG+
Sbjct: 160 VDPEGK-FPVLEAVATEGKGVFETLK 184
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.98 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.98 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.96 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.96 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.96 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.96 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.96 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.96 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.96 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.96 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.96 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.96 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.96 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.96 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.96 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.96 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.96 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.96 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.96 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.96 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.96 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.96 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.96 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.96 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.96 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.96 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.96 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.96 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.96 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.96 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.96 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.96 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.96 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.96 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.96 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.96 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.96 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.96 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.96 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.96 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.96 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.96 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.96 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.96 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.95 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.95 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.95 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.95 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.95 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.95 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.92 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.95 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.95 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.95 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.95 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.95 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.95 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.95 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.95 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.94 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.94 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.94 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.94 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.93 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.93 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.93 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.93 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.93 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.93 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.93 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.93 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.93 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.93 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.93 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.92 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.92 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.92 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.92 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.92 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.91 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.9 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.9 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.9 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.9 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.89 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.88 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.88 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.87 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.87 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.87 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.86 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.86 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.86 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.83 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.83 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.82 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.82 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.82 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.81 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.81 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.81 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.8 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.8 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.79 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.79 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.79 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.78 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.76 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.76 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.74 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.74 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.74 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.71 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.71 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.71 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.71 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.7 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.7 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.69 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.68 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.68 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.68 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.67 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.67 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.67 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.67 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.67 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.66 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.66 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.64 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.64 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.64 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.63 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.63 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.63 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.62 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.62 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.61 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.61 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.6 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.6 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.6 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.59 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.58 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.58 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.57 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.56 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.56 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.56 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.56 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.56 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.55 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.53 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.52 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.51 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.51 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.51 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.5 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.5 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.5 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.49 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.49 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.48 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.48 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.47 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.47 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.47 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.47 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.47 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.46 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.46 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.46 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.46 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.45 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.45 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.45 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.45 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.44 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.44 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.44 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.44 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.44 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.43 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.43 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.43 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.43 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.43 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.43 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.43 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.42 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.42 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.42 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.42 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.41 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.41 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.4 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.4 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.4 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.4 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.4 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.39 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.39 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.39 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.39 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.39 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.38 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.38 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.38 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.38 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.38 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.38 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.38 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.37 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.37 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.37 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.37 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.37 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.36 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.36 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.35 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.35 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.35 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.35 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.34 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.34 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.34 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.34 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.34 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.34 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.34 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.33 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.33 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.0 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.32 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.32 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.31 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.31 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.31 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.28 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.28 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.28 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.28 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.27 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.26 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.26 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.26 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.26 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.26 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.26 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.26 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.25 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.25 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.24 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.23 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.21 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.2 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.19 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.19 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.19 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.18 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.18 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.18 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.17 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.13 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.13 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.12 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.11 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.07 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.03 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.02 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.98 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 98.97 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.97 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.94 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 98.94 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 98.91 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 98.88 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 98.88 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 98.86 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 98.85 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.85 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 98.81 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.8 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 98.8 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 98.78 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.76 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.75 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.71 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.7 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 98.69 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 98.66 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 98.61 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 98.61 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 98.55 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 98.54 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.54 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 98.51 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.5 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 98.47 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 98.46 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 98.43 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 98.42 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.38 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 98.37 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 98.36 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.33 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 98.29 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.23 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 98.23 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 98.19 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 98.09 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 98.07 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.02 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 98.01 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 98.01 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 97.94 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 97.9 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.9 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.87 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 97.86 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.83 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 97.82 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 97.78 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.74 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.74 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 97.73 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.71 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 97.71 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.68 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.66 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 97.63 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.59 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 97.57 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 97.54 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 97.52 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 97.52 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 97.48 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.45 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 97.45 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.45 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 97.45 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 97.44 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.41 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.39 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 97.38 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.36 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 97.32 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 97.3 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 97.27 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.26 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 97.25 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 97.24 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 97.23 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.2 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 97.19 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 97.18 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 97.14 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 97.13 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 97.09 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 97.08 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 97.02 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 96.97 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 96.95 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 96.92 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.86 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 96.82 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 96.81 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 96.81 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.8 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.72 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 96.68 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.67 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 96.58 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.53 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 96.52 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 96.45 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 96.43 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 96.35 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.28 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 96.27 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.22 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 96.16 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 96.13 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 96.04 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 95.99 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 95.94 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 95.86 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.7 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.46 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.28 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 95.15 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 94.76 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 94.75 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.67 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 94.66 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 94.64 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.47 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 94.36 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.28 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 94.14 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 94.13 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.1 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.82 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 93.79 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 93.78 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 93.7 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 93.69 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 93.51 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 93.5 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.49 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 93.4 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 93.36 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 93.35 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 93.32 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 93.3 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 93.19 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 93.17 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 93.06 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 93.05 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 92.96 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 92.94 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 92.89 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 92.88 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 92.75 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 92.74 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 92.74 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 92.73 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 92.73 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 92.73 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 92.7 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 92.66 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 92.59 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 92.57 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 92.57 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 92.46 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 92.44 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 92.38 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 92.38 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 92.33 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 92.29 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.26 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 92.25 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 92.22 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 92.17 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 92.16 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 92.15 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 92.12 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 92.08 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 92.06 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 92.06 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 92.01 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.01 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 91.97 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 91.97 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 91.95 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 91.93 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 91.92 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 91.87 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 91.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 91.85 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 91.84 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 91.79 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 91.73 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 91.65 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 91.64 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 91.64 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 91.6 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 91.6 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 91.54 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 91.52 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.51 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.5 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=264.78 Aligned_cols=164 Identities=28% Similarity=0.506 Sum_probs=132.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+++||++|||+|||||||+.||+.+.|...|.||++..+ .+.+.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~---------------------------------- 56 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY---------------------------------- 56 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEE----------------------------------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEE----------------------------------
Confidence 6789999999999999999999999999999999986443 33332
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+++..+.++||||+|+
T Consensus 57 --------------------------~~~~~v~l~iwDtaGq-------------------------------------- 72 (216)
T 4dkx_A 57 --------------------------LEDRTIRLQLWDTAGL-------------------------------------- 72 (216)
T ss_dssp --------------------------CSSCEEEEEEECCSCT--------------------------------------
T ss_pred --------------------------ecceEEEEEEEECCCc--------------------------------------
Confidence 3344556667788877
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
++|..+++.++++++++++|||+++++||+++. .|+..
T Consensus 73 -----------------------------------------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~-~~~~~ 110 (216)
T 4dkx_A 73 -----------------------------------------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDD 110 (216)
T ss_dssp -----------------------------------------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHH-HHHHH
T ss_pred -----------------------------------------hhhhhHHHHHhccccEEEEEeecchhHHHHHHH-HHHHH
Confidence 777778888899999999999999999999998 89998
Q ss_pred hhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 240 ITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 240 i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+.... +++|++|||||+|+... |+++.+++++++++++ +.|+|+||++|.||+++|+.+++.+..
T Consensus 111 i~~~~~~~~piilVgNK~Dl~~~------------r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 111 VRTERGSDVIIMLVGNKTDLADK------------RQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHTTSSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred HHHhcCCCCeEEEEeeccchHhc------------CcccHHHHhhHHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 87764 68999999999999765 8999999999999998 689999999999999999999998863
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=235.52 Aligned_cols=185 Identities=39% Similarity=0.685 Sum_probs=155.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|||||||+++|.++.|...+.||++..+...+.+++..+.+.+|||+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------- 85 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGS----------------- 85 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCS-----------------
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCC-----------------
Confidence 446689999999999999999999999999999999999999888888899999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 86 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 86 --------------------------------------------------------------PYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --------------------------------------------------------------GGGTTTGGGGCTTCSEEE
T ss_pred --------------------------------------------------------------HhHHHHHHHHcCCCeEEE
Confidence 666677777889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++++|+++...|+..+....+++|+++||||+|+..+............+.+..+++..+++.++..+|+|+||
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 99999999999994338999999888899999999999998764444445555668899999999999998449999999
Q ss_pred ccCCC-HHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKG-LKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~-v~~~f~~l~~~i~~~~~~~ 322 (330)
++|.| ++++|+.+++.+++...+.
T Consensus 184 ~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 184 FTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp TTCHHHHHHHHHHHHHHHHC-----
T ss_pred CCCcccHHHHHHHHHHHHhccCcCC
Confidence 99998 9999999999998776544
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-32 Score=226.75 Aligned_cols=184 Identities=70% Similarity=1.175 Sum_probs=160.4
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+|+.+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 63 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ------------------ 63 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCS------------------
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCC------------------
Confidence 47789999999999999999999999999999999999888888888999999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 64 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 64 -------------------------------------------------------------EDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp -------------------------------------------------------------GGGTTTGGGGCTTCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHhccCCcEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+++...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 99999999999997679999988777999999999999987654444444555688999999999999985599999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
+|.|++++|+.+++.+++++..+
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC--
T ss_pred CccCHHHHHHHHHHHHhcccccC
Confidence 99999999999999998876544
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-32 Score=226.15 Aligned_cols=178 Identities=43% Similarity=0.813 Sum_probs=155.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.|...+.||.+..+...+.+++..+.+.+|||+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 65 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------- 65 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCS-------------------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4579999999999999999999999999999999999888778888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.|..++..+++++|++++|
T Consensus 66 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 85 (184)
T 1m7b_A 66 ------------------------------------------------------------PYYDNVRPLSYPDSDAVLIC 85 (184)
T ss_dssp ------------------------------------------------------------GGGTTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhhhHHhhcCCCcEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec-
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL- 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~- 299 (330)
||++++.+|+++...|+..+....+++|+++||||+|+..+.....+......+.++.++++.+++.++..+|+++||+
T Consensus 86 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 165 (184)
T 1m7b_A 86 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165 (184)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecC
Confidence 9999999999994489999988778999999999999986544444444555688999999999999886799999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+++.+++
T Consensus 166 ~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 166 SENSVRDIFHVATLACVN 183 (184)
T ss_dssp BHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 689999999999998875
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=225.40 Aligned_cols=179 Identities=70% Similarity=1.185 Sum_probs=156.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.|...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~------------------- 76 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ------------------- 76 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCS-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC-------------------
Confidence 3568999999999999999999999999999999999888878888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 77 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 77 ------------------------------------------------------------EDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp ------------------------------------------------------------SSSTTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------cchhHHHHHhcCCCCEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+++.+.|+..+....+++|+++|+||+|+.......+......++.+..+++..+++.++..+|+++||++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 176 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCC
Confidence 99999999999976799999888789999999999999876444444444556789999999999999855899999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++++|+.+++.++++
T Consensus 177 g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 177 QKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999998764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=225.34 Aligned_cols=175 Identities=43% Similarity=0.827 Sum_probs=154.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.....+||+++|++|+|||||+++|.++.+...+.+|++..+...+.+++..+.+.+|||+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 81 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ----------------- 81 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCc-----------------
Confidence 345679999999999999999999999999999999999999888889999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 82 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 82 --------------------------------------------------------------EEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp --------------------------------------------------------------GGGTTTGGGGCTTCSEEE
T ss_pred --------------------------------------------------------------HHHHHHhHhhccCCcEEE
Confidence 666677777889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.+|+++...|+..+....+++|+++|+||+|+..+. .+.+..+++..+++.++...|+++||
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa 169 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG----------SDDVTKQEGDDLCQKLGCVAYIEASS 169 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT----------TTCCCHHHHHHHHHHHTCSCEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC----------CCcccHHHHHHHHHhcCCCEEEEeec
Confidence 99999999999998558999998888899999999999997532 37789999999999998544999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
++|.|++++|+.+++.+.+++..+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~~~~~~ 193 (194)
T 3reg_A 170 VAKIGLNEVFEKSVDCIFSNKPVP 193 (194)
T ss_dssp TTTBSHHHHHHHHHHHHHCSCC--
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998876543
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-32 Score=231.08 Aligned_cols=178 Identities=53% Similarity=0.960 Sum_probs=150.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|+|||||+++|..+.|...+.||+++.+...+.+++..+.+.+|||+|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 67 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ------------------- 67 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4579999999999999999999999999999999999888878888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++|..++..+++++|++++|
T Consensus 68 ------------------------------------------------------------~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 68 ------------------------------------------------------------EDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp ------------------------------------------------------------CCCCC--CGGGTTCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHhhccCCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+++.+.|+..+....+++|+++|+||+|+..+.... ....+.+..+++..+++.++..+|+++||++
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHH----HTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccc----ccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 999999999999667999998887899999999999997642110 1123467889999999999856999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC
Q psy9997 301 QKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~~ 321 (330)
|.|++++|+.+++.+.++...
T Consensus 164 g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999876543
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=226.83 Aligned_cols=181 Identities=60% Similarity=1.021 Sum_probs=148.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.|...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 78 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ------------------- 78 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCS-------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4579999999999999999999999999999999999888888888998999999999999
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 79 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 98 (201)
T 2q3h_A 79 ------------------------------------------------------------DEFDKLRPLCYTNTDIFLLC 98 (201)
T ss_dssp ------------------------------------------------------------TTCSSSGGGGGTTCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHhHhhcCCCcEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+++...|+..+....+++|+++|+||+|+..+......+.....+.+..+++..+++.++..+|+++||++
T Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (201)
T 2q3h_A 99 FSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCC
Confidence 99999999999965799999888789999999999999865443334444445788999999999999855999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCC
Q psy9997 301 QKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~ 320 (330)
|.|++++|+.+++.+++++.
T Consensus 179 g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 179 QKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CTTHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcccc
Confidence 99999999999999876543
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=227.44 Aligned_cols=179 Identities=42% Similarity=0.809 Sum_probs=154.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
....+||+++|++|||||||+++|.++.|...+.||++..+...+.+++..+.+.+|||+|+
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 86 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------ 86 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCS------------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 35679999999999999999999999999999999999888777888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.|..++..+++++|++++
T Consensus 87 -------------------------------------------------------------~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 87 -------------------------------------------------------------PYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -------------------------------------------------------------GGGTTTGGGGCTTCSEEEE
T ss_pred -------------------------------------------------------------HhhhHHHHhhccCCCEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+++...|+..+....++.|+++||||+|+..+.....+......+.++.++++.+++.++..+|+++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 99999999999994489999988778999999999999986544444444455688999999999999886799999999
Q ss_pred -cCCCHHHHHHHHHHHhcC
Q psy9997 300 -TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 -~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+++.+++
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=227.86 Aligned_cols=178 Identities=27% Similarity=0.459 Sum_probs=143.9
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 82 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ------------------ 82 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCC------------------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 35679999999999999999999999999999999999888777888888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++.+|++++
T Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 83 -------------------------------------------------------------DEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -------------------------------------------------------------CTTCCCCGGGTTTCCEEEE
T ss_pred -------------------------------------------------------------cchHHHHHHHHhcCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
|||++++++|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++.++ ++|+++|
T Consensus 102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 167 (201)
T 3oes_A 102 VYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPE------------REVQAVEGKKLAESWG-ATFMESS 167 (201)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCccc------------cccCHHHHHHHHHHhC-CeEEEEe
Confidence 99999999999998 8998887763 57899999999999765 7889999999999998 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCCCCC-CCCCcccC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPPEPP-KKRKCVLL 330 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~~~~-~~~~~~~~ 330 (330)
|++|.|++++|+.+++.+.+..... ++++|.||
T Consensus 168 a~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~ 201 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence 9999999999999999998775554 55678876
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=227.06 Aligned_cols=181 Identities=44% Similarity=0.899 Sum_probs=140.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------- 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ------------------- 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4679999999999999999999999999999999998888888888999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 93 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 93 ------------------------------------------------------------DDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp ------------------------------------------------------------------------CEEEEEEE
T ss_pred ------------------------------------------------------------hhhhHHHHHHhccCCEEEEE
Confidence 55566667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+.+...|+..+.....++|+++|+||+|+.......+.......+.++.++++.+++.++..+|+++||++
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 192 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTT
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCC
Confidence 99999999999975799999888789999999999999876544444444556789999999999999855999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCC
Q psy9997 301 QKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~ 320 (330)
|.|++++|+.+++.+++.+.
T Consensus 193 g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 193 HDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TBSHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999986543
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=220.90 Aligned_cols=176 Identities=32% Similarity=0.562 Sum_probs=146.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 62 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------- 62 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCc-------------------
Confidence 4679999999999999999999999999999999998888888889999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 63 ------------------------------------------------------------EEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp ---------------------------------------------------------------CTTHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 55556667778889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++..+++.++ ++++++||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 147 (189)
T 4dsu_A 83 FAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPS-------------RTVDTKQAQDLARSYG-IPFIETSA 147 (189)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSS-------------CSSCHHHHHHHHHHHT-CCEEECCT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcc-------------cccCHHHHHHHHHHcC-CeEEEEeC
Confidence 9999999999998 8988887754 5899999999999974 6678899999999998 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC----------CCCCCCCCCcccC
Q psy9997 299 LTQKGLKNVFDEAILAALE----------PPEPPKKRKCVLL 330 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~----------~~~~~~~~~~~~~ 330 (330)
++|.|++++|+.+++.+.+ ..+.+++.+|+||
T Consensus 148 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 148 KTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 9999999999999998862 2333455778886
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=220.65 Aligned_cols=178 Identities=53% Similarity=0.950 Sum_probs=156.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++||+++|++|||||||+++|.++.+...+.||++..+...+.+++..+.+.+|||+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 83 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ------------------- 83 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCS-------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 5678999999999999999999999999999999999988877888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 84 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 84 ------------------------------------------------------------EDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp ------------------------------------------------------------GGGTTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------hhHHHHHHHhcCCCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+.+...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||++
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 183 (201)
T 2gco_A 104 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKT 183 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCC
Confidence 99999999999955899998887789999999999999876555555555556789999999999999855899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.+++.+++
T Consensus 184 g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 184 KEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=221.57 Aligned_cols=166 Identities=22% Similarity=0.338 Sum_probs=145.1
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+..+||+++|++|||||||+++|+++.|...+.|| +..+...+.+++..+.+++|||+|+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~---------------- 77 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGP---------------- 77 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSS----------------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCC----------------
Confidence 35678899999999999999999999999999988888 4556688889999999999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+. +++.+|++
T Consensus 78 ---------------------------------------------------------------~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 78 ---------------------------------------------------------------PELQ-----FAAWVDAV 89 (184)
T ss_dssp ---------------------------------------------------------------CCHH-----HHHHCSEE
T ss_pred ---------------------------------------------------------------hhhh-----eecCCCEE
Confidence 4443 56779999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+|+++. .|+..+.... .++|+++||||+|+.... .+.+..+++..+++.++.++|++
T Consensus 90 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAAN----------PRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHTTTCEEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc----------ccccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999999998 7999988764 589999999999996421 27899999999999997679999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+||++|.|++++|+.+++.+++.+
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887643
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=222.75 Aligned_cols=165 Identities=26% Similarity=0.436 Sum_probs=143.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.+...+||+++|++|||||||+++|.++.|...+.+|++..+...+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------- 79 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL----------------- 79 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCC-----------------
Confidence 346789999999999999999999999999999999999988778888999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..+ ..+++.+|+++
T Consensus 80 --------------------------------------------------------------~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 80 --------------------------------------------------------------DTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp ----------------------------------------------------------------CCCT-HHHHTTCSEEE
T ss_pred --------------------------------------------------------------CcchhH-HHHHhhCCEEE
Confidence 333333 34677899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
+|||++++++|+++. .|+..+.... .++|+++|+||+|+... +.++.+++.++++.++ ++|+
T Consensus 97 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 162 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQY------------RQVTKAEGVALAGRFG-CLFF 162 (187)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhc------------CccCHHHHHHHHHHcC-CcEE
Confidence 999999999999998 8999988764 68999999999999765 7789999999999998 6999
Q ss_pred EEee-ccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSA-LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa-~~~~~v~~~f~~l~~~i~~ 317 (330)
++|| ++|.|++++|+.+++.+.+
T Consensus 163 e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 163 EVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp ECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEeecCccccHHHHHHHHHHHHhh
Confidence 9999 8999999999999998764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=217.89 Aligned_cols=169 Identities=28% Similarity=0.473 Sum_probs=148.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+|||+|+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 64 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ------------------- 64 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 4679999999999999999999999999999999999988888889999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 65 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 65 ------------------------------------------------------------DEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp ------------------------------------------------------------CTTCCCCGGGTTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhHHHHHHHhcCCEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++.++ ++|+++||
T Consensus 85 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 150 (181)
T 3t5g_A 85 YSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHME------------RVISYEEGKALAESWN-AAFLESSA 150 (181)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc------------ceecHHHHHHHHHHhC-CcEEEEec
Confidence 9999999999998 7998887664 47999999999999765 8899999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
++|.|++++|+.+++.+.+.+.+.
T Consensus 151 ~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999998765543
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=223.60 Aligned_cols=178 Identities=71% Similarity=1.203 Sum_probs=155.2
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+..+||+++|++|||||||+++|..+.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 88 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL------------------ 88 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCS------------------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCc------------------
Confidence 46789999999999999999999999999999999999888888889999999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 89 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 89 -------------------------------------------------------------EDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp -------------------------------------------------------------GGGTTTGGGGCTTCSEEEE
T ss_pred -------------------------------------------------------------hhhHHHHHHHhccCCEEEE
Confidence 6666677778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+++...|+..+.....+.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 99999999999997679999988888999999999999987765555555666678999999999999987789999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+++.++
T Consensus 188 ~g~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAVL 204 (204)
T ss_dssp TCTTHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=221.74 Aligned_cols=183 Identities=52% Similarity=0.915 Sum_probs=153.2
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.++||+++|++|||||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||+|+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 83 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ------------------ 83 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTC------------------
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCc------------------
Confidence 46789999999999999999999999999999999998888777888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 84 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 84 -------------------------------------------------------------EDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp -------------------------------------------------------------TTCTTTGGGGCTTCCEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHhhcCCCCEEEE
Confidence 5555666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+.+...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++..+..+|+++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 99999999999995589999988778999999999999987655455555555678899999999999985589999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+|.|++++|+.+++.++++...
T Consensus 183 ~g~gi~el~~~l~~~i~~~~~~ 204 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQKRYG 204 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999876543
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=218.48 Aligned_cols=165 Identities=26% Similarity=0.526 Sum_probs=119.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.||++..+. ..+.+++..+.+.+|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ------------------ 67 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCC------------------
Confidence 34689999999999999999999999998888899887764 47778888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 68 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 68 -------------------------------------------------------------ERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp -------------------------------------------------------------------CCTTTTTCSEEEE
T ss_pred -------------------------------------------------------------hhhhhhHHHHHhcCCEEEE
Confidence 5556667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++++++.++ ++++++||
T Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 152 (183)
T 2fu5_C 87 VYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETSA 152 (183)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECCC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCcc------------CcCCHHHHHHHHHHcC-CeEEEEeC
Confidence 99999999999998 7999988764 58999999999999765 7788999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 153 ~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 153 KANINVENAFFTLARDIKAK 172 (183)
T ss_dssp ---CCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=214.60 Aligned_cols=164 Identities=27% Similarity=0.516 Sum_probs=145.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
|+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 61 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT------------------- 61 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCCh-------------------
Confidence 5689999999999999999999999999999999999888888888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 62 ------------------------------------------------------------EQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp ------------------------------------------------------------CSSTTHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 44555566678889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+|+.+. .|+..+... ..+.|+++|+||+|+..+ +.+..++++.+++.++..+++++||
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 82 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECcccccc------------ccCCHHHHHHHHHHccCCcEEEecC
Confidence 9999999999998 788887765 358999999999999765 7788899999999985589999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTBSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=222.71 Aligned_cols=166 Identities=32% Similarity=0.560 Sum_probs=147.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 72 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ----------------- 72 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCT-----------------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCCh-----------------
Confidence 346789999999999999999999999999999999999888888888888899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++.+|+++
T Consensus 73 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 73 --------------------------------------------------------------EDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp --------------------------------------------------------------TCCHHHHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------hhhHHHHHHHHhhCCEEE
Confidence 555555666788899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++++|+.+. .|+..+..... +.|+++|+||+|+... +.+..+++..+++.++ ++|+++
T Consensus 91 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 156 (206)
T 2bov_A 91 CVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVET 156 (206)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCcccc------------ccccHHHHHHHHHHhC-CeEEEE
Confidence 999999999999998 89998887654 8999999999999765 6788999999999998 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+++.+.+
T Consensus 157 Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 157 SAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=221.06 Aligned_cols=177 Identities=54% Similarity=0.959 Sum_probs=133.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|+|||||+++|..+.+...+.||+++.+...+.+++..+.+++|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 66 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ------------------- 66 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC--------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4578999999999999999999999999989999988777666666777777778887777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 67 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 86 (182)
T 3bwd_D 67 ------------------------------------------------------------EDYNRLRPLSYRGADVFILA 86 (182)
T ss_dssp ------------------------------------------------------------CTTTTTGGGGGTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhhhHHhhccCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+++.+.|+..+....++.|+++|+||+|+........ .....+.+..+++..+++.++..+|+++||++
T Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 87 FSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFI--DHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHH--HC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCccccc--ccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 9999999999997679999988777999999999999976422111 12233557889999999999855999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++++|+.+++.++++
T Consensus 165 ~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp CTTHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=215.65 Aligned_cols=166 Identities=31% Similarity=0.514 Sum_probs=149.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|+|||||+++|.+..+...+.+|.+..+.....+++..+.+.+|||+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------- 76 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ----------------- 76 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSC-----------------
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCc-----------------
Confidence 456789999999999999999999999999999999999998888899999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++++|+++
T Consensus 77 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 77 --------------------------------------------------------------EEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp --------------------------------------------------------------GGGCSSHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------hhhHHHHHHHHhcCCEEE
Confidence 556666677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++++|+.+. .|+..+... ..++|+++|+||+|+... +.+..++++.+++.++ ++|+++
T Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 160 (183)
T 3kkq_A 95 IVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHL------------RKVTRDQGKEMATKYN-IPYIET 160 (183)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTT------------CCSCHHHHHHHHHHHT-CCEEEE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhc------------cCcCHHHHHHHHHHhC-CeEEEe
Confidence 999999999999998 898888664 368999999999999765 7899999999999998 799999
Q ss_pred eec-cCCCHHHHHHHHHHHhcC
Q psy9997 297 SAL-TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~-~~~~v~~~f~~l~~~i~~ 317 (330)
||+ +|.|++++|+.+++.+.+
T Consensus 161 Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp BCSSSCBSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHhh
Confidence 999 999999999999988764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=209.32 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=130.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.+|..+.|.. +.||+++.+.+.+.+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~-------------------------------- 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDG-------------------------------- 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETT--------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECC--------------------------------
Confidence 578999999999999999999999999976 77887665554444443
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+.+++|||+|+
T Consensus 52 ----------------------------~~~~l~i~Dt~G~--------------------------------------- 64 (178)
T 2iwr_A 52 ----------------------------QTHLVLIREEAGA--------------------------------------- 64 (178)
T ss_dssp ----------------------------EEEEEEEEECSSS---------------------------------------
T ss_pred ----------------------------EEEEEEEEECCCC---------------------------------------
Confidence 3445667788887
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
++ ..+++++|++++|||++++++|+++. .|+..+
T Consensus 65 ----------------------------------------~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~-~~~~~i 98 (178)
T 2iwr_A 65 ----------------------------------------PD-----AKFSGWADAVIFVFSLEDENSFQAVS-RLHGQL 98 (178)
T ss_dssp ----------------------------------------CC-----HHHHHHCSEEEEEEETTCHHHHHHHH-HHHHHH
T ss_pred ----------------------------------------ch-----hHHHHhCCEEEEEEECcCHHHHHHHH-HHHHHH
Confidence 32 23567899999999999999999998 776555
Q ss_pred hhc---C-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 241 THH---C-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 241 ~~~---~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
... . +++|+++||||+|+.... .+.+..++++++++.++.++|+++||++|.|++++|+.+++.++
T Consensus 99 ~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 99 SSLRGEGRGGLALALVGTQDRISASS----------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHCSSSCCCEEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEEECccccccc----------cCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 443 2 589999999999995321 27789999999999886589999999999999999999999887
Q ss_pred CC
Q psy9997 317 EP 318 (330)
Q Consensus 317 ~~ 318 (330)
+.
T Consensus 169 ~~ 170 (178)
T 2iwr_A 169 TL 170 (178)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=215.66 Aligned_cols=105 Identities=22% Similarity=0.385 Sum_probs=88.3
Q ss_pred cccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH
Q psy9997 205 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE 282 (330)
Q Consensus 205 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 282 (330)
.+.+.+++.++++++|||++++.+|+.+. .|...+... ..++|++|||||+|+... +.+..++++
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~------------r~v~~~e~~ 169 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRC------------REVSVSEGR 169 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGG------------CCSCHHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhcC------------ceEeHHHHH
Confidence 34566788899999999999999999998 788877654 258999999999999754 778889999
Q ss_pred HHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCCCC
Q psy9997 283 KLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPPK 323 (330)
Q Consensus 283 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~~~ 323 (330)
.++..++ ++|+|+||++|.||+++|+.+++.+......++
T Consensus 170 ~~a~~~~-~~~~e~SAk~g~~v~elf~~l~~~i~~~~~~~~ 209 (211)
T 2g3y_A 170 ACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209 (211)
T ss_dssp HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHhccccc
Confidence 9999988 699999999999999999999998865544443
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-30 Score=212.23 Aligned_cols=164 Identities=32% Similarity=0.561 Sum_probs=145.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
|..+||+++|++|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 62 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ------------------- 62 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 6789999999999999999999999999999999999888888888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++.+|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 63 ------------------------------------------------------------EDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------chhHHHHHHHhhcCCEEEEE
Confidence 44555566678889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+.+. .|+..+..... +.|+++|+||+|+..+ +.+..++++.+++.++ ++++++||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (168)
T 1u8z_A 83 FSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVETSA 148 (168)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECCT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeCC
Confidence 9999999999998 89988887654 8999999999999765 6788899999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 149 ~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 149 KTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-30 Score=220.16 Aligned_cols=168 Identities=25% Similarity=0.415 Sum_probs=139.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.|...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 88 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ------------------ 88 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 4579999999999999999999999999888999998776 457788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++++|++++
T Consensus 89 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 107 (201)
T 2hup_A 89 -------------------------------------------------------------ERFRTITQSYYRSANGAIL 107 (201)
T ss_dssp -------------------------------------------------------------GGGHHHHHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHHhhCCEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+++. .|+..+.... .++|+++|+||+|+... +.+..++++++++.++..+|+++||
T Consensus 108 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 108 AYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSEL------------REVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp EEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCccccc------------cccCHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999998 8999988765 68999999999999764 7788999999999998339999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
++|.|++++|+.+++.+.++..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999976544
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=209.67 Aligned_cols=164 Identities=30% Similarity=0.566 Sum_probs=140.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+|||+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 65 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ------------------ 65 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45789999999999999999999999998888999987775 57778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 66 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 66 -------------------------------------------------------------ERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp --------------------------------------------------------------------CCSSTTCSEEEE
T ss_pred -------------------------------------------------------------HhhhhhHHHHhccCCEEEE
Confidence 5555666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+++.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++.++ .+++++||
T Consensus 85 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 150 (170)
T 1z08_A 85 VYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHTSA 150 (170)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEBT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEecC
Confidence 99999999999998 8998887654 57999999999999765 6788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998865
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-30 Score=218.11 Aligned_cols=165 Identities=28% Similarity=0.494 Sum_probs=146.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ------------------ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 4579999999999999999999999999988999998766 457888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++++|++++
T Consensus 86 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 86 -------------------------------------------------------------ERFRSITQSYYRSANALIL 104 (201)
T ss_dssp -------------------------------------------------------------GGGHHHHGGGSTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhcCCEEEE
Confidence 5666667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.+++..+ ++|+++||
T Consensus 105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 170 (201)
T 2ew1_A 105 TYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAER------------REVSQQRAEEFSEAQD-MYYLETSA 170 (201)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CCEEECCT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8999988765 57999999999999754 7788899999999887 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 171 ~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 171 KESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-30 Score=217.85 Aligned_cols=164 Identities=26% Similarity=0.462 Sum_probs=142.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.++.+...+.+|++..+...+..++..+.+.+|||+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 66 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGS------------------- 66 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGG-------------------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCCh-------------------
Confidence 3568999999999999999999999999988999998888777788888888999999988
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 67 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 86 (199)
T 2gf0_A 67 ------------------------------------------------------------HQFPAMQRLSISKGHAFILV 86 (199)
T ss_dssp ------------------------------------------------------------GSCHHHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------HHhHHHHHHhhccCCEEEEE
Confidence 55555566678889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++..+++.++ ++|+++|
T Consensus 87 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 151 (199)
T 2gf0_A 87 FSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQ-------------REVDTREAQAVAQEWK-CAFMETS 151 (199)
T ss_dssp EETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHHT-CEEEECB
T ss_pred EECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCc-------------cccCHHHHHHHHHHhC-CeEEEEe
Confidence 9999999999998 6776665542 4789999999999964 5577888999999988 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+++++.+.++
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 152 AKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTTTBSHHHHHHHHHHHCSSS
T ss_pred cCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999988654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-30 Score=216.61 Aligned_cols=168 Identities=28% Similarity=0.380 Sum_probs=138.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+||+++|++|||||||+++|.+..+...+.++.+ +.+...+.+++..+.+.+|||+|+++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------------- 84 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD--------------- 84 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG---------------
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc---------------
Confidence 34579999999999999999999987655444445554 44456778889999999999999833
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccc-ccCccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDR-LRPLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~-~~~~~~~~~d~~ 217 (330)
+.. ++..+++.+|++
T Consensus 85 ----------------------------------------------------------------~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 85 ----------------------------------------------------------------AGGWLRDHCLQTGDAF 100 (195)
T ss_dssp ----------------------------------------------------------------GGHHHHHHHHHHCSEE
T ss_pred ----------------------------------------------------------------chhhhHHHhhccCCEE
Confidence 222 445567889999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+|+.+. .|+.++.... .++|+++||||+|+... +.++.++++.+++.++ ++|+|
T Consensus 101 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e 166 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIE 166 (195)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhcccc------------CCcCHHHHHHHHHHhC-CEEEE
Confidence 9999999999999998 8999887765 48999999999999765 7788999999999987 69999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+||++|.|++++|+.+++.+.+...
T Consensus 167 ~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 167 TSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred EcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999876543
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-30 Score=213.71 Aligned_cols=168 Identities=25% Similarity=0.350 Sum_probs=143.7
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECC-ceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGG-EPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.++.+||+++|++|+|||||+++|.++.+...+.||++..+ ...+.+++ ..+.+.+|||+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~---------------- 66 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ---------------- 66 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC----------------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC----------------
Confidence 46789999999999999999999999998888888887554 55777766 5788899999888
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+...+..+++++|++
T Consensus 67 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 67 ---------------------------------------------------------------TIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp ---------------------------------------------------------------CTTCTTHHHHHTTCSEE
T ss_pred ---------------------------------------------------------------ccccchhhHHHhhCCEE
Confidence 55556666778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC---CCCc-EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC---QKTP-FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~p-iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
++|||++++.+|+++. .|+..+.... .+.| +++|+||+|+... +.+..+++..+++.++ +++
T Consensus 84 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~ 149 (178)
T 2hxs_A 84 LLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHM------------RTIKPEKHLRFCQENG-FSS 149 (178)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHcC-CcE
Confidence 9999999999999998 8998887753 2455 8999999999764 6788899999999998 799
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+++||++|.|++++|+.+++.+.+.+.
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 150 HFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999987654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-30 Score=212.53 Aligned_cols=169 Identities=30% Similarity=0.485 Sum_probs=148.6
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 67 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ----------------- 67 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT-----------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 456789999999999999999999999999999999999988888888988899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 68 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 68 --------------------------------------------------------------EEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp --------------------------------------------------------------TTTSCCHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------hhhHHHHHHHHhhCCEEE
Confidence 555556666788899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+|+.+. .|+..+... ..+.|+++|+||+|+... +.+..+++..++...+ ++|+++
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 151 (181)
T 2fn4_A 86 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQ------------RQVPRSEASAFGASHH-VAYFEA 151 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEe
Confidence 999999999999998 888887443 258999999999999765 6788899999999987 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
||++|.|++++|+.+.+.+.+..+
T Consensus 152 Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999875543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=208.38 Aligned_cols=165 Identities=24% Similarity=0.466 Sum_probs=144.7
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
++..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------------- 65 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ----------------- 65 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 35679999999999999999999999999888889988776 457778888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++...+..+++++|+++
T Consensus 66 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 66 --------------------------------------------------------------ERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp --------------------------------------------------------------GGGGGGHHHHHTTCSEEE
T ss_pred --------------------------------------------------------------HHhhhhhHHhccCCCEEE
Confidence 555566677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+|+.+. .|+..+.... +++|+++|+||+|+..+ +.+..++++.+++..+ ++++++|
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1r2q_A 84 VVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK------------RAVDFQEAQSYADDNS-LLFMETS 149 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence 999999999999998 8988887764 68999999999999764 6788899999999987 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.+.+.+.+
T Consensus 150 a~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=209.32 Aligned_cols=168 Identities=26% Similarity=0.431 Sum_probs=145.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
..+..+||+++|++|+|||||+++|.+..+...+.++++..+. ..+.+++..+.+.+|||+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 71 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ---------------- 71 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS----------------
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC----------------
Confidence 3466799999999999999999999999998888899887764 47778888889999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+++...+..+++.+|++
T Consensus 72 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 72 ---------------------------------------------------------------ERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp ---------------------------------------------------------------GGGGGGTHHHHTTCSEE
T ss_pred ---------------------------------------------------------------hhhhhhhHHHhccCCEE
Confidence 55666667778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+|+.+. .|+..+.... +++|+++|+||+|+... +.+..++++.+++.++ ++++++
T Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 154 (181)
T 2efe_B 89 IIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDA------------RKVTAEDAQTYAQENG-LFFMET 154 (181)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc------------ccCCHHHHHHHHHHcC-CEEEEE
Confidence 9999999999999998 8998888765 58999999999999765 7788899999999987 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
||++|.|++++|+.+++.+.+.+
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 155 SAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTCC---
T ss_pred ECCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999887654
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-30 Score=211.11 Aligned_cols=167 Identities=24% Similarity=0.337 Sum_probs=131.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||+++|.+..+...+.++..+.+...+.+++..+.+.+|||+|++.+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------------- 65 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL---------------- 65 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCcc----------------
Confidence 4678999999999999999999999887665543323344567788888899999999998321
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
.+..+...+++.+|++++|
T Consensus 66 -------------------------------------------------------------~~~~~~~~~~~~~~~~i~v 84 (175)
T 2nzj_A 66 -------------------------------------------------------------DKSWSQESCLQGGSAYVIV 84 (175)
T ss_dssp ---------------------------------------------------------------CHHHHHTTTSCSEEEEE
T ss_pred -------------------------------------------------------------chhhhHHhhcccCCEEEEE
Confidence 0334455677889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.++..++ ++++++||
T Consensus 85 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 150 (175)
T 2nzj_A 85 YSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARC------------REVSVEEGRACAVVFD-CKFIETSA 150 (175)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHHT-SEEEECBT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhccc------------cccCHHHHHHHHHHcC-CeEEEEec
Confidence 9999999999998 8988887753 58999999999999765 7788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 151 ~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=208.14 Aligned_cols=164 Identities=31% Similarity=0.497 Sum_probs=145.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 64 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ------------------ 64 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTG------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCc------------------
Confidence 3578999999999999999999999999989999998666 457778888888999999888
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 65 -------------------------------------------------------------EEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp -------------------------------------------------------------GGTTCCCHHHHTTCCEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHhcCCCEEEE
Confidence 5556666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+++.+. .|+..+.....+.|+++|+||+|+... +.+..++++.+++.++ ++++++||+
T Consensus 84 v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 149 (168)
T 1z2a_A 84 VFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEEAEGLAKRLK-LRFYRTSVK 149 (168)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEEECBTT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEecC
Confidence 99999999999998 799988877788999999999999765 6788899999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+.+.+++
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998865
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=208.99 Aligned_cols=165 Identities=32% Similarity=0.525 Sum_probs=145.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 68 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ------------------ 68 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCc------------------
Confidence 45689999999999999999999999998888899876664 57788888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 69 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 87 (181)
T 3tw8_B 69 -------------------------------------------------------------ERFRTITSTYYRGTHGVIV 87 (181)
T ss_dssp -------------------------------------------------------------GGCSSCCGGGGTTCSEEEE
T ss_pred -------------------------------------------------------------hhhhhhHHHHhccCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+++.+. .|+..+....++.|+++|+||+|+... +.+..+++..++...+ ++++++||+
T Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (181)
T 3tw8_B 88 VYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPER------------KVVETEDAYKFAGQMG-IQLFETSAK 153 (181)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchh------------cccCHHHHHHHHHHcC-CeEEEEECC
Confidence 99999999999998 899999888889999999999999765 7788899999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.|++++|+.+.+.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=207.99 Aligned_cols=161 Identities=20% Similarity=0.338 Sum_probs=122.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+||+++|++|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------------------- 59 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ--------------------- 59 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCC---------------------
Confidence 479999999999999999999876654 4456777777778888999999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..++..+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 60 ----------------------------------------------------------DGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp -----------------------------------------------------------------------CCEEEEEEE
T ss_pred ----------------------------------------------------------ccchhhhhhhhhhCCEEEEEEE
Confidence 5566667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.++..++ ++|+++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (166)
T 3q72_A 82 VTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRS------------REVSVDEGRACAVVFD-CKFIETSAAL 147 (166)
T ss_dssp TTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSS------------CCSCHHHHHHHHHHTT-CEEEECBGGG
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccccccc------------cccCHHHHHHHHHHhC-CcEEEeccCC
Confidence 99999999998 7888887653 68999999999999875 7889999999999998 6999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.+++.+.+
T Consensus 148 ~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=212.64 Aligned_cols=167 Identities=25% Similarity=0.471 Sum_probs=142.4
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.....+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 80 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ---------------- 80 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG----------------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc----------------
Confidence 3456799999999999999999999999998888888887774 47788888889999999988
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+++..++..+++++|++
T Consensus 81 ---------------------------------------------------------------~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 81 ---------------------------------------------------------------ESFRSITRSYYRGAAGA 97 (191)
T ss_dssp ---------------------------------------------------------------GGTSCCCHHHHTTCSEE
T ss_pred ---------------------------------------------------------------hhhhhhHHHHhccCCEE
Confidence 55666667788899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++
T Consensus 98 i~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 163 (191)
T 2a5j_A 98 LLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESR------------RDVKREEGEAFAREHG-LIFMET 163 (191)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCc------------cccCHHHHHHHHHHcC-CEEEEE
Confidence 9999999999999998 7999887764 58999999999999764 6788899999999998 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+.+++.+.++
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 164 SAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=205.70 Aligned_cols=165 Identities=22% Similarity=0.424 Sum_probs=145.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.++.+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++....+.+|||+|+
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 65 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL----------------- 65 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc-----------------
Confidence 356799999999999999999999999998888999987764 47778888888999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++...+..+++++|+++
T Consensus 66 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 66 --------------------------------------------------------------ERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp --------------------------------------------------------------GGGGGGTHHHHTTCSEEE
T ss_pred --------------------------------------------------------------hhhhcccHhhCcCCCEEE
Confidence 556666677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+++.+. .|+..+... .+..|+++|+||+|+... +++..+++..+++.++ .+++++|
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1z0j_A 84 IVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVETS 149 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999997 899998876 468999999999999765 6788899999999988 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.+.+.+.+
T Consensus 150 a~~~~~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 150 AKNAININELFIEISRRIPS 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCCC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=208.59 Aligned_cols=164 Identities=24% Similarity=0.486 Sum_probs=144.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 74 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ------------------ 74 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC------------------
Confidence 4579999999999999999999999999888999988776 447778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 75 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 75 -------------------------------------------------------------ERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp -------------------------------------------------------------GGTCHHHHHHHHTCSEEEE
T ss_pred -------------------------------------------------------------hHhhhhHHHHhccCCEEEE
Confidence 5555666677889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+++++. .|+..+.... .+.|+++|+||+|+..+ +.+..++++++++.++ ++++++||
T Consensus 94 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 159 (179)
T 1z0f_A 94 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQ------------RDVTYEEAKQFAEENG-LLFLEASA 159 (179)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8998888765 68999999999999754 6788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+++++.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=206.89 Aligned_cols=166 Identities=30% Similarity=0.535 Sum_probs=141.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+||+++|++|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 66 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ----------------- 66 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 34678999999999999999999999999888899998766 457788888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++.+|+++
T Consensus 67 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 67 --------------------------------------------------------------ERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp --------------------------------------------------------------GGGHHHHGGGGTTCSEEE
T ss_pred --------------------------------------------------------------hhhhhhHHHHHhcCCEEE
Confidence 556666677888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+. . +.+..++++++++.....++
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 85 LTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDIS-E------------RQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-S------------CSSCHHHHHHHHHHTTCCCE
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccc-c------------cccCHHHHHHHHHhcCCceE
Confidence 999999999999997 8998887654 578999999999997 3 67888999999995555899
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+++.+++.
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999865
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=211.84 Aligned_cols=166 Identities=23% Similarity=0.454 Sum_probs=144.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.+||+++|++|+|||||+++|.++.+...+.++.+..+.. .+.+++....+.+|||+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 82 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ------------------ 82 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS------------------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc------------------
Confidence 457999999999999999999999999988889999877744 6777788888999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++.+|++++
T Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 83 -------------------------------------------------------------ERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp -------------------------------------------------------------GGGGGGTHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------hhhHhhhHHhhccCCEEEE
Confidence 5566666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++++++.++ ++++++||
T Consensus 102 V~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 167 (192)
T 2fg5_A 102 VYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDI------------REVPLKDAKEYAESIG-AIVVETSA 167 (192)
T ss_dssp EEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTTT-CEEEECBT
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8999988765 58999999999999754 6788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+.+.+.+.+
T Consensus 168 ~~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 168 KNAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp TTTBSHHHHHHHHHHTCC---
T ss_pred CCCcCHHHHHHHHHHHHHhhC
Confidence 999999999999999887654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=216.30 Aligned_cols=168 Identities=27% Similarity=0.453 Sum_probs=138.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.+..+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ------------------ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT------------------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45689999999999999999999999999888999987775 47788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++.+|++++
T Consensus 73 -------------------------------------------------------------~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 73 -------------------------------------------------------------ERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp -------------------------------------------------------------TTTTCCCGGGTTTCCEEEE
T ss_pred -------------------------------------------------------------cchhhhHHHHhccCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..+++..+++.++ ++|+++||
T Consensus 92 V~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 157 (223)
T 3cpj_B 92 VYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHL------------RAVPTEESKTFAQENQ-LLFTETSA 157 (223)
T ss_dssp EEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCC
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8999987764 57999999999999764 6788899999999987 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++|.|++++|+.+++.+.+....
T Consensus 158 ~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999876444
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=206.20 Aligned_cols=166 Identities=28% Similarity=0.516 Sum_probs=139.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|.++.+. ..+.+|++..+.. .+.+++..+.+.+|||+|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 70 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ----------------- 70 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 56799999999999999999999999885 5678888877754 5578888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++++|+++
T Consensus 71 --------------------------------------------------------------~~~~~~~~~~~~~~d~ii 88 (180)
T 2g6b_A 71 --------------------------------------------------------------ERFRSVTHAYYRDAHALL 88 (180)
T ss_dssp ----------------------------------------------------------------------CCGGGCSEEE
T ss_pred --------------------------------------------------------------HHHHHHHHHHccCCCEEE
Confidence 555566677888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+++++. .|+..+.... .+.|+++|+||+|+..+ +.+..++++.+++.++ ++++++|
T Consensus 89 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 154 (180)
T 2g6b_A 89 LLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKREDGEKLAKEYG-LPFMETS 154 (180)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence 999999999999998 8999888765 58999999999999865 7788899999999988 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~ 319 (330)
|++|.|++++|+.+.+.+.+..
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987643
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=207.35 Aligned_cols=163 Identities=27% Similarity=0.369 Sum_probs=129.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||+++|.+..+...+.++.+ +.+...+.+++..+.+.+|||+|++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------------------- 62 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG------------------- 62 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCcc-------------------
Confidence 47999999999999999999998777655555554 4445677888989999999999983
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccc-ccCccccCCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDR-LRPLSYPQTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~-~~~~~~~~~d~~ilv 220 (330)
.+.. ++..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 63 ------------------------------------------------------------DAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp -------------------------------------------------------------------CHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------ccchhhhhhhhccCCEEEEE
Confidence 3332 455567789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+.+. .|+..+..... ++|+++|+||+|+... +.+..++++.+++.++ ++|+++||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (169)
T 3q85_A 83 FSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIETSA 148 (169)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECBT
T ss_pred EECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhhc------------ccCCHHHHHHHHHHcC-CcEEEecC
Confidence 9999999999998 89888877654 8999999999999765 7899999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+..+
T Consensus 149 ~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=199.32 Aligned_cols=167 Identities=30% Similarity=0.516 Sum_probs=137.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+++||+++|++|||||||+.++..+.+...+.+|++..+ ...+.
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 46 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT---------------------------------- 46 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE----------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE----------------------------------
Confidence 7899999999999999999999999999888888875333 22222
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+++..+.+.+|||+|+
T Consensus 47 --------------------------~~~~~~~~~~~D~~G~-------------------------------------- 62 (170)
T 1ek0_A 47 --------------------------INEHTVKFEIWDTAGQ-------------------------------------- 62 (170)
T ss_dssp --------------------------ETTEEEEEEEEEECCS--------------------------------------
T ss_pred --------------------------ECCEEEEEEEEECCCC--------------------------------------
Confidence 2334455677788887
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+++...+..+++++|++++|||++++.+++++. .|+..
T Consensus 63 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~ 100 (170)
T 1ek0_A 63 -----------------------------------------ERFASLAPXYYRNAQAALVVYDVTKPQSFIKAR-HWVKE 100 (170)
T ss_dssp -----------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHH
T ss_pred -----------------------------------------hhhhhhhhhhhccCcEEEEEEecCChHHHHHHH-HHHHH
Confidence 556666677888999999999999999999998 79988
Q ss_pred hhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 240 ITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 240 i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+.... .+.|+++|+||+|+... ...+.+..++++.+++.++ ++++++||++|.|++++|+.+.+.+.+
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 101 LHEQASKDIIIALVGNKIDXLQE---------GGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGS---------SCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred HHHhcCCCCcEEEEEECCCcccc---------ccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 87765 68999999999999754 2236788899999999988 699999999999999999999887754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=210.92 Aligned_cols=168 Identities=27% Similarity=0.520 Sum_probs=148.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ------------------ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45789999999999999999999999999999999876664 57888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 76 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 76 -------------------------------------------------------------ERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp -------------------------------------------------------------GGGCTTHHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HhhhhhHHHHHhhCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++|+++||
T Consensus 95 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (196)
T 3tkl_A 95 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA 160 (196)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEEECT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CcEEEEeC
Confidence 99999999999998 7999887765 57999999999999765 7888899999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++|.|++++|+.+++.+.+...+
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998865443
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=210.74 Aligned_cols=166 Identities=32% Similarity=0.560 Sum_probs=146.4
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 76 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ----------------- 76 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCT-----------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCC-----------------
Confidence 346789999999999999999999999999999999999888888888888899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++.+|+++
T Consensus 77 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 77 --------------------------------------------------------------EDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --------------------------------------------------------------TCCHHHHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------cccHHHHHHHhccCCEEE
Confidence 445555666788899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+|+.+. .|+..+..... ++|+++|+||+|+... +.+..++++.+++.++ ++++++
T Consensus 95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 160 (187)
T 2a9k_A 95 CVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVET 160 (187)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEe
Confidence 999999999999998 89888877654 8999999999999765 6788899999999988 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+++.+.+
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 161 SAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=209.91 Aligned_cols=164 Identities=29% Similarity=0.517 Sum_probs=144.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 81 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ------------------ 81 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc------------------
Confidence 35689999999999999999999999998888899887764 46777888889999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 82 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 82 -------------------------------------------------------------ERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp -------------------------------------------------------------CSSCCSGGGGGTTCSEEEE
T ss_pred -------------------------------------------------------------HHHhhhHHHhccCCCEEEE
Confidence 5555666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 101 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 166 (189)
T 2gf9_A 101 MYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDE------------RVVPAEDGRRLADDLG-FEFFEASA 166 (189)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999998 8999988765 68999999999999764 6788899999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 167 ~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 167 KENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=210.42 Aligned_cols=165 Identities=24% Similarity=0.470 Sum_probs=145.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ------------------ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4579999999999999999999999999888889988666 457778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 70 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 88 (186)
T 2bme_A 70 -------------------------------------------------------------ERFRSVTRSYYRGAAGALL 88 (186)
T ss_dssp -------------------------------------------------------------GGGHHHHHTTSTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhcCCEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..+++..+++..+ ++++++||
T Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 154 (186)
T 2bme_A 89 VYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETSA 154 (186)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEecC
Confidence 99999999999998 8998887654 68999999999999754 6788899999999987 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 155 LTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=207.25 Aligned_cols=166 Identities=29% Similarity=0.511 Sum_probs=144.0
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.+++.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~---------------- 73 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ---------------- 73 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCc----------------
Confidence 356789999999999999999999999999988889987655 557788888889999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+...+..+++++|++
T Consensus 74 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 74 ---------------------------------------------------------------ERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp ---------------------------------------------------------------GGGGGGSHHHHHTCSEE
T ss_pred ---------------------------------------------------------------HHHHHHHHHHhcCCCEE
Confidence 55556666778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++..+ ++++++
T Consensus 91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 156 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK------------RQVSTEEGERKAKELN-VMFIET 156 (179)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc------------CcCCHHHHHHHHHHcC-CeEEEE
Confidence 9999999999999998 8988887654 58999999999999765 6788899999999988 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+.+.+.+
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=200.96 Aligned_cols=163 Identities=31% Similarity=0.551 Sum_probs=135.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.++..+.+...+.+|+.+.+...+.+
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 46 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV---------------------------------- 46 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE----------------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEE----------------------------------
Confidence 8999999999999999999999999999888888875444333332
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
++....+.+|||+|+
T Consensus 47 --------------------------~~~~~~~~l~D~~G~--------------------------------------- 61 (167)
T 1kao_A 47 --------------------------DSSPSVLEILDTAGT--------------------------------------- 61 (167)
T ss_dssp --------------------------TTEEEEEEEEECCCT---------------------------------------
T ss_pred --------------------------CCEEEEEEEEECCCc---------------------------------------
Confidence 334455667788887
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.+..++..+++++|++++|||++++.+++.+. .|+..+
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i 100 (167)
T 1kao_A 62 ----------------------------------------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK-PMRDQI 100 (167)
T ss_dssp ----------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHH-HHHHHH
T ss_pred ----------------------------------------hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHH-HHHHHH
Confidence 555556666788899999999999999999998 788887
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.... .+.|+++|+||+|+... +++..++++.+++.++ ++++++||++|.|++++|+.+++.+.
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 101 IRVKRYEKVPVILVGNKVDLESE------------REVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHTTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEEECCccccc------------ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 6654 58999999999999754 6788899999999987 69999999999999999999988764
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-29 Score=211.47 Aligned_cols=163 Identities=26% Similarity=0.528 Sum_probs=144.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ------------------ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCCh------------------
Confidence 45689999999999999999999999999999999987774 47788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++.+|++++
T Consensus 68 -------------------------------------------------------------~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 68 -------------------------------------------------------------ERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp -------------------------------------------------------------TTTTCCCGGGGTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHhccCCCEEEE
Confidence 5556666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+..+ +.+..+++..+++.++ ++++++||
T Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (206)
T 2bcg_Y 87 VYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MPFLETSA 152 (206)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEECCT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEeC
Confidence 99999999999998 7999887765 67999999999999765 6788899999999988 69999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 153 ~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 153 LDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998875
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=209.20 Aligned_cols=168 Identities=33% Similarity=0.539 Sum_probs=139.4
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
..+|+.+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 79 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ---------------- 79 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCCh----------------
Confidence 4568889999999999999999999999999888999998888888888888889999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+...+..+++.+|++
T Consensus 80 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 80 ---------------------------------------------------------------EEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -------------------------------------------------------------------------CTTCSEE
T ss_pred ---------------------------------------------------------------HHHHHHHHHhhCcCCEE
Confidence 55556667788899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+++++. .|+..+.... .++|+++|+||+|+.. +.+..++++++++.++ +++++
T Consensus 97 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~ 161 (190)
T 3con_A 97 LCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT-------------RTVDTKQAHELAKSYG-IPFIE 161 (190)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCc-------------ccCCHHHHHHHHHHcC-CeEEE
Confidence 9999999999999997 8988887764 4799999999999964 4567889999999998 69999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+||++|.|++++|+.+++.+.+.+
T Consensus 162 ~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 162 TSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-30 Score=215.74 Aligned_cols=166 Identities=27% Similarity=0.490 Sum_probs=146.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 82 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ------------------ 82 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH------------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh------------------
Confidence 45689999999999999999999999998888888877664 47777888888888888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 83 -------------------------------------------------------------ERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp -------------------------------------------------------------HHCHHHHHHHHTTCCEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHccCCEEEE
Confidence 6666677778899999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 167 (191)
T 3dz8_A 102 MYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEE------------RVVPTEKGQLLAEQLG-FDFFEASA 167 (191)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999998 7999998865 68999999999999765 7889999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+++.+.+..
T Consensus 168 ~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 168 KENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=212.11 Aligned_cols=165 Identities=24% Similarity=0.304 Sum_probs=107.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeec-ceEEEEECCc--eeeeeeeecCCCccccccCCCCCCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDN-YAVTVMIGGE--PYTLGLFDTAGQEDYDRLRPLSYPQT 135 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~-~~~~~~~~~~--~~~l~i~Dt~g~~~~~~l~~~~~~~~ 135 (330)
...+||+++|++|||||||+++|.+. .+...+.+|++.. +...+.+++. .+.+.+|||+|+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------- 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS-------------- 83 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT--------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc--------------
Confidence 46789999999999999999999999 8888899999744 4567788877 888899999888
Q ss_pred ceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCC
Q psy9997 136 DVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTD 215 (330)
Q Consensus 136 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d 215 (330)
+.+...+..+++++|
T Consensus 84 -----------------------------------------------------------------~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 84 -----------------------------------------------------------------DLYKEQISQYWNGVY 98 (208)
T ss_dssp -----------------------------------------------------------------HHHHHHHSTTCCCCC
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHhhCc
Confidence 666667778889999
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCC----CCcEEEEEeccCCCC-CchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQ----KTPFLLVGTQIDLRE-DAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilV~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
++++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.. . +.+..+++..+++.++
T Consensus 99 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~~v~~~~~~~~~~~~~- 164 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQR------------HQVRLDMAQDWATTNT- 164 (208)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------------------CCCHHHHHHHHHHTT-
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhh------------ccCCHHHHHHHHHHcC-
Confidence 999999999999999998 89999887754 899999999999976 4 7788999999999998
Q ss_pred eeEEEEeecc-CCCHHHHHHHHHHHhcCC
Q psy9997 291 VKYVECSALT-QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 ~~~~e~Sa~~-~~~v~~~f~~l~~~i~~~ 318 (330)
++++++||++ |.|++++|+.+++.+.+.
T Consensus 165 ~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 165 LDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp CEEEECCC-------CHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 7999999999 999999999999988643
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=205.18 Aligned_cols=163 Identities=29% Similarity=0.580 Sum_probs=136.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 62 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ------------------- 62 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG-------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCC-------------------
Confidence 3689999999999999999999999998888899887664 47777888888888888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 63 ------------------------------------------------------------ERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp ------------------------------------------------------------GGTSCCCHHHHTTEEEEEEE
T ss_pred ------------------------------------------------------------hhhhhhHHHHhccCCEEEEE
Confidence 55566667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++.++++.++ ++++++||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (170)
T 1g16_A 83 YDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSAK 147 (170)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-------------CccCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999998 8998888765 5899999999999932 6678889999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.|++++|+.+.+.+.++
T Consensus 148 ~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=214.09 Aligned_cols=171 Identities=23% Similarity=0.440 Sum_probs=135.0
Q ss_pred EeecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCC
Q psy9997 55 LNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYP 133 (330)
Q Consensus 55 ~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~ 133 (330)
.+.......+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------ 84 (200)
T 2o52_A 17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ------------ 84 (200)
T ss_dssp -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTH------------
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCc------------
Confidence 3444445679999999999999999999999999888889888666 447778888888888998888
Q ss_pred CCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC
Q psy9997 134 QTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213 (330)
Q Consensus 134 ~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~ 213 (330)
+.+..++..+++.
T Consensus 85 -------------------------------------------------------------------~~~~~~~~~~~~~ 97 (200)
T 2o52_A 85 -------------------------------------------------------------------ERFRSVTRSYYRG 97 (200)
T ss_dssp -------------------------------------------------------------------HHHSCCCHHHHTT
T ss_pred -------------------------------------------------------------------HhHHHHHHHHhcc
Confidence 5666667778889
Q ss_pred CCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 214 TDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
+|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..+++..+++..+ ++
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~ 163 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LM 163 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CE
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CE
Confidence 99999999999999999998 8998887754 68999999999999754 6788899999999987 79
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
|+++||++|.|++++|+.+++.+.+.
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=212.37 Aligned_cols=165 Identities=25% Similarity=0.501 Sum_probs=136.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------ 85 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ------------------ 85 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc------------------
Confidence 4579999999999999999999999999888888887655 457778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 86 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 104 (192)
T 2il1_A 86 -------------------------------------------------------------ERFNSITSAYYRSAKGIIL 104 (192)
T ss_dssp -------------------------------------------------------------GGGHHHHHHHHHHCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHhcCCCEEEE
Confidence 5555566667889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+++. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++..+++++||
T Consensus 105 V~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 105 VYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCeEEEEeC
Confidence 99999999999998 8988887765 47999999999999765 7788899999999864579999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 172 ~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 172 KDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=202.55 Aligned_cols=163 Identities=34% Similarity=0.566 Sum_probs=143.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
|+.+||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||++|+
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------------------- 61 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------- 61 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 5678999999999999999999999999888999998888888888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++.+|++++|
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 62 ------------------------------------------------------------EEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp ------------------------------------------------------------SSCCHHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------hhhhHHHHHhhccCCEEEEE
Confidence 44455556677889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+++.+. .|+..+..... +.|+++|+||+|+.. +.+..++++++++.++ ++++++||
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (166)
T 2ce2_X 82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAA-------------RTVESRQAQDLARSYG-IPYIETSA 146 (166)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEEECT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhh-------------cccCHHHHHHHHHHcC-CeEEEecC
Confidence 9999999999997 89988877653 899999999999965 4567888999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 147 KTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=207.76 Aligned_cols=166 Identities=27% Similarity=0.564 Sum_probs=146.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.+..+||+++|++|+|||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 74 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ----------------- 74 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS-----------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc-----------------
Confidence 35679999999999999999999999999989999987766 457788888899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++.+|+++
T Consensus 75 --------------------------------------------------------------~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 75 --------------------------------------------------------------ERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp --------------------------------------------------------------GGGCCSHHHHHTTCCEEE
T ss_pred --------------------------------------------------------------hhhhhhhHHHhccCCEEE
Confidence 555666677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. +.+..+++..+++.++ ++|+++
T Consensus 93 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEA 157 (195)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-------------cccCHHHHHHHHHHcC-CEEEEe
Confidence 999999999999998 8999988764 5799999999999943 6678889999999987 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
||++|.|++++|+.+++.+.+.+
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999998653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=209.54 Aligned_cols=165 Identities=26% Similarity=0.463 Sum_probs=140.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.++.+||+++|++|+|||||+++|.++.+...+.++++..+ ...+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 79 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------------- 79 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 35679999999999999999999999999988899998766 457788888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~ 217 (330)
+++. .++..+++++|++
T Consensus 80 --------------------------------------------------------------~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 80 --------------------------------------------------------------ERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp --------------------------------------------------------------HHHHTTTHHHHHTTCCEE
T ss_pred --------------------------------------------------------------hhhhhhhhHHHhcCCCEE
Confidence 5554 5566678899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+|+.+. .|+.++.... .+.|+++|+||+|+... +++..++++.+++.++ ++|++
T Consensus 98 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~ 163 (189)
T 1z06_A 98 VFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSA------------IQVPTDLAQKFADTHS-MPLFE 163 (189)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CCEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceeCHHHHHHHHHHcC-CEEEE
Confidence 9999999999999998 7999887764 68999999999999764 6788899999999988 69999
Q ss_pred EeeccC---CCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQ---KGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~---~~v~~~f~~l~~~i~~ 317 (330)
+||++| .|++++|+.+++.+.+
T Consensus 164 ~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 164 TSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp CCSSSGGGGSCHHHHHHHHC-----
T ss_pred EeCCcCCcccCHHHHHHHHHHHHhh
Confidence 999999 9999999999887643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=210.05 Aligned_cols=163 Identities=27% Similarity=0.510 Sum_probs=144.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|.+..+...+.+|.+..+. ..+..++..+.+.+|||+|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 67 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL------------------- 67 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc-------------------
Confidence 4689999999999999999999999998888999987664 57778888889999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 68 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 68 ------------------------------------------------------------ERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp ------------------------------------------------------------GGGHHHHHTTGGGCSEEEEE
T ss_pred ------------------------------------------------------------hhhcchHHHhhcCCCEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++||+
T Consensus 88 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (203)
T 1zbd_A 88 YDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDE------------RVVSSERGRQLADHLG-FEFFEASAK 153 (203)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTS------------CCSCHHHHHHHHHHHT-CEEEECBTT
T ss_pred EECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHCC-CeEEEEECC
Confidence 9999999999998 8999987765 58999999999999765 6788899999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+++.+.+
T Consensus 154 ~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=212.26 Aligned_cols=165 Identities=30% Similarity=0.464 Sum_probs=144.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
....+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 86 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ------------------ 86 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCC------------------
Confidence 35679999999999999999999999999999999999888888888999999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+. ...+..+++.+|++++
T Consensus 87 -------------------------------------------------------------~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 87 -------------------------------------------------------------ED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -------------------------------------------------------------CC-CHHHHHHHHHCSEEEE
T ss_pred -------------------------------------------------------------Cc-ccchhhhhccCCEEEE
Confidence 22 3344556788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
|||++++++|+.+. .|+..+.... .++|+++|+||+|+... +.+..+++..+++.++ ++|+++|
T Consensus 105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 170 (196)
T 2atv_A 105 VYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFYECS 170 (196)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEEECC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHhC-CeEEEEC
Confidence 99999999999998 7988887753 58999999999999765 7788999999999997 7999999
Q ss_pred eccCC-CHHHHHHHHHHHhcCC
Q psy9997 298 ALTQK-GLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~-~v~~~f~~l~~~i~~~ 318 (330)
|++|. |++++|+.+++.+.+.
T Consensus 171 a~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 171 ACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp TTTCTTCHHHHHHHHHHHHHHH
T ss_pred CCcCCcCHHHHHHHHHHHHHhh
Confidence 99999 9999999999988653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-29 Score=205.03 Aligned_cols=163 Identities=26% Similarity=0.470 Sum_probs=141.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+|||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~-------------------- 61 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS-------------------- 61 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSC--------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 468999999999999999999999999888899998888777788888888999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..+++.+|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 62 -----------------------------------------------------------HQFPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp -----------------------------------------------------------SSCHHHHHHHHHHCSEEEEEE
T ss_pred -----------------------------------------------------------hhhHHHHHHhcccCCEEEEEE
Confidence 444555566778899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|++++.+++.+. .|+..+.+.. ++.|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 83 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 148 (172)
T 2erx_A 83 SITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETSA 148 (172)
T ss_dssp ETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred ECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEecC
Confidence 999999999988 7887776653 57999999999999765 6778888999999987 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+++++.+.+
T Consensus 149 ~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 149 KLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TTTBSHHHHHHHHHHTCCS
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999987654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=202.67 Aligned_cols=100 Identities=23% Similarity=0.409 Sum_probs=86.1
Q ss_pred ccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH
Q psy9997 206 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK 283 (330)
Q Consensus 206 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 283 (330)
+++.+++.+|++++|||+++++||+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~------------r~v~~~~~~~ 139 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRX------------REVSVSEGRA 139 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGG------------CCSCHHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhcc------------ccccHHHHHH
Confidence 4566778899999999999999999998 7887776642 57999999999999754 7788889999
Q ss_pred HHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 284 LAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 284 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++..++ ++|+|+||++|.||+++|+.+++.+....
T Consensus 140 ~a~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 140 XAVVFD-XKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 998887 69999999999999999999999886443
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=207.52 Aligned_cols=166 Identities=25% Similarity=0.442 Sum_probs=145.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 84 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL----------------- 84 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCC-----------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 345799999999999999999999999998888899887764 47777888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 85 --------------------------------------------------------------~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 85 --------------------------------------------------------------ERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp --------------------------------------------------------------CTTCTTHHHHHTTCCEEE
T ss_pred --------------------------------------------------------------hhhhhhhHHHhccCCEEE
Confidence 555566667788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++..+ ++++++|
T Consensus 103 ~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 168 (193)
T 2oil_A 103 LVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQA------------REVPTEEARMFAENNG-LLFLETS 168 (193)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999998 8998887764 58999999999999765 6788899999999987 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+.+++.++++
T Consensus 169 a~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-29 Score=211.27 Aligned_cols=170 Identities=29% Similarity=0.456 Sum_probs=134.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+|||+|+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 87 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ------------------ 87 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC------------------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC------------------
Confidence 45799999999999999999999999998888899987774 57888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 88 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 88 -------------------------------------------------------------ERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -------------------------------------------------------------TTCHHHHHHHHHHCSEEEE
T ss_pred -------------------------------------------------------------cchhhhHHHHHhhCCEEEE
Confidence 5555556667888999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+++. .|+..+.... .+.|+++|+||+|+.... .....+.+..++++.+++.++ ++|+++||
T Consensus 107 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~------~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA 178 (199)
T 2p5s_A 107 LYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTA------ATEGQKCVPGHFGEKLAMTYG-ALFCETSA 178 (199)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHH------HHTTCCCCCHHHHHHHHHHHT-CEEEECCT
T ss_pred EEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccc------ccccccccCHHHHHHHHHHcC-CeEEEeeC
Confidence 99999999999998 8998887764 579999999999996321 112347788999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 179 ~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-28 Score=205.70 Aligned_cols=167 Identities=31% Similarity=0.535 Sum_probs=130.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.++ +....+.+|||+|+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 68 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ----------------- 68 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC-----------------
Confidence 45789999999999999999999999998888898876654 456665 55677788888877
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++.+|+++
T Consensus 69 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 69 --------------------------------------------------------------ERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp ----------------------------------------------------------------------CCSTTCCEEE
T ss_pred --------------------------------------------------------------hHhhhhhHHHhhcCCEEE
Confidence 666666777888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... .+.+..++++.+++..+..++
T Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 87 LVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----------GCCSCHHHHHHHHHHTTSCCE
T ss_pred EEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCccccc-----------cccCCHHHHHHHHHhcCCCeE
Confidence 999999999999998 8988887654 57899999999999643 156788999999986555899
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+++.++++
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-29 Score=208.74 Aligned_cols=167 Identities=27% Similarity=0.461 Sum_probs=141.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce--EEEEECCc---------eeeeeeeecCCCccccccC
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA--VTVMIGGE---------PYTLGLFDTAGQEDYDRLR 128 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~Dt~g~~~~~~l~ 128 (330)
....+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+..++. .+.+.+|||+|+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------- 80 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL------- 80 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS-------
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc-------
Confidence 345799999999999999999999999998888899887765 34555544 456666666666
Q ss_pred CCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC
Q psy9997 129 PLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP 208 (330)
Q Consensus 129 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~ 208 (330)
+.+...+.
T Consensus 81 ------------------------------------------------------------------------~~~~~~~~ 88 (195)
T 3bc1_A 81 ------------------------------------------------------------------------ERFRSLTT 88 (195)
T ss_dssp ------------------------------------------------------------------------GGGHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 66777777
Q ss_pred ccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 209 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 209 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
.+++++|++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQ------------RAVKEEEARELAE 155 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGG------------CCSCHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHH
Confidence 7889999999999999999999998 8999888765 58999999999999764 6788899999999
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.++ ++++++||++|.|++++|+.+.+.+.++.
T Consensus 156 ~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 156 KYG-IPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HcC-CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 998 69999999999999999999999887543
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-30 Score=221.01 Aligned_cols=177 Identities=72% Similarity=1.218 Sum_probs=148.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 88 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ------------------- 88 (204)
Confidence 5679999999999999999999999999889999998888777777777778888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 89 ------------------------------------------------------------~~~~~~~~~~~~~~d~iilv 108 (204)
T 3th5_A 89 ------------------------------------------------------------EDYDRLRPLSYPQTDVFLIC 108 (204)
Confidence 66666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+++...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||++
T Consensus 109 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~ 188 (204)
T 3th5_A 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 188 (204)
Confidence 99999999999876799888887778999999999999765332222222333577888899999998844899999999
Q ss_pred CCCHHHHHHHHHHHhc
Q psy9997 301 QKGLKNVFDEAILAAL 316 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~ 316 (330)
|.|++++|+.+++.++
T Consensus 189 g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 189 QRGLKTVFDEAIRAVL 204 (204)
Confidence 9999999999987763
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-28 Score=221.59 Aligned_cols=178 Identities=70% Similarity=1.213 Sum_probs=156.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+||+++|++|+|||||+++|..+.+...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--------------------- 213 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--------------------- 213 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCC---------------------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 48999999999999999999999999999999999998888889999999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++++|++++|||
T Consensus 214 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 235 (332)
T 2wkq_A 214 ----------------------------------------------------------EDYDRLRPLSYPQTDVFLICFS 235 (332)
T ss_dssp ----------------------------------------------------------GGGTTTGGGGCTTCSEEEEEEE
T ss_pred ----------------------------------------------------------hhhhHHHHHhccCCCEEEEEEe
Confidence 5566667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++.+|+++...|+..+.....++|+++|+||+|+...............+.+..+++..+++.++..+|+++||++|.
T Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 315 (332)
T 2wkq_A 236 LVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 315 (332)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 99999999997679999888777999999999999976544444444555688999999999999985599999999999
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy9997 303 GLKNVFDEAILAALEPP 319 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~ 319 (330)
|++++|+.+++.+++++
T Consensus 316 gi~~l~~~l~~~~~~~~ 332 (332)
T 2wkq_A 316 GLKTVFDEAIRAVLCPP 332 (332)
T ss_dssp THHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999999999998753
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=207.76 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=89.2
Q ss_pred cccccccCccccCCCEEEEEEEcC------ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVV------SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~ 274 (330)
+++..++..+++++|++++|||++ +.++|+.+. .|+.++.....++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~-------------- 149 (198)
T 3t1o_A 85 VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPD-------------- 149 (198)
T ss_dssp CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTT--------------
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhccc--------------
Confidence 566666777888999999999999 678888887 79988866668999999999999964
Q ss_pred CcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 275 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+..++++++++.++..+|+++||++|.|++++|+.+++.+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 150 ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 378889999999988449999999999999999999999887643
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=205.14 Aligned_cols=164 Identities=27% Similarity=0.528 Sum_probs=141.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 67 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ------------------ 67 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSS------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4578999999999999999999999999989999987665 447777888888999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 68 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 68 -------------------------------------------------------------ERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp -------------------------------------------------------------GGGSCSCCGGGTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHhHHHHHhCCcEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++..+++.....+++
T Consensus 87 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~ 152 (207)
T 1vg8_A 87 VFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPYF 152 (207)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-------------cccCHHHHHHHHHhcCCceEE
Confidence 99999999999997 8988877654 4789999999999973 667888899999854457999
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++||++|.|++++|+.+++.+.+
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988763
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=210.72 Aligned_cols=164 Identities=29% Similarity=0.502 Sum_probs=139.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCc----------eeeeeeeecCCCccccccCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGE----------PYTLGLFDTAGQEDYDRLRP 129 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~----------~~~l~i~Dt~g~~~~~~l~~ 129 (330)
...+||+++|++|||||||+++|.+..+...+.+|++..+. ..+.+++. .+.+.+|||+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------- 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-------- 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc--------
Confidence 45799999999999999999999999998888888876664 35555554 455555565555
Q ss_pred CCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc
Q psy9997 130 LSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL 209 (330)
Q Consensus 130 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~ 209 (330)
+++...+..
T Consensus 95 -----------------------------------------------------------------------~~~~~~~~~ 103 (217)
T 2f7s_A 95 -----------------------------------------------------------------------ERFRSLTTA 103 (217)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HhHHhHHHH
Confidence 777777778
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+++.+|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.+++.
T Consensus 104 ~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 104 FFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQ------------REVNERQARELADK 170 (217)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGG------------CCSCHHHHHHHHHH
T ss_pred HhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCccccc------------cccCHHHHHHHHHH
Confidence 889999999999999999999998 8998887765 68999999999999764 67888999999999
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++ ++++++||++|.|++++|+.+++.+.+
T Consensus 171 ~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 YG-IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TT-CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CC-CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 88 699999999999999999999988865
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-28 Score=204.56 Aligned_cols=198 Identities=19% Similarity=0.322 Sum_probs=142.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|++..+...+.+|++..+.. .+.+++.........+... .+... ... ....
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~--~~~~ 78 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN----NINSI-NDD--NNVI 78 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC--------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccc----ccccc-ccc--cccc
Confidence 46899999999999999999999999999999998776643 5555543322111111000 00000 000 0000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
. ....+ ..........+.+||++|++.+...+..+++.+|++++|
T Consensus 79 ~---------------------------------~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 123 (208)
T 3clv_A 79 I---------------------------------TNQHN--NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVV 123 (208)
T ss_dssp -----------------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEE
T ss_pred c---------------------------------ccccc--cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 0 00000 000112235678999999999999999999999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+++.+. .|+..+..... .|+++|+||+| ... +.+..++++++++.++ ++++++||++
T Consensus 124 ~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D-~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 187 (208)
T 3clv_A 124 FDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID-KNK------------FQVDILEVQKYAQDNN-LLFIQTSAKT 187 (208)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-CC-------------CCSCHHHHHHHHHHTT-CEEEEECTTT
T ss_pred EECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-ccc------------ccCCHHHHHHHHHHcC-CcEEEEecCC
Confidence 9999999999998 89999887654 99999999999 333 6788899999999987 6999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+++++.+.+
T Consensus 188 ~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 188 GTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-29 Score=212.69 Aligned_cols=165 Identities=27% Similarity=0.521 Sum_probs=135.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ------------------ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45799999999999999999999999998888888877664 57788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 93 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 111 (199)
T 3l0i_B 93 -------------------------------------------------------------ERFRTITSSYYRGAHGIIV 111 (199)
T ss_dssp -------------------------------------------------------------TTCCCCSCC--CCCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHhhcCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 112 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSA 177 (199)
T 3l0i_B 112 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA 177 (199)
T ss_dssp CC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--------------CCCCSCC-CHHHHTTT-CCBCCCCC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCcc------------ccCCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999998 8999987765 47999999999999765 6677777888999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 178 ~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 178 KNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp ---HHHHHHHHHHTTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998887654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-28 Score=206.74 Aligned_cols=169 Identities=25% Similarity=0.344 Sum_probs=138.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEEC-CceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
....+||+++|++|||||||+++|+++.+...+.+|.+..+.. ..... +..+.+.+|||+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 71 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ---------------- 71 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG----------------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc----------------
Confidence 3467999999999999999999999999888888888766544 33332 33377888888887
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+..++..+++++|++
T Consensus 72 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 72 ---------------------------------------------------------------EKKAVLKDVYYIGASGA 88 (218)
T ss_dssp ---------------------------------------------------------------GGTSCCCHHHHTTCSEE
T ss_pred ---------------------------------------------------------------hhhchHHHHHhhcCCEE
Confidence 55666677778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+++++. .|+..+..... +.|+++|+||+|+... +.+..+++..+++..+ ++|+++
T Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 154 (218)
T 4djt_A 89 ILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNR------------QKISKKLVMEVLKGKN-YEYFEI 154 (218)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCC-CEEEEE
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CcEEEE
Confidence 9999999999999998 89999877654 5999999999999764 6788899999999887 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
||++|.|++++|+.+.+.+.+....
T Consensus 155 Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 155 SAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp BTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred ecCCCCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999999876544
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=204.01 Aligned_cols=163 Identities=30% Similarity=0.579 Sum_probs=141.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.++++..+. ..+.+++..+.+.+|||+|+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 79 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ------------------ 79 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 34689999999999999999999999998888899887764 47778888888999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 80 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 80 -------------------------------------------------------------ERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -------------------------------------------------------------GGGTCCCHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHhccCCEEEE
Confidence 5556666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+. . +.+..+++..+++.++ ++++++||
T Consensus 99 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~-~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 163 (213)
T 3cph_A 99 VYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-T------------RVVTADQGEALAKELG-IPFIESSA 163 (213)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCS-S------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCc-c------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8998887765 479999999999993 3 6678889999999988 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+.+.+.+
T Consensus 164 ~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 164 KNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-28 Score=210.26 Aligned_cols=167 Identities=25% Similarity=0.458 Sum_probs=142.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
..+..+||+++|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 74 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ---------------- 74 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG----------------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh----------------
Confidence 446679999999999999999999999888888888887665 447778888889999999988
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+..++..+++++|++
T Consensus 75 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 75 ---------------------------------------------------------------EKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp ---------------------------------------------------------------GGTSCCCHHHHTTCCEE
T ss_pred ---------------------------------------------------------------HHHhHHHHHHHhcCCEE
Confidence 55666677788899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|||++++.+|+++. .|+..+.....++|+++|+||+|+... .+. +++..+++..+ ++|+++|
T Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~S 155 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR-------------KVK-AKSIVFHRKKN-LQYYDIS 155 (221)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSC-------------SSC-GGGCCHHHHHT-CEEEECB
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCccccc-------------ccc-HHHHHHHHHcC-CEEEEEe
Confidence 9999999999999998 899999988889999999999999753 122 24556778887 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
|++|.|++++|+.+.+.+.+.+.
T Consensus 156 a~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 156 AKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp GGGTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999987644
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=202.29 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=125.2
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCC-CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
......||+++|++|||||||+++|.+..+.. .+.+|++..+. .+++..+.+.+|||+|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~---------------- 73 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE---TFEKGRVAFTVFDMGGA---------------- 73 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE---EEEETTEEEEEEEECCS----------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE---EEEeCCEEEEEEECCCC----------------
Confidence 34567899999999999999999999999988 88898874332 23455677788888887
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+++..++..+++++|++
T Consensus 74 ---------------------------------------------------------------~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 74 ---------------------------------------------------------------KKFRGLWETYYDNIDAV 90 (199)
T ss_dssp ---------------------------------------------------------------GGGGGGGGGGCTTCSEE
T ss_pred ---------------------------------------------------------------HhHHHHHHHHHhcCCEE
Confidence 66667777788999999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC---------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-HH
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC---------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-KE 287 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~---------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 287 (330)
++|||++++++|+.+. .|+..+.... .++|+++|+||+|+...... .++......... +.
T Consensus 91 i~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVK-SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---------AELVEILDLTTLMGD 160 (199)
T ss_dssp EEEEETTCGGGHHHHH-HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---------HHHHHHHTHHHHHTT
T ss_pred EEEEECCcHHHHHHHH-HHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---------HHHHHHhcchhhccC
Confidence 9999999999999998 7877765542 28999999999999764110 011111111111 33
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.+ ++|+++||++|.|++++|+.+++.+.+....
T Consensus 161 ~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 161 HP-FVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp SC-EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred Ce-eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 44 7899999999999999999999998765443
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-27 Score=198.88 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=120.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+. .+.||++... ..+.+++ +.+.+|||+|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~l~i~Dt~G~------------------- 79 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELTIAG--MTFTTFDLGGH------------------- 79 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC--------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee-EEEEECC--EEEEEEECCCc-------------------
Confidence 55789999999999999999999998864 5677776653 4555555 67788888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.++.++..+++++|++++|
T Consensus 80 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 80 ------------------------------------------------------------IQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp ---------------------------------------------------------------CCGGGGGGGGCSEEEEE
T ss_pred ------------------------------------------------------------HhhHHHHHHHHhcCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----------
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL---------- 288 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------- 288 (330)
||++++++|+++. .|+..+.+. ..++|+++|+||+|+.. .++.+++.+++...
T Consensus 100 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 100 VDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPE--------------AISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTT--------------CCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred EECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCccc--------------cCCHHHHHHHhCcccccccccccc
Confidence 9999999999998 788877654 36899999999999963 35666777666532
Q ss_pred ------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 ------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 ------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
...+|+++||++|.|++++|+++.+.+
T Consensus 165 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 165 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346899999999999999999987653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-28 Score=203.57 Aligned_cols=166 Identities=21% Similarity=0.310 Sum_probs=118.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeecceE-EEEE---CCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNYAV-TVMI---GGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~~~~-~~~~---~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
++||+++|++|||||||+++|.+. .+...+.+|++..+.. .+.+ ++..+.+.+|||+|+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------- 66 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--------------- 66 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC---------------
Confidence 579999999999999999999985 5667778888765533 2222 234556666666666
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
++|..+++.+++++++
T Consensus 67 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 82 (184)
T 2zej_A 67 ----------------------------------------------------------------EEFYSTHPHFMTQRAL 82 (184)
T ss_dssp ----------------------------------------------------------------HHHHTTSHHHHHHSEE
T ss_pred ----------------------------------------------------------------HHHHHhhHHHccCCcE
Confidence 6666677778888999
Q ss_pred EEEEEEcCCh-hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC---HHHHHHHHHHhCCee
Q psy9997 217 FLVCFSVVSP-SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS---FEQGEKLAKELKAVK 292 (330)
Q Consensus 217 ~ilv~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~ 292 (330)
+++|||++++ .+|+.+. .|+.++....++.|+++||||+|+..+ +.+. .+++..+++.++ ++
T Consensus 83 ~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~-~~ 148 (184)
T 2zej_A 83 YLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDE------------KQRKACMSKITKELLNKRG-FP 148 (184)
T ss_dssp EEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCH------------HHHHHHHHHHHHHTTTCTT-SC
T ss_pred EEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccc------------hhhHHHHHHHHHHHHHhcC-Cc
Confidence 9999999997 5899998 899998877678999999999999753 2222 345667777676 44
Q ss_pred ----EEEEeeccCC-CHHHHHHHHHHHhcCCCCC
Q psy9997 293 ----YVECSALTQK-GLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 293 ----~~e~Sa~~~~-~v~~~f~~l~~~i~~~~~~ 321 (330)
|+++||++|. +++++++.+.+.+.+.+.+
T Consensus 149 ~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~ 182 (184)
T 2zej_A 149 AIRDYHFVNATEESDALAKLRKTIINESLNFKIR 182 (184)
T ss_dssp EEEEEEECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred chhheEEEecccCchhHHHHHHHHHHHHhccccC
Confidence 9999999996 9999999999988775543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=194.25 Aligned_cols=156 Identities=20% Similarity=0.316 Sum_probs=122.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+|||+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~------------------- 77 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGH------------------- 77 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCS-------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCC-------------------
Confidence 45689999999999999999999998874 567777664 34555555 67788888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 78 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 78 ------------------------------------------------------------IQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ------------------------------------------------------------GGGTTSGGGGCTTCCEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 55666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----------
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL---------- 288 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------- 288 (330)
||++++++|+++. .|+..+.+. ..++|+++|+||+|+... ++.+++.++.+..
T Consensus 98 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 98 VDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNA--------------VSEAELRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC--------------CCHHHHHHHTTCSSCCC---CCS
T ss_pred EECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCC--------------CCHHHHHHHhCCccccccccccc
Confidence 9999999999998 788777654 368999999999999642 4455555544321
Q ss_pred -CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 289 -KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 289 -~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..++|+++||++|.|++++|+.+.+.
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 23689999999999999999998764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-27 Score=200.78 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=125.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+||+++|++|||||||+++|.++.+...+.||++..+.. ++...+.+.+|||+|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~------------------ 77 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQ------------------ 77 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCS------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCC------------------
Confidence 3567999999999999999999999999988888988776643 2334567778888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 78 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 78 -------------------------------------------------------------PRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp -------------------------------------------------------------HHHHTTHHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHHccCCEEEE
Confidence 6666666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVK 292 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 292 (330)
|||++++++|+.+. .|+..+... ..+.|+++|+||+|+.... ..++..... ... .++
T Consensus 97 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~-~~~ 160 (188)
T 1zd9_A 97 MVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGAL--------------DEKELIEKMNLSAIQDR-EIC 160 (188)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCC--------------CHHHHHHHTTGGGCCSS-CEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHhCcccCCCCEEEEEECCCCccCC--------------CHHHHHHHhChhhhccC-Cee
Confidence 99999999999998 777776554 3689999999999997531 112211111 112 367
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++||++|.|++++|+++++.+.+.
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999887654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-26 Score=192.51 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=124.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCC-CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.+||+++|++|+|||||+++|.+.. +...+.+|.+.. ...+.+++ ..+.+|||+|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~------------------ 77 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQ------------------ 77 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCS------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCC------------------
Confidence 457999999999999999999999988 677788887632 33444443 67778888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 78 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 78 -------------------------------------------------------------GRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp -------------------------------------------------------------TTTGGGGGGGGGGCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhcCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH--Hh--CCe
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK--EL--KAV 291 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~--~~~ 291 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... ...+++.++.. .. ..+
T Consensus 97 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 2h57_A 97 VIDSSDRLRMVVAK-EELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIKDKPW 161 (190)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCE
T ss_pred EEECCCHHHHHHHH-HHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhccCCce
Confidence 99999999999998 7877776553 57999999999999643 34455555553 11 136
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+++++||++|.|++++|+.+.+.+.+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999988754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-26 Score=193.20 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=122.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+. .+.||++... ..+.++ ...+.+|||+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~------------------- 70 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVIN--NTRFLMWDIGGQ------------------- 70 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEET--TEEEEEEECCC--------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEEC--CEEEEEEECCCC-------------------
Confidence 45789999999999999999999988876 6677776332 344444 366777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 71 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 71 ------------------------------------------------------------ESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp ---------------------------------------------------------------CGGGHHHHTTCCEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhcCCCEEEEE
Confidence 55666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----HhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----ELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~ 293 (330)
||++++++|+.+. .|+..+... ..+.|+++|+||+|+... ...+++.+... ..+ +++
T Consensus 91 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~~ 154 (187)
T 1zj6_A 91 VDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQ-WHI 154 (187)
T ss_dssp EETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSC-EEE
T ss_pred EeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCC--------------CCHHHHHHHhChhhhcCCC-cEE
Confidence 9999999999998 788887765 368999999999999643 23344433332 223 689
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+++||++|.|++++|+++++.+.+.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHCC----
T ss_pred EEccCCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998766544
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-27 Score=195.12 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=116.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|.++.|.. +.||++... ..+ +.....+.+|||+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~---------------------- 54 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETV--EYKNISFTVWDVGGQ---------------------- 54 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE-EEE--ECSSCEEEEEECCCC----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE-EEE--EECCEEEEEEEcCCC----------------------
Confidence 589999999999999999999988764 567776322 222 234567777777777
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++...+..+++++|++++|||+
T Consensus 55 ---------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 55 ---------------------------------------------------------DKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp ---------------------------------------------------------GGGHHHHHHHTTTCSEEEEEEET
T ss_pred ---------------------------------------------------------hhhHHHHHHHhccCCEEEEEEEC
Confidence 66666667788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-----HHHHhCCeeEEEE
Q psy9997 224 VSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-----LAKELKAVKYVEC 296 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~ 296 (330)
+++++|+.+. .|+..+... ..+.|+++|+||+|+..+ ...++... +++..+ ++++++
T Consensus 78 ~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~ 141 (164)
T 1r8s_A 78 NDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRHRN-WYIQAT 141 (164)
T ss_dssp TCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCSSCC-EEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCC--------------CCHHHHHHHhCcccccCcc-EEEEEc
Confidence 9999999998 787776553 368999999999999653 11122211 111222 679999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+.+.+.+
T Consensus 142 Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 142 CATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp BTTTTBTHHHHHHHHHHHC--
T ss_pred ccCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999988754
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=197.36 Aligned_cols=169 Identities=14% Similarity=0.177 Sum_probs=124.1
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE---EEEEC-CceeeeeeeecCCCccccccCCCCCC
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV---TVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYP 133 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~---~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~ 133 (330)
..+...+||+++|++|||||||++++.+ .+... ++.+..+.. ...+. +..+.+++|||+|+
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------ 79 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ------------ 79 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSS------------
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCC------------
Confidence 3456689999999999999999997665 44333 444443322 22232 56677777777777
Q ss_pred CCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc---Ccc
Q psy9997 134 QTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR---PLS 210 (330)
Q Consensus 134 ~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~---~~~ 210 (330)
++|.... ..+
T Consensus 80 -------------------------------------------------------------------~~~~~~~~~~~~~ 92 (196)
T 3llu_A 80 -------------------------------------------------------------------MDFFDPTFDYEMI 92 (196)
T ss_dssp -------------------------------------------------------------------CCTTCTTCCHHHH
T ss_pred -------------------------------------------------------------------HHHHhhhhhcccc
Confidence 5554444 577
Q ss_pred ccCCCEEEEEEEcCCh--hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH--
Q psy9997 211 YPQTDVFLVCFSVVSP--SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-- 286 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 286 (330)
++++|++++|||++++ +++..+. .|+..+....+++|+++||||+|+..+....+. .+.+..+++..+++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET-----QRDIHQRANDDLADAG 166 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH-----HHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHH-----HhHHHHHHHHHHHHhh
Confidence 8899999999999997 7777777 788877666789999999999999764221111 25677788888998
Q ss_pred --HhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 287 --ELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 287 --~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.++ ++|+++||++ .|++++|+.+++.++
T Consensus 167 ~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 167 LEKLH-LSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CTTSC-EEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred hhcCC-cceEEEEech-hhHHHHHHHHHHHhC
Confidence 555 7999999999 999999999998874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=190.13 Aligned_cols=163 Identities=15% Similarity=0.198 Sum_probs=121.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..+||+++|++|+|||||+++|.++.+. .+.||.+..+ ..+.++ ...+.+|||+|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~-------------------- 61 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV-ETVTYK--NLKFQVWDLGGL-------------------- 61 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE-EEEEET--TEEEEEEEECCC--------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce-EEEEEC--CEEEEEEECCCC--------------------
Confidence 4689999999999999999999998875 4567765432 234443 466777787777
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..+++++|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 62 -----------------------------------------------------------TSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp -----------------------------------------------------------GGGGGGGGGGCTTCSEEEEEE
T ss_pred -----------------------------------------------------------hhhhHHHHHHhccCCEEEEEE
Confidence 666666777888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+...... +++.......+++..+ ++++++||+
T Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 151 (171)
T 1upt_A 83 DSCDRDRIGISK-SELVAMLEEEELRKAILVVFANKQDMEQAMTS---------SEMANSLGLPALKDRK-WQIFKTSAT 151 (171)
T ss_dssp ETTCCTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---------HHHHHHHTGGGCTTSC-EEEEECCTT
T ss_pred ECCCHHHHHHHH-HHHHHHHhchhhCCCEEEEEEECCCCcCCCCH---------HHHHHHhCchhccCCc-eEEEECcCC
Confidence 999999999998 6776665542 68999999999999764110 0111111111222333 689999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.|++++|+.+.+.+.+.
T Consensus 152 ~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999988654
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=203.22 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=87.1
Q ss_pred ccccccccccccccCcccc---------------------CCCEEEEEEEcCCh--hhHhhhhhcchhhhhhc--CCCCc
Q psy9997 194 LFDTAGQEDYDRLRPLSYP---------------------QTDVFLVCFSVVSP--SSFENVKEKWVPEITHH--CQKTP 248 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~---------------------~~d~~ilv~d~~~~--~s~~~~~~~~~~~i~~~--~~~~p 248 (330)
.+.++|+++|..++..+++ +||++++|||++++ .+|+.+. .|+.++... ..++|
T Consensus 122 ~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~-~~l~~i~~~~~~~~~p 200 (255)
T 3c5h_A 122 YIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKP 200 (255)
T ss_dssp HHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHH-HHHHHHHHHHHHTTCC
T ss_pred ccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHH-HHHHHHHHHhccCCCC
Confidence 3456667777777777776 89999999999999 9999998 899988765 36899
Q ss_pred EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 249 iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+++|+||+|+... +.+ ++++++++....++|+++||++|.|++++|+.+++.+.
T Consensus 201 iilV~NK~Dl~~~------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 201 IVVVLTKCDEGVE------------RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEEEEECGGGBCH------------HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEEccccccc------------HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9999999999643 333 57888887743479999999999999999999988763
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-26 Score=191.03 Aligned_cols=157 Identities=21% Similarity=0.320 Sum_probs=119.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+.+||+++|++|||||||+++|.++.+ ..+.+|.+..+ ..+.+++ ..+.+|||+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~----------------- 75 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQ----------------- 75 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSS-----------------
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCC-----------------
Confidence 345679999999999999999999999987 56667776443 3444443 66777787777
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 76 --------------------------------------------------------------~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 76 --------------------------------------------------------------ESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --------------------------------------------------------------GGGTCGGGGGGTTCCEEE
T ss_pred --------------------------------------------------------------HhHHHHHHHHhccCCEEE
Confidence 666667777889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----HhCCe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----ELKAV 291 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 291 (330)
+|||++++++|+.+. .|+..+... ..+.|+++|+||+|+... ...+++..... ..+ +
T Consensus 94 ~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~ 157 (181)
T 2h17_A 94 VVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQ-W 157 (181)
T ss_dssp EEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCCSSC-E
T ss_pred EEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcccC--------------CCHHHHHHHhCcccccCCc-e
Confidence 999999999999998 677776654 368999999999999653 22333333321 222 6
Q ss_pred eEEEEeeccCCCHHHHHHHHHHH
Q psy9997 292 KYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+++++||++|.|++++|+.+++.
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHHHTC
T ss_pred EEEEccCCCCcCHHHHHHHHHhh
Confidence 89999999999999999998764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=189.10 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=124.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++.++. ...+.||++... ..+.++ ...+.+|||+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~------------------- 72 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHR--GFKLNIWDVGGQ------------------- 72 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEET--TEEEEEEEECCS-------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEEC--CEEEEEEECCCC-------------------
Confidence 467999999999999999999999888 777888887443 234443 467778888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 73 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 73 ------------------------------------------------------------KSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp ------------------------------------------------------------HHHHTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhcCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----HhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----ELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~ 293 (330)
||++++.+|+++. .|+..+... ..+.|+++|+||+|+..+ ...++..+... .. .+++
T Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~-~~~~ 156 (186)
T 1ksh_A 93 VDSADRQRMQDCQ-RELQSLLVEERLAGATLLIFANKQDLPGA--------------LSCNAIQEALELDSIRSH-HWRI 156 (186)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCCSS-CEEE
T ss_pred EECcCHHHHHHHH-HHHHHHHhChhcCCCcEEEEEeCccCCCC--------------CCHHHHHHHhChhhccCC-ceEE
Confidence 9999999999998 777776654 368999999999999754 12233322221 22 3689
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-27 Score=198.77 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=115.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+||+++|++|||||||+++|.++.+. .+.||++... ..+.. ..+.+.+|||+|+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~Dt~G~------------------ 83 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNICFTVWDVGGQ------------------ 83 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEE-EEEEE--TTEEEEEEECC--------------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeE-EEEEE--CCEEEEEEECCCC------------------
Confidence 356799999999999999999999988875 3456655221 22332 3466777777777
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 84 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 84 -------------------------------------------------------------DKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp ----------------------------------------------------------------CTTHHHHHHTCCEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHhccCCEEEE
Confidence 6666666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-----HHHHhCCee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-----LAKELKAVK 292 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~ 292 (330)
|||++++++|+.+. .|+..+.... .+.|+++|+||+|+... ...++... +++..+ ++
T Consensus 103 v~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~ 166 (192)
T 2b6h_A 103 VVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNA--------------MPVSELTDKLGLQHLRSRT-WY 166 (192)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCSSCC-EE
T ss_pred EEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCc-eE
Confidence 99999999999998 7887765532 58999999999999653 11122111 111222 57
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++++||++|.|++++|+.+++.+.+
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEECcCCCcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998864
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-26 Score=208.93 Aligned_cols=105 Identities=9% Similarity=0.111 Sum_probs=78.9
Q ss_pred cCccccCCCEEEEEEEcCChhhHhhhh--hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 207 RPLSYPQTDVFLVCFSVVSPSSFENVK--EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 207 ~~~~~~~~d~~ilv~d~~~~~s~~~~~--~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.+|++++++|+|||++++ .++... ..|+.++.+..+++|+++||||+|+..+....+ .+|++..++++++
T Consensus 66 ~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~-----~~R~V~~~~~~~l 139 (331)
T 3r7w_B 66 SERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD-----AQRDIMQRTGEEL 139 (331)
T ss_dssp HHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHH-----HHHHHHHHHHHTT
T ss_pred hhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhh-----HHHHhhHHHHHHH
Confidence 46678899999999999988 333332 033555555567999999999999976422111 1156888889999
Q ss_pred HHH----hCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 285 AKE----LKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 285 ~~~----~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++. ++ +.|+|+||++ .+|+++|..+++.++.+.
T Consensus 140 a~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 140 LELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp SSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred HhhcccccC-ceEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 986 45 7999999998 699999999999988653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-26 Score=191.29 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=118.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.+ ..+.||.+.. ...+..+ .+.+.+|||+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~------------------- 70 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQ--GFKLNVWDIGGQ------------------- 70 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEET--TEEEEEEECSSC-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEEC--CEEEEEEECCCC-------------------
Confidence 5679999999999999999999998864 3456666632 2234444 456777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 71 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 71 ------------------------------------------------------------RKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp ------------------------------------------------------------GGGHHHHHHHHTTCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 66666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
||++++++|+.+. .|+..+... ..+.|+++|+||+|+... + ..++..+.. ... .+++
T Consensus 91 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~--~~~~~~~~~~~~~~~~~-~~~~ 154 (181)
T 1fzq_A 91 IDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTA------------A--PASEIAEGLNLHTIRDR-VWQI 154 (181)
T ss_dssp EETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTC------------C--CHHHHHHHTTGGGCCSS-CEEE
T ss_pred EECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccC------------C--CHHHHHHHhCchhccCC-ceEE
Confidence 9999999999998 777776543 368999999999999754 1 222222211 112 2679
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+++++.+.++
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 155 QSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EECCTTTCTTHHHHHHHHHHTC---
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999887653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-26 Score=220.36 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=121.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|+|||||+++|.+.. +...+.+|..+.+...+..++. .+.+|||+|..+....
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~------------- 259 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKV------------- 259 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTB-------------
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCccc-------------
Confidence 5899999999999999999999765 2445555556666667777665 6789999996221110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc-cccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL-SYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~-~~~~~d~~il 219 (330)
...+|.|...+.. +++.+|++++
T Consensus 260 --------------------------------------------------------~~~~e~~~~~~~~~~~~~ad~~ll 283 (456)
T 4dcu_A 260 --------------------------------------------------------YETTEKYSVLRALKAIDRSEVVAV 283 (456)
T ss_dssp --------------------------------------------------------CCCCSHHHHHHHHHHHHHCSEEEE
T ss_pred --------------------------------------------------------chHHHHHHHHHHHHHHhhCCEEEE
Confidence 0112666665554 6788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e 295 (330)
|+|+++..+..+. .|...+.. .+.|+++|+||+|+... +.+..+++.+.++.. +..++++
T Consensus 284 viD~~~~~~~~~~--~~~~~~~~--~~~~~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 284 VLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDK------------DESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp EEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCC------------CSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred EEeCCCCcCHHHH--HHHHHHHH--cCCCEEEEEEChhcCCC------------chHHHHHHHHHHHHhcccCCCCCEEE
Confidence 9999886554433 46666655 47999999999999865 566677777777665 2368999
Q ss_pred EeeccCCCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+||++|.|++++|+.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887743
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=188.62 Aligned_cols=163 Identities=26% Similarity=0.506 Sum_probs=138.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|++++|++|+|||||++++.+..+...+.||++..+ ...+.+++..+.+.+||++|+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~------------------- 64 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ------------------- 64 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 468999999999999999999999999888889987666 447888998899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++.++++++|
T Consensus 65 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 65 ------------------------------------------------------------ERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp ------------------------------------------------------------GGTTCCCHHHHTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhhhhHHHHhcCCEEEEE
Confidence 55555566677789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+++. .|+..+.... .+.|+++|+||+|+... +.+..+++++++...+ +.++++||+
T Consensus 85 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~~d~Sal 150 (199)
T 2f9l_A 85 YDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIETSAL 150 (199)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred EECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CeEEEEeCC
Confidence 9999999999987 7888776653 57899999999999764 6678888999999987 789999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
++.|++++|+.+.+.+.+
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999888764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-26 Score=217.92 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=117.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|||||||+++++++.+ ...+..|..+.+...+..++.. +.+|||+|+.+.....
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~------------ 240 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVY------------ 240 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBC------------
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCcccc------------
Confidence 48999999999999999999999876 3455555556666667777654 7899999984322110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC-ccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP-LSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~-~~~~~~d~~il 219 (330)
.+.|.|..++. .+++.+|++++
T Consensus 241 ---------------------------------------------------------~~~e~~~~~~~~~~~~~ad~~ll 263 (436)
T 2hjg_A 241 ---------------------------------------------------------ETTEKYSVLRALKAIDRSEVVAV 263 (436)
T ss_dssp ---------------------------------------------------------CCCSHHHHHHHHHHHHHCSEEEE
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHHHHhCCEEEE
Confidence 01155555444 36788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-HHHHh---CCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-LAKEL---KAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~~~~e 295 (330)
|||++++.++++.. |+..+.. .+.|+++|+||+|+... +....++..+ +.+.+ ...++++
T Consensus 264 v~D~~~~~s~~~~~--~~~~~~~--~~~~iiiv~NK~Dl~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 264 VLDGEEGIIEQDKR--IAGYAHE--AGKAVVIVVNKWDAVDK------------DESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp EEETTTCCCHHHHH--HHHHHHH--TTCEEEEEEECGGGSCC------------CTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred EEcCCcCCcHHHHH--HHHHHHH--cCCcEEEEEECccCCCc------------chHHHHHHHHHHHHhcccCCCCCEEE
Confidence 99999999988874 7766654 47999999999999764 3333333322 22222 2368999
Q ss_pred EeeccCCCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+||++|.|++++|+.+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999998877753
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-26 Score=192.57 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=120.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++..+.+.. +.||++.. ...+..+ ...+.+|||+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~------------------- 76 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQ------------------- 76 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCS-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCC-------------------
Confidence 467899999999999999999999888753 55666532 2233333 466777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 77 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 77 ------------------------------------------------------------TGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp ------------------------------------------------------------SSSCCCCSSSSTTCCEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhhcCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-----HHHHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-----LAKELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~ 293 (330)
||++++++|+.+. .|+..+.... .+.|+++|+||+|+.... ..++... ++...+ +++
T Consensus 97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~~ 160 (189)
T 2x77_A 97 VDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLPDAA--------------SEAEIAEQLGVSSIMNRT-WTI 160 (189)
T ss_dssp EETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTSTTCC--------------CHHHHHHHTTGGGCCSSC-EEE
T ss_pred EeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCcCCC--------------CHHHHHHHhChhhccCCc-eEE
Confidence 9999999999988 6777665542 589999999999997541 1122111 112233 589
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+.+.+.+.
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=185.59 Aligned_cols=164 Identities=26% Similarity=0.468 Sum_probs=141.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+|++++|++|||||||++++.+..+...+.||++..+. ..+.+++..+.+.+||++|+
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~----------------- 88 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL----------------- 88 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSC-----------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCC-----------------
Confidence 345689999999999999999999999999899999987774 58888999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++...+..+++.+++++
T Consensus 89 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 89 --------------------------------------------------------------ERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp --------------------------------------------------------------CSSSCCCHHHHTTCCEEE
T ss_pred --------------------------------------------------------------cchhhhhHHHhhcCCEEE
Confidence 444455556677889999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||+++..+|+++. .|+..+.... .+.|+++|+||+|+... +.+..+++++++...+ +.++++|
T Consensus 107 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~ld~S 172 (191)
T 1oix_A 107 LVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNG-LSFIETS 172 (191)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999987 7888776643 57899999999999754 6677889999999987 7899999
Q ss_pred eccCCCHHHHHHHHHHHhc
Q psy9997 298 ALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~ 316 (330)
|+++.|++++|+.+.+.++
T Consensus 173 ald~~~v~~l~~~l~~~i~ 191 (191)
T 1oix_A 173 ALDSTNVEAAFQTILTEIY 191 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999988763
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=187.54 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=118.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++.++.+ ..+.||++... ..+..+ ...+.+|||+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~------------------- 72 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV-ETLSYK--NLKLNVWDLGGQ------------------- 72 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE-EEEEET--TEEEEEEEEC---------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce-EEEEEC--CEEEEEEECCCC-------------------
Confidence 4678999999999999999999998877 55667766332 334443 366777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 73 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 73 ------------------------------------------------------------TSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp --------------------------------------------------------------CCTTGGGTTTTEEEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhccCCEEEEE
Confidence 55566667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYV 294 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~ 294 (330)
||++++.+|+.+. .|+..+... ..+.|+++|+||+|+..+ ...++........ ..++++
T Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~ 157 (183)
T 1moz_A 93 VDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGA--------------LSASEVSKELNLVELKDRSWSIV 157 (183)
T ss_dssp EETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTC--------------CCHHHHHHHTTTTTCCSSCEEEE
T ss_pred EECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCceEEE
Confidence 9999999999998 788777665 368999999999999653 2233333332211 125799
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++||++|.|++++|+++.+.+.+
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 158 ASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EccCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999988754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-25 Score=187.68 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=115.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCc-eeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|+++.|...+.++....+. +.+++. .+.+.+|||+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~------------------ 64 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGH------------------ 64 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCC------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCC------------------
Confidence 45789999999999999999999999998888655433222 555544 577888888888
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccc-ccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDR-LRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~-~~~~~~~~~d~~i 218 (330)
+++.. ++..+++.+|+++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 65 -------------------------------------------------------------ESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHGGGEEEEE
T ss_pred -------------------------------------------------------------hhHHHHHHHHHHhhCCEEE
Confidence 55544 5556788999999
Q ss_pred EEEEcCChh-hHhhhhhcchhhhhhc---CCCCcEEEEEeccCCCCCchhhHH---hh-------hCCC-----------
Q psy9997 219 VCFSVVSPS-SFENVKEKWVPEITHH---CQKTPFLLVGTQIDLREDAPTLEK---LA-------KNKQ----------- 273 (330)
Q Consensus 219 lv~d~~~~~-s~~~~~~~~~~~i~~~---~~~~piilV~nK~Dl~~~~~~~~~---~~-------~~~~----------- 273 (330)
+|||+++.. ++..+.+.|...+... ..++|+++|+||+|+......... +. ....
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999854 5666663455555442 357999999999999765321100 00 0000
Q ss_pred -CCcCHHHHHHHHHHhC--CeeEEEEeeccC------CCHHHHHHHHHHHh
Q psy9997 274 -KPISFEQGEKLAKELK--AVKYVECSALTQ------KGLKNVFDEAILAA 315 (330)
Q Consensus 274 -~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~------~~v~~~f~~l~~~i 315 (330)
+.+..++++.|+.... .++|+|+||++| .||+++|+++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 1122222223333221 478999999999 99999999998753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=179.00 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=112.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec-ceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|..+|++++|++|+|||||+++|.+..+...+.|+.... ....+..++ ..+.+|||+|++++....
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~----------- 67 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANS----------- 67 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSS-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcc-----------
Confidence 457899999999999999999999987655555554333 233455554 578899999985432110
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc--CCCEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP--QTDVF 217 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~--~~d~~ 217 (330)
....+...+++ ++|++
T Consensus 68 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 85 (165)
T 2wji_A 68 --------------------------------------------------------------IDEIIARDYIINEKPDLV 85 (165)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHCCSEE
T ss_pred --------------------------------------------------------------hhHHHHHHHHhcCCCCEE
Confidence 00112233343 78999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|+|+++.+. .. .|+.++.+ .+.|+++|+||+|+... +.+.. +++++++.++ ++++++|
T Consensus 86 i~v~D~~~~~~---~~-~~~~~~~~--~~~p~ilv~nK~Dl~~~------------~~~~~-~~~~~~~~~~-~~~~~~S 145 (165)
T 2wji_A 86 VNIVDATALER---NL-YLTLQLME--MGANLLLALNKMDLAKS------------LGIEI-DVDKLEKILG-VKVVPLS 145 (165)
T ss_dssp EEEEETTCHHH---HH-HHHHHHHH--TTCCEEEEEECHHHHHH------------TTCCC-CHHHHHHHHT-SCEEECB
T ss_pred EEEecCCchhH---hH-HHHHHHHh--cCCCEEEEEEchHhccc------------cChhh-HHHHHHHHhC-CCEEEEE
Confidence 99999998654 33 46666655 37999999999998643 33332 4677888887 6999999
Q ss_pred eccCCCHHHHHHHHHHHh
Q psy9997 298 ALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i 315 (330)
|++|.|++++|+.+.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998876
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=168.94 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=68.7
Q ss_pred cccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~ 277 (330)
+++...+..++..+|++++|||+++ +.+++.+. .+.. .+.|+++|+||+|+....
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~-----~~~~--~~~p~ilv~nK~Dl~~~~--------------- 123 (178)
T 2lkc_A 66 EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAIN-----HAKA--ANVPIIVAINKMDKPEAN--------------- 123 (178)
T ss_dssp SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHH-----HHGG--GSCCEEEEEETTTSSCSC---------------
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-----HHHh--CCCCEEEEEECccCCcCC---------------
Confidence 5555666677788999999999988 44444433 2222 478999999999997531
Q ss_pred HHHHHHHHHHhC--------CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 278 FEQGEKLAKELK--------AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 278 ~~~~~~~~~~~~--------~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.++.....+..+ .++++++||++|.|++++|+.+++.+...+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 124 PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 122222222211 25899999999999999999999888665443
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=195.30 Aligned_cols=168 Identities=15% Similarity=0.242 Sum_probs=130.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+||+++|++|||||||++++.++. +. ..+.+|++..+.. +.+++ .+.+.+|||+|++++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~-~~~~~-~~~l~i~Dt~G~~~~~------------- 66 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH-LRFLG-NMTLNLWDCGGQDVFM------------- 66 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE-EEETT-TEEEEEEEECCSHHHH-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE-EEeCC-ceEEEEEECCCcHHHh-------------
Confidence 36899999999999999999998873 32 2566777666653 34444 6788899999983321
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc-cccccCccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED-YDRLRPLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~-~~~~~~~~~~~~d~~ 217 (330)
+. +..++..+++++|++
T Consensus 67 --------------------------------------------------------------~~~~~~~~~~~~~~ad~v 84 (307)
T 3r7w_A 67 --------------------------------------------------------------ENYFTKQKDHIFQMVQVL 84 (307)
T ss_dssp --------------------------------------------------------------HHHHTTTHHHHHTTCSEE
T ss_pred --------------------------------------------------------------hhhhhhHHHHHhccCCEE
Confidence 11 156677788899999
Q ss_pred EEEEEcCChhhHhhhhhcc---hhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCC----cCHHHHHHHHHHhCC
Q psy9997 218 LVCFSVVSPSSFENVKEKW---VPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKP----ISFEQGEKLAKELKA 290 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~---~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~ 290 (330)
++|||++++++|+++. .| +..+....+++|+++||||+|+..+.. +. +..++++++++.+|.
T Consensus 85 i~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~----------r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 85 IHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDK----------REELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp EEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH----------HHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhh----------hhHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999987 56 444555567899999999999976311 33 677889999999973
Q ss_pred --eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 291 --VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 --~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|+++||++ .++.++|..++..++..
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence 7999999999 89999999999887754
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-25 Score=202.46 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=114.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+...+ ||++..+. .++...+.+.+|||+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~---~~~~~~~~l~i~Dt~G~------------------- 219 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQ------------------- 219 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE---EEEETTEEEEEEECC---------------------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE---EEecCcEEEEEEECCCC-------------------
Confidence 45689999999999999999999998875443 45543332 23334456677777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 220 ------------------------------------------------------------~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 220 ------------------------------------------------------------DKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp ---------------------------------------------------------------CCSHHHHHTTEEEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhccCCEEEEE
Confidence 66777777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
||++++.+|..+. .|+..+.... .++|+++|+||+|+.... ..++..... ... .++|
T Consensus 240 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~-~~~~ 303 (329)
T 3o47_A 240 VDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRHR-NWYI 303 (329)
T ss_dssp EETTCSSSHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHHTCTTCCSS-CEEE
T ss_pred EECCchHHHHHHH-HHHHHHHhhhccCCCeEEEEEECccCCccc--------------CHHHHHHHhchhhhhcC-CCEE
Confidence 9999999999998 5555544332 589999999999997541 122221111 112 2679
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.||+++|+.+++.+.+.
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-25 Score=183.45 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=131.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|.+..+...+.|+..... ..+..+ .+.+|||+|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~--------------------- 55 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFG--------------------- 55 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBS---------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCcc---------------------
Confidence 6899999999999999999999998877777553222 233333 68899999971
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC-CCEEEEEEE
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ-TDVFLVCFS 222 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~-~d~~ilv~d 222 (330)
....||+.+++.+......+++. ++++++||+
T Consensus 56 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 88 (190)
T 2cxx_A 56 -----------------------------------------------FMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVL 88 (190)
T ss_dssp -----------------------------------------------CCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEE
T ss_pred -----------------------------------------------ccccCCHHHHHHHHHHHHHHHHhhhccCCEEEE
Confidence 12346777778888888888887 999999999
Q ss_pred cCChhhHhhhhhcchhh--------hhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe-
Q psy9997 223 VVSPSSFENVKEKWVPE--------ITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV- 291 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~--------i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 291 (330)
+.+..+|+++.+.|... +... ..+.|+++|+||+|+... + .+++..+++.++..
T Consensus 89 v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~---~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 89 VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN------------V---QEVINFLAEKFEVPL 153 (190)
T ss_dssp EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC------------H---HHHHHHHHHHHTCCG
T ss_pred EEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc------------H---HHHHHHHHHHhhhhh
Confidence 99999999874467653 2221 258999999999999764 2 56788888888741
Q ss_pred -----eEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 292 -----KYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 292 -----~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+++++||++|.|++++|+.+++.+.+.++
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 47999999999999999999999876544
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=193.23 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=108.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+|++++|++|||||||++++.+..+ ...+..|..+.....+.+++. .+.+|||+|++++......
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~----------- 247 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPR----------- 247 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC--------------------
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchh-----------
Confidence 7999999999999999999998865 344545555555567777776 4678999998443221100
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~ilv 220 (330)
+.+.|...+ ..+++.+|+++++
T Consensus 248 ---------------------------------------------------------~~e~~~~~~~~~~i~~ad~vllv 270 (439)
T 1mky_A 248 ---------------------------------------------------------TVEKYSNYRVVDSIEKADVVVIV 270 (439)
T ss_dssp -----------------------------------------------------------CCSCCHHHHHHHHHCSEEEEE
T ss_pred ---------------------------------------------------------hHHHHHHHHHHHHHhhCCEEEEE
Confidence 002222222 1346779999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-HHHHHh---CCeeEEEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-KLAKEL---KAVKYVEC 296 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~~~e~ 296 (330)
+|+++..++++.. +...+.. .+.|+++|+||+|+... +....++.. .+.+.+ +..+++++
T Consensus 271 ~d~~~~~~~~~~~--i~~~l~~--~~~~~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 271 LDATQGITRQDQR--MAGLMER--RGRASVVVFNKWDLVVH------------REKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp EETTTCCCHHHHH--HHHHHHH--TTCEEEEEEECGGGSTT------------GGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred EeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECccCCCc------------hhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 9999877766532 3333333 47899999999999754 333333332 222222 23689999
Q ss_pred eeccCCCHHHHHHHHHHHhc
Q psy9997 297 SALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~ 316 (330)
||++|.|++++|+.+.+.+.
T Consensus 335 SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887664
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-23 Score=203.74 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=119.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEE---------ECCceeeeeeeecCCCccccccCCC
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM---------IGGEPYTLGLFDTAGQEDYDRLRPL 130 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~---------~~~~~~~l~i~Dt~g~~~~~~l~~~ 130 (330)
.+..+||+++|++|||||||++++.++.|...+.||++..+..... .++..+.+.+|||+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G---------- 107 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG---------- 107 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCc----------
Confidence 4567999999999999999999999999988888988777654321 122234455555555
Q ss_pred CCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc
Q psy9997 131 SYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS 210 (330)
Q Consensus 131 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~ 210 (330)
++.+...+..+
T Consensus 108 ---------------------------------------------------------------------~e~~~~~~~~~ 118 (535)
T 3dpu_A 108 ---------------------------------------------------------------------QEIMHASHQFF 118 (535)
T ss_dssp ---------------------------------------------------------------------CCTTTTTCHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 47777777778
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
++.+|++++|||+++. +.+. .|+.++....++.|+++|+||+|+... +.+..+++++++...+
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~- 181 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKH-YWLRHIEKYGGKSPVIVVMNKIDENPS------------YNIEQKKINERFPAIE- 181 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHH-HHHHHHHHHSSSCCEEEEECCTTTCTT------------CCCCHHHHHHHCGGGT-
T ss_pred ccCCcEEEEEEeCCCc---hhHH-HHHHHHHHhCCCCCEEEEEECCCcccc------------cccCHHHHHHHHHhcC-
Confidence 8899999999998764 5555 799999888888999999999999765 6778888999988887
Q ss_pred eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 291 VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+++++||++|.|++++|+.+.+.+.+.+.
T Consensus 182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 182 NRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred CceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 689999999999999999999999887644
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-23 Score=174.10 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=119.0
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
+.|+.+||+++|++|||||||+++|.+..+...+.|+..... ...+..++ ..+.+|||+|++.+....
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~--------- 71 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANS--------- 71 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSS---------
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCcccccc---------
Confidence 457789999999999999999999998765444445443322 33455543 678899999985432110
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTD 215 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d 215 (330)
....++..++ ..++
T Consensus 72 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 87 (188)
T 2wjg_A 72 ----------------------------------------------------------------IDEIIARDYIINEKPD 87 (188)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHCCS
T ss_pred ----------------------------------------------------------------HHHHHHHHHHhccCCC
Confidence 0011222333 3589
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++++|+|.++ ++... .|+..+.. .+.|+++|+||+|+... +.+. ++++.+++.++ +++++
T Consensus 88 ~~i~v~d~~~---~~~~~-~~~~~~~~--~~~piilv~nK~Dl~~~------------~~~~-~~~~~~~~~~~-~~~~~ 147 (188)
T 2wjg_A 88 LVVNIVDATA---LERNL-YLTLQLME--MGANLLLALNKMDLAKS------------LGIE-IDVDKLEKILG-VKVVP 147 (188)
T ss_dssp EEEEEEEGGG---HHHHH-HHHHHHHT--TTCCEEEEEECHHHHHH------------TTCC-CCHHHHHHHHT-SCEEE
T ss_pred EEEEEecchh---HHHHH-HHHHHHHh--cCCCEEEEEEhhhcccc------------ccch-HHHHHHHHHhC-CCeEE
Confidence 9999999986 44554 57766655 47899999999999643 3333 45678888887 69999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+||++|.|++++|+.+++.+.+..
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EEecCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999987665
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=174.82 Aligned_cols=170 Identities=13% Similarity=0.098 Sum_probs=115.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCc-eeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT-VFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|++..+.....+. ........... ....+.+|||+|+......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~------------ 92 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFE------------ 92 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGG------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccc------------
Confidence 56799999999999999999999998764222111 11111112222 2367888999998221000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc----cccccCccccCCC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED----YDRLRPLSYPQTD 215 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~----~~~~~~~~~~~~d 215 (330)
++ +..+. .++..+|
T Consensus 93 -------------------------------------------------------------~~~~~~~~~~~-~~~~~~d 110 (228)
T 2qu8_A 93 -------------------------------------------------------------NRNTIEMTTIT-ALAHING 110 (228)
T ss_dssp -------------------------------------------------------------GCCHHHHHHHH-HHHTSSE
T ss_pred -------------------------------------------------------------hhhhHHHHHHH-Hhhcccc
Confidence 11 22222 2366789
Q ss_pred EEEEEEEcCChhhHhhhh-hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH---HHHHHHHHhC-C
Q psy9997 216 VFLVCFSVVSPSSFENVK-EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE---QGEKLAKELK-A 290 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~-~ 290 (330)
++++|||++++.+|.... ..|+..+.....+.|+++|+||+|+... +.+..+ ++..+++..+ .
T Consensus 111 ~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 111 VILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM------------DSLSIDNKLLIKQILDNVKNP 178 (228)
T ss_dssp EEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHHHHHCCSC
T ss_pred EEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc------------hhhHHHHHHHHHHHHHhcCCC
Confidence 999999999998886321 1567777666568999999999999764 445543 4566666653 2
Q ss_pred eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 291 VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++++||++|.|++++|+.+++.+.+.
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-23 Score=171.48 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=112.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+..+ ...+.++..+.+...+.+++. .+.+|||+|++.+....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~----------- 69 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEV----------- 69 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHH-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHH-----------
Confidence 457999999999999999999998764 344444444445567777764 47899999984321000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~i 218 (330)
+.+. .....+++.+|+++
T Consensus 70 -------------------------------------------------------------~~~~~~~~~~~~~~ad~~i 88 (172)
T 2gj8_A 70 -------------------------------------------------------------ERIGIERAWQEIEQADRVL 88 (172)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHTCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhCCEEE
Confidence 1000 00112467899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+++.. .|+..+.+.. .++|+++|+||+|+..+. .. +++..+ .+++++|
T Consensus 89 ~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-----------~~--------~~~~~~-~~~~~~S 146 (172)
T 2gj8_A 89 FMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGET-----------LG--------MSEVNG-HALIRLS 146 (172)
T ss_dssp EEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCC-----------CE--------EEEETT-EEEEECC
T ss_pred EEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcch-----------hh--------hhhccC-CceEEEe
Confidence 99999999998754 5777776654 479999999999995431 00 111233 6899999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.+.+.+-.
T Consensus 147 A~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999887643
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-22 Score=171.27 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=105.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.|...+.++.+..... ....++ .+.+|||+|......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~------------- 84 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKV------------- 84 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSS-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCcccc-------------
Confidence 346899999999999999999999998777776766655433 333333 578888888411000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCC---CE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT---DV 216 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~---d~ 216 (330)
+...++.+..+...+++.+ |+
T Consensus 85 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1svi_A 85 --------------------------------------------------------SKSEREAWGRMIETYITTREELKA 108 (195)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred --------------------------------------------------------CHHHHHHHHHHHHHHHhhhhcCCE
Confidence 0000244555555566555 99
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC--HHHHHH-HHHHhCCeeE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS--FEQGEK-LAKELKAVKY 293 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~--~~~~~~-~~~~~~~~~~ 293 (330)
+++|+|++++.++.+.. ++..+.. .+.|+++|+||+|+... +.+. .+++.+ ++... ..++
T Consensus 109 ~i~v~d~~~~~~~~~~~--~~~~~~~--~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 171 (195)
T 1svi_A 109 VVQIVDLRHAPSNDDVQ--MYEFLKY--YGIPVIVIATKADKIPK------------GKWDKHAKVVRQTLNIDP-EDEL 171 (195)
T ss_dssp EEEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCG------------GGHHHHHHHHHHHHTCCT-TSEE
T ss_pred EEEEEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCCh------------HHHHHHHHHHHHHHcccC-CCce
Confidence 99999999988887753 3333333 57899999999999764 2222 123333 22222 3689
Q ss_pred EEEeeccCCCHHHHHHHHHHHhc
Q psy9997 294 VECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+++||++|.|++++|+.+.+.+-
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999988763
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=166.12 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=105.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.||+++|++|+|||||++++.+..+. ..+.++..+.+...+..++. .+.+|||+|++.+..+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~------------- 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWE------------- 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCC-------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchH-------------
Confidence 58999999999999999999988753 33333333334445555554 67899999984322100
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
..+......+++.+|++++||
T Consensus 67 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 87 (161)
T 2dyk_A 67 -----------------------------------------------------------KKIQEKVDRALEDAEVVLFAV 87 (161)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHTTTCSEEEEEE
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHhCCEEEEEE
Confidence 223344455678899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++++.+.... .+...+.. .+.|+++|+||+|+.... +++.+++ .++..+++++||++|
T Consensus 88 d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 88 DGRAELTQADY--EVAEYLRR--KGKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp ESSSCCCHHHH--HHHHHHHH--HTCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSCEECBTTTT
T ss_pred ECCCcccHhHH--HHHHHHHh--cCCCEEEEEECcccccch----------------HhHHHHH-hCCCCCeEEEecccC
Confidence 99986554332 22333333 478999999999997531 2233444 556347999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++|+.+++.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 99999999998764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-22 Score=169.55 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=117.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.+.. ...+.++.+.......... ...+.+|||+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~--~~~~~i~Dt~G~~~----------------- 80 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLV--NSKYYFVDLPGYGY----------------- 80 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEE--TTTEEEEECCCBSS-----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEE--CCcEEEEECCCCcc-----------------
Confidence 346899999999999999999999987 3444555554443322221 23467889888510
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCC---CEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT---DVF 217 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~---d~~ 217 (330)
..|+..+++.+..+...+++.+ |++
T Consensus 81 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 108 (195)
T 3pqc_A 81 ----------------------------------------------------AKVSKKERMLWKRLVEDYFKNRWSLQMV 108 (195)
T ss_dssp ----------------------------------------------------SCCCHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ----------------------------------------------------ccCChhhHHHHHHHHHHHHhcCcCceEE
Confidence 1122333455666666666555 899
Q ss_pred EEEEEcCChhhHhhhh-hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVK-EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|+|.++..+..... ..|+... +.|+++|+||+|+..+.. +....++++.++...+.++++++
T Consensus 109 i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 3pqc_A 109 FLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSE----------RAKKLEEHRKVFSKYGEYTIIPT 173 (195)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGG----------HHHHHHHHHHHHHSSCCSCEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHH----------HHHHHHHHHHHHhhcCCCceEEE
Confidence 9999998764443332 0333332 789999999999975421 34556677788887666799999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+.+.+.+
T Consensus 174 Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 174 SSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHC-
T ss_pred ecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999988754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-21 Score=173.34 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=111.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||+++|++..+.....| |..+ .....++. ...+.+|||||++.+....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~------------- 66 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS------------- 66 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCC-------------
Confidence 57999999999999999999998764333223 2222 22333444 6678889998884432110
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc--CCCEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP--QTDVFLV 219 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~--~~d~~il 219 (330)
....+...++. ++|++++
T Consensus 67 ------------------------------------------------------------~~e~v~~~~~~~~~~d~vi~ 86 (272)
T 3b1v_A 67 ------------------------------------------------------------PEAKVARDYLLSQRADSILN 86 (272)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTCCSEEEE
T ss_pred ------------------------------------------------------------hHHHHHHHHHhcCCCCEEEE
Confidence 00012233333 6999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||+++.+++. .|..++.+ .+.|+++|+||+|+... +.+. .++..+++.++ ++++++||+
T Consensus 87 V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~vi~~SA~ 146 (272)
T 3b1v_A 87 VVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDG------------QGKK-INVDKLSYHLG-VPVVATSAL 146 (272)
T ss_dssp EEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHH------------TTCC-CCHHHHHHHHT-SCEEECBTT
T ss_pred EecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCc------------CCcH-HHHHHHHHHcC-CCEEEEEcc
Confidence 99999876553 35455544 47999999999999643 3333 35678888888 799999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+.+.+-.
T Consensus 147 ~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTBSHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999887643
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-21 Score=170.29 Aligned_cols=162 Identities=21% Similarity=0.221 Sum_probs=113.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||+++|++..+.....|.+.... ....+......+.+|||||++.+.+.+.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------- 70 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEK-KEGVFTYKGYTINLIDLPGTYSLGYSSI----------- 70 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEE-EEEEEEETTEEEEEEECCCCSSCCSSSH-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEE-EEEEEEECCeEEEEEECCCcCccCCCCH-----------
Confidence 5678999999999999999999998876433333222111 1222223346788999999844332110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVFL 218 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~i 218 (330)
+ ..+...++ ..+|+++
T Consensus 71 ------------------------------------------------------------~--e~v~~~~~~~~~~d~ii 88 (258)
T 3a1s_A 71 ------------------------------------------------------------D--EKIARDYLLKGDADLVI 88 (258)
T ss_dssp ------------------------------------------------------------H--HHHHHHHHHHSCCSEEE
T ss_pred ------------------------------------------------------------H--HHHHHHHHhhcCCCEEE
Confidence 0 01112233 5799999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|+|.++.++... |...+... +.|+++|+||+|+... +.+. .++..+++.++ ++++++||
T Consensus 89 ~V~D~t~~~~~~~----~~~~l~~~--~~pvilv~NK~Dl~~~------------~~i~-~~~~~l~~~lg-~~vi~~SA 148 (258)
T 3a1s_A 89 LVADSVNPEQSLY----LLLEILEM--EKKVILAMTAIDEAKK------------TGMK-IDRYELQKHLG-IPVVFTSS 148 (258)
T ss_dssp EEEETTSCHHHHH----HHHHHHTT--TCCEEEEEECHHHHHH------------TTCC-BCHHHHHHHHC-SCEEECCT
T ss_pred EEeCCCchhhHHH----HHHHHHhc--CCCEEEEEECcCCCCc------------cchH-HHHHHHHHHcC-CCEEEEEe
Confidence 9999998765433 44455443 7999999999999653 3333 24678888888 79999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999998775
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=170.81 Aligned_cols=175 Identities=18% Similarity=0.125 Sum_probs=126.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
.+...-.|+++|.+|+|||||+++|++.++.. ....|........... +....+.+|||||+..+...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~--------- 75 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKS--------- 75 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTT---------
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccc---------
Confidence 34556789999999999999999999988743 2222222222222222 22567889999998321100
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
+.. .+.+......+++.+|+
T Consensus 76 -----------------------------------------------------------~~l-~~~~~~~~~~~l~~aD~ 95 (308)
T 3iev_A 76 -----------------------------------------------------------DVL-GHSMVEIAKQSLEEADV 95 (308)
T ss_dssp -----------------------------------------------------------CHH-HHHHHHHHHHHHHHCSE
T ss_pred -----------------------------------------------------------hhH-HHHHHHHHHHHhhcCCE
Confidence 000 03344455667889999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVE 295 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e 295 (330)
+++|+|++++.++.+.. .|+..+.. .+.|+++|+||+|+... +....+....+.+.++ ..++++
T Consensus 96 il~VvD~~~~~~~~~~~-~~~~~l~~--~~~pvilV~NK~Dl~~~------------~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 96 ILFMIDATEGWRPRDEE-IYQNFIKP--LNKPVIVVINKIDKIGP------------AKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp EEEEEETTTBSCHHHHH-HHHHHTGG--GCCCEEEEEECGGGSSS------------GGGGHHHHHHHHHHCTTCCCEEE
T ss_pred EEEEEeCCCCCCchhHH-HHHHHHHh--cCCCEEEEEECccCCCC------------HHHHHHHHHHHHHhccCCCeEEE
Confidence 99999999999998887 67877776 37999999999999743 4456677778888773 467999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+||++|.|++++|+.+...+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EeCCCCCCHHHHHHHHHHhCccC
Confidence 99999999999999999988654
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=171.10 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=91.2
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCC----------hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~ 261 (330)
+||++||++++..+..++++++++|+|||+++ ..++++.. .|+..+... ..++|+||||||+|+..+
T Consensus 197 iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~DL~~~ 275 (353)
T 1cip_A 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKKDLFEE 275 (353)
T ss_dssp EEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECcCchhh
Confidence 34444447777777788888888888888887 56788887 787777653 468999999999999643
Q ss_pred chh---hHHhhhCCCCCcCHHHHHHHHHH----------hCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 262 APT---LEKLAKNKQKPISFEQGEKLAKE----------LKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 262 ~~~---~~~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
... ....-++....++.+++..++.. ...+.+++|||++|.||+++|.++.+.+++.
T Consensus 276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 110 11111223345788999999873 2347899999999999999999999988753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-21 Score=168.50 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=100.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC---CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+||+++|++|+|||||+++|.+..+.. .+.|+++..+ ....+.+|||+|+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~---------------- 65 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGH---------------- 65 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCC----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCc----------------
Confidence 456899999999999999999999988654 3455554433 4456667777776
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC----
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---- 213 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---- 213 (330)
+.+...+..+++.
T Consensus 66 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 66 ---------------------------------------------------------------VKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp ---------------------------------------------------------------GGGTHHHHHHHHHHGGG
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHhcccc
Confidence 4444444445554
Q ss_pred CCEEEEEEEcC-ChhhHhhhhhcchhhhhhc-----CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 214 TDVFLVCFSVV-SPSSFENVKEKWVPEITHH-----CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 214 ~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+|++++|||++ ++.+|..+. .|+.++... ..++|+++|+||+|+...... ++. .....+++..++..
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~-----~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTARPP-SKI-----KDALESEIQKVIER 155 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH-HHH-----HHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcccCCH-HHH-----HHHHHHHHHHHHHH
Confidence 89999999999 999999998 777776553 258999999999999765110 000 11125667788877
Q ss_pred hCCeeEEEEeeccCCC
Q psy9997 288 LKAVKYVECSALTQKG 303 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~ 303 (330)
.+ ..|+++||++|.+
T Consensus 156 ~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RK-KSLNEVERKINEE 170 (218)
T ss_dssp HH-HHHHC--------
T ss_pred Hh-ccccccccccccc
Confidence 76 6899999998875
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-20 Score=167.91 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=77.9
Q ss_pred cccccccCccccCCCEEEEEEE----------cCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchh---h
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFS----------VVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPT---L 265 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d----------~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~---~ 265 (330)
++++.++..+|++++++|+||| .++..+|++.. .|+..+... ..++|++|+|||+|+..+... .
T Consensus 178 e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l 256 (327)
T 3ohm_A 178 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL 256 (327)
T ss_dssp HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCG
T ss_pred hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECchhhhhhhccchH
Confidence 4444444444444444444443 34677788777 677776543 368999999999999753211 1
Q ss_pred HHhhhCCCC-CcCHHHHHHHHH----------HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 266 EKLAKNKQK-PISFEQGEKLAK----------ELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 266 ~~~~~~~~~-~v~~~~~~~~~~----------~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
...-++... .++.+++.+|+. ..+ +.++++||+++.||+++|..+.+.+++..
T Consensus 257 ~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 257 VDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp GGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 111122222 578899999854 333 78899999999999999999999998643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-21 Score=163.97 Aligned_cols=178 Identities=12% Similarity=0.027 Sum_probs=109.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|++..+.....++.+.... ....+. .....+.+|||+|.......
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----------- 95 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVP----------- 95 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCC-----------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCC-----------
Confidence 45689999999999999999999988732222222222222 233333 44567889999986210000
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC---CC
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---TD 215 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---~d 215 (330)
..-++.+......+++. +|
T Consensus 96 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~d 117 (223)
T 4dhe_A 96 ----------------------------------------------------------GAAKAHWEQLLSSYLQTRPQLC 117 (223)
T ss_dssp ----------------------------------------------------------STHHHHHHHHHHHHHHHCTTEE
T ss_pred ----------------------------------------------------------hhhHHHHHHHHHHHHhcCcCcC
Confidence 00013333333334433 78
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh------C
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL------K 289 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~ 289 (330)
++++|+|.+++.+.... .|+..+.. .+.|+++|+||+|+...... ....++..+....+ .
T Consensus 118 ~vi~v~d~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~l~~~~~~~~~~ 183 (223)
T 4dhe_A 118 GMILMMDARRPLTELDR--RMIEWFAP--TGKPIHSLLTKCDKLTRQES----------INALRATQKSLDAYRDAGYAG 183 (223)
T ss_dssp EEEEEEETTSCCCHHHH--HHHHHHGG--GCCCEEEEEECGGGSCHHHH----------HHHHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEEeCCCCCCHHHH--HHHHHHHh--cCCCEEEEEeccccCChhhH----------HHHHHHHHHHHHhhhhcccCC
Confidence 89999999876443332 35555554 47899999999999764210 00112223333332 4
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
..+++++||++|.|++++|+.+.+.+.....+
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence 47899999999999999999999988665443
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-21 Score=169.20 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=110.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.||+++|++|||||||+++|++..+.....|++. +.....+..++. .+.+|||||+..+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~------------ 67 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEG------------ 67 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-----------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccC------------
Confidence 3799999999999999999998875443334443 223335555554 7889999998443211000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVFLVC 220 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~ilv 220 (330)
. .....+...++ .++|++++|
T Consensus 68 -------~--------------------------------------------------~~~e~i~~~~~~~~~~d~vi~V 90 (256)
T 3iby_A 68 -------I--------------------------------------------------SQDEQIAAQSVIDLEYDCIINV 90 (256)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHSCCSEEEEE
T ss_pred -------C--------------------------------------------------CHHHHHHHHHHhhCCCCEEEEE
Confidence 0 00011233344 789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+|+++.+++..+. .++.++ +.|+++|+||+|+... +.+. .....+++.++ ++++++||++
T Consensus 91 vDas~~~~~~~l~-~~l~~~-----~~pvilv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~vi~~SA~~ 150 (256)
T 3iby_A 91 IDACHLERHLYLT-SQLFEL-----GKPVVVALNMMDIAEH------------RGIS-IDTEKLESLLG-CSVIPIQAHK 150 (256)
T ss_dssp EEGGGHHHHHHHH-HHHTTS-----CSCEEEEEECHHHHHH------------TTCE-ECHHHHHHHHC-SCEEECBGGG
T ss_pred eeCCCchhHHHHH-HHHHHc-----CCCEEEEEEChhcCCc------------CCcH-HHHHHHHHHcC-CCEEEEECCC
Confidence 9999987777665 343332 7899999999999653 2221 12455778887 7999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
|.|++++|+.+.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-21 Score=171.61 Aligned_cols=167 Identities=11% Similarity=0.090 Sum_probs=113.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|++++|+++|++|+|||||+++|++..+.....|++. +.....+...+ ..+.+|||||++.+..+...+
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~-------- 70 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQT-------- 70 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----C--------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccC--------
Confidence 5679999999999999999999998876444344332 22233444444 456789999985544221100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc--ccCCCEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS--YPQTDVF 217 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~--~~~~d~~ 217 (330)
.....+...+ .+.+|++
T Consensus 71 -------------------------------------------------------------~~~e~i~~~~~~~~~~d~i 89 (274)
T 3i8s_A 71 -------------------------------------------------------------SLDEQIACHYILSGDADLL 89 (274)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHTCCSEE
T ss_pred -------------------------------------------------------------CHHHHHHHHHHhhcCCCEE
Confidence 0000111122 3689999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|+|.++.+.+..+. .++ .+. +.|+++|+||+|+... +.+. .+...+++.++ ++++++|
T Consensus 90 i~VvD~~~~~~~~~~~-~~l---~~~--~~p~ivv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~~i~~S 149 (274)
T 3i8s_A 90 INVVDASNLERNLYLT-LQL---LEL--GIPCIVALNMLDIAEK------------QNIR-IEIDALSARLG-CPVIPLV 149 (274)
T ss_dssp EEEEEGGGHHHHHHHH-HHH---HHH--TCCEEEEEECHHHHHH------------TTEE-ECHHHHHHHHT-SCEEECC
T ss_pred EEEecCCChHHHHHHH-HHH---Hhc--CCCEEEEEECccchhh------------hhHH-HHHHHHHHhcC-CCEEEEE
Confidence 9999999977665554 333 332 7999999999999643 2221 23466788887 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+.+.+.+.+.
T Consensus 150 A~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999988776544
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=164.66 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=84.3
Q ss_pred cccccccccccCccccCCCEEEEEEEcC----------ChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchh
Q psy9997 197 TAGQEDYDRLRPLSYPQTDVFLVCFSVV----------SPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 197 ~~g~e~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~ 264 (330)
++||++++.++..+|++++++|+|||++ +..+|++.. .|+..+... ..++|++|||||+|+..+...
T Consensus 168 taGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~-~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~ 246 (340)
T 4fid_A 168 VGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI-AVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLT 246 (340)
T ss_dssp CCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH-HHHHHHHHCGGGTTSEEEEEEECHHHHHHHHH
T ss_pred CCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHH-HHHHHHhhhhccCCCeEEEEEECchhhhhhcC
Confidence 3333666666666666777777777776 778888887 677766553 368999999999999753221
Q ss_pred hHH---hhhCCCCCcCHHHHHHHHHH-h-------------------------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 265 LEK---LAKNKQKPISFEQGEKLAKE-L-------------------------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 265 ~~~---~~~~~~~~v~~~~~~~~~~~-~-------------------------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
... .-++.....+.+++.+|+.. + ..+.++++||+++.||+.+|..+.+.|
T Consensus 247 ~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 247 KVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp HSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHH
Confidence 111 11233334578888777653 2 237789999999999999999999988
Q ss_pred cC
Q psy9997 316 LE 317 (330)
Q Consensus 316 ~~ 317 (330)
++
T Consensus 327 l~ 328 (340)
T 4fid_A 327 MK 328 (340)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-20 Score=166.12 Aligned_cols=167 Identities=17% Similarity=0.131 Sum_probs=112.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.+..+|+++|++|+|||||+++|++.++.. ....|......... ......+.+|||||+.......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~--~~~~~~l~l~DTpG~~~~~~~l---------- 72 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL--TEGRRQIVFVDTPGLHKPMDAL---------- 72 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE--EETTEEEEEEECCCCCCCCSHH----------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE--EeCCcEEEEecCccccchhhHH----------
Confidence 456789999999999999999999988742 22233332222222 2345678899999983211000
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
.+.+......+++.+|+++
T Consensus 73 -------------------------------------------------------------~~~~~~~~~~~l~~ad~il 91 (301)
T 1wf3_A 73 -------------------------------------------------------------GEFMDQEVYEALADVNAVV 91 (301)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHTSSCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhcCCEEE
Confidence 0223444556788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.+..+. .++..+.....+.|+++|+||+|+... +....+.++.+ .+..+++++||
T Consensus 92 ~VvD~~~~~~~~~~--~i~~~l~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~---~~~~~~~~iSA 154 (301)
T 1wf3_A 92 WVVDLRHPPTPEDE--LVARALKPLVGKVPILLVGNKLDAAKY------------PEEAMKAYHEL---LPEAEPRMLSA 154 (301)
T ss_dssp EEEETTSCCCHHHH--HHHHHHGGGTTTSCEEEEEECGGGCSS------------HHHHHHHHHHT---STTSEEEECCT
T ss_pred EEEECCCCCChHHH--HHHHHHHhhcCCCCEEEEEECcccCCc------------hHHHHHHHHHh---cCcCcEEEEeC
Confidence 99999987555432 234556655468999999999999754 11011222222 23357999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+...+.+
T Consensus 155 ~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 155 LDERQVAELKADLLALMPE 173 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHhccc
Confidence 9999999999999887643
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-20 Score=165.73 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=113.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|+.+||+++|++|+|||||+++|++..+.....|++.... ...+..++. .+.+|||||+..+.....
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~---------- 68 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSI---------- 68 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCH----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCH----------
Confidence 4678999999999999999999999876444445443333 234455543 488899999843221100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVF 217 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~ 217 (330)
+ ......++ .++|++
T Consensus 69 -------------------------------------------------------------~--~~~~~~~~~~~~~d~v 85 (271)
T 3k53_A 69 -------------------------------------------------------------D--ELIARNFILDGNADVI 85 (271)
T ss_dssp -------------------------------------------------------------H--HHHHHHHHHTTCCSEE
T ss_pred -------------------------------------------------------------H--HHHHHHhhhccCCcEE
Confidence 0 01222233 679999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|+|.++.+.. + .|...+... ...|+++|+||+|+... +.+.. +...+++.++ ++++++|
T Consensus 86 i~v~D~~~~~~~--~--~~~~~~~~~-~~~p~ilv~NK~Dl~~~------------~~~~~-~~~~l~~~lg-~~~~~~S 146 (271)
T 3k53_A 86 VDIVDSTCLMRN--L--FLTLELFEM-EVKNIILVLNKFDLLKK------------KGAKI-DIKKMRKELG-VPVIPTN 146 (271)
T ss_dssp EEEEEGGGHHHH--H--HHHHHHHHT-TCCSEEEEEECHHHHHH------------HTCCC-CHHHHHHHHS-SCEEECB
T ss_pred EEEecCCcchhh--H--HHHHHHHhc-CCCCEEEEEEChhcCcc------------cccHH-HHHHHHHHcC-CcEEEEE
Confidence 999999986432 2 244444433 23999999999998643 22222 2667888888 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+.+...+-+.
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTC
T ss_pred eCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999887654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=172.85 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=99.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+.. +...+.+|..+.+...+.+++ ..+.+|||+|++.+....
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~v----------- 298 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEI----------- 298 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHH-----------
Confidence 35899999999999999999999875 344555555555556677766 468899999984432211
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccc-ccccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDY-DRLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~-~~~~~~~~~~~d~~i 218 (330)
+.+ -.....+++.+|+++
T Consensus 299 -------------------------------------------------------------e~~gi~~~~~~~~~aD~vl 317 (476)
T 3gee_A 299 -------------------------------------------------------------EHEGIRRSRMKMAEADLIL 317 (476)
T ss_dssp ----------------------------------------------------------------------CCCSSCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHhhcccCCEEE
Confidence 111 012344678999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.+++++. .+...+.. ..+.|+++|+||+|+... +.. +.+.+.+... .+++++||
T Consensus 318 ~VvD~s~~~s~~~~~-~~~~~l~~-l~~~piIvV~NK~Dl~~~------------~~~---~~~~l~~~~~-~~~i~vSA 379 (476)
T 3gee_A 318 YLLDLGTERLDDELT-EIRELKAA-HPAAKFLTVANKLDRAAN------------ADA---LIRAIADGTG-TEVIGISA 379 (476)
T ss_dssp EEEETTTCSSGGGHH-HHHHHHHH-CTTSEEEEEEECTTSCTT------------THH---HHHHHHHHHT-SCEEECBT
T ss_pred EEEECCCCcchhhhH-HHHHHHHh-cCCCCEEEEEECcCCCCc------------cch---hHHHHHhcCC-CceEEEEE
Confidence 999999999986433 22222222 237999999999999764 222 1234444422 68999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-20 Score=172.66 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=114.1
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
.....+||+++|+.|+|||||+++|++..+. ..+..+..+.....+...+. ..+.+|||+|++.+..+..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~------- 101 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGR------- 101 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCC-------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhH-------
Confidence 3456789999999999999999999998763 33444444445556666554 2788999999855443321
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
.+.. ....+++.+|+
T Consensus 102 ----------------------------------------------------------------~~~~-~~~~~l~~aD~ 116 (423)
T 3qq5_A 102 ----------------------------------------------------------------LRVE-KARRVFYRADC 116 (423)
T ss_dssp ----------------------------------------------------------------CCHH-HHHHHHTSCSE
T ss_pred ----------------------------------------------------------------HHHH-HHHHHHhcCCE
Confidence 1111 12335778999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+++|||++..+.. . .|+..+.+. +.|+++|+||+|+..+ +.. +.++.+++.++ ++++++
T Consensus 117 vllVvD~~~~~~~---~-~~l~~l~~~--~~piIvV~NK~Dl~~~------------~~~--~~~~~l~~~~g-~~v~~v 175 (423)
T 3qq5_A 117 GILVTDSAPTPYE---D-DVVNLFKEM--EIPFVVVVNKIDVLGE------------KAE--ELKGLYESRYE-AKVLLV 175 (423)
T ss_dssp EEEECSSSCCHHH---H-HHHHHHHHT--TCCEEEECCCCTTTTC------------CCT--HHHHHSSCCTT-CCCCCC
T ss_pred EEEEEeCCChHHH---H-HHHHHHHhc--CCCEEEEEeCcCCCCc------------cHH--HHHHHHHHHcC-CCEEEE
Confidence 9999998433222 2 566666664 8999999999999865 222 66677777777 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+.+.+.+.+.
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999998654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-19 Score=158.33 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=109.5
Q ss_pred EEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccc
Q psy9997 78 CLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNR 156 (330)
Q Consensus 78 sl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 156 (330)
+|+.+|+.+.|. ..|.||+|+.+...+..++ .+.+||+ +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--q----------------------------------- 71 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--L----------------------------------- 71 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--C-----------------------------------
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--c-----------------------------------
Confidence 799999999998 8999999987764432222 6778887 6
Q ss_pred ccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChh-hHhhhhhc
Q psy9997 157 KLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEK 235 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~ 235 (330)
++|+.+++.+++++|++++|||++++. +|+.+. .
T Consensus 72 --------------------------------------------er~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~ 106 (301)
T 1u0l_A 72 --------------------------------------------HRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K 106 (301)
T ss_dssp --------------------------------------------CCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred --------------------------------------------cccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence 667777788899999999999999997 788887 8
Q ss_pred chhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC-eeEEEEeeccCCCHHHHHHHHHH
Q psy9997 236 WVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA-VKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 236 ~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
|+..+.. .++|+++|+||+|+..+ +.+ +++.++++.++. .+|+++||++|.|++++|..+..
T Consensus 107 ~l~~~~~--~~~piilv~NK~DL~~~------------~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 107 FLVLAEK--NELETVMVINKMDLYDE------------DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHH--TTCEEEEEECCGGGCCH------------HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHH--CCCCEEEEEeHHHcCCc------------hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 9988765 48999999999999753 222 557778877753 58999999999999999987653
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-19 Score=169.38 Aligned_cols=158 Identities=23% Similarity=0.302 Sum_probs=115.4
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCc-cccccCCCCCCCCceEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~l~~~~~~~~~~~i 139 (330)
.+||+++|++|+|||||+++|.+.. +...+..|.-+.....+.+++. .+.+|||+|++ .+....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~v----------- 309 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLV----------- 309 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTC-----------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhH-----------
Confidence 3899999999999999999999875 3566666666666677777764 57899999984 322111
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~i 218 (330)
+.+. .....+++.+|+++
T Consensus 310 -------------------------------------------------------------e~~gi~~~~~~~~~aD~vl 328 (482)
T 1xzp_A 310 -------------------------------------------------------------ERLGIERTLQEIEKADIVL 328 (482)
T ss_dssp -------------------------------------------------------------CCCCHHHHHHHHHHCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhhcccEEE
Confidence 1110 11123577899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.++++.. ++..+ .+.|+++|+||+|+... +..+++..++. .+ .+++++||
T Consensus 329 ~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~-~~~i~iSA 386 (482)
T 1xzp_A 329 FVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TD-RHMVKISA 386 (482)
T ss_dssp EEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CS-TTEEEEEG
T ss_pred EEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CC-CcEEEEEC
Confidence 999999998887754 33333 47899999999999642 33445544432 22 57999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 387 ktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GGTCCHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=160.76 Aligned_cols=168 Identities=22% Similarity=0.227 Sum_probs=114.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCC-CCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++++++|++|+|||||++++.+..+... +..+........+.. ....+.+|||+|......
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~-------------- 229 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPI-------------- 229 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCS--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccch--------------
Confidence 457899999999999999999998764221 111111111111222 245688999999832110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
|+..+.+. ... ..+...+|++++|
T Consensus 230 ------------------------------------------------------~~~~~~~~-~~~-~~~~~~ad~illV 253 (357)
T 2e87_A 230 ------------------------------------------------------SERNEIEK-QAI-LALRYLGNLIIYI 253 (357)
T ss_dssp ------------------------------------------------------TTSCHHHH-HHH-HGGGGTCSEEEEE
T ss_pred ------------------------------------------------------hhhhHHHH-HHH-HHHHhcCCEEEEE
Confidence 00000010 111 1234568999999
Q ss_pred EEcCChh--hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPS--SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|++++. +++... .|+..+.....+.|+++|+||+|+... .. .+++.++++..+ .+++++||
T Consensus 254 ~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~------------~~--~~~~~~~~~~~~-~~~~~iSA 317 (357)
T 2e87_A 254 FDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADE------------EN--IKRLEKFVKEKG-LNPIKISA 317 (357)
T ss_dssp ECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCH------------HH--HHHHHHHHHHTT-CCCEECBT
T ss_pred EeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCCh------------HH--HHHHHHHHHhcC-CCeEEEeC
Confidence 9999887 677776 788888776568999999999999753 11 245666777766 78999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+...+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988743
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-19 Score=163.36 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=115.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+|+++|.+|+|||||+++++..+.. ..|..|.-......+.+++ ...+.+|||+|+....
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a----------------- 220 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGA----------------- 220 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHT-----------------
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccc-----------------
Confidence 36889999999999999999987642 2333222111112233333 2467788888862100
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc---ccCCCEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS---YPQTDVFLV 219 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~---~~~~d~~il 219 (330)
..+..+...+ ++.++++++
T Consensus 221 ----------------------------------------------------------~~~~~l~~~fl~~i~~~d~ll~ 242 (342)
T 1lnz_A 221 ----------------------------------------------------------HQGVGLGHQFLRHIERTRVIVH 242 (342)
T ss_dssp ----------------------------------------------------------TCTTTTHHHHHHHHHHCCEEEE
T ss_pred ----------------------------------------------------------cccchhHHHHHHHHHhccEEEE
Confidence 1112222223 345999999
Q ss_pred EEEcCC---hhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC-ee
Q psy9997 220 CFSVVS---PSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA-VK 292 (330)
Q Consensus 220 v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~ 292 (330)
|+|+++ +.+++++. .|+.++..+. .+.|+++|+||+|+... .+..+.+++.+.. .+
T Consensus 243 VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----------------~e~~~~l~~~l~~~~~ 305 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA----------------AENLEAFKEKLTDDYP 305 (342)
T ss_dssp EEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH----------------HHHHHHHHHHCCSCCC
T ss_pred EEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC----------------HHHHHHHHHHhhcCCC
Confidence 999998 88999988 8999988764 47999999999999643 1345667776653 57
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
++++||+++.|++++|+.+.+.+.+.+.
T Consensus 306 v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 306 VFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999977654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=166.00 Aligned_cols=162 Identities=18% Similarity=0.123 Sum_probs=105.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+|+++|.+|||||||+|+|++.++ ...++.+..+.....+..++. .+.+|||+|++....-
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~-------------- 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQD-------------- 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGG--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccc--------------
Confidence 3799999999999999999998874 344444444455556777765 4688999998431100
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.-++.+......+++.||++++|+
T Consensus 66 --------------------------------------------------------~~~~~~~~~~~~~~~~ad~il~V~ 89 (439)
T 1mky_A 66 --------------------------------------------------------IISQKMKEVTLNMIREADLVLFVV 89 (439)
T ss_dssp --------------------------------------------------------CCCHHHHHHHHHHHTTCSEEEEEE
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHHHhCCEEEEEE
Confidence 000344555667889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH-HHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG-EKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++..+..+.. +...++. .+.|+++|+||+|+... . ..++ ..+. .++...++++||++
T Consensus 90 D~~~~~~~~d~~--i~~~l~~--~~~p~ilv~NK~D~~~~--------------~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 90 DGKRGITKEDES--LADFLRK--STVDTILVANKAENLRE--------------F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp ETTTCCCHHHHH--HHHHHHH--HTCCEEEEEESCCSHHH--------------H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred ECCCCCCHHHHH--HHHHHHH--cCCCEEEEEeCCCCccc--------------c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 998866654421 2222222 37899999999998421 0 1222 3443 34533689999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.+...+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999988753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-19 Score=167.64 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=98.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..+|+++|.+|||||||+++|++.++.. ..++.|..... ...+.-....+.+|||+|++....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--------------- 66 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--------------- 66 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcch---------------
Confidence 4689999999999999999999877531 12222322211 122222334677788877721000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.. .+.+......+++.||++++|+
T Consensus 67 ---------~~-----------------------------------------------~~~~~~~~~~~~~~ad~il~vv 90 (436)
T 2hjg_A 67 ---------PF-----------------------------------------------LAQIRQQAEIAMDEADVIIFMV 90 (436)
T ss_dssp ---------CH-----------------------------------------------HHHHHHHHHHHHHHCSEEEEEE
T ss_pred ---------hH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 00 0345566667788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|+++..++.+.. +...+.. .+.|+++|+||+|+.... . ++.++. ..+...++++||++|
T Consensus 91 D~~~~~~~~d~~--~~~~l~~--~~~pvilv~NK~D~~~~~------------~----~~~~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 91 NGREGVTAADEE--VAKILYR--TKKPVVLAVNKLDNTEMR------------A----NIYDFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp ETTTCSCHHHHH--HHHHHTT--CCSCEEEEEECCCC---------------------CCCSSG-GGSSCCCEECBTTTT
T ss_pred eCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECccCccch------------h----hHHHHH-HcCCCCeEEEeCcCC
Confidence 999887766532 3333433 478999999999996531 0 011122 234337899999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+++...+-+
T Consensus 150 ~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp BTHHHHHHHHHHTGGG
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988864
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-18 Score=157.42 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=83.9
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcC----------ChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV----------SPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~ 260 (330)
.+||++||++++.++..++++++++|+|||++ +..+|+++. .|+..+... ..++|++|||||+|+..
T Consensus 186 ~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 186 RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKFDIFE 264 (354)
T ss_dssp EEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred EEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEEEECcchhh
Confidence 33444444666666677777777777777776 788999988 788777654 37899999999999954
Q ss_pred CchhhHHh-----hhCCC----CCcCHHHHHHHHHHh---------------CCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 261 DAPTLEKL-----AKNKQ----KPISFEQGEKLAKEL---------------KAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 261 ~~~~~~~~-----~~~~~----~~v~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+......+ -++.. ...+.+++.+|+... ..+.+++|||+++.||+++|+.+.+.++
T Consensus 265 ~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 265 KKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 31100000 00110 112467888885531 2345799999999999999999998886
Q ss_pred C
Q psy9997 317 E 317 (330)
Q Consensus 317 ~ 317 (330)
+
T Consensus 345 ~ 345 (354)
T 2xtz_A 345 R 345 (354)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=154.45 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCC----hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|...+...+..+|++++|+|+++ +++++.+. .| .. ....|+++|+||+|+.....
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~----~~-l~~~~iivv~NK~Dl~~~~~--- 152 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-AL----EI-LGIDKIIIVQNKIDLVDEKQ--- 152 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-HH----HH-TTCCCEEEEEECTTSSCTTT---
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-HH----HH-cCCCeEEEEEEccCCCCHHH---
Confidence 45678888888887777777888999999999984 56666554 22 11 12358999999999976411
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.....+++.++++.. ...+++++||++|.|++++++.+...+..+..
T Consensus 153 -------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~ 201 (408)
T 1s0u_A 153 -------AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR 201 (408)
T ss_dssp -------TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCC
T ss_pred -------HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 223456667776653 23689999999999999999999987765543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-19 Score=163.31 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=95.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccC-CCCCCCC--------Cceeecc-eEEEEECCceeeeeeeecCCC-------ccc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTN-KFPSEYV--------PTVFDNY-AVTVMIGGEPYTLGLFDTAGQ-------EDY 124 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~-~~~~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~-------~~~ 124 (330)
..++|+++|++|+|||||++++.+. .+...+. +|++..+ ...+..++....+.+|||+|+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3589999999999999999996654 4444432 4544333 223444566778999999998 222
Q ss_pred cccCC-------CCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccc
Q psy9997 125 DRLRP-------LSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDT 197 (330)
Q Consensus 125 ~~l~~-------~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~ 197 (330)
..+.. .|++
T Consensus 116 ~~i~~~i~~~~~~yl~---------------------------------------------------------------- 131 (361)
T 2qag_A 116 KTIISYIDEQFERYLH---------------------------------------------------------------- 131 (361)
T ss_dssp CCTHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 22221 1110
Q ss_pred ccccccccccCccccCCCEEEEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCc
Q psy9997 198 AGQEDYDRLRPLSYPQTDVFLVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPI 276 (330)
Q Consensus 198 ~g~e~~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v 276 (330)
+ -.......+.++.+.+++|++++ ..++..+...|+..+ ..++|+|+|+||+|+... +.+
T Consensus 132 ---~-~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~------------~ev 192 (361)
T 2qag_A 132 ---D-ESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTL------------KER 192 (361)
T ss_dssp ---H-HTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCH------------HHH
T ss_pred ---H-hhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCH------------HHH
Confidence 0 01111124556667778888886 677777664455554 357999999999999764 333
Q ss_pred CH--HHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 277 SF--EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 277 ~~--~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.. +++.++++.++ ++++++||++|.+ ++.|..+...+.+.
T Consensus 193 ~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 193 ERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 33 56777777776 7999999999999 88888888877644
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=156.89 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=88.2
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
..+.+||++|++.|.......+..+|++++|+|+++..++.+.. .|+..+... ...|+++|+||+|+.....
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~-~~~~iivviNK~Dl~~~~~------ 146 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGII-GVKNLIIVQNKVDVVSKEE------ 146 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHc-CCCCEEEEEECccccchHH------
Confidence 45678999999999888888899999999999999887777766 566555443 2369999999999975421
Q ss_pred hCCCCCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 270 KNKQKPISFEQGEKLAKELK--AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.....++..++.+..+ ..+++++||++|.|++++|+.+...+..+...
T Consensus 147 ----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~ 196 (403)
T 3sjy_A 147 ----ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD 196 (403)
T ss_dssp ----HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC
T ss_pred ----HHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC
Confidence 0111223333333221 36899999999999999999999877655443
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-18 Score=161.40 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=105.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+..+ ...+..|..+.+...+.+++. .+.+|||+|.+.+....
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~v----------- 289 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQV----------- 289 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHH-----------
Confidence 358999999999999999999998653 444444444555556777764 46899999984322111
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccc-ccccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDY-DRLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~-~~~~~~~~~~~d~~i 218 (330)
+.+ -.....+++.+|+++
T Consensus 290 -------------------------------------------------------------e~~gi~~~~~~~~~aD~vl 308 (462)
T 3geh_A 290 -------------------------------------------------------------EKIGVERSRQAANTADLVL 308 (462)
T ss_dssp ----------------------------------------------------------------------CCCCSCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHhhhhhcCCEEE
Confidence 111 011234677899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|+|.+++.++... .|+..+. +.|+++|+||+|+..... +. ....+. ...+++++||
T Consensus 309 ~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~------------~~--~~~~~~---~~~~~i~iSA 365 (462)
T 3geh_A 309 LTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQL------------IT--SLEYPE---NITQIVHTAA 365 (462)
T ss_dssp EEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGG------------ST--TCCCCT---TCCCEEEEBT
T ss_pred EEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchh------------hH--HHHHhc---cCCcEEEEEC
Confidence 99999998777663 3655553 479999999999976421 11 111111 2368999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+.+.+....
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999887654
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-18 Score=168.29 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=75.6
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+|||+|++.|...+..++..+|++++|+|+++....+... ++..+.. .++|+++|+||+|+.....
T Consensus 54 i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e--~l~~~~~--~~vPiIVViNKiDl~~~~~-------- 121 (537)
T 3izy_P 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE--SIQHAKD--AHVPIVLAINKCDKAEADP-------- 121 (537)
T ss_dssp CBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHH--HHHHHHT--TTCCEEECCBSGGGTTTSC--------
T ss_pred EEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHH--HHHHHHH--cCCcEEEEEecccccccch--------
Confidence 456666666888888888889999999999999866555544 2222222 4789999999999975421
Q ss_pred CCCCcCHHHHHHH---HHHh-CCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 272 KQKPISFEQGEKL---AKEL-KAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 272 ~~~~v~~~~~~~~---~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
..+. ++...+ +..+ +.++++++||++|.|++++|+.+...+-
T Consensus 122 --~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 122 --EKVK-KELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp --CSSS-SHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred --HHHH-HHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 1111 111111 1112 2368999999999999999999988764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-18 Score=141.70 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=79.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC---CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+||+++|++|||||||++++.+..+.. .+.++.+. +.....+.+|||+|+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~---------------- 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGH---------------- 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTC----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCC----------------
Confidence 456899999999999999999999987643 12222211 113345556666665
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC----
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---- 213 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---- 213 (330)
+.+...+..++..
T Consensus 102 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 102 ---------------------------------------------------------------VKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp ---------------------------------------------------------------CBSSCCHHHHHHHHGGG
T ss_pred ---------------------------------------------------------------chHHHHHHHHHHhhccc
Confidence 4444444444444
Q ss_pred CCEEEEEEEcC-ChhhHhhhhhcchhhhhhc-----CCCCcEEEEEeccCCCCC
Q psy9997 214 TDVFLVCFSVV-SPSSFENVKEKWVPEITHH-----CQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 214 ~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilV~nK~Dl~~~ 261 (330)
+|++++|||++ ++.+|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCCchhHHHHH-HHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 999999988 677666543 258999999999999764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-17 Score=148.01 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=107.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCc-cccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~l~~~~~~~~~~ 137 (330)
.+..+|+++|++|+|||||++++++.++. .....|........+ ......+.+|||||.. ....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~--~~~~~~i~~iDTpG~~~~~~~----------- 72 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH--TEGAYQAIYVDTPGLHMEEKR----------- 72 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE--EETTEEEEEESSSSCCHHHHH-----------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE--EECCeeEEEEECcCCCccchh-----------
Confidence 44568999999999999999999988752 122222211111112 2234567778888772 1000
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
... +.+......+++.+|++
T Consensus 73 -------------~l~-----------------------------------------------~~~~~~~~~~l~~~D~v 92 (301)
T 1ega_A 73 -------------AIN-----------------------------------------------RLMNKAASSSIGDVELV 92 (301)
T ss_dssp -------------HHH-----------------------------------------------HHHTCCTTSCCCCEEEE
T ss_pred -------------hHH-----------------------------------------------HHHHHHHHHHHhcCCEE
Confidence 000 13344556678899999
Q ss_pred EEEEEcCChhhHhhhhhcch-hhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWV-PEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~-~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|+|.++ +.... .|+ ..+.. .+.|+++|+||+|+... +....+.+..+++.++...++++
T Consensus 93 l~Vvd~~~---~~~~~-~~i~~~l~~--~~~P~ilvlNK~D~~~~------------~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 93 IFVVEGTR---WTPDD-EMVLNKLRE--GKAPVILAVNKVDNVQE------------KADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp EEEEETTC---CCHHH-HHHHHHHHS--SSSCEEEEEESTTTCCC------------HHHHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEEeCCC---CCHHH-HHHHHHHHh--cCCCEEEEEECcccCcc------------HHHHHHHHHHHHHhcCcCceEEE
Confidence 99999976 33333 233 22322 47899999999999752 12233455666666664479999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++++.+...+-+
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCB
T ss_pred ECCCCCCHHHHHHHHHHhCCc
Confidence 999999999999999877643
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=145.74 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=106.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCC-CCCCCCCc-e-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPT-V-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~~~t-~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
....+||+++|++|+|||||++++++.. +...+.++ + .......+..++ ..+.+|||||...+......+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~----- 91 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEAL----- 91 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHH-----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHH-----
Confidence 3457899999999999999999999877 55555554 2 222233444444 468889999983221100000
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
.+........+++.+|+
T Consensus 92 ---------------------------------------------------------------~~~i~~~~~~~~~~~d~ 108 (260)
T 2xtp_A 92 ---------------------------------------------------------------YKEVQRCYLLSAPGPHV 108 (260)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHTTCCSE
T ss_pred ---------------------------------------------------------------HHHHHHHHHhcCCCCcE
Confidence 00111122235678999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEe-ccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGT-QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~n-K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
+++|+|+++ +......++..+.+.. ...|.++|+| |+|+.... ....+. ....++++.+++..+...
T Consensus 109 il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~-----~~~~~~~~~~~~~~~~~~ 179 (260)
T 2xtp_A 109 LLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMH-----DSDNKALSKLVAACGGRI 179 (260)
T ss_dssp EEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHH-----HCCCHHHHHHHHHTTTCE
T ss_pred EEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHH-----hcchHHHHHHHHHhCCeE
Confidence 999999986 2222212223333322 1346666555 99997431 000000 011144556777665311
Q ss_pred --E--EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 293 --Y--VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 293 --~--~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+ +++||++|.|++++|+.+...+.+.
T Consensus 180 ~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 180 CAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 3 7899999999999999998887653
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-17 Score=157.54 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=78.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+.+||++|++.|.......+..+|++++|+|+++ +++++.+. ++ .. .++|+++|+||+|+..+..
T Consensus 75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~--~~---~~--~~ip~IvviNK~Dl~~~~~----- 142 (482)
T 1wb1_A 75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML--IL---DH--FNIPIIVVITKSDNAGTEE----- 142 (482)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH--HH---HH--TTCCBCEEEECTTSSCHHH-----
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH--HH---HH--cCCCEEEEEECCCcccchh-----
Confidence 3456666667777777777889999999999987 66666554 22 22 3688999999999975311
Q ss_pred hhCCCCCcCHHHHHHHHHHh---CCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 269 AKNKQKPISFEQGEKLAKEL---KAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.....+++.++++.. ...+++++||++|.|++++++.+...+-
T Consensus 143 -----~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 143 -----IKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp -----HHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 112334566666554 1368999999999999999999988764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-17 Score=143.94 Aligned_cols=179 Identities=15% Similarity=0.049 Sum_probs=106.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce--eecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--FDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~--~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
....+||+++|++|+|||||++++++..+.....++. .... ...+..++ ..+.+|||||.......
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~--------- 94 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVP--------- 94 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC--------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCC---------
Confidence 4567999999999999999999999988765554422 2222 22444554 46789999997210000
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
.. .-++.+......+++.+|+
T Consensus 95 -----------~~------------------------------------------------~~~~~~~~~~~~~~~~~~~ 115 (239)
T 3lxx_A 95 -----------NA------------------------------------------------ETSKEIIRCILLTSPGPHA 115 (239)
T ss_dssp -----------CH------------------------------------------------HHHHHHHHHHHHTTTCCSE
T ss_pred -----------HH------------------------------------------------HHHHHHHHHHHhcCCCCcE
Confidence 00 0002333334445678999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
+++|+|+++.... .. .|+..+.... ...|+++|+||+|+........- -....+.++.+++..+ ..|
T Consensus 116 ~l~v~d~~~~~~~-~~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~------i~~~~~~l~~l~~~~~-~~~ 185 (239)
T 3lxx_A 116 LLLVVPLGRYTEE-EH--KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY------LREAPEDIQDLMDIFG-DRY 185 (239)
T ss_dssp EEEEEETTCCSSH-HH--HHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHHHHHHHHHHS-SSE
T ss_pred EEEEeeCCCCCHH-HH--HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH------HHhchHHHHHHHHHcC-CEE
Confidence 9999999754332 11 3444443322 24699999999999754110000 0011246788888887 478
Q ss_pred EEEeeccC-----CCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQ-----KGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~-----~~v~~~f~~l~~~i~~~ 318 (330)
+.++++.+ .++.++|..+...+.+.
T Consensus 186 ~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 186 CALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 77776643 78999999888777553
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-17 Score=157.68 Aligned_cols=101 Identities=12% Similarity=0.188 Sum_probs=61.1
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhh----hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK----EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~----~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
+|||+|++.|...+..+++.+|++++|+|+++..++..+. ..++..+.......|+|+|+||+|+...
T Consensus 115 iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~-------- 186 (483)
T 3p26_A 115 IVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-------- 186 (483)
T ss_dssp EECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT--------
T ss_pred EEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc--------
Confidence 3344444777677777788999999999999876654431 0111112222234579999999999763
Q ss_pred hCCCCCcCH----HHHHHHHHHhC----CeeEEEEeeccCCCHHH
Q psy9997 270 KNKQKPISF----EQGEKLAKELK----AVKYVECSALTQKGLKN 306 (330)
Q Consensus 270 ~~~~~~v~~----~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 306 (330)
++... +++..+....+ .++++++||++|.|+++
T Consensus 187 ----~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 ----SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ----hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22222 33444444443 26899999999999975
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=151.50 Aligned_cols=124 Identities=12% Similarity=0.152 Sum_probs=86.0
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCC----------hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~ 260 (330)
.+||++||++++.++..+|++++++|+|||+++ ..+|+++. .|+..+... ..++|++|||||+|+..
T Consensus 220 ~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 220 HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp EEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred eecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence 344444447777777778888888888888887 89999998 888888764 46899999999999954
Q ss_pred Cchh-----hHHhhhCCC------------CC-cCHHHHHHHHHH-----h-------CCeeEEEEeeccCCCHHHHHHH
Q psy9997 261 DAPT-----LEKLAKNKQ------------KP-ISFEQGEKLAKE-----L-------KAVKYVECSALTQKGLKNVFDE 310 (330)
Q Consensus 261 ~~~~-----~~~~~~~~~------------~~-v~~~~~~~~~~~-----~-------~~~~~~e~Sa~~~~~v~~~f~~ 310 (330)
+... ....-++.. .. .+.+++..|+.. . ..+.+++|||+++.||+++|..
T Consensus 299 ~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~ 378 (402)
T 1azs_C 299 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378 (402)
T ss_dssp HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHH
T ss_pred hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHH
Confidence 3110 000000000 00 125677777422 1 2367899999999999999999
Q ss_pred HHHHhcC
Q psy9997 311 AILAALE 317 (330)
Q Consensus 311 l~~~i~~ 317 (330)
+...+++
T Consensus 379 v~~~I~~ 385 (402)
T 1azs_C 379 CRDIIQR 385 (402)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=152.73 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=77.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|......+++.+|++++|+|+++..+++... .|..... .++|+++|+||+|+... + ..+.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~~---~~ipiIvViNKiDl~~a------------~--~~~v 143 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAME---MDLEVVPVLNKIDLPAA------------D--PERV 143 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHHH---TTCEEEEEEECTTSTTC------------C--HHHH
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEeeeccCcccc------------c--HHHH
Confidence 445555556678899999999999988887776 5655443 37899999999999754 1 2233
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
..++.+.++. ..++++||++|.|++++|+.+++.+-.+..
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 4556666652 148999999999999999999998876543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-17 Score=148.85 Aligned_cols=185 Identities=17% Similarity=0.175 Sum_probs=93.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC-CCCCC-------CCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK-FPSEY-------VPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 132 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~-------~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~ 132 (330)
..++|+++|.+|+|||||++++++.. +...+ .+|++..+. ..+..++..+.+.+|||||..........
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~-- 84 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC-- 84 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT--
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh--
Confidence 46899999999999999999966544 55555 566654443 35556677789999999998322110000
Q ss_pred CCCceEEEEeccccchhhhccccc-ccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-Ccc
Q psy9997 133 PQTDVFLVCFGNMMNIRRSVDWNR-KLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLS 210 (330)
Q Consensus 133 ~~~~~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~ 210 (330)
.....+.-. ....++ .+.....+ ...
T Consensus 85 ---------------~~~i~~~i~~~~~~~l-------------------------------------~~~~~~~r~~~~ 112 (274)
T 3t5d_A 85 ---------------WQPVIDYIDSKFEDYL-------------------------------------NAESRVNRRQMP 112 (274)
T ss_dssp ---------------THHHHHHHHHHHHHHH-------------------------------------HHHHSSCCCSCC
T ss_pred ---------------HHHHHHHHHHHHHHHH-------------------------------------Hhhccccccccc
Confidence 000000000 000000 00000001 112
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
-..+|+++++.+.+... +......++..+.. ++|+++|+||+|+..... .....+.+.+.....+
T Consensus 113 d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e----------~~~~~~~i~~~l~~~~- 177 (274)
T 3t5d_A 113 DNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEE----------CQQFKKQIMKEIQEHK- 177 (274)
T ss_dssp CCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHH----------HHHHHHHHHHHHHHTT-
T ss_pred CCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHH----------HHHHHHHHHHHHHHcC-
Confidence 23477888888766532 22222245555554 799999999999965311 1112234455555666
Q ss_pred eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 291 VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
++++++||+++.|++++++.+...+
T Consensus 178 i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 178 IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp CCCCCC-----------CHHHHHTC
T ss_pred CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 7899999999999999999988764
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=150.65 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=80.5
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCC----hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|.......+..+|++++|+|+++ +++++.+. .| . .. ...|+++|+||+|+.....
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~-~---~~-~~~~iivviNK~Dl~~~~~--- 154 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-AL-Q---II-GQKNIIIAQNKIELVDKEK--- 154 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HH-H---HH-TCCCEEEEEECGGGSCHHH---
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HH-H---Hc-CCCcEEEEEECccCCCHHH---
Confidence 45677777778887766667788999999999984 45665554 22 1 11 2468999999999976421
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.....+++.++++.. ...+++++||++|.|++++++.+...+..+..
T Consensus 155 -------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~ 203 (410)
T 1kk1_A 155 -------ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKR 203 (410)
T ss_dssp -------HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred -------HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 112334555555542 23689999999999999999999987765543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=146.21 Aligned_cols=171 Identities=20% Similarity=0.154 Sum_probs=109.8
Q ss_pred eEe-EEEeecCCCceeEEEEeeccCCCCC-CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIK-CVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~k-i~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.++ ++++|++|+|||||++++.+..+.. .+..+.-+.....+.+++ ..+.+|||+|.-.. +...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~--lp~~---------- 243 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRG--IPPQ---------- 243 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSS--CCGG----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhc--CCHH----------
Confidence 355 8999999999999999999877532 222233334455677777 45689999997110 0000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
-.+.+..... .+..+|++++|
T Consensus 244 ----------------------------------------------------------lve~f~~tl~-~~~~aD~il~V 264 (364)
T 2qtf_A 244 ----------------------------------------------------------IVDAFFVTLS-EAKYSDALILV 264 (364)
T ss_dssp ----------------------------------------------------------GHHHHHHHHH-GGGGSSEEEEE
T ss_pred ----------------------------------------------------------HHHHHHHHHH-HHHhCCEEEEE
Confidence 0022332222 46789999999
Q ss_pred EEcCChh--hHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-C-CeeEEE
Q psy9997 221 FSVVSPS--SFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-K-AVKYVE 295 (330)
Q Consensus 221 ~d~~~~~--s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~e 295 (330)
+|++++. +++.+. .|...+.... .+.|+++|+||+|+..... ....+.+..+++.+ . ..++++
T Consensus 265 vD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 265 IDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDL-----------YKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp EETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCH-----------HHHHHHHHHHHHHHCSCEEEEEE
T ss_pred EECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchH-----------HHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999887 566554 5555555443 5789999999999975310 00122344455655 2 247899
Q ss_pred EeeccCCCHHHHHHHHHHHhcCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+||++|.|++++++.+...+..+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHhccc
Confidence 99999999999999998877544
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-16 Score=150.72 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=76.3
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|......+++.+|++++|+|+++..+++... .|..... .++|+++|+||+|+... + ..+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~~---~~ipiIvviNKiDl~~a------------~--~~~v 145 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAVE---QDLVIIPVINKIDLPSA------------D--VDRV 145 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHHH---TTCEEEEEEECTTSTTC------------C--HHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---CCCCEEEEEeccCcccc------------C--HHHH
Confidence 445444555678899999999999988888776 6655443 37899999999999754 1 1233
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
..++.+.++. ..++++||++|.|++++|+.+++.+-.+..
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~ 187 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG 187 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence 4556565552 248999999999999999999998876543
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-17 Score=155.02 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=79.3
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-----CC-CcEEEEEeccCCCCCchhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QK-TPFLLVGTQIDLREDAPTL 265 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~-~piilV~nK~Dl~~~~~~~ 265 (330)
+.+|||+|++.|...+..++..+|++++|+|+++ .+|+++. .|..+..++. .+ .|+++|+||+|+.......
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~-~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH-STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc-ccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 4566666668887777778899999999999998 7888876 6766665543 24 4699999999997631000
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKNVFD 309 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~~f~ 309 (330)
+. .....++++++++.++ .++++++||++|.|+.++++
T Consensus 164 ~~------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 164 KR------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HH------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HH------HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 00 0223466777887766 26799999999999986554
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-16 Score=155.13 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=77.0
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|...+..+++.+|++++|+|+++ +++++.+. ++ .. .++|+++|+||+|+......
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~--~l---~~--~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN--IL---RM--YRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH--HH---HH--TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH--HH---HH--cCCeEEEEecccccccccccccCC
Confidence 4577777778888888888999999999999999 88887765 22 22 47899999999999643110
Q ss_pred --hHHhhhCCC--CCcCHH---HH-HHHHHH-------------hCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 265 --LEKLAKNKQ--KPISFE---QG-EKLAKE-------------LKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 265 --~~~~~~~~~--~~v~~~---~~-~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+....... +....+ +. ..+.+. .+.++++++||++|.|++++++.+...+
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 000000000 000000 11 111111 1225899999999999999999998765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-17 Score=156.43 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=98.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|...+|+++|.+|||||||+++|.+.++.. ..++.|.... ....+......+.+|||+|....
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--------------- 84 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--------------- 84 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC-------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCc---------------
Confidence 566799999999999999999999877531 1222333322 12333444556778888875100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+...++.+......+++.+|++++
T Consensus 85 --------------------------------------------------------~~~~~~~~~~~~~~~~~~ad~il~ 108 (456)
T 4dcu_A 85 --------------------------------------------------------DEPFLAQIRQQAEIAMDEADVIIF 108 (456)
T ss_dssp ----------------------------------------------------------CCHHHHHHHHHHHHHHCSEEEE
T ss_pred --------------------------------------------------------chHHHHHHHHHHHhhHhhCCEEEE
Confidence 000136677777778899999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|..+..+..+. .+...+.+ .+.|+++|+||+|+.... ++...+. ..+...++++||+
T Consensus 109 VvD~~~~~~~~d~--~l~~~l~~--~~~pvilV~NK~D~~~~~----------------~~~~e~~-~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 109 MVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMR----------------ANIYDFY-SLGFGEPYPISGT 167 (456)
T ss_dssp EEESSSCSCHHHH--HHHHHHTT--CCSCEEEEEECC-------------------------CCSG-GGSSSSEEECCTT
T ss_pred EEeCCCCCChHHH--HHHHHHHH--cCCCEEEEEECccchhhh----------------hhHHHHH-HcCCCceEEeecc
Confidence 9998764443332 23333433 589999999999986431 0111111 1232356899999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+...+-+
T Consensus 168 ~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TCTTHHHHHHHHHTTGGG
T ss_pred cccchHHHHHHHHhhccc
Confidence 999999999999887753
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-17 Score=148.05 Aligned_cols=125 Identities=13% Similarity=0.140 Sum_probs=85.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC----------hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLR 259 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~ 259 (330)
+.+||++||++++..+..++++++++|+|||+++ ..+|++.. .|+..+... ..++|+|||+||+|+.
T Consensus 203 l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~-~~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 203 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred EEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH-HHHHHHhcchhhCCCCEEEEEEChhhh
Confidence 3445555557777788888888888888898888 78899888 677776653 4789999999999996
Q ss_pred CCchh---hHHhhhCCCCC-cCHHHHHHHHHH----------hCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 260 EDAPT---LEKLAKNKQKP-ISFEQGEKLAKE----------LKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 260 ~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.+... ....-++.... ++.+++..|+.. ...+.++++||+++.||+++|..+.+.+++
T Consensus 282 ~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 282 EEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 43110 11111222233 778899888721 123679999999999999999999988864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-16 Score=133.19 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=101.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+++++|++|+|||||++++.+..+...+.|+.|..+. ..+.+++ .+.+|||+|...... ..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~-~~----------- 89 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEV-PE----------- 89 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCccccc-CH-----------
Confidence 4578999999999999999999988766666677665543 2334433 577899999721000 00
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc---ccCCCEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS---YPQTDVF 217 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~---~~~~d~~ 217 (330)
. ..+.+......+ ...++++
T Consensus 90 --------~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 112 (210)
T 1pui_A 90 --------E-------------------------------------------------MKRKWQRALGEYLEKRQSLQGL 112 (210)
T ss_dssp --------C-------------------------------------------------CHHHHHHHHHHHHHHCTTEEEE
T ss_pred --------H-------------------------------------------------HHHHHHHHHHHHHHhhhcccEE
Confidence 0 001111111112 2467899
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~ 296 (330)
++++|++++.++.... ....+.. .+.|+++|+||+|+..... ++...+.+++++...+ .+.++++
T Consensus 113 ~~v~d~~~~~~~~~~~--~~~~~~~--~~~~~~~v~nK~D~~s~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 113 VVLMDIRHPLKDLDQQ--MIEWAVD--SNIAVLVLLTKADKLASGA----------RKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp EEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCHHH----------HHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred EEEEECCCCCchhHHH--HHHHHHH--cCCCeEEEEecccCCCchh----------HHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999876654321 1111221 4789999999999865311 2223456666666554 3678999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||+++.|++++++.+.+.+-+.
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC--
T ss_pred eecCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999988876543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-16 Score=142.61 Aligned_cols=86 Identities=8% Similarity=-0.032 Sum_probs=52.3
Q ss_pred EEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+++|.... ..+++.+.. ..+.+...+.|+++|+||.|+....+ ..+..++++++++.++ ++|+++
T Consensus 129 ~ll~ldePt~~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e----------~~~~~~~~~~~~~~~~-~~~~e~ 194 (301)
T 2qnr_A 129 CCFYFISPFGHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE----------RERLKKRILDEIEEHN-IKIYHL 194 (301)
T ss_dssp EEEEEECSSSSSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH----------HHHHHHHHHHHHHHTT-CCCCCC
T ss_pred heeeeecCcccCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH----------HHHHHHHHHHHHHHcC-CeEEec
Confidence 34444442 235666542 23333345789999999999975311 2234578889999998 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++| |++++|..+.+.+.+.
T Consensus 195 Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 195 PDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp C----------CHHHHHHHHTT
T ss_pred CCccc-cccHHHHHHHHHhhcC
Confidence 99999 9999999999988654
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-16 Score=148.52 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=77.4
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.+|||+|++.|...+..++..+|++++|+|+++....+.. .|+..+.. .++| +++|+||+|+.......
T Consensus 78 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~------ 147 (405)
T 2c78_A 78 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ--VGVPYIVVFMNKVDMVDDPELL------ 147 (405)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHH--TTCCCEEEEEECGGGCCCHHHH------
T ss_pred EEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCEEEEEEECccccCcHHHH------
Confidence 4455555577766666778899999999999886544433 35555444 3678 89999999997421100
Q ss_pred CCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCC------------------HHHHHHHHHHHhcCC
Q psy9997 272 KQKPISFEQGEKLAKELKA----VKYVECSALTQKG------------------LKNVFDEAILAALEP 318 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~------------------v~~~f~~l~~~i~~~ 318 (330)
....+++.++++.++. .+++++||++|.| ++++++.+...+-.+
T Consensus 148 ---~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 148 ---DLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp ---HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ---HHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 1123456677777652 6899999999987 778888777665433
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-16 Score=146.63 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=71.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhh---Hhhhhhcchhhhhh-cCCCCc-EEEEEeccCCCCCchhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FENVKEKWVPEITH-HCQKTP-FLLVGTQIDLREDAPTL 265 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~i~~-~~~~~p-iilV~nK~Dl~~~~~~~ 265 (330)
.+.+|||+|++.|...+...+..+|++++|+|+++... |+... ++...+.. ...++| +|+|+||+|+.......
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~-qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGG-QTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCc-hHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 34567777778888777888889999999999987532 22111 11111111 113566 99999999996431100
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHhC-----CeeEEEEeeccCCCHHHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKELK-----AVKYVECSALTQKGLKNVFD 309 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~f~ 309 (330)
.. .....++...+++..+ .++++++||++|.|++++++
T Consensus 175 ~~------~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 175 ER------YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HH------HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 00 1123345566666655 25799999999999999655
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-16 Score=143.48 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=63.0
Q ss_pred cccccCccccCCCEEE-EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH
Q psy9997 203 YDRLRPLSYPQTDVFL-VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG 281 (330)
Q Consensus 203 ~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 281 (330)
+......+++.+++++ +|+|.++..+..+.. .|+..+.. .+.|+++|+||+|+... +....+.+
T Consensus 151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~i~V~NK~Dl~~~------------~~~~~~~~ 215 (299)
T 2aka_B 151 IRDMLMQFVTKENCLILAVSPANSDLANSDAL-KIAKEVDP--QGQRTIGVITKLDLMDE------------GTDARDVL 215 (299)
T ss_dssp HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HHHHHHCT--TCSSEEEEEECGGGSCT------------TCCCHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-HHHHHhCC--CCCeEEEEEEccccCCC------------CchHHHHH
Confidence 4445556777888776 689998765554433 35555443 47899999999999764 21122222
Q ss_pred HHH--HHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 282 EKL--AKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 282 ~~~--~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+.. ....+..+++++||++|.|++++|+.+...
T Consensus 216 ~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 216 ENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp TTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred hCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 110 001122468999999999999999988763
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-16 Score=144.51 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=79.6
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+||++|++.|......+++.+|++++|+|+++....+... .| ..+.. .++| +++|+||+|+......
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l-~~~~~--~~vp~iivviNK~Dl~~~~~~------ 137 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE-HL-LLARQ--IGVEHVVVYVNKADAVQDSEM------ 137 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HH-HHHHH--TTCCCEEEEEECGGGCSCHHH------
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HH-HHHHH--cCCCeEEEEEECcccCCCHHH------
Confidence 446666666777777777888999999999999854444333 22 33333 3678 7899999999752110
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCC----------HHHHHHHHHHHhcCCC
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQKG----------LKNVFDEAILAALEPP 319 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~----------v~~~f~~l~~~i~~~~ 319 (330)
.....++++++++.++. .+++++||++|.| ++++++.+...+-.+.
T Consensus 138 ---~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 138 ---VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp ---HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred ---HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 01223567778777762 5899999999875 8999999888765443
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-16 Score=149.79 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=47.4
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+|||+|++.|......+++.+|++++|+|+++..+.+... .| ..+.. .++|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~-~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LM-EVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HH-HHHHT--TTCCEEEEEECTTSCCS
T ss_pred EEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHH--cCCCEEEEEeCCCCccc
Confidence 3444444666666667788999999999999887777765 34 33333 37899999999999754
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-16 Score=153.29 Aligned_cols=108 Identities=19% Similarity=0.385 Sum_probs=72.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+.+|||+|++.|...+...+..+|++++|+|+++ +++.+.+. .+. ..++|+++|+||+|+....... .
T Consensus 53 i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~-----~~~--~~~vPiIVviNKiDl~~~~~~~--v 123 (501)
T 1zo1_I 53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ-----HAK--AAQVPVVVAVNKIDKPEADPDR--V 123 (501)
T ss_dssp CCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH-----HHH--HTTCCEEEEEECSSSSTTCCCC--T
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH-----HHH--hcCceEEEEEEeccccccCHHH--H
Confidence 4677777778888888888999999999999987 34443332 122 2478999999999997532110 0
Q ss_pred hhCCCCCcCHHHHHHHHHHhC-CeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 269 AKNKQKPISFEQGEKLAKELK-AVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.... ... ..+++.++ .++++++||++|.|++++|+.++..
T Consensus 124 ~~~l-~~~-----~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 124 KNEL-SQY-----GILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TCCC-CCC-----CCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHH-HHh-----hhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 0000 000 00111222 3689999999999999999998764
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-17 Score=140.55 Aligned_cols=173 Identities=19% Similarity=0.149 Sum_probs=103.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-------------EEEEEC-CceeeeeeeecCCCcccccc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-------------VTVMIG-GEPYTLGLFDTAGQEDYDRL 127 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~~~l~i~Dt~g~~~~~~l 127 (330)
...+|+++|++|||||||+++|....+...+.++++..+. ..+.++ +..+.+..||+ ++.++.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHHH
Confidence 3579999999999999999999988776666677765543 333343 44455566665 3343333
Q ss_pred CCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc
Q psy9997 128 RPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR 207 (330)
Q Consensus 128 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~ 207 (330)
. +.+.+.+++ |++|.-.-.
T Consensus 115 ~---~~~~d~~~i-------------------------------------------------------d~~g~i~~~--- 133 (226)
T 2hf9_A 115 N---LDEIDLLFI-------------------------------------------------------ENVGNLICP--- 133 (226)
T ss_dssp C---GGGCSEEEE-------------------------------------------------------ECCSCSSGG---
T ss_pred h---cCCCCEEEE-------------------------------------------------------eCCCCccCc---
Confidence 2 112222222 222210000
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
..+-...+.++.+.|...... ....+... ...|.++|+||+|+... +.+..+++.++++.
T Consensus 134 ~s~~~~~~~~~~v~~~~~~~~---~~~~~~~~-----~~~~~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~ 193 (226)
T 2hf9_A 134 ADFDLGTHKRIVVISTTEGDD---TIEKHPGI-----MKTADLIVINKIDLADA------------VGADIKKMENDAKR 193 (226)
T ss_dssp GGCCCSCSEEEEEEEGGGCTT---TTTTCHHH-----HTTCSEEEEECGGGHHH------------HTCCHHHHHHHHHH
T ss_pred chhhhccCcEEEEEecCcchh---hHhhhhhH-----hhcCCEEEEeccccCch------------hHHHHHHHHHHHHH
Confidence 001112234556666432111 11011111 14688999999999643 33567777777776
Q ss_pred hC-CeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 288 LK-AVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 288 ~~-~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++ ..+++++||++|.|++++|+.+.+.+.+
T Consensus 194 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 194 INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 53 3689999999999999999999887643
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-15 Score=144.63 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=72.9
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|++.|...+..++..+|++++|+|+++....+.. .++..+... ...|+++|+||+|+.......
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~----- 176 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL-GIKHIVVAINKMDLNGFDERV----- 176 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCEEEEEEECTTTTTSCHHH-----
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc-CCCeEEEEEEcCcCCcccHHH-----
Confidence 356778888888877777788999999999999986433322 233333332 234699999999997531100
Q ss_pred CCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHHH
Q psy9997 271 NKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKNV 307 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~~ 307 (330)
.....+++..+++.++ ..+++++||++|.|++++
T Consensus 177 ---~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 ---FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ---HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ---HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 0112356677777765 268999999999999984
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=150.06 Aligned_cols=108 Identities=10% Similarity=0.167 Sum_probs=69.1
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChh---hHhhhhhcchhh--hhhcCCCCcEEEEEeccCCCCCchhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFENVKEKWVPE--ITHHCQKTPFLLVGTQIDLREDAPTL 265 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~--i~~~~~~~piilV~nK~Dl~~~~~~~ 265 (330)
.+.+|||+|++.|...+..+++.+|++++|+|+++.. +|.... ++... +.......|+|+|+||+|+.......
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~-qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG-QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTS-HHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhh-HHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 4567777777888888888899999999999998743 111111 11111 11111234699999999997631100
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLKNV 307 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~ 307 (330)
.....+++..++...+. ++++++||++|.|++++
T Consensus 325 --------~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 --------FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp --------HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred --------HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 01113445555555542 58999999999999876
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-16 Score=146.53 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=67.9
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh---hhHhhhhhcchhhhhhc-CCCCc-EEEEEeccCCCCCchhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP---SSFENVKEKWVPEITHH-CQKTP-FLLVGTQIDLREDAPTL 265 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~-~~~~p-iilV~nK~Dl~~~~~~~ 265 (330)
.+.+||++|++.|...+...+..+|++++|+|+++. .+|+... +|...+... ..++| +|+|+||+|+.......
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~-qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG-QTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTC-CHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCC-cHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 456788888899888888889999999999999986 5666554 444433322 24677 99999999996421000
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHh-C-----CeeEEEEeeccCCCHHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKEL-K-----AVKYVECSALTQKGLKNVF 308 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~-~-----~~~~~e~Sa~~~~~v~~~f 308 (330)
+. .....+++..+++.. + .++++++||++|.|++++|
T Consensus 201 ~~------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ER------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HH------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HH------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 00 012334566777665 3 2679999999999998765
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-16 Score=142.53 Aligned_cols=99 Identities=5% Similarity=-0.028 Sum_probs=65.1
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcE-EEEEe-ccCCCCCchhhHHhhhCCCCCcCH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLVGT-QIDLREDAPTLEKLAKNKQKPISF 278 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilV~n-K~Dl~~~~~~~~~~~~~~~~~v~~ 278 (330)
+.|.......++.+|++++|+| + ...+.... .++..+.. .++|. ++|+| |+|+ .. ...+ ...
T Consensus 71 ~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~-e~~~~~~~--~~i~~~ivvvNNK~Dl-~~-~~~~---------~~~ 134 (370)
T 2elf_A 71 PKTLKSLITALNISDIAVLCIP-P-QGLDAHTG-ECIIALDL--LGFKHGIIALTRSDST-HM-HAID---------ELK 134 (370)
T ss_dssp TTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHH-HHHHHHHH--TTCCEEEEEECCGGGS-CH-HHHH---------HHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHH-HHHHHHHH--cCCCeEEEEEEeccCC-CH-HHHH---------HHH
Confidence 5554444455678999999999 4 33344444 34444433 25777 89999 9999 43 1000 012
Q ss_pred HHHHHHHHHhC--CeeEEE--Eeecc---CCCHHHHHHHHHHHh
Q psy9997 279 EQGEKLAKELK--AVKYVE--CSALT---QKGLKNVFDEAILAA 315 (330)
Q Consensus 279 ~~~~~~~~~~~--~~~~~e--~Sa~~---~~~v~~~f~~l~~~i 315 (330)
++++++++..+ .+++++ +||++ |.|++++++.+...+
T Consensus 135 ~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 135 AKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp HHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 45555655443 368999 99999 999999999988765
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-15 Score=154.79 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=80.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+|||+|++.|...+..++..+|++|+|+|+++....+... ++..+... ++| +|+|+||+|+.......
T Consensus 361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~l----- 431 (1289)
T 3avx_A 361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELL----- 431 (1289)
T ss_dssp EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHH-----
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhH-----
Confidence 456666666888777777888999999999999865444332 44444432 678 89999999997531100
Q ss_pred CCCCCcCHHHHHHHHHHhC----CeeEEEEeeccC--------CCHHHHHHHHHHHhcCC
Q psy9997 271 NKQKPISFEQGEKLAKELK----AVKYVECSALTQ--------KGLKNVFDEAILAALEP 318 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~--------~~v~~~f~~l~~~i~~~ 318 (330)
....+++..+++.++ .++++++||++| .|++++|+.+...+-.+
T Consensus 432 ----e~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 432 ----ELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp ----HHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred ----HHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 112356777777765 268999999999 46899999888766443
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-15 Score=132.45 Aligned_cols=129 Identities=20% Similarity=0.297 Sum_probs=85.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
.++..+||+++|+.|+|||||+++|++..+ ...+.++........+..++ ..+.+|||||++.+..+...+
T Consensus 32 ~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~----- 104 (262)
T 3def_A 32 KDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQA----- 104 (262)
T ss_dssp TTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHH-----
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHH-----
Confidence 346789999999999999999999999874 34444444333333444444 478899999996554332111
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc-cccCCC
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL-SYPQTD 215 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~-~~~~~d 215 (330)
++.++.. ....+|
T Consensus 105 ------------------------------------------------------------------~~~i~~~l~~~~~~ 118 (262)
T 3def_A 105 ------------------------------------------------------------------LELIKGFLVNRTID 118 (262)
T ss_dssp ------------------------------------------------------------------HHHHHHHTTTCEEC
T ss_pred ------------------------------------------------------------------HHHHHHHHhcCCCC
Confidence 1111111 123689
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCC---CCcEEEEEeccCCCCC
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQ---KTPFLLVGTQIDLRED 261 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilV~nK~Dl~~~ 261 (330)
++++|++++... +......|+..+..... ..|+++|+||+|+...
T Consensus 119 ~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 119 VLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred EEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 999999998765 55443367777776542 2499999999999643
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-15 Score=126.85 Aligned_cols=120 Identities=29% Similarity=0.482 Sum_probs=92.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|..+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------ 86 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP------------------ 86 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH------------------
Confidence 46799999999999999999999999999999999999998888889999999999988721
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccc-cC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK-LG 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~-~~ 159 (330)
++ ..++..|++++|++++|||.... ..... +.
T Consensus 87 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 119 (214)
T 3q3j_B 87 ------YY------------------------------------DNVRPLCYSDSDAVLLCFDISRP-----ETVDSALK 119 (214)
T ss_dssp ------GG------------------------------------TTTGGGGCTTCSEEEEEEETTCT-----HHHHHHHT
T ss_pred ------hH------------------------------------HHHHHHHcCCCeEEEEEEECcCH-----HHHHHHHH
Confidence 11 34567789999999999985431 11222 45
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+... .+..|+.++|||.|+..
T Consensus 120 ~~~~~i~~~-~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 120 KWRTEILDY-CPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp HHHHHHHHH-CTTSEEEEEEECGGGGG
T ss_pred HHHHHHHHh-CCCCCEEEEEEChhhcc
Confidence 666555443 36788999999999853
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-15 Score=143.39 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=68.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCCh---hhHhh---hhhcchhhhhhcCCCCc-EEEEEeccCCCCCchh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP---SSFEN---VKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPT 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~---~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~ 264 (330)
+.+|||+|++.|......++..+|++++|+|+++. .+|+. .. .++..+.. .++| +++|+||+|+......
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~--~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFT--LGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHH--TTCCEEEEEEECGGGGTTCHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHH--cCCCeEEEEEEccccccCCHH
Confidence 44566666677777777788899999999999975 34431 11 11222222 3565 9999999999742110
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHHHH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLKNV 307 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~ 307 (330)
. .....+++..+++.++. ++++++||++|.|++++
T Consensus 164 ~--------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 164 R--------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp H--------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred H--------HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 0 01234566777777763 68999999999998743
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-15 Score=140.43 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=55.5
Q ss_pred ccCccccCCCEEEEEEEcCCh-hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH--HHHH
Q psy9997 206 LRPLSYPQTDVFLVCFSVVSP-SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF--EQGE 282 (330)
Q Consensus 206 ~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~ 282 (330)
+...++.++++.+++|++... .++..+...|+..+. .++|+|+|+||+|+... +++.. +++.
T Consensus 129 IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~------------~ev~~~k~~i~ 193 (418)
T 2qag_C 129 VNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTP------------EECQQFKKQIM 193 (418)
T ss_dssp -CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCH------------HHHHHHHHHHH
T ss_pred HHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccH------------HHHHHHHHHHH
Confidence 445577788888888888764 577766545777664 37999999999999754 33333 6788
Q ss_pred HHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 283 KLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 283 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+++..++ ++++++||+++.+++++|..+...+
T Consensus 194 ~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 194 KEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHT-CCCCCCC-----------------C
T ss_pred HHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 8888887 7999999999999999888876643
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=121.86 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=91.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.+|+.+.|...+.+|+++.+...+.+++..+.+.+||+++..++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 82 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP---------------- 82 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcc----------------
Confidence 3679999999999999999999999999999999999888888889999999999998872211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.+ ..|++++|++++|||.... .....+..
T Consensus 83 --------------------------------------------~~~-~~~~~~~~~~ilv~d~~~~-----~s~~~~~~ 112 (187)
T 3c5c_A 83 --------------------------------------------RNC-ERYLNWAHAFLVVYSVDSR-----QSFDSSSS 112 (187)
T ss_dssp --------------------------------------------CCT-HHHHTTCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------hhH-HHHHhhCCEEEEEEECCCH-----HHHHHHHH
Confidence 111 2478899999999985421 12233445
Q ss_pred cceeeeccC---CCcccccccceeeccC
Q psy9997 161 WFWFISTEH---SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~---~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++|+|.|+.
T Consensus 113 ~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 113 YLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred HHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 665554432 2577899999999984
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=122.34 Aligned_cols=119 Identities=39% Similarity=0.746 Sum_probs=91.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.||+++.+...+.+++..+.+.+||+++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE------------------- 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 5799999999999999999999999999999999999988888899999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
++ ..++..|++++|++++|||.... .....+ ..
T Consensus 69 -----~~------------------------------------~~~~~~~~~~~d~~ilv~d~~~~-----~s~~~~~~~ 102 (212)
T 2j0v_A 69 -----DY------------------------------------SRLRPLSYRGADIFVLAFSLISK-----ASYENVLKK 102 (212)
T ss_dssp -----CC------------------------------------CC--CGGGTTCSEEEEEEETTCH-----HHHHHHHHT
T ss_pred -----HH------------------------------------HHHHHhhccCCCEEEEEEECCCH-----HHHHHHHHH
Confidence 11 33456789999999999984421 111222 25
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.++|||.|+..
T Consensus 103 ~~~~~~~~-~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 103 WMPELRRF-APNVPIVLVGTKLDLRD 127 (212)
T ss_dssp HHHHHHHH-CTTCCEEEEEECHHHHT
T ss_pred HHHHHHHh-CCCCCEEEEEeCHHhhh
Confidence 65555443 34788999999999853
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-15 Score=145.18 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=55.2
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhh--hhc---chhhhhhcCCCCc-EEEEEeccCCCCCchhhH
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV--KEK---WVPEITHHCQKTP-FLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~--~~~---~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~ 266 (330)
.+|||+|++.|...+...+..+|+++||+|+++..++..+ ..+ .+..+.. .++| +|+|+||+|+.......
T Consensus 258 ~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~~~~- 334 (592)
T 3mca_A 258 EIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWSEDR- 334 (592)
T ss_dssp -CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTCHHH-
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccccHHH-
Confidence 4455555577777777788889999999999864321111 001 1111111 2555 99999999997531100
Q ss_pred HhhhCCCCCcCHHHHHHHH-HHhCC----eeEEEEeeccCCCHH
Q psy9997 267 KLAKNKQKPISFEQGEKLA-KELKA----VKYVECSALTQKGLK 305 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~e~Sa~~~~~v~ 305 (330)
.....+++..+. +..+. ++++++||++|.|++
T Consensus 335 -------~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 335 -------FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp -------HHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred -------HHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 011123344444 33342 479999999999998
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=118.48 Aligned_cols=119 Identities=51% Similarity=0.876 Sum_probs=92.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------------- 65 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------------- 65 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG-----------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHh-----------------
Confidence 789999999999999999999999999999999999988888889999999999999887211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG- 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~- 159 (330)
+ ..++..+++++|++++|||..... ....+.
T Consensus 66 -------~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 97 (186)
T 1mh1_A 66 -------Y------------------------------------DRLRPLSYPQTDVSLICFSLVSPA-----SFENVRA 97 (186)
T ss_dssp -------G------------------------------------TTTGGGGCTTCSEEEEEEETTCHH-----HHHHHHH
T ss_pred -------H------------------------------------HHHHHHhccCCcEEEEEEECCChh-----hHHHHHH
Confidence 1 234566899999999999854311 111222
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+... .+..|+.+++||.|+.
T Consensus 98 ~~~~~~~~~-~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 98 KWYPEVRHH-CPNTPIILVGTKLDLR 122 (186)
T ss_dssp THHHHHHHH-STTSCEEEEEECHHHH
T ss_pred HHHHHHHHh-CCCCCEEEEeEccccc
Confidence 455444432 2477889999999984
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=127.61 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=82.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|++..+. ..+.++... .....++.....+.+|||||.+.+..+..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~l~iiDTpG~~~~~~~~~--------- 105 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR--PVMVSRSRAGFTLNIIDTPGLIEGGYIND--------- 105 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS--CEEEEEEETTEEEEEEECCCSEETTEECH---------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee--eEEEEEeeCCeEEEEEECCCCCCCccchH---------
Confidence 45799999999999999999999988753 222222211 22333444566789999999854332210
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~ 217 (330)
.....+. ....+.+|++
T Consensus 106 --------------------------------------------------------------~~~~~i~~~~~~~~~d~i 123 (270)
T 1h65_A 106 --------------------------------------------------------------MALNIIKSFLLDKTIDVL 123 (270)
T ss_dssp --------------------------------------------------------------HHHHHHHHHTTTCEECEE
T ss_pred --------------------------------------------------------------HHHHHHHHHhhcCCCCEE
Confidence 0000010 0124578999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCC-C--CcEEEEEeccCCCCC
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQ-K--TPFLLVGTQIDLRED 261 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilV~nK~Dl~~~ 261 (330)
++|+|++.. ++......|+..+...+. + .|+++|+||+|+...
T Consensus 124 l~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 124 LYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp EEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred EEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 999999764 455444367877766543 2 799999999999754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=117.54 Aligned_cols=122 Identities=13% Similarity=0.211 Sum_probs=92.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|.+..+...+.+++..+.+.+||+++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------------- 64 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ-------------------- 64 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCc--------------------
Confidence 468999999999999999999999999999999999888888899999999999998871
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.+ ..++..|++++|++++|||.... .....+..|
T Consensus 65 ----~~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 99 (181)
T 3t5g_A 65 ----DEY------------------------------------SIFPQTYSIDINGYILVYSVTSI-----KSFEVIKVI 99 (181)
T ss_dssp ----CTT------------------------------------CCCCGGGTTTCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred ----hhh------------------------------------hHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 111 33466789999999999985431 122234445
Q ss_pred ceeeec-cCCCcccccccceeeccCCCc
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~~~ 188 (330)
+..+.. ...+..|+.++|+|.|+...+
T Consensus 100 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 100 HGKLLDMVGKVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp HHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhcc
Confidence 554433 234577899999999985433
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-14 Score=118.08 Aligned_cols=118 Identities=34% Similarity=0.551 Sum_probs=91.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.||++..+...+.+++..+.+.+||+++..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP------------------- 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG-------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCCh-------------------
Confidence 4789999999999999999999999999999999998888888889999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
.+ ..++..+++++|++++|||.... . ....+ ..
T Consensus 67 -----~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~--~---s~~~~~~~ 100 (184)
T 1m7b_A 67 -----YY------------------------------------DNVRPLSYPDSDAVLICFDISRP--E---TLDSVLKK 100 (184)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--H---HHHHHHHT
T ss_pred -----hh------------------------------------hhhHHhhcCCCcEEEEEEECCCH--H---HHHHHHHH
Confidence 11 33456789999999999985431 1 11222 45
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .+..|+.++|+|.|+.
T Consensus 101 ~~~~i~~~-~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 101 WKGEIQEF-CPNTKMLLVGCKSDLR 124 (184)
T ss_dssp HHHHHHHH-CTTCEEEEEEECGGGG
T ss_pred HHHHHHHH-CCCCCEEEEEEcchhh
Confidence 55444332 3578899999999985
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-14 Score=119.93 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=88.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.+|+.+.|...+.+| .+.+.+.+.+++..+.+++||+++...++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------------- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH---------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh---------------
Confidence 67899999999999999999999999999999998 55677889999999999999988722111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
|++++|++++|||.... .....+..
T Consensus 82 --------------------------------------------------~~~~~~~~i~v~d~~~~-----~s~~~~~~ 106 (184)
T 3ihw_A 82 --------------------------------------------------FAAWVDAVVFVFSLEDE-----ISFQTVYN 106 (184)
T ss_dssp --------------------------------------------------HHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------------eecCCCEEEEEEECcCH-----HHHHHHHH
Confidence 46779999999984431 12233344
Q ss_pred cceeeeccC-CCcccccccceeeccC
Q psy9997 161 WFWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++|+|.|+.
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 107 YFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp HHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred HHHHHHHhcCCCCCCEEEEEECcccc
Confidence 666655543 2677889999999983
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-14 Score=117.98 Aligned_cols=119 Identities=36% Similarity=0.626 Sum_probs=93.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE------------------- 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 4699999999999999999999999999999999999998888999999999999988711
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
.+ ..++..+++++|++++|||.... .....+ ..
T Consensus 83 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 116 (194)
T 3reg_A 83 -----EY------------------------------------DRLRPLSYADSDVVLLCFAVNNR-----TSFDNISTK 116 (194)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH-----HHHHHHHHT
T ss_pred -----HH------------------------------------HHHhHhhccCCcEEEEEEECCCH-----HHHHHHHHH
Confidence 11 34567789999999999984432 111222 45
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|...+.. ..+..|+.++|+|.|+..
T Consensus 117 ~~~~~~~-~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 117 WEPEIKH-YIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp HHHHHHH-HCTTSEEEEEEECGGGCC
T ss_pred HHHHHHH-hCCCCCEEEEEEChhhcc
Confidence 5554443 345788999999999853
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-14 Score=143.41 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=78.5
Q ss_pred ccccccccccccc---ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHH
Q psy9997 191 DRSLFDTAGQEDY---DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEK 267 (330)
Q Consensus 191 ~~~~~D~~g~e~~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~ 267 (330)
.+.+|||||.... ......+++++|++++|+|.+++.+..+.. .|...+... +.|+++|+||+|+......
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~--- 248 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENYIKGR--GLTVFFLVNAWDQVRESLI--- 248 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHHTTTS--CCCEEEEEECGGGGGGGCS---
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHHHHhh--CCCEEEEEECccccccccc---
Confidence 5788999997763 344556788999999999999988888776 555455432 6789999999999653100
Q ss_pred hhhCCCCCc-CHH----HHHH-----HHHHhC-------CeeEEEEeec--------------cCCCHHHHHHHHHHHhc
Q psy9997 268 LAKNKQKPI-SFE----QGEK-----LAKELK-------AVKYVECSAL--------------TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 268 ~~~~~~~~v-~~~----~~~~-----~~~~~~-------~~~~~e~Sa~--------------~~~~v~~~f~~l~~~i~ 316 (330)
..... ..+ .... +....+ ..+++++||+ ++.|+++++..+...+.
T Consensus 249 ----~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 249 ----DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp ----STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ----ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 00000 000 1111 111111 1469999999 99999999999887764
Q ss_pred C
Q psy9997 317 E 317 (330)
Q Consensus 317 ~ 317 (330)
+
T Consensus 325 ~ 325 (695)
T 2j69_A 325 R 325 (695)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-14 Score=140.13 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=48.5
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
...+|||+|++.|......+++.+|++++|+|.++........ ++..+.. .++|+++|+||+|+.
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~--~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHH--TTCCEEEEEECGGGC
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHH--HHHHHHH--ccCCEEEEecCCchh
Confidence 3456777777887777777888999999999988765544432 4444443 379999999999997
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-14 Score=117.94 Aligned_cols=118 Identities=41% Similarity=0.776 Sum_probs=84.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 78 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ-------------------- 78 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCS--------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC--------------------
Confidence 578999999999999999999999999999999999888888899999999999998872
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
+++ ..++..+++++|++++|||.... .....+ ..
T Consensus 79 ----~~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 113 (201)
T 2q3h_A 79 ----DEF------------------------------------DKLRPLCYTNTDIFLLCFSVVSP-----SSFQNVSEK 113 (201)
T ss_dssp ----TTC------------------------------------SSSGGGGGTTCSEEEEEEETTCH-----HHHHHHHHT
T ss_pred ----HHH------------------------------------HHHhHhhcCCCcEEEEEEECCCH-----HHHHHHHHH
Confidence 111 33456789999999999985432 111222 25
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .+..|+.++|||.|+.
T Consensus 114 ~~~~~~~~-~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 114 WVPEIRCH-CPKAPIILVGTQSDLR 137 (201)
T ss_dssp HHHHHHHH-CSSSCEEEEEECGGGG
T ss_pred HHHHHHHh-CCCCCEEEEEECHhhh
Confidence 55544433 3478889999999984
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-14 Score=117.07 Aligned_cols=120 Identities=21% Similarity=0.296 Sum_probs=92.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||++++..+.+...+.+|++..+...+.+++..+.+.+||+++.
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 61 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT------------------- 61 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCCh-------------------
Confidence 8999999999999999999999999999999999999888888888999999999998861
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.++ ..++..+++++|++++|||.... .....+..
T Consensus 62 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 95 (167)
T 1c1y_A 62 -----EQF------------------------------------TAMRDLYMKNGQGFALVYSITAQ-----STFNDLQD 95 (167)
T ss_dssp -----CSS------------------------------------TTHHHHHHHHCSEEEEEEETTCH-----HHHHTHHH
T ss_pred -----HHH------------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 111 23455678899999999974432 11223334
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... ..+..|+.+++||.|+.
T Consensus 96 ~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 96 LREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp HHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHhhCcCCCcEEEEEECcccc
Confidence 54444332 34577889999999984
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=119.86 Aligned_cols=118 Identities=22% Similarity=0.320 Sum_probs=92.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ .+.+.+++..+.+.+||+++..++
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------------- 88 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF----------------- 88 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 58999999999999999999999999999999998555 668889999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 89 -------------------------------------------~~~~~~~~~~~d~~i~v~D~~~~-----~s~~~~~~~ 120 (201)
T 2ew1_A 89 -------------------------------------------RSITQSYYRSANALILTYDITCE-----ESFRCLPEW 120 (201)
T ss_dssp -------------------------------------------HHHHGGGSTTCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456789999999999985432 122234456
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++.++|||.|+.
T Consensus 121 ~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 121 LREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHhcCCCCCEEEEEECCCCc
Confidence 666555555678889999999984
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=119.40 Aligned_cols=118 Identities=34% Similarity=0.551 Sum_probs=91.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+...+.+++..+.+.+||+++..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------- 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP------------------- 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG-------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH-------------------
Confidence 3689999999999999999999999999999999998887788888999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
.+ ..++..+++++|++++|||.... . ....+ ..
T Consensus 88 -----~~------------------------------------~~~~~~~~~~~d~~ilv~D~~~~--~---s~~~~~~~ 121 (205)
T 1gwn_A 88 -----YY------------------------------------DNVRPLSYPDSDAVLICFDISRP--E---TLDSVLKK 121 (205)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--H---HHHHHHHT
T ss_pred -----hh------------------------------------hHHHHhhccCCCEEEEEEECCCH--H---HHHHHHHH
Confidence 11 23456689999999999985432 1 11222 45
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .+..|+.++|||.|+.
T Consensus 122 ~~~~i~~~-~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 122 WKGEIQEF-CPNTKMLLVGCKSDLR 145 (205)
T ss_dssp HHHHHHHH-CTTCEEEEEEECGGGG
T ss_pred HHHHHHHH-CCCCCEEEEEechhhc
Confidence 55544332 3578899999999985
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-14 Score=132.14 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH
Q psy9997 204 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE 282 (330)
Q Consensus 204 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 282 (330)
..+...+++++|++++|+|.++...... .|+..+.... .+.|+++|+||+|+... +....+.+.
T Consensus 163 ~~~~~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~Dl~~~------------~~~~~~~~~ 227 (360)
T 3t34_A 163 ENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKIDLMDK------------GTDAVEILE 227 (360)
T ss_dssp HHHHHHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECGGGCCT------------TCCSHHHHT
T ss_pred HHHHHHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCCccCCC------------cccHHHHHc
Confidence 4556667889999999998865443321 3444444433 36899999999999764 334445555
Q ss_pred HHHHHhCCeeEEEEeeccCCCHHHHHHH
Q psy9997 283 KLAKELKAVKYVECSALTQKGLKNVFDE 310 (330)
Q Consensus 283 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 310 (330)
.++..++ .+|+++|++++.++++.+..
T Consensus 228 ~~~~~~~-~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 228 GRSFKLK-YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp TSSSCCS-SCCEEECCCCHHHHHTTCCH
T ss_pred Ccccccc-CCeEEEEECChHHhccCCCH
Confidence 5555555 68999999999888776544
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-14 Score=118.51 Aligned_cols=119 Identities=18% Similarity=0.348 Sum_probs=72.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.||++..+ ...+.+++..+.+.+||+++...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 70 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------------- 70 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh-----------------
Confidence 58999999999999999999999999888899998655 568888999999999998862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... . ....+..|
T Consensus 71 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~~ 102 (183)
T 2fu5_C 71 -------------------------------------------RTITTAYYRGAMGIMLVYDITNE--K---SFDNIRNW 102 (183)
T ss_dssp ----------------------------------------------CCTTTTTCSEEEEEEETTCH--H---HHHHHHHH
T ss_pred -------------------------------------------hhhHHHHHhcCCEEEEEEECcCH--H---HHHHHHHH
Confidence 23456789999999999985432 1 12344457
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+.++|||.|+..
T Consensus 103 ~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 103 IRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp HHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred HHHHHHhcCCCCCEEEEEECccCCc
Confidence 6666555556789999999999854
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-14 Score=131.23 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=71.7
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
.+.++.++.++|++ ...+.++. .|..++.... ...|.++|+||+|+... ...++..++.+.
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------------~~~~~l~~~l~~ 296 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE--------------EAVKALADALAR 296 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------------HHHHHHHHHHHT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH--------------HHHHHHHHHHHh
Confidence 34689999999998 77777776 7777766654 36899999999999642 122344455555
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+ .+++++||+++.|++++++.+...+.+.+.
T Consensus 297 ~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 297 EG-LAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp TT-SCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred cC-CeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 55 689999999999999999999999976654
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=116.33 Aligned_cols=119 Identities=49% Similarity=0.888 Sum_probs=91.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~------------------- 77 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE------------------- 77 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCc-------------------
Confidence 3589999999999999999999999999999999998888888889999999999888621
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-C
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG-G 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-~ 160 (330)
++ ..++..|++++|++++|||.... .+ ...+. .
T Consensus 78 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 111 (194)
T 2atx_A 78 -----DY------------------------------------DRLRPLSYPMTDVFLICFSVVNP--AS---FQNVKEE 111 (194)
T ss_dssp -----SS------------------------------------TTTGGGGCTTCSEEEEEEETTCH--HH---HHHHHHT
T ss_pred -----ch------------------------------------hHHHHHhcCCCCEEEEEEECCCH--HH---HHHHHHH
Confidence 11 33566789999999999984432 11 11222 4
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.++|+|.|+..
T Consensus 112 ~~~~~~~~-~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 112 WVPELKEY-APNVPFLLIGTQIDLRD 136 (194)
T ss_dssp HHHHHHHH-STTCCEEEEEECTTSTT
T ss_pred HHHHHHHh-CCCCCEEEEEEChhhcc
Confidence 55444432 34778999999999853
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-14 Score=119.05 Aligned_cols=120 Identities=53% Similarity=0.919 Sum_probs=90.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.+|..+.+...+.+|+++.+...+.+++..+.+.+||+++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------ 89 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE------------------ 89 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG------------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCch------------------
Confidence 46799999999999999999999999999999999998888888999999999999988721
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-C
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-G 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~ 159 (330)
.+ ..++..+++++|++++|||.... .+ ...+ .
T Consensus 90 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~ 122 (204)
T 4gzl_A 90 ------DY------------------------------------DRLRPLSYPQTDVFLICFSLVSP--AS---FENVRA 122 (204)
T ss_dssp ------GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--HH---HHHHHH
T ss_pred ------hh------------------------------------HHHHHHHhccCCEEEEEEECCCH--HH---HHHHHH
Confidence 11 34566789999999999984431 11 1222 2
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+.... +..|+.++|||.|+..
T Consensus 123 ~~~~~~~~~~-~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 123 KWYPEVRHHC-PNTPIILVGTKLDLRD 148 (204)
T ss_dssp THHHHHHHHC-SSCCEEEEEECHHHHT
T ss_pred HHHHHHHHhC-CCCCEEEEEechhhcc
Confidence 5555544433 6788999999999853
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-14 Score=114.37 Aligned_cols=119 Identities=22% Similarity=0.380 Sum_probs=89.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+++||+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 68 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF---------------- 68 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh----------------
Confidence 478999999999999999999999999999999998666 567888899999999998872211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 69 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 99 (170)
T 1z08_A 69 --------------------------------------------HALGPIYYRDSNGAILVYDITDE-----DSFQKVKN 99 (170)
T ss_dssp ------------------------------------------------CCSSTTCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------hhhHHHHhccCCEEEEEEECcCH-----HHHHHHHH
Confidence 23455688999999999985432 12233445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++++|.|+.
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccc
Confidence 6555544444567889999999984
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=115.53 Aligned_cols=119 Identities=16% Similarity=0.333 Sum_probs=93.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G--------------------- 66 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG--------------------- 66 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTT---------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCC---------------------
Confidence 58999999999999999999999999999999998666 56888999999999999886
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++ ..++..+++++|++++|||..... ....+..|
T Consensus 67 ---~~~~------------------------------------~~~~~~~~~~~d~vilv~d~~~~~-----s~~~~~~~ 102 (206)
T 2bcg_Y 67 ---QERF------------------------------------RTITSSYYRGSHGIIIVYDVTDQE-----SFNGVKMW 102 (206)
T ss_dssp ---TTTT------------------------------------TCCCGGGGTTCSEEEEEEETTCHH-----HHHHHHHH
T ss_pred ---hHHH------------------------------------HHHHHHhccCCCEEEEEEECcCHH-----HHHHHHHH
Confidence 1111 334667899999999999854321 12334456
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+.++++|.|+..
T Consensus 103 ~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 103 LQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHhcCCCCCEEEEEECCCCcc
Confidence 6666555556788899999999854
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-14 Score=116.02 Aligned_cols=121 Identities=22% Similarity=0.308 Sum_probs=94.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++++||+++|++|||||||+++|..+.|...+.+|+...+.....+++..+.+.+||+++..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------ 77 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE------------------ 77 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCch------------------
Confidence 36799999999999999999999999999999999998888889999999999999988611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..++..+++++|++++|||.... .....+..
T Consensus 78 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 110 (183)
T 3kkq_A 78 ------EF------------------------------------SAMREQYMRTGDGFLIVYSVTDK-----ASFEHVDR 110 (183)
T ss_dssp ------GG------------------------------------CSSHHHHHHHCSEEEEEEETTCH-----HHHHTHHH
T ss_pred ------hh------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHH
Confidence 11 23455678899999999985432 11233445
Q ss_pred cceeeec-cCCCcccccccceeeccCC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+.. ...+..|+.++|+|.|+..
T Consensus 111 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 111 FHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 5555533 3456778899999999853
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-14 Score=118.76 Aligned_cols=119 Identities=33% Similarity=0.639 Sum_probs=77.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++...+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------------- 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY----------------- 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 579999999999999999999999999999999999888888899999999999998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
..++..|++++|++++|||.... .+ ...+ ..
T Consensus 96 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 127 (214)
T 2j1l_A 96 -------------------------------------------DRLRPLFYPDASVLLLCFDVTSP--NS---FDNIFNR 127 (214)
T ss_dssp ----------------------------------------------------CEEEEEEEEETTCH--HH---HHHHHHT
T ss_pred -------------------------------------------hHHHHHHhccCCEEEEEEECcCH--HH---HHHHHHH
Confidence 23455688999999999985431 11 1222 25
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.++|+|.|+..
T Consensus 128 ~~~~~~~~-~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 128 WYPEVNHF-CKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp HHHHHHHH-CSSCCEEEEEECGGGGS
T ss_pred HHHHHHHh-CCCCCEEEEEEChhhhc
Confidence 55544332 35678999999999853
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-14 Score=115.48 Aligned_cols=121 Identities=26% Similarity=0.360 Sum_probs=93.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+++|..+.|...+.+|++..+...+.+++..+.+.+||+++.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------- 67 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ------------------- 67 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 3579999999999999999999999999999999999888888899999999999998871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.++ ..++..+++++|++++|||.... .....+..
T Consensus 68 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 101 (181)
T 2fn4_A 68 -----EEF------------------------------------GAMREQYMRAGHGFLLVFAINDR-----QSFNEVGK 101 (181)
T ss_dssp -----TTT------------------------------------SCCHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----hhh------------------------------------HHHHHHHHhhCCEEEEEEeCCCH-----HHHHHHHH
Confidence 111 23455678899999999984431 11223445
Q ss_pred cceeeec-cCCCcccccccceeeccCC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+.. ......|+.++++|.|+..
T Consensus 102 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 102 LFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 5555422 3345678999999999853
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-14 Score=119.60 Aligned_cols=108 Identities=19% Similarity=0.062 Sum_probs=70.7
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
.++.+||++|+-.... .+...++.+++|+|+++... ... .+... .+.|+++|+||+|+...
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~-~~~~~-----~~~~~iiv~NK~Dl~~~-------- 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVE-KHPEI-----FRVADLIVINKVALAEA-------- 169 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHH-HCHHH-----HHTCSEEEEECGGGHHH--------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhh-hhhhh-----hhcCCEEEEecccCCcc--------
Confidence 3556888888611111 11125688999999986532 111 12211 25789999999999642
Q ss_pred hCCCCCcCHHHHHHHHHHhC-CeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 270 KNKQKPISFEQGEKLAKELK-AVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+....+++.++++..+ ..+++++||++|.|++++|+.+...+.+...
T Consensus 170 ----~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 170 ----VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp ----HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred ----hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2345666767766653 3689999999999999999999998876543
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=116.55 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=88.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G--------------------- 81 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG--------------------- 81 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECC---------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCC---------------------
Confidence 57999999999999999999999999999999999988877888888899999999886
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+.+ ..++..+++++|++++|||.... .....+..|
T Consensus 82 ---~~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 117 (201)
T 3oes_A 82 ---QDEY------------------------------------SILPYSFIIGVHGYVLVYSVTSL-----HSFQVIESL 117 (201)
T ss_dssp ---CCTT------------------------------------CCCCGGGTTTCCEEEEEEETTCH-----HHHHHHHHH
T ss_pred ---ccch------------------------------------HHHHHHHHhcCCEEEEEEeCCCH-----HHHHHHHHH
Confidence 1111 33466789999999999985431 122334455
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 118 ~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 118 YQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp HHHHHC-----CCCEEEEEECTTCGG
T ss_pred HHHHHHhcCCCCCCEEEEEECccCcc
Confidence 5544332 345678999999999853
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.8e-14 Score=114.73 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=89.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCC-CCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.+||+++|++|||||||+.+|..+.+. ..+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------------- 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF--------------- 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH---------------
Confidence 4789999999999999999999999995 46788888666 456688999999999998872211
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..++..+++++|++++|||..... ....+.
T Consensus 74 ---------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~ 103 (180)
T 2g6b_A 74 ---------------------------------------------RSVTHAYYRDAHALLLLYDVTNKA-----SFDNIQ 103 (180)
T ss_dssp --------------------------------------------------CCGGGCSEEEEEEETTCHH-----HHHTHH
T ss_pred ---------------------------------------------HHHHHHHccCCCEEEEEEECCCHH-----HHHHHH
Confidence 233556789999999999854321 123344
Q ss_pred CcceeeeccCCCcccccccceeeccCCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
.|+..+........|+.+++||.|+...
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 5666555544567889999999999643
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-14 Score=113.71 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=93.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++.+||+++|++|||||||+.+|..+.+...+.+|++..+ ...+.+++..+.+.+||+++...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------------- 67 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER---------------- 67 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------------
Confidence 3689999999999999999999999999999999998666 66888899999999999886211
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ ..++..+++++|++++|||..... ....+.
T Consensus 68 ------------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~ 98 (170)
T 1r2q_A 68 ------------Y--------------------------------HSLAPMYYRGAQAAIVVYDITNEE-----SFARAK 98 (170)
T ss_dssp ------------G--------------------------------GGGHHHHHTTCSEEEEEEETTCHH-----HHHHHH
T ss_pred ------------h--------------------------------hhhhHHhccCCCEEEEEEECCCHH-----HHHHHH
Confidence 1 234556789999999999854321 123344
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.....+..++.++|+|.|+.
T Consensus 99 ~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 99 NWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCc
Confidence 56666655556788899999999984
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-14 Score=119.91 Aligned_cols=119 Identities=17% Similarity=0.237 Sum_probs=84.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++..++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 91 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---------------- 91 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH----------------
Confidence 368999999999999999999999999999999998655 678889999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|++++|++++|||.... .....+..
T Consensus 92 --------------------------------------------~~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~~ 122 (201)
T 2hup_A 92 --------------------------------------------RTITQSYYRSANGAILAYDITKR-----SSFLSVPH 122 (201)
T ss_dssp --------------------------------------------HHHHHHHHTTCSEEEEEEETTBH-----HHHHTHHH
T ss_pred --------------------------------------------HHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHH
Confidence 23456688999999999985432 11234446
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++|||.|+.
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHHhcCCCCCEEEEEECCccc
Confidence 6666655555778899999999985
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=113.36 Aligned_cols=120 Identities=16% Similarity=0.339 Sum_probs=94.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++.+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++....+.+||+++..
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------------- 66 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE----------------- 66 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch-----------------
Confidence 3679999999999999999999999999999999998666 6688889999999999988721
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ + ..+...+++++|++++|||.... .....+.
T Consensus 67 -------~----~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~ 98 (170)
T 1z0j_A 67 -------R----F--------------------------------RALAPMYYRGSAAAIIVYDITKE-----ETFSTLK 98 (170)
T ss_dssp -------G----G--------------------------------GGGTHHHHTTCSEEEEEEETTCH-----HHHHHHH
T ss_pred -------h----h--------------------------------hcccHhhCcCCCEEEEEEECcCH-----HHHHHHH
Confidence 1 1 33456688999999999985432 1223345
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.....+..++.++|+|.|+.
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 99 NWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp HHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred HHHHHHHHhCCCCCcEEEEEECCccc
Confidence 56666666666788899999999984
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-14 Score=114.53 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=92.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.++..+.+...+.+|.+..+...+.+++..+.+.+||+++...+
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------------- 65 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---------------- 65 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------------
Confidence 7899999999999999999999999999999999999888888889999999999998862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|++++|++++|||.... .....+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 96 (168)
T 1u8z_A 66 --------------------------------------------AAIRDNYFRSGEGFLCVFSITEM-----ESFAATAD 96 (168)
T ss_dssp --------------------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------HHHHHHHhhcCCEEEEEEECCCH-----HHHHHHHH
Confidence 23455678899999999985432 11223344
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccc
Confidence 55544443 23567889999999984
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-14 Score=114.74 Aligned_cols=120 Identities=20% Similarity=0.279 Sum_probs=92.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc-ceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+.+||+++|++|||||||+++++.+.|...+.+|++. .+...+.+++..+.+.+||+++...
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~---------------- 75 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------------- 75 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH----------------
Confidence 57899999999999999999999999999999999974 4477888999999999999886111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ ..+...+++++|++++|||.... .....+.
T Consensus 76 --------~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~ 106 (179)
T 2y8e_A 76 --------F------------------------------------RSLIPSYIRDSTVAVVVYDITNT-----NSFHQTS 106 (179)
T ss_dssp --------G------------------------------------GGGSHHHHHTCSEEEEEEETTCH-----HHHHTHH
T ss_pred --------H------------------------------------HHHHHHHhcCCCEEEEEEECCCH-----HHHHHHH
Confidence 1 23455678899999999985431 1123345
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.....+..|+.++++|.|+.
T Consensus 107 ~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 107 KWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp HHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECCccc
Confidence 56655555445678889999999984
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=114.90 Aligned_cols=119 Identities=39% Similarity=0.678 Sum_probs=84.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 83 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ------------------- 83 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTC-------------------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4678999999999999999999999999999999999888777889999999999998871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-C
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-G 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~ 159 (330)
+.+ ..++..+++++|++++|||.... . ....+ .
T Consensus 84 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~ 117 (207)
T 2fv8_A 84 -----EDY------------------------------------DRLRPLSYPDTDVILMCFSVDSP--D---SLENIPE 117 (207)
T ss_dssp -----TTC------------------------------------TTTGGGGCTTCCEEEEEEETTCH--H---HHHHHHH
T ss_pred -----HHH------------------------------------HHHHHhhcCCCCEEEEEEECCCH--H---HHHHHHH
Confidence 111 23456789999999999984431 1 11122 3
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.. ..+..|+.+++||.|+.
T Consensus 118 ~~~~~~~~-~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 118 KWVPEVKH-FCPNVPIILVANKKDLR 142 (207)
T ss_dssp THHHHHHH-HSTTCCEEEEEECGGGG
T ss_pred HHHHHHHH-hCCCCCEEEEEEchhhh
Confidence 45444433 23577889999999985
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=115.44 Aligned_cols=119 Identities=21% Similarity=0.320 Sum_probs=88.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------ 81 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE------------------ 81 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCch------------------
Confidence 579999999999999999999999999998999988665 5688899999999999888711
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..++..+++++|++++|||.... .....+..
T Consensus 82 ------~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~ 114 (191)
T 2a5j_A 82 ------SF------------------------------------RSITRSYYRGAAGALLVYDITRR-----ETFNHLTS 114 (191)
T ss_dssp ------GT------------------------------------SCCCHHHHTTCSEEEEEEETTCH-----HHHHTHHH
T ss_pred ------hh------------------------------------hhhHHHHhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 11 33456788999999999985432 12234455
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..++.+++||.|+.
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccC
Confidence 6666655556778899999999984
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-13 Score=112.72 Aligned_cols=121 Identities=16% Similarity=0.270 Sum_probs=93.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------------- 73 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------------- 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG----------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh----------------
Confidence 3579999999999999999999999999999999998665 66888899999999998886111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ ..++..+++++|++++|||..... ....+.
T Consensus 74 ------------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~ 104 (181)
T 2efe_B 74 ------------Y--------------------------------HSLAPMYYRGAAAAIIVFDVTNQA-----SFERAK 104 (181)
T ss_dssp ------------G--------------------------------GGGTHHHHTTCSEEEEEEETTCHH-----HHHHHH
T ss_pred ------------h--------------------------------hhhhHHHhccCCEEEEEEECCCHH-----HHHHHH
Confidence 1 334567889999999999844321 123344
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+.....+..|+.++++|.|+..
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 666666555567888999999999854
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=113.35 Aligned_cols=120 Identities=27% Similarity=0.314 Sum_probs=88.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.++..+.+...+.+|..+.+...+.+++..+.+.+||+++...+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 82 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---------------- 82 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHH----------------
Confidence 6889999999999999999999999999999999998888888899999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..++++++++++||+..... ....+..
T Consensus 83 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 113 (190)
T 3con_A 83 --------------------------------------------SAMRDQYMRTGEGFLCVFAINNSK-----SFADINL 113 (190)
T ss_dssp ---------------------------------------------------CTTCSEEEEEEETTCHH-----HHHHHHH
T ss_pred --------------------------------------------HHHHHHhhCcCCEEEEEEECcCHH-----HHHHHHH
Confidence 223556789999999999844321 1223344
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....++.++++|.|+.
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 54444332 23467889999999985
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=116.74 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=85.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--------------------- 71 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAG--------------------- 71 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTT---------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCC---------------------
Confidence 58999999999999999999999999999999998666 56788999999999999887
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+++ ..++..+++++|++++|||.... .....+..|
T Consensus 72 ---~~~~------------------------------------~~~~~~~~~~~d~vilV~D~~~~-----~s~~~~~~~ 107 (223)
T 3cpj_B 72 ---QERY------------------------------------RAITSAYYRGAVGALIVYDISKS-----SSYENCNHW 107 (223)
T ss_dssp ---TTTT------------------------------------TCCCGGGTTTCCEEEEEEC-CCH-----HHHHHHHHH
T ss_pred ---ccch------------------------------------hhhHHHHhccCCEEEEEEeCCCH-----HHHHHHHHH
Confidence 1121 34567789999999999985432 122334456
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+.++++|.|+..
T Consensus 108 l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 108 LSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 6666555556788999999999853
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-14 Score=117.00 Aligned_cols=120 Identities=42% Similarity=0.757 Sum_probs=75.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.+|..+.|...+.||+++.+...+.+++..+.+.+||+++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 66 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ------------------- 66 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC--------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 3579999999999999999999999999999999998888766777888899999988871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG- 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~- 159 (330)
+++ ..++..+++++|++++|||.... . ....+.
T Consensus 67 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~ 100 (182)
T 3bwd_D 67 -----EDY------------------------------------NRLRPLSYRGADVFILAFSLISK--A---SYENVSK 100 (182)
T ss_dssp -----CTT------------------------------------TTTGGGGGTTCSEEEEEEETTCH--H---HHHHHHH
T ss_pred -----hhh------------------------------------hhhHHhhccCCCEEEEEEECCCH--H---HHHHHHH
Confidence 111 34566789999999999984421 1 112222
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+... .+..|+.+++||.|+..
T Consensus 101 ~~~~~~~~~-~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 101 KWIPELKHY-APGVPIVLVGTKLDLRD 126 (182)
T ss_dssp THHHHHHHH-CTTCCEEEEEECHHHHT
T ss_pred HHHHHHHHh-CCCCCEEEEEechhhhc
Confidence 455544433 24778999999999843
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=113.84 Aligned_cols=119 Identities=38% Similarity=0.674 Sum_probs=91.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
..+||+++|++|||||||+.+|..+.|...+.||++..+...+.+++..+.+.+||+++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------- 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE------------------- 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG-------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCch-------------------
Confidence 4689999999999999999999999999999999998887788899999999999888611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
++ ..++..+++++|++++|||.... . ....+ ..
T Consensus 85 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~~ 118 (201)
T 2gco_A 85 -----DY------------------------------------DRLRPLSYPDTDVILMCFSIDSP--D---SLENIPEK 118 (201)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--H---HHHHHHHT
T ss_pred -----hH------------------------------------HHHHHHhcCCCCEEEEEEECCCH--H---HHHHHHHH
Confidence 11 33456689999999999984431 1 11122 34
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|...+.. ..+..|+.+++||.|+..
T Consensus 119 ~~~~~~~-~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 119 WTPEVKH-FCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp HHHHHHH-HSTTCCEEEEEECGGGTT
T ss_pred HHHHHHH-hCCCCCEEEEEecHHhhc
Confidence 5444433 235678899999999853
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-13 Score=114.62 Aligned_cols=121 Identities=18% Similarity=0.279 Sum_probs=91.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-------------- 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH--------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh--------------
Confidence 4679999999999999999999999999999999998555 6788899999999999988722110
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..+...|++++|++++|||.... .....+.
T Consensus 84 ---------------------------------------------~~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~ 113 (189)
T 1z06_A 84 ---------------------------------------------KSMVQHYYRNVHAVVFVYDMTNM-----ASFHSLP 113 (189)
T ss_dssp ---------------------------------------------TTTHHHHHTTCCEEEEEEETTCH-----HHHHTHH
T ss_pred ---------------------------------------------hhhhHHHhcCCCEEEEEEECcCH-----HHHHHHH
Confidence 13455678999999999985431 1122344
Q ss_pred CcceeeeccC-CCcccccccceeeccC
Q psy9997 160 GWFWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.... ....++.++++|.|+.
T Consensus 114 ~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 114 AWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp HHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4555554432 5677889999999984
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=113.08 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=92.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 72 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF---------------- 72 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH----------------
Confidence 368999999999999999999999999999999987554 678888999999999998862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 73 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 103 (186)
T 2bme_A 73 --------------------------------------------RSVTRSYYRGAAGALLVYDITSR-----ETYNALTN 103 (186)
T ss_dssp --------------------------------------------HHHHHTTSTTCSEEEEEEETTCH-----HHHHTHHH
T ss_pred --------------------------------------------HHHHHHHHhcCCEEEEEEECcCH-----HHHHHHHH
Confidence 23456789999999999985432 12234445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++++|.|+.
T Consensus 104 ~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 104 WLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECcccc
Confidence 6655555555678899999999984
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-13 Score=111.17 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=92.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------- 82 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE------------------- 82 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC-------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH-------------------
Confidence 58999999999999999999999999999999998666 5677889999999999988611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..+++++|++++|||..... ....+..|
T Consensus 83 -----~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 116 (189)
T 2gf9_A 83 -----RY------------------------------------RTITTAYYRGAMGFLLMYDIANQE-----SFAAVQDW 116 (189)
T ss_dssp -----SS------------------------------------CCSGGGGGTTCSEEEEEEETTCHH-----HHHTHHHH
T ss_pred -----HH------------------------------------hhhHHHhccCCCEEEEEEECCCHH-----HHHHHHHH
Confidence 11 234567899999999999854321 12334456
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++++|.|+.
T Consensus 117 ~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 117 ATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCCEEEEEECcccc
Confidence 666655555678899999999984
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-13 Score=129.70 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=47.3
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
+.+|||+|++.|......+++.+|++++|+|+++...-... .++..+.. .++|+++|+||+|+....
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~--~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRL--RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTT--TTCCEEEEEECTTSCCSC
T ss_pred EEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHH--cCCCEEEEEcCcCCcccc
Confidence 45667777777777667788899999999999876432222 22233222 378999999999997653
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-14 Score=126.90 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=65.9
Q ss_pred cccccccccccc-------------cccccCccccCCCEEEEEEEcCChhhH-hhhhhcchhhhhhcCCCCcEEEEEecc
Q psy9997 191 DRSLFDTAGQED-------------YDRLRPLSYPQTDVFLVCFSVVSPSSF-ENVKEKWVPEITHHCQKTPFLLVGTQI 256 (330)
Q Consensus 191 ~~~~~D~~g~e~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~~~~piilV~nK~ 256 (330)
.+.+|||+|... +......+++.+|++++|+|.++.... .... .++..+.. .+.|+++|+||+
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEECT
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcCc
Confidence 467788888653 444555678899999999998543311 1111 23333322 478999999999
Q ss_pred CCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe---ecc---CCCHHHHHHHHHHHhcC
Q psy9997 257 DLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS---ALT---QKGLKNVFDEAILAALE 317 (330)
Q Consensus 257 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S---a~~---~~~v~~~f~~l~~~i~~ 317 (330)
|+... .....+.+......++ ..|+++| |.+ +.|++++++.+...+-.
T Consensus 209 Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDK------------GTDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCS------------SCCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ccCCc------------chHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99764 2212222221001111 3466655 455 78899999988776644
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=115.93 Aligned_cols=120 Identities=20% Similarity=0.328 Sum_probs=92.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|.++.+...+.+++..+.+.+||+++..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------ 73 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE------------------ 73 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChh------------------
Confidence 46799999999999999999999999999999999998888888999999999999988611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
. + ..++..|++++|++++|||.... .....+..
T Consensus 74 ------~----~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~ 106 (206)
T 2bov_A 74 ------D----Y--------------------------------AAIRDNYFRSGEGFLCVFSITEM-----ESFAATAD 106 (206)
T ss_dssp ------C----C--------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred ------h----h--------------------------------HHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHH
Confidence 1 1 23455678899999999985432 11223345
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 107 FREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 55554443 23577889999999984
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-13 Score=113.16 Aligned_cols=120 Identities=18% Similarity=0.354 Sum_probs=94.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++|..+.+...+.++++..+ ...+.+++..+.+.+||+++..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 76 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE------------------- 76 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG-------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 58999999999999999999999999999999997555 6788899999999999988611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..|++++|++++|||.... .....+..|
T Consensus 77 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 110 (196)
T 3tkl_A 77 -----RF------------------------------------RTITSSYYRGAHGIIVVYDVTDQ-----ESFNNVKQW 110 (196)
T ss_dssp -----GG------------------------------------CTTHHHHHTTCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -----hh------------------------------------hhhHHHHHhhCCEEEEEEECcCH-----HHHHHHHHH
Confidence 11 33456788999999999985432 122344557
Q ss_pred ceeeeccCCCcccccccceeeccCCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
+..+.....+..|+.+++||.|+...
T Consensus 111 ~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 111 LQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHhcCCCCCEEEEEECcccccc
Confidence 66666666677889999999998543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-13 Score=110.59 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=79.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+++|..+.+...+.++..+.+.+.+.+++..+.+.+||+++.....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------------- 66 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------------- 66 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc---------------
Confidence 56899999999999999999999999887665544345567788899999999999887621100
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ . .+...+++++|++++|||.... .+ ...+..
T Consensus 67 -------~---------------------------------~---~~~~~~~~~~~~~i~v~d~~~~--~s---~~~~~~ 98 (175)
T 2nzj_A 67 -------K---------------------------------S---WSQESCLQGGSAYVIVYSIADR--GS---FESASE 98 (175)
T ss_dssp -----------------------------------------C---HHHHHTTTSCSEEEEEEETTCH--HH---HHHHHH
T ss_pred -------h---------------------------------h---hhHHhhcccCCEEEEEEECCCH--HH---HHHHHH
Confidence 0 0 0234578899999999985431 11 122334
Q ss_pred cceeeecc-CCCcccccccceeeccCCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 187 (330)
|...+... ..+..|+.++|||.|+...
T Consensus 99 ~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 99 LRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 44444332 2456788999999999643
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-13 Score=112.10 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=91.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 84 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL------------------- 84 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCC-------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 368999999999999999999999999999999998665 568888999999999998872
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.++ ..++..+++++|++++|||..... ....+..
T Consensus 85 -----~~~------------------------------------~~~~~~~~~~~d~vi~v~D~~~~~-----s~~~~~~ 118 (193)
T 2oil_A 85 -----ERY------------------------------------RAITSAYYRGAVGALLVFDLTKHQ-----TYAVVER 118 (193)
T ss_dssp -----CTT------------------------------------CTTHHHHHTTCCEEEEEEETTCHH-----HHHTHHH
T ss_pred -----hhh------------------------------------hhhhHHHhccCCEEEEEEECCCHH-----HHHHHHH
Confidence 111 234566789999999999854321 1223445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+........++.++++|.|+.
T Consensus 119 ~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 119 WLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp HHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECCCcc
Confidence 6655555555678899999999984
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-13 Score=114.00 Aligned_cols=120 Identities=17% Similarity=0.264 Sum_probs=93.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 70 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY----------------- 70 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------------
Confidence 58999999999999999999999999999999998655 567888999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 71 -------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~~ 102 (203)
T 1zbd_A 71 -------------------------------------------RTITTAYYRGAMGFILMYDITNE-----ESFNAVQDW 102 (203)
T ss_dssp -------------------------------------------HHHHHTTGGGCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred -------------------------------------------cchHHHhhcCCCEEEEEEECcCH-----HHHHHHHHH
Confidence 23456788999999999985432 112334456
Q ss_pred ceeeeccCCCcccccccceeeccCCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
+..+.....+..|+.++++|.|+...
T Consensus 103 ~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 103 STQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHhcCCCCCEEEEEECcccCcc
Confidence 66665555567889999999999643
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-13 Score=113.95 Aligned_cols=119 Identities=17% Similarity=0.292 Sum_probs=92.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 85 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF---------------- 85 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------------
Confidence 479999999999999999999999999989999998666 557778888999999998861111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 86 --------------------------------------------~~~~~~~~~~~d~iilV~d~~~~-----~s~~~~~~ 116 (192)
T 2fg5_A 86 --------------------------------------------HSLAPMYYRGSAAAVIVYDITKQ-----DSFYTLKK 116 (192)
T ss_dssp --------------------------------------------GGGTHHHHTTCSEEEEEEETTCT-----HHHHHHHH
T ss_pred --------------------------------------------HhhhHHhhccCCEEEEEEeCCCH-----HHHHHHHH
Confidence 33456688999999999984432 12234455
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++++|.|+.
T Consensus 117 ~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 117 WVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECcccc
Confidence 6666655555678899999999984
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-13 Score=110.53 Aligned_cols=120 Identities=27% Similarity=0.336 Sum_probs=92.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||++++..+.+...+.+|+.+.+...+.+++..+.+.+||+++.
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------------------- 61 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------- 61 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 8899999999999999999999999999999999998888888889999999999988861
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ + ..++..+++++|+++++|+.... .....+..
T Consensus 62 -----~~----~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~ 95 (166)
T 2ce2_X 62 -----EE----Y--------------------------------SAMRDQYMRTGEGFLCVFAINNT-----KSFEDIHQ 95 (166)
T ss_dssp -----SS----C--------------------------------CHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----hh----h--------------------------------hHHHHHhhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 11 1 22345678889999999984421 12233445
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 96 ~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 96 YREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 55544332 23467889999999985
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=112.66 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=90.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.++..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF---------------- 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------------
Confidence 579999999999999999999999999999999997555 668889999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 78 --------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~ 108 (195)
T 1x3s_A 78 --------------------------------------------RTLTPSYYRGAQGVILVYDVTRR-----DTFVKLDN 108 (195)
T ss_dssp --------------------------------------------CCSHHHHHTTCCEEEEEEETTCH-----HHHHTHHH
T ss_pred --------------------------------------------hhhhHHHhccCCEEEEEEECcCH-----HHHHHHHH
Confidence 23455678999999999985432 11223345
Q ss_pred cceeeeccC-CCcccccccceeeccC
Q psy9997 161 WFWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... ....|+.++++|.|+.
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 555544432 3567889999999983
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=128.84 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+||+++|.+|||||||++++++..
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999876
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-13 Score=134.02 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=53.0
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
.+.+|||+|+..|......+++.+|++++|+|+++..+++... .|.. +.. .++|+++|+||+|+....
T Consensus 78 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~-~~~--~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQ-AEK--YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp EEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHH-HHH--TTCCEEEEEECTTSTTCC
T ss_pred EEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHH-HHH--cCCCEEEEEECCCcccCC
Confidence 3456777777777777777888999999999999988887776 4543 333 389999999999998653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=108.82 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=90.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------ 65 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE------------------ 65 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGG------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcH------------------
Confidence 478999999999999999999999999999999998555 6788889999999999888611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..+...+++++|++++|||..... ....+..
T Consensus 66 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 98 (168)
T 1z2a_A 66 ------EF------------------------------------DAITKAYYRGAQACVLVFSTTDRE-----SFEAISS 98 (168)
T ss_dssp ------GT------------------------------------TCCCHHHHTTCCEEEEEEETTCHH-----HHHTHHH
T ss_pred ------hH------------------------------------HHHHHHHhcCCCEEEEEEECcCHH-----HHHHHHH
Confidence 11 234566889999999999854321 1223444
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... +..|+.++++|.|+.
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLL 122 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGG
T ss_pred HHHHHHHhC-CCCCEEEEEECcccC
Confidence 555444333 567889999999984
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-13 Score=112.87 Aligned_cols=120 Identities=20% Similarity=0.327 Sum_probs=91.9
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||++++..+.|...+.+|.++.+...+.+++..+.+.+||+++...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------------- 78 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED----------------- 78 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc-----------------
Confidence 578999999999999999999999999999999999988888889999999999999887211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ ..++..|++++|++++|||.... .....+..
T Consensus 79 -----------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 110 (187)
T 2a9k_A 79 -----------Y--------------------------------AAIRDNYFRSGEGFLCVFSITEM-----ESFAATAD 110 (187)
T ss_dssp -----------C--------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----------c--------------------------------HHHHHHHhccCCEEEEEEECcCH-----HHHHHHHH
Confidence 1 23455678899999999985432 11223344
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 111 ~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 111 FREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp HHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEECcccc
Confidence 55544443 23467889999999984
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-13 Score=112.12 Aligned_cols=119 Identities=25% Similarity=0.308 Sum_probs=92.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||++++..+.+...+.+|..+.+...+.+++..+.+.+||+++...+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------------- 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH-----------------
Confidence 479999999999999999999999999999999998888888999999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..|++++|++++|||.... .....+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 97 (189)
T 4dsu_A 66 -------------------------------------------SAMRDQYMRTGEGFLCVFAINNT-----KSFEDIHHY 97 (189)
T ss_dssp -------------------------------------------CTTHHHHHHHCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456678899999999985432 112234445
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
...+.. ...+..|+.+++||.|+.
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred HHHHHHhcCCCCCcEEEEEECccCc
Confidence 554444 344678899999999985
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-13 Score=115.54 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=81.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 87 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF---------------- 87 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHH----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhH----------------
Confidence 468999999999999999999999999999999997555 668888999999999988862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 88 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 118 (200)
T 2o52_A 88 --------------------------------------------RSVTRSYYRGAAGALLVYDITSRE-----TYNSLAA 118 (200)
T ss_dssp --------------------------------------------SCCCHHHHTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------HHHHHHHhccCCEEEEEEECcCHH-----HHHHHHH
Confidence 223556789999999999854321 2234456
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.+++||.|+.
T Consensus 119 ~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 119 WLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp HHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcc
Confidence 6666655555778899999999984
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-13 Score=108.55 Aligned_cols=119 Identities=12% Similarity=0.103 Sum_probs=72.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|....+. ...++.+..+.+.+.+++..+.+.+||+++....
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------------- 62 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG----------------- 62 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccc-----------------
Confidence 4689999999999999999999866553 4567777778888899999999999988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..|++++|++++|||.... .....+..|
T Consensus 63 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 94 (166)
T 3q72_A 63 -------------------------------------------RWLPGHCMAMGDAYVIVYSVTDK-----GSFEKASEL 94 (166)
T ss_dssp -----------------------------------------------------CCEEEEEEETTCH-----HHHHHHHHH
T ss_pred -------------------------------------------hhhhhhhhhhCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456788999999999984432 122344455
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 95 ~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 95 RVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp HHHHHHCC---CCCEEEEEECTTCCS
T ss_pred HHHHHHhcCCCCCCEEEEEecccccc
Confidence 5544432 346788999999999864
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=110.41 Aligned_cols=119 Identities=23% Similarity=0.302 Sum_probs=86.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 69 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF---------------- 69 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh----------------
Confidence 468999999999999999999999999999999998655 678889999999999998862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 70 --------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~-----s~~~~~~ 100 (177)
T 1wms_A 70 --------------------------------------------RSLRTPFYRGSDCCLLTFSVDDSQ-----SFQNLSN 100 (177)
T ss_dssp --------------------------------------------HHHHGGGGTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------hhhHHHHHhcCCEEEEEEECcCHH-----HHHHHHH
Confidence 334567899999999999854321 1223344
Q ss_pred cceeeeccC----CCcccccccceeeccC
Q psy9997 161 WFWFISTEH----SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++++|.|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 101 WKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp HHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HHHHHHHHccccccCCCcEEEEEECCccc
Confidence 554443322 2667889999999984
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-13 Score=110.66 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=92.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------- 75 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE------------------- 75 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG-------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh-------------------
Confidence 68999999999999999999999999999999998655 6688889999999999988611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..+++++|++++|||.... .....+..|
T Consensus 76 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 109 (179)
T 1z0f_A 76 -----RF------------------------------------RAVTRSYYRGAAGALMVYDITRR-----STYNHLSSW 109 (179)
T ss_dssp -----GT------------------------------------CHHHHHHHHTCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -----Hh------------------------------------hhhHHHHhccCCEEEEEEeCcCH-----HHHHHHHHH
Confidence 11 23355678899999999985432 122344566
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++++|.|+.
T Consensus 110 ~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 110 LTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCcEEEEEECcccc
Confidence 666655555678899999999984
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-13 Score=110.65 Aligned_cols=118 Identities=19% Similarity=0.380 Sum_probs=84.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------------------ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE------------------ 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGG------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCCh------------------
Confidence 468999999999999999999999999999999998655 5677888889999999888611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..++..+++++|++++|||..... ....+..
T Consensus 64 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 96 (170)
T 1g16_A 64 ------RF------------------------------------RTITTAYYRGAMGIILVYDITDER-----TFTNIKQ 96 (170)
T ss_dssp ------GT------------------------------------SCCCHHHHTTEEEEEEEEETTCHH-----HHHTHHH
T ss_pred ------hh------------------------------------hhhHHHHhccCCEEEEEEECCCHH-----HHHHHHH
Confidence 11 233556789999999999854321 1233445
Q ss_pred cceeeeccCCCcccccccceeecc
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
|+..+.....+..|+.++++|.|+
T Consensus 97 ~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 97 WFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTC
T ss_pred HHHHHHHhcCCCCcEEEEEECccC
Confidence 666655555567889999999998
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=114.72 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=80.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 87 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ------------------- 87 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC-------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 468999999999999999999999999999999998655 678889999999999998871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
++ + ..++..+++++|++++|||..... ....+..
T Consensus 88 -----~~----~--------------------------------~~~~~~~~~~~d~iilv~d~~~~~-----s~~~~~~ 121 (199)
T 2p5s_A 88 -----ER----F--------------------------------RSIAKSYFRKADGVLLLYDVTCEK-----SFLNIRE 121 (199)
T ss_dssp -----TT----C--------------------------------HHHHHHHHHHCSEEEEEEETTCHH-----HHHTHHH
T ss_pred -----cc----h--------------------------------hhhHHHHHhhCCEEEEEEECCChH-----HHHHHHH
Confidence 11 1 234556788999999999854321 1223345
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.+++||.|+.
T Consensus 122 ~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 122 WVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccc
Confidence 6655554445678899999999983
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-13 Score=113.09 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=87.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECC-EEEEEEEeecCCceeEeEEEeecCCCceeE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGG-EPYTLGLNFARTMQTIKCVVVGDGAVGKTC 78 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ki~vvG~~~~GKTs 78 (330)
++.+||+++|++|||||||+.+|..+.|...+.||++ +.+...+.+++ ..+.+.+||+++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 66 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ----------------- 66 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC-----------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC-----------------
Confidence 4689999999999999999999999999888889996 45577888876 7899999998871
Q ss_pred EEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 79 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
..+ ..++..|++++|++++|||..... ....+
T Consensus 67 -------~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~ 98 (178)
T 2hxs_A 67 -------TIG------------------------------------GKMLDKYIYGAQGVLLVYDITNYQ-----SFENL 98 (178)
T ss_dssp -------CTT------------------------------------CTTHHHHHTTCSEEEEEEETTCHH-----HHHTH
T ss_pred -------ccc------------------------------------cchhhHHHhhCCEEEEEEECCCHH-----HHHHH
Confidence 111 334566789999999999854321 12233
Q ss_pred CCcceeeeccC--CCccc-ccccceeeccC
Q psy9997 159 GGWFWFISTEH--SPPMK-LHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~~~--~~~~~-~~~~g~~~~~~ 185 (330)
..|+..+.... ....+ +.+++||.|+.
T Consensus 99 ~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 99 EDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 44554443321 11334 68899999984
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-13 Score=116.19 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=84.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||+.+|....+...+.++. .+.+...+.+++..+.+.+||+++....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---------------- 85 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---------------- 85 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG----------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc----------------
Confidence 46899999999999999999997554443444444 4666778889999999999988762110
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+ ++..||+++|++++|||.... .....+..
T Consensus 86 -----------------------------------------~~~--~~~~~~~~~d~~ilv~d~~~~-----~s~~~~~~ 117 (195)
T 3cbq_A 86 -----------------------------------------GGW--LRDHCLQTGDAFLIVFSVTDR-----RSFSKVPE 117 (195)
T ss_dssp -----------------------------------------GHH--HHHHHHHHCSEEEEEEETTCH-----HHHHTHHH
T ss_pred -----------------------------------------hhh--hHHHhhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 000 234578899999999985431 11223445
Q ss_pred cceeeeccC-CCcccccccceeeccCCC
Q psy9997 161 WFWFISTEH-SPPMKLHTLGFITNINPG 187 (330)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 187 (330)
|+..+.... ....|+.++|+|.|+...
T Consensus 118 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 118 TLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp HHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 665554432 357888999999999643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-14 Score=131.74 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=54.5
Q ss_pred cccccCccccCCCEEEEEEEcCChhhHhhhhh-cchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH
Q psy9997 203 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG 281 (330)
Q Consensus 203 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 281 (330)
+..+...++.+++.+++++...+. .+..... .++..+.. .+.|+++|+||+|+.... ....+..
T Consensus 156 ~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~------------~~~~~~~ 220 (353)
T 2x2e_A 156 IRDMLMQFVTKENCLILAVSPANS-DLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEG------------TDARDVL 220 (353)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTS-CGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTT------------CCCHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEecCCC-ccchhHHHHHHHHhCc--CCCceEEEeccccccCcc------------hhHHHHH
Confidence 344555566677766665543322 2332210 13333322 478999999999997541 1111111
Q ss_pred HH--HHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 282 EK--LAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 282 ~~--~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
+. +....+..+++++||+++.|++++++.+..
T Consensus 221 ~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 221 ENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred hCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 10 001122246788999999999999998876
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-13 Score=115.01 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=84.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 88 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---------------- 88 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------------
Confidence 368999999999999999999999999999999997444 678888999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 89 --------------------------------------------~~~~~~~~~~~d~iilV~D~~~~~-----s~~~~~~ 119 (192)
T 2il1_A 89 --------------------------------------------NSITSAYYRSAKGIILVYDITKKE-----TFDDLPK 119 (192)
T ss_dssp --------------------------------------------HHHHHHHHHHCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------HHHHHHHhcCCCEEEEEEECcCHH-----HHHHHHH
Confidence 223456788999999999854321 1223445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+........++.+++||.|+.
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECcccc
Confidence 6655555555678899999999984
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=107.95 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=87.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 69 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE------------------- 69 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG-------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch-------------------
Confidence 58999999999999999999999999999999997555 6788899999999999988711
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..+++++|++++|||.... .....+..|
T Consensus 70 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 103 (181)
T 3tw8_B 70 -----RF------------------------------------RTITSTYYRGTHGVIVVYDVTSA-----ESFVNVKRW 103 (181)
T ss_dssp -----GC------------------------------------SSCCGGGGTTCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred -----hh------------------------------------hhhHHHHhccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 11 33466789999999999985432 122234456
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.. ..+..|+.+++||.|+.
T Consensus 104 ~~~~~~-~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 104 LHEINQ-NCDDVCRILVGNKNDDP 126 (181)
T ss_dssp HHHHHH-HCTTSEEEEEEECTTCG
T ss_pred HHHHHH-hCCCCCEEEEEECCCCc
Confidence 555433 33577889999999984
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.5e-13 Score=111.94 Aligned_cols=118 Identities=19% Similarity=0.360 Sum_probs=91.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 82 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF---------------- 82 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------------
Confidence 368999999999999999999999999999999998665 568889999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 83 --------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~ 113 (213)
T 3cph_A 83 --------------------------------------------RTITTAYYRGAMGIILVYDVTDER-----TFTNIKQ 113 (213)
T ss_dssp --------------------------------------------TCCCHHHHTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------HHHHHHHhccCCEEEEEEECCCHH-----HHHHHHH
Confidence 233556789999999999854321 1233445
Q ss_pred cceeeeccCCCcccccccceeecc
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
|+..+........|+.++++|.|+
T Consensus 114 ~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 114 WFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp HHHHHHHHTTTCSEEEEEEECTTC
T ss_pred HHHHHHHhcCCCCCEEEEEECCCC
Confidence 666655555567889999999998
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-13 Score=111.62 Aligned_cols=119 Identities=21% Similarity=0.326 Sum_probs=88.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------------- 69 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER----------------- 69 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH-----------------
Confidence 478999999999999999999999999999999997444 66788888899999999886111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ ..++..+++++|++++|||..... ....+..
T Consensus 70 -------~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 101 (207)
T 1vg8_A 70 -------F------------------------------------QSLGVAFYRGADCCVLVFDVTAPN-----TFKTLDS 101 (207)
T ss_dssp -------G------------------------------------SCSCCGGGTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred -------H------------------------------------HHhHHHHHhCCcEEEEEEECCCHH-----HHHHHHH
Confidence 1 234567889999999999854321 1223334
Q ss_pred cceeeeccC----CCcccccccceeeccC
Q psy9997 161 WFWFISTEH----SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++++|.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 102 WRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp HHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 544443322 2467889999999984
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.9e-13 Score=109.22 Aligned_cols=119 Identities=17% Similarity=0.260 Sum_probs=81.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.+||+++|++|||||||+.++..+.|...+.+|++.. +...+.++ +..+.+.+||+++...+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------------- 71 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF--------------- 71 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh---------------
Confidence 47899999999999999999999999999999999644 46677776 66788999988762111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..+...+++++|++++|||..... ....+.
T Consensus 72 ---------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~ 101 (182)
T 1ky3_A 72 ---------------------------------------------QSLGVAFYRGADCCVLVYDVTNAS-----SFENIK 101 (182)
T ss_dssp --------------------------------------------------CCSTTCCEEEEEEETTCHH-----HHHTHH
T ss_pred ---------------------------------------------hhhhHHHhhcCCEEEEEEECCChH-----HHHHHH
Confidence 234556889999999999854321 222344
Q ss_pred Ccceeeecc----CCCcccccccceeeccC
Q psy9997 160 GWFWFISTE----HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~----~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+... ..+..|+.++++|.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 555444332 23677889999999984
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-13 Score=108.99 Aligned_cols=120 Identities=19% Similarity=0.336 Sum_probs=89.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||++++..+.|...+.+|++..+...+..++..+.+.+||+++...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------------------ 63 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ------------------ 63 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchh------------------
Confidence 47899999999999999999999999999999999888888888899999999999887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..++..+++++|++++|||.... .....+..|
T Consensus 64 ----------~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~~ 96 (172)
T 2erx_A 64 ----------F--------------------------------PAMQRLSISKGHAFILVYSITSR-----QSLEELKPI 96 (172)
T ss_dssp ----------C--------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHTTHHH
T ss_pred ----------h--------------------------------HHHHHHhcccCCEEEEEEECcCH-----HHHHHHHHH
Confidence 1 23345578889999999985421 112233444
Q ss_pred ceeeecc--CCCcccccccceeeccCC
Q psy9997 162 FWFISTE--HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~--~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++++|.|+..
T Consensus 97 ~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 97 YEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 4433332 235678899999999853
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-13 Score=116.68 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=61.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC--CCCCCCCCCcc-cceeEEEEECCE--EEEEEEeecCCceeEeEEEeecCCCce
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVF-DNYAVTVMIGGE--PYTLGLNFARTMQTIKCVVVGDGAVGK 76 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~--~f~~~~~~tv~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~ki~vvG~~~~GK 76 (330)
+.+||+++|++|||||||+.+|..+ .|...+.+|++ +.+...+.+++. .+.+.+||+++...+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------ 86 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY------------ 86 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH------------
Confidence 4689999999999999999999999 89999999997 556778888887 899999998873211
Q ss_pred eEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccc
Q psy9997 77 TCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNR 156 (330)
Q Consensus 77 Tsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 156 (330)
..++..+++++|++++|||..... ...
T Consensus 87 ------------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~ 113 (208)
T 2yc2_C 87 ------------------------------------------------KEQISQYWNGVYYAILVFDVSSME-----SFE 113 (208)
T ss_dssp ------------------------------------------------HHHHSTTCCCCCEEEEEEETTCHH-----HHH
T ss_pred ------------------------------------------------HHHHHHHHhhCcEEEEEEECCCHH-----HHH
Confidence 234667899999999999854321 223
Q ss_pred ccCCcceeeeccCC---CcccccccceeeccCC
Q psy9997 157 KLGGWFWFISTEHS---PPMKLHTLGFITNINP 186 (330)
Q Consensus 157 ~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~ 186 (330)
.+..|+..+..... ...|+.+++||.|+..
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 114 SCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 44566666655444 6788999999999853
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=118.22 Aligned_cols=59 Identities=31% Similarity=0.399 Sum_probs=37.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCC-ceeecceEEEEECCc---------------eeeeeeeecCCCcc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVP-TVFDNYAVTVMIGGE---------------PYTLGLFDTAGQED 123 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~ 123 (330)
+||+++|.+|||||||++++++..+. ..|+. |+..... .+.+.+. +..+++|||||+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 68999999999999999999987742 23322 3333332 2334432 24677888888744
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-13 Score=114.21 Aligned_cols=121 Identities=17% Similarity=0.342 Sum_probs=88.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||+++
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--------------------- 91 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG--------------------- 91 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTT---------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCC---------------------
Confidence 58999999999999999999999999888888887555 67888999999999999886
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
...+ ..++..+++++|++++|||.... .....+..|
T Consensus 92 ---~~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 127 (199)
T 3l0i_B 92 ---QERF------------------------------------RTITSSYYRGAHGIIVVYDVTDQ-----ESFNNVKQW 127 (199)
T ss_dssp ---CTTC------------------------------------CCCSCC--CCCSEEEECC-CCCS-----HHHHHHHHH
T ss_pred ---cHhH------------------------------------HHHHHHHhhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 1111 34466789999999999985431 122334456
Q ss_pred ceeeeccCCCcccccccceeeccCCCc
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~ 188 (330)
+..+........++.+++||.|+...+
T Consensus 128 ~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 128 LQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp HHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred HHHHHHhccCCCCEEEEEECccCCccc
Confidence 666655555678899999999986543
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=128.26 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=52.3
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
..+.+|||+|+..|......+++.+|++++|+|+++....+... .|. .+.. .++|+++|+||+|+...
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~-~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWR-QANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHH-HHHH--cCCCEEEEEeCCCcccc
Confidence 44567788887888777777889999999999999877666554 443 2322 37999999999999764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-13 Score=112.01 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=90.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------------ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED------------------ 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc------------------
Confidence 57999999999999999999999999999999999988888889999999999999887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
. .++..+++++|++++|||.... .....+..|
T Consensus 89 ---------~----------------------------------~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~~~ 120 (196)
T 2atv_A 89 ---------T----------------------------------IQREGHMRWGEGFVLVYDITDR-----GSFEEVLPL 120 (196)
T ss_dssp ---------C----------------------------------HHHHHHHHHCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred ---------c----------------------------------cchhhhhccCCEEEEEEECcCH-----HHHHHHHHH
Confidence 0 0134567889999999985431 112234445
Q ss_pred ceeeecc-CCCcccccccceeeccC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+..+... ..+..|+.++++|.|+.
T Consensus 121 ~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 121 KNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp HHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred HHHHHHhhCCCCCcEEEEEECcccc
Confidence 5544442 34577899999999984
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-13 Score=116.87 Aligned_cols=119 Identities=52% Similarity=0.893 Sum_probs=90.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++..++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------------- 91 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------------- 91 (204)
Confidence 468999999999999999999999999999999999888888888899999999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-C
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG-G 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-~ 160 (330)
..++..+++++|++++|||.... .....+. .
T Consensus 92 -------------------------------------------~~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~~~ 123 (204)
T 3th5_A 92 -------------------------------------------DRLRPLSYPQTDVFLICFSLVSP-----ASFENVRAK 123 (204)
Confidence 23455678999999999984321 1112232 5
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.+++||.|+..
T Consensus 124 ~~~~l~~~-~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 124 WYPEVRHH-CPNTPIILVGTKLDLRD 148 (204)
Confidence 55544432 23778899999999854
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-13 Score=115.65 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=92.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 85 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY----------------- 85 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-----------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-----------------
Confidence 68999999999999999999999999999999997555 668888888999999988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .+ ...+..|
T Consensus 86 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 117 (191)
T 3dz8_A 86 -------------------------------------------RTITTAYYRGAMGFILMYDITNE--ES---FNAVQDW 117 (191)
T ss_dssp -------------------------------------------HHHHHHHHTTCCEEEEEEETTCH--HH---HHTHHHH
T ss_pred -------------------------------------------HHHHHHHHccCCEEEEEEECcCH--HH---HHHHHHH
Confidence 33456688999999999985431 12 2344557
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++|+|.|+.
T Consensus 118 ~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 118 ATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCCEEEEEECCCCc
Confidence 766666566788899999999984
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=109.64 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=87.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee--EEEEECCE---------EEEEEEeecCCceeEeEEEeec
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA--VTVMIGGE---------PYTLGLNFARTMQTIKCVVVGD 71 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~ki~vvG~ 71 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+. +.+.+++. .+.+.+||+++...+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------- 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------- 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------
Confidence 589999999999999999999999999999999986664 46666665 788899988762111
Q ss_pred CCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhh
Q psy9997 72 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRS 151 (330)
Q Consensus 72 ~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~ 151 (330)
..+...+++++|++++|||....
T Consensus 84 -----------------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~---- 106 (195)
T 3bc1_A 84 -----------------------------------------------------RSLTTAFFRDAMGFLLLFDLTNE---- 106 (195)
T ss_dssp -----------------------------------------------------HHHHHHTTTTCSEEEEEEETTCH----
T ss_pred -----------------------------------------------------HHHHHHHHcCCCEEEEEEECCCH----
Confidence 23456688999999999985432
Q ss_pred cccccccCCcceeeeccCC-CcccccccceeeccC
Q psy9997 152 VDWNRKLGGWFWFISTEHS-PPMKLHTLGFITNIN 185 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 185 (330)
.....+..|+..+..... +..|+.+++||.|+.
T Consensus 107 -~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 107 -QSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp -HHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred -HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 112233456655544333 678899999999984
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-13 Score=114.49 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=91.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+||+++|++|||||||+.+|+.+.|...+.+|++..+ .....+++..+.+.+||+++.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 74 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ------------------ 74 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh------------------
Confidence 3579999999999999999999999999998999997444 667888999999999998871
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+.+ ..++..+++++|++++|||.... .....+.
T Consensus 75 ------~~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~ 107 (221)
T 3gj0_A 75 ------EKF------------------------------------GGLRDGYYIQAQCAIIMFDVTSR-----VTYKNVP 107 (221)
T ss_dssp ------GGT------------------------------------SCCCHHHHTTCCEEEEEEETTCH-----HHHHTHH
T ss_pred ------HHH------------------------------------hHHHHHHHhcCCEEEEEEECCCH-----HHHHHHH
Confidence 111 33466789999999999985432 1122333
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+... .+..|+.++|||.|+..
T Consensus 108 ~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 108 NWHRDLVRV-CENIPIVLCGNKVDIKD 133 (221)
T ss_dssp HHHHHHHHH-STTCCEEEEEECTTSSS
T ss_pred HHHHHHHHh-CCCCCEEEEEECCcccc
Confidence 455555443 24678899999999854
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-13 Score=107.62 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=78.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|....+...+.++. .+.+...+.+++..+.+.+||+++.....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------------- 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------------- 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc----------------
Confidence 4899999999999999999999887776666555 45567788899999999999887622110
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 97 (169)
T 3q85_A 66 -------------------------------------------GWLQDHCLQTGDAFLIVFSVTDR-----RSFSKVPET 97 (169)
T ss_dssp -----------------------------------------------CHHHHHCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -------------------------------------------hhhhhhhhccCCEEEEEEECCCh-----HHHHHHHHH
Confidence 11344567889999999984431 223344556
Q ss_pred ceeeeccC-CCcccccccceeeccC
Q psy9997 162 FWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
+..+.... .+..|+.++|+|.|+.
T Consensus 98 ~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 98 LLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp HHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred HHHHHhcccCCCCCEEEEeeCcchh
Confidence 65554433 3578899999999985
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=109.82 Aligned_cols=116 Identities=17% Similarity=0.108 Sum_probs=78.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|. .+.||++.. ...+.+++ +.+.+||+++...+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~----------------- 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQA----------------- 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC---------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhh-----------------
Confidence 5789999999999999999999998874 578888755 45667777 78899998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..||+++|++++|||.... ........|
T Consensus 83 -------------------------------------------~~~~~~~~~~~d~~i~v~D~~~~-----~s~~~~~~~ 114 (198)
T 1f6b_A 83 -------------------------------------------RRVWKNYLPAINGIVFLVDCADH-----ERLLESKEE 114 (198)
T ss_dssp -------------------------------------------CCGGGGGGGGCSEEEEEEETTCG-----GGHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33566789999999999985432 112233345
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 115 ~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 115 LDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHhCcccCCCcEEEEEECCCccc
Confidence 4444332 335678899999999853
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=111.50 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred cccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC-H
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS-F 278 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~-~ 278 (330)
+++..+.+.+++++|++++|||++++. +++.+. .|+..+.. .++|+++|+||+|+..+ +.+. .
T Consensus 67 er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~--~~~~~ilV~NK~DL~~~------------~~v~~~ 131 (302)
T 2yv5_A 67 ERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEY--FKVEPVIVFNKIDLLNE------------EEKKEL 131 (302)
T ss_dssp CCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHH--TTCEEEEEECCGGGCCH------------HHHHHH
T ss_pred ChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHh--CCCCEEEEEEcccCCCc------------cccHHH
Confidence 777777888999999999999999996 888887 89887765 58999999999999753 2222 4
Q ss_pred HHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHH
Q psy9997 279 EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312 (330)
Q Consensus 279 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 312 (330)
+++.++++..+ .+++++||++|.|++++|..+.
T Consensus 132 ~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 132 ERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 55667777777 6899999999999999998654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=109.31 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=88.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+...+.+++..+.+.+||+++...+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 69 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------------- 69 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC-----------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh-----------------
Confidence 368999999999999999999999999999999999888888888999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .+ ...+..|
T Consensus 70 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 101 (199)
T 2gf0_A 70 -------------------------------------------PAMQRLSISKGHAFILVFSVTSK--QS---LEELGPI 101 (199)
T ss_dssp -------------------------------------------HHHHHHHHHHCSEEEEEEETTCH--HH---HHTTHHH
T ss_pred -------------------------------------------HHHHHHhhccCCEEEEEEECcCH--HH---HHHHHHH
Confidence 23445678889999999985431 11 1223334
Q ss_pred ceeeecc--CCCcccccccceeeccC
Q psy9997 162 FWFISTE--HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~--~~~~~~~~~~g~~~~~~ 185 (330)
+..+... ..+..|+.+++||.|+.
T Consensus 102 ~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 102 YKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp HHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred HHHHHHHhcCCCCCCEEEEEECccCC
Confidence 3333221 13467889999999984
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-13 Score=113.53 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=87.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCE----------EEEEEEeecCCceeEeEEEee
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGE----------PYTLGLNFARTMQTIKCVVVG 70 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~ki~vvG 70 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+ .+.+.+++. .+.+.+||+++...+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~------ 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF------ 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH------
Confidence 368999999999999999999999999888889987555 556777766 788889988762111
Q ss_pred cCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhh
Q psy9997 71 DGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRR 150 (330)
Q Consensus 71 ~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~ 150 (330)
..++..+++++|++++|||....
T Consensus 98 ------------------------------------------------------~~~~~~~~~~~d~iilV~D~~~~--- 120 (217)
T 2f7s_A 98 ------------------------------------------------------RSLTTAFFRDAMGFLLMFDLTSQ--- 120 (217)
T ss_dssp ------------------------------------------------------HHHHHHHHTTCCEEEEEEETTCH---
T ss_pred ------------------------------------------------------HhHHHHHhcCCCEEEEEEECcCH---
Confidence 22345678999999999985432
Q ss_pred hcccccccCCcceeeeccCC-CcccccccceeeccC
Q psy9997 151 SVDWNRKLGGWFWFISTEHS-PPMKLHTLGFITNIN 185 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 185 (330)
.....+..|+..+..... ...|+.++++|.|+.
T Consensus 121 --~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 121 --QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp --HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred --HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 112234456655544433 678899999999984
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-13 Score=112.33 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=73.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC--CCCCCCCCCcccce-eEEEEE---CCEEEEEEEeecCCceeEeEEEeecCCCce
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNY-AVTVMI---GGEPYTLGLNFARTMQTIKCVVVGDGAVGK 76 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~--~f~~~~~~tv~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ki~vvG~~~~GK 76 (330)
.+||+++|++|||||||+.+|+.. .|...+.+|++..+ ...+.+ ++..+.+.+||+++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------ 69 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF------------ 69 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH------------
Confidence 589999999999999999999984 67778899987555 334443 346778899988872221
Q ss_pred eEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccc
Q psy9997 77 TCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNR 156 (330)
Q Consensus 77 Tsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 156 (330)
..+++.|+++++++++|||.+.. .....
T Consensus 70 ------------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~----~~s~~ 97 (184)
T 2zej_A 70 ------------------------------------------------YSTHPHFMTQRALYLAVYDLSKG----QAEVD 97 (184)
T ss_dssp ------------------------------------------------HTTSHHHHHHSEEEEEEEEGGGC----HHHHH
T ss_pred ------------------------------------------------HHhhHHHccCCcEEEEEEeCCcc----hhHHH
Confidence 23456678889999999984332 11123
Q ss_pred ccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 157 KLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+..|+..+... .+..|+.++|||.|+..
T Consensus 98 ~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 98 AMKPWLFNIKAR-ASSSPVILVGTHLDVSD 126 (184)
T ss_dssp THHHHHHHHHHH-CTTCEEEEEEECGGGCC
T ss_pred HHHHHHHHHHhh-CCCCcEEEEEECCCccc
Confidence 455666554332 24678899999999854
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-12 Score=126.97 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=50.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+|||+|+..|......+++.+|++++|+|.++..+++... .|. .+.. .++|+++|+||+|+...
T Consensus 77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~-~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWR-QATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHH-HHHH--TTCCEEEEEECTTSTTC
T ss_pred EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHH-HHHH--cCCCEEEEEECCCcccc
Confidence 445666666777666677788899999999999988877765 443 3443 37999999999999865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.4e-12 Score=104.28 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=81.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++.. ...+.+++ +.+.+||+++....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~----------------- 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQA----------------- 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGG-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHH-----------------
Confidence 4689999999999999999999999885 577888754 45667776 77889988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..|++++|++++|||..... .......|
T Consensus 81 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~~ 112 (190)
T 1m2o_B 81 -------------------------------------------RRLWKDYFPEVNGIVFLVDAADPE-----RFDEARVE 112 (190)
T ss_dssp -------------------------------------------TTSGGGGCTTCCEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCChH-----HHHHHHHH
Confidence 334567899999999999855321 12233344
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 113 ~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 113 LDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHcchhhcCCCEEEEEECCCCcC
Confidence 4433322 235678899999999854
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.7e-12 Score=104.62 Aligned_cols=118 Identities=16% Similarity=0.298 Sum_probs=87.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||++++....+...+.||++..+ ...+.+++..+.+++|++++..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~------------------ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER------------------ 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc------------------
Confidence 58999999999999999999999999999999998665 67889999999999998776211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..+...++++++++++|||...... ...+..|
T Consensus 91 ------~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~ 123 (191)
T 1oix_A 91 ------Y------------------------------------RAITSAYYRGAVGALLVYDIAKHLT-----YENVERW 123 (191)
T ss_dssp ------S------------------------------------SCCCHHHHTTCCEEEEEEETTCHHH-----HHTHHHH
T ss_pred ------h------------------------------------hhhhHHHhhcCCEEEEEEECcCHHH-----HHHHHHH
Confidence 1 2234567888999999998553211 1122334
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++..+++|.|+.
T Consensus 124 ~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 124 LKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHhcCCCCcEEEEEECcccc
Confidence 433333333466788899999984
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-12 Score=107.92 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=80.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
...||+++|++|||||||+.+|..+.|.. .+.+|++.... . ++...+.+.+||+++...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~----------------- 75 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-T--FEKGRVAFTVFDMGGAKK----------------- 75 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-E--EEETTEEEEEEEECCSGG-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-E--EEeCCEEEEEEECCCCHh-----------------
Confidence 46899999999999999999999999999 89999873332 2 335567789998887211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ ..++..|++++|++++|||.... .....+..
T Consensus 76 -----------~--------------------------------~~~~~~~~~~~d~ii~v~D~~~~-----~s~~~~~~ 107 (199)
T 4bas_A 76 -----------F--------------------------------RGLWETYYDNIDAVIFVVDSSDH-----LRLCVVKS 107 (199)
T ss_dssp -----------G--------------------------------GGGGGGGCTTCSEEEEEEETTCG-----GGHHHHHH
T ss_pred -----------H--------------------------------HHHHHHHHhcCCEEEEEEECCcH-----HHHHHHHH
Confidence 1 34566789999999999985532 11223334
Q ss_pred cceeeecc--------CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE--------HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~--------~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... ..+..++.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 108 EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred HHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 44433222 113778999999999854
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=111.25 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=87.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeE-EEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
.++||+++|++|||||||+++|+.+.|...+.+|++..+.. ..... +..+.+.+||+++..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------------- 72 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE----------------- 72 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCch-----------------
Confidence 47999999999999999999999999998888998765533 33333 445889999888721
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.+ ..++..+++++|++++|||.... .....+.
T Consensus 73 -------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~ 104 (218)
T 4djt_A 73 -------KK------------------------------------AVLKDVYYIGASGAILFFDVTSR-----ITCQNLA 104 (218)
T ss_dssp -------GT------------------------------------SCCCHHHHTTCSEEEEEEETTCH-----HHHHTHH
T ss_pred -------hh------------------------------------chHHHHHhhcCCEEEEEEeCCCH-----HHHHHHH
Confidence 11 33456678999999999985432 1223444
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+........++.+++||.|+..
T Consensus 105 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 105 RWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp HHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 666666555555678999999999854
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=108.86 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=83.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+.. +. ...+.+.+||+++...+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~l~Dt~G~~~~----------------- 80 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-IT--KGNVTIKLWDIGGQPRF----------------- 80 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EE--ETTEEEEEEEECCSHHH-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EE--eCCEEEEEEECCCCHhH-----------------
Confidence 57999999999999999999999999998899999866642 33 33567789988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 81 -------------------------------------------~~~~~~~~~~~d~ii~v~D~~~~-----~s~~~~~~~ 112 (188)
T 1zd9_A 81 -------------------------------------------RSMWERYCRGVSAIVYMVDAADQ-----EKIEASKNE 112 (188)
T ss_dssp -------------------------------------------HTTHHHHHTTCSEEEEEEETTCG-----GGHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 22355678999999999985432 112233344
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... .....|+.+++||.|+..
T Consensus 113 ~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 113 LHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHhCcccCCCCEEEEEECCCCcc
Confidence 4433332 236678999999999854
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-12 Score=105.87 Aligned_cols=118 Identities=17% Similarity=0.285 Sum_probs=85.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+++...|...+.||++..+ ...+.+++..+.+.+||+++..++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------------- 67 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------------- 67 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT-----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 58999999999999999999999999999999987555 678899999999999988762111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.+...++++++++++|||...... ...+..|
T Consensus 68 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~ 99 (199)
T 2f9l_A 68 -------------------------------------------RRITSAYYRGAVGALLVYDIAKHLT-----YENVERW 99 (199)
T ss_dssp -------------------------------------------TCCCHHHHTTCSEEEEEEETTCHHH-----HHTHHHH
T ss_pred -------------------------------------------hhhhHHHHhcCCEEEEEEECcCHHH-----HHHHHHH
Confidence 2234567788999999998543221 1122335
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++..+++|.|+.
T Consensus 100 ~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 100 LKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCeEEEEEECcccc
Confidence 444333334567888999999984
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-12 Score=107.31 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=92.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|+.+.|...+.+|++..+ ...+.+++.........+.. ..+ .|-...+... .
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~-~ 79 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN-NNI----NSINDDNNVI-I 79 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC--------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccc-ccc----cccccccccc-c
Confidence 369999999999999999999999999999999997655 55566655443221111100 000 0000000000 0
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
. ..............+.+|||+|++.+..++..+++.+|++++|||..... ....+..
T Consensus 80 ~-----------------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~-----s~~~~~~ 137 (208)
T 3clv_A 80 T-----------------NQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSN-----TLDRAKT 137 (208)
T ss_dssp ----------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHH-----HHHHHHH
T ss_pred c-----------------cccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH-----HHHHHHH
Confidence 0 00000011123478999999999999999999999999999999854321 1123345
Q ss_pred cceeeeccCCCcccccccceeec
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITN 183 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~ 183 (330)
|+..+..... .|+.++++|.|
T Consensus 138 ~~~~i~~~~~--~piilv~NK~D 158 (208)
T 3clv_A 138 WVNQLKISSN--YIIILVANKID 158 (208)
T ss_dssp HHHHHHHHSC--CEEEEEEECTT
T ss_pred HHHHHHhhCC--CcEEEEEECCC
Confidence 5554443322 78899999998
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=105.54 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=81.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||++++..+.|. .+.||++.. ...+.+++ +.+.+||+++..++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~----------------- 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESL----------------- 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC---------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhH-----------------
Confidence 5789999999999999999999999887 778888733 44556665 77889998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 74 -------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~~ 105 (187)
T 1zj6_A 74 -------------------------------------------RSSWNTYYTNTEFVIVVVDSTDR-----ERISVTREE 105 (187)
T ss_dssp -------------------------------------------CGGGHHHHTTCCEEEEEEETTCT-----TTHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEeCCCH-----HHHHHHHHH
Confidence 23456678999999999985432 112233345
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... .....|+.+++||.|+..
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 106 LYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp HHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhchhhCCCeEEEEEECCCCcC
Confidence 4444332 235678999999999953
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-12 Score=113.71 Aligned_cols=117 Identities=53% Similarity=0.926 Sum_probs=90.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++...+
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------------ 216 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY------------------ 216 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG------------------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh------------------
Confidence 58999999999999999999999999999999999988888899999999999998872111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGW 161 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~ 161 (330)
..++..|++++|++++|||..... + ...+ ..|
T Consensus 217 ------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~--s---~~~~~~~~ 249 (332)
T 2wkq_A 217 ------------------------------------------DRLRPLSYPQTDVFLICFSLVSPA--S---FHHVRAKW 249 (332)
T ss_dssp ------------------------------------------TTTGGGGCTTCSEEEEEEETTCHH--H---HHHHHHTH
T ss_pred ------------------------------------------hHHHHHhccCCCEEEEEEeCCCHH--H---HHHHHHHH
Confidence 234567899999999999854321 1 1122 245
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+... .+..|+.++|||.|+.
T Consensus 250 ~~~~~~~-~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 250 YPEVRHH-CPNTPIILVGTKLDLR 272 (332)
T ss_dssp HHHHHHH-CTTSCEEEEEECHHHH
T ss_pred HHHHHhh-CCCCcEEEEEEchhcc
Confidence 4444332 2377889999999984
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-12 Score=118.70 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=67.3
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
..+.+|||+|.... .......+|++++|+|.+..+.+..+. ..+ .+.|+++|+||+|+.....
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~----~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----KGV----LELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----TTS----GGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----HhH----hhcCCEEEEECCCCcChhH------
Confidence 35678899984321 122347899999999987665543333 111 2359999999999964211
Q ss_pred hCCCCCcCHHHHHHHHHHhC------CeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 270 KNKQKPISFEQGEKLAKELK------AVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.....++........+ ..+++++||++|.|++++++.+...+-
T Consensus 235 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 235 ----ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ----HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0001112222211121 257999999999999999999987764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-12 Score=105.26 Aligned_cols=117 Identities=7% Similarity=0.037 Sum_probs=82.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCC-CCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+++|..+. |...+.+|++ .....+.+++ ..+.+||+++.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~------------------- 77 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQ------------------- 77 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCS-------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCC-------------------
Confidence 57899999999999999999999888 7788888886 3344555554 67889988861
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.+ +.++..+++++|++++|||.... .....+..
T Consensus 78 -----~~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~ 111 (190)
T 2h57_A 78 -----GRY------------------------------------RNLWEHYYKEGQAIIFVIDSSDR-----LRMVVAKE 111 (190)
T ss_dssp -----TTT------------------------------------GGGGGGGGGGCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----HHH------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHH
Confidence 111 33456788999999999985432 11123334
Q ss_pred cceeeeccCC---CcccccccceeeccCC
Q psy9997 161 WFWFISTEHS---PPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~g~~~~~~~ 186 (330)
|+..+..... ...++.+++||.|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 112 ELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp HHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 4444433322 5678899999999953
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-12 Score=103.90 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=81.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|..+.| ..+.+|++..+ ..+.+++ +.+.+||+++..+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~------------------ 77 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQES------------------ 77 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGG------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHh------------------
Confidence 579999999999999999999999998 67778887443 4556665 7788998887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..++..+++++|++++|||.... .....+..|
T Consensus 78 ------~------------------------------------~~~~~~~~~~~d~ii~v~D~~~~-----~s~~~~~~~ 110 (181)
T 2h17_A 78 ------L------------------------------------RSSWNTYYTNTEFVIVVVDSTDR-----ERISVTREE 110 (181)
T ss_dssp ------G------------------------------------TCGGGGGGTTCCEEEEEEETTCT-----TTHHHHHHH
T ss_pred ------H------------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 1 33456789999999999985432 111223334
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... .....++.+++||.|+..
T Consensus 111 ~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 111 LYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhChhhCCCeEEEEEECCCccc
Confidence 4333222 246678899999999853
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=101.25 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=81.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||++++..+. ...+.||++.. ...+.++ ...+.+||+++..++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~----------------- 75 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSL----------------- 75 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHH-----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhH-----------------
Confidence 57899999999999999999999988 77888898733 3455555 467889988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||..... ....+..|
T Consensus 76 -------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 107 (186)
T 1ksh_A 76 -------------------------------------------RSYWRNYFESTDGLIWVVDSADRQ-----RMQDCQRE 107 (186)
T ss_dssp -------------------------------------------HTTGGGGCTTCSEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEECcCHH-----HHHHHHHH
Confidence 234567889999999999854321 11233334
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 108 LQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhChhcCCCcEEEEEeCccCCC
Confidence 4433332 335688999999999854
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-12 Score=109.43 Aligned_cols=122 Identities=11% Similarity=0.011 Sum_probs=80.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCE-EEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|+.+.|...+.++..+.+. +.+++. .+.+.+||+++...++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~--------------- 68 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLR--------------- 68 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHH---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHH---------------
Confidence 5799999999999999999999999999988776544333 566654 6889999988732210
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|++++|++++|||......... .....
T Consensus 69 --------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~~~~ 101 (214)
T 2fh5_B 69 --------------------------------------------FQLLDRFKSSARAVVFVVDSAAFQREVK---DVAEF 101 (214)
T ss_dssp --------------------------------------------HHHHHHHGGGEEEEEEEEETTTHHHHHH---HHHHH
T ss_pred --------------------------------------------HHHHHHHHhhCCEEEEEEECCCcCHHHH---HHHHH
Confidence 1134457899999999998653111111 11111
Q ss_pred cceeeec--cCCCcccccccceeeccCCC
Q psy9997 161 WFWFIST--EHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 161 ~~~~~~~--~~~~~~~~~~~g~~~~~~~~ 187 (330)
|...+.. ...+..|+.++|||.|+...
T Consensus 102 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 102 LYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2222211 23456789999999999643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=6.7e-12 Score=101.93 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=78.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+|..+.|.. +.||++.. ...+.. ..+.+.+||+++...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~-------------------- 56 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDK-------------------- 56 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGG--------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChh--------------------
Confidence 699999999999999999999999864 67888732 333333 447788998887211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+ +.++..+++++|++++|||.... ........|+.
T Consensus 57 --------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~~~ 91 (164)
T 1r8s_A 57 --------I--------------------------------RPLWRHYFQNTQGLIFVVDSNDR-----ERVNEAREELM 91 (164)
T ss_dssp --------G--------------------------------HHHHHHHTTTCSEEEEEEETTCG-----GGHHHHHHHHH
T ss_pred --------h--------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHHHHH
Confidence 1 33455678999999999985432 11122334544
Q ss_pred eeec-cCCCcccccccceeeccCC
Q psy9997 164 FIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.. ...+..|+.++|||.|+..
T Consensus 92 ~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 92 RMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHhchhhcCCeEEEEEECcCCcC
Confidence 4333 2345778999999999954
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=100.03 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=80.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.+.. +.||++.. ...+.++ .+.+.+||+++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~-------------------- 76 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQ-------------------- 76 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCS--------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCC--------------------
Confidence 57999999999999999999999888864 67787632 3455555 467889988872
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++ +.++..+++++|++++|||..... .......|
T Consensus 77 ----~~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 111 (189)
T 2x77_A 77 ----TGV------------------------------------RPYWRCYFSDTDAVIYVVDSTDRD-----RMGVAKHE 111 (189)
T ss_dssp ----SSS------------------------------------CCCCSSSSTTCCEEEEEEETTCCT-----THHHHHHH
T ss_pred ----HhH------------------------------------HHHHHHHhhcCCEEEEEEeCCCHH-----HHHHHHHH
Confidence 111 334667899999999999854321 11222334
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ...+..|+.+++||.|+..
T Consensus 112 ~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 112 LYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp HHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred HHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 433322 2345778999999999964
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-11 Score=98.80 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=80.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++.. ...+.++ ...+.+||+++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~------------------ 63 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTS------------------ 63 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGG------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChh------------------
Confidence 4689999999999999999999999985 477787532 3455555 56788898876211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..++..+++++|++++|||..... .......|
T Consensus 64 ----------~--------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 96 (171)
T 1upt_A 64 ----------I--------------------------------RPYWRCYYSNTDAVIYVVDSCDRD-----RIGISKSE 96 (171)
T ss_dssp ----------G--------------------------------GGGGGGGCTTCSEEEEEEETTCCT-----THHHHHHH
T ss_pred ----------h--------------------------------hHHHHHHhccCCEEEEEEECCCHH-----HHHHHHHH
Confidence 1 334567889999999999854321 11222334
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+...... ..+..|+.+++||.|+..
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 97 LVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhchhhCCCEEEEEEECCCCcC
Confidence 4333222 236778999999999854
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=102.46 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=80.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.+ ..+.||++.. ...+.+++ ..+.+||+++...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~------------------ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTS------------------ 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHh------------------
Confidence 579999999999999999999998888 6677888733 34555654 7788998887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ +.++..+++++|++++|||.... .....+..|
T Consensus 75 ------~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~~ 107 (183)
T 1moz_A 75 ------I------------------------------------RPYWRCYYADTAAVIFVVDSTDK-----DRMSTASKE 107 (183)
T ss_dssp ------C------------------------------------CTTGGGTTTTEEEEEEEEETTCT-----TTHHHHHHH
T ss_pred ------H------------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 1 23456788999999999985432 111223344
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 108 LHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp HHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHHcChhhCCCeEEEEEECCCCCC
Confidence 4433332 246788999999999853
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=103.49 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=78.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|. .+.||++. ....+... .+.+.+||+++...+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~----------------- 86 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEYK--NICFTVWDVGGQDKI----------------- 86 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE-EEEEEEET--TEEEEEEECC----------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce-eEEEEEEC--CEEEEEEECCCCHhH-----------------
Confidence 5799999999999999999999998886 46777762 23344444 467889988872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||..... ....+..|
T Consensus 87 -------------------------------------------~~~~~~~~~~~d~iilv~D~~~~~-----s~~~~~~~ 118 (192)
T 2b6h_A 87 -------------------------------------------RPLWRHYFQNTQGLIFVVDSNDRE-----RVQESADE 118 (192)
T ss_dssp -------------------------------------------CTTHHHHHHTCCEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCCHH-----HHHHHHHH
Confidence 234556789999999999854321 11223344
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ...+..|+.+++||.|+..
T Consensus 119 l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 119 LQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhcccccCCCeEEEEEECCCCCC
Confidence 443322 2335678999999999954
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=112.38 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=36.3
Q ss_pred CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHH
Q psy9997 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNV 307 (330)
Q Consensus 246 ~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 307 (330)
..|+++|+||.|..-.. . .+....+.+..+++..+ .+++++||+...++.++
T Consensus 201 ~KPvi~v~N~~e~d~~~--------~-~~n~~~~~v~~~a~~~g-~~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPD--------G-RGNPQVEAVRRKALEEG-AEVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTT--------C-TTCHHHHHHHHHHHHHT-CEEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhcc--------c-chhhHHHHHHHHHHHcC-CeEEEeechhHHHHHHh
Confidence 47999999999853210 0 02345677888998887 68999999985444433
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.4e-12 Score=103.69 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=79.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.+ ..+.||++. ....+.++ .+.+.+||+++...+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~----------------- 73 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKI----------------- 73 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEET--TEEEEEEECSSCGGG-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEEC--CEEEEEEECCCCHHH-----------------
Confidence 468999999999999999999998765 456777763 24455666 467889988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..|++++|++++|||..... .......|
T Consensus 74 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~-----s~~~~~~~ 105 (181)
T 1fzq_A 74 -------------------------------------------RPYWRSYFENTDILIYVIDSADRK-----RFEETGQE 105 (181)
T ss_dssp -------------------------------------------HHHHHHHHTTCSEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhCCCCEEEEEEECcCHH-----HHHHHHHH
Confidence 233456889999999999854321 11122334
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ...+..|+.++|||.|+..
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 106 LTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp HHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHhChhhcCCCEEEEEECcCccc
Confidence 433322 2235678999999999964
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=126.27 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=51.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~ 260 (330)
.+.+|||+|+..|......+++.+|++++|+|+++..+++... .|..... .++|+++|+||+|+..
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH---TTCEEEEEEECHHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCeEEEEECCCcch
Confidence 3455666666777777777889999999999999998888876 5554332 3789999999999863
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-11 Score=120.26 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=50.8
Q ss_pred cccccccccccc-----------cccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQED-----------YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+.+|||+|... +......++..+|++++|+|+++....+... .|+..+... +.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--EDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--GGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--CCCEEEEEECCCcc
Confidence 467888988875 3344455678899999999998865555554 566666543 68999999999997
Q ss_pred CC
Q psy9997 260 ED 261 (330)
Q Consensus 260 ~~ 261 (330)
..
T Consensus 232 ~~ 233 (550)
T 2qpt_A 232 ET 233 (550)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-11 Score=103.22 Aligned_cols=117 Identities=10% Similarity=0.009 Sum_probs=77.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eE--EEEE-CCEEEEEEEeecCCceeEeEEEeecCCCcee
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AV--TVMI-GGEPYTLGLNFARTMQTIKCVVVGDGAVGKT 77 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~--~~~~-~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKT 77 (330)
+.+||+++|++|||||||++++.. .|... +|++..+ .+ ...+ ++..+.+++||+++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------------- 78 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPG----------------- 78 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCS-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCC-----------------
Confidence 478999999999999999986654 55444 4554333 22 3334 36778899999886
Q ss_pred EEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccC---CCCCCCCceEEEEeccccchhhhccc
Q psy9997 78 CLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR---PLSYPQTDVFLVCFGNMMNIRRSVDW 154 (330)
Q Consensus 78 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~---~~~~~~~~~~i~v~~~~~~~~~~~~~ 154 (330)
.++| ..+. ..||+++|++++|||.... ....
T Consensus 79 -------~~~~------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~ 112 (196)
T 3llu_A 79 -------QMDF------------------------------------FDPTFDYEMIFRGTGALIYVIDAQDD---YMEA 112 (196)
T ss_dssp -------SCCT------------------------------------TCTTCCHHHHHHTCSEEEEEEETTSC---CHHH
T ss_pred -------CHHH------------------------------------HhhhhhcccccccCCEEEEEEECCCc---hHHH
Confidence 1221 1122 5789999999999986653 2222
Q ss_pred ccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
...+..|+.... ...+..++.++|||.|+.
T Consensus 113 ~~~~~~~l~~~~-~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 113 LTRLHITVSKAY-KVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp HHHHHHHHHHHH-HHCTTCEEEEEEECGGGS
T ss_pred HHHHHHHHHHHH-hcCCCCcEEEEEeccccC
Confidence 233444554432 134678999999999974
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=102.91 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=67.9
Q ss_pred ccccccccccccccccccCc------cccCCCEEEEEEEcCChhhHhhhhhcchhhhh-hcCCCCcEEEEEeccCCCCCc
Q psy9997 190 RDRSLFDTAGQEDYDRLRPL------SYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT-HHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~-~~~~~~piilV~nK~Dl~~~~ 262 (330)
.++.+|||+|+......... .+.+ ++++.+.|.+...+..+....+..... ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 35789999999876443221 3355 777778776533222222101111111 112368999999999997532
Q ss_pred hhhHHhhhCCCCCcCHHH------------------HHHHHHHhCC-eeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 263 PTLEKLAKNKQKPISFEQ------------------GEKLAKELKA-VKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~------------------~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.. .+..... + ..+. ...+++.++. .+++++||++|.|++++++++.+.+-
T Consensus 188 ~~-~~~~~~l-~--~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK-ERHRKYF-E--DIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH-HHHHHHH-H--CHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH-HHHHHHH-h--ChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 10 0000000 0 0000 0011344442 37999999999999999999987653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-10 Score=95.39 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=43.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
|+++||+++|++|||||||++++....+...+.|+.. +.....+.+++ ..+.+||+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G 59 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPG 59 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCC
Confidence 8899999999999999999999998877666656543 34455666665 4688999887
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.4e-11 Score=108.16 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=63.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|....... ....+|++++|+|.+....+..+. ... .+.|.++|+||+|+.......
T Consensus 150 ~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~----~~~----~~~p~ivv~NK~Dl~~~~~~~----- 213 (341)
T 2p67_A 150 DVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK----KGL----MEVADLIVINKDDGDNHTNVA----- 213 (341)
T ss_dssp SEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC----HHH----HHHCSEEEECCCCTTCHHHHH-----
T ss_pred CEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH----Hhh----hcccCEEEEECCCCCChHHHH-----
Confidence 5678999996543322 357899999999997654322111 111 146899999999996431000
Q ss_pred CCCCCcCHHHHHHHHHHhC------CeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 271 NKQKPISFEQGEKLAKELK------AVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
...++.+......+ ..+++++||++|.|++++++.+...+.
T Consensus 214 -----~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 -----IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -----HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00112222222222 257899999999999999999987653
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-10 Score=105.21 Aligned_cols=123 Identities=14% Similarity=0.127 Sum_probs=81.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC--CCC-CCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN--KFP-SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTC 78 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~--~f~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTs 78 (330)
..+||+++|++|||||||+.++..+ .+. ..+.+|++..+. .+.+++ .+.+.+||++|...+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~-------------- 65 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVF-------------- 65 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHH--------------
Confidence 4689999999999999999999987 333 256778876554 344444 688999998873211
Q ss_pred EEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 79 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
.. ..+..++..+++++|++++|||.... . ....+
T Consensus 66 -----~~------------------------------------~~~~~~~~~~~~~ad~vi~V~D~t~~--~---s~~~l 99 (307)
T 3r7w_A 66 -----ME------------------------------------NYFTKQKDHIFQMVQVLIHVFDVEST--E---VLKDI 99 (307)
T ss_dssp -----HH------------------------------------HHHTTTHHHHHTTCSEEEEEEETTCS--C---HHHHH
T ss_pred -----hh------------------------------------hhhhhHHHHHhccCCEEEEEEECCCh--h---hHHHH
Confidence 00 01134567789999999999985432 1 11222
Q ss_pred CCcceeeec--cCCCcccccccceeeccCC
Q psy9997 159 GGWFWFIST--EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 159 ~~~~~~~~~--~~~~~~~~~~~g~~~~~~~ 186 (330)
..|...+.. ...+..|+.++|+|.|+..
T Consensus 100 ~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 100 EIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 223222211 2256789999999999864
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-11 Score=109.11 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=57.5
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.++||+|.... .......+|.+++|+|.++....+.+. ..+ ...|.++|+||+|+.....
T Consensus 168 ~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK~Dl~~~~~------- 229 (349)
T 2www_A 168 DIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTKSDGDLIVP------- 229 (349)
T ss_dssp SEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH-------
T ss_pred CEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEeeecCCCchh-------
Confidence 3456777774211 122356899999999998764332222 111 2458899999999964210
Q ss_pred CCCCCcCHHHHHHHHHHh---------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKEL---------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
. ......+.... ...+++.+||++|.|++++++.+...+
T Consensus 230 -----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 230 -----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp -----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 01111222111 125789999999999999999987754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-10 Score=92.88 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=69.2
Q ss_pred ccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcc---hhhhhhc--CCCCcEEEEEecc-CCCCCchhhHHhh
Q psy9997 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHH--CQKTPFLLVGTQI-DLREDAPTLEKLA 269 (330)
Q Consensus 196 D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~i~~~--~~~~piilV~nK~-Dl~~~~~~~~~~~ 269 (330)
+.+||++++.+|..||.++|++|+|.|.+|++-++ ..+.+ +..+.+. ..++|+++.+||. |+..+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-------- 178 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-------- 178 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--------
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--------
Confidence 46799999999999999999999999999886544 22122 2223222 2578999999995 67533
Q ss_pred hCCCCCcCHHHHHHHHH---HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 270 KNKQKPISFEQGEKLAK---ELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+..+...... -...+.+..|||++|+|+.+.+++++..+.++
T Consensus 179 ------ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 179 ------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp ------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred ------CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 33333222111 11347799999999999999999998877543
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-10 Score=105.81 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=76.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+ ||++..+. .+.. ..+.+.+||+++.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~-~~~~--~~~~l~i~Dt~G~-------------------- 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE-TVEY--KNISFTVWDVGGQ-------------------- 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE-EEEE--TTEEEEEEECC----------------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE-EEec--CcEEEEEEECCCC--------------------
Confidence 4689999999999999999999999886544 67654432 2333 3467889988861
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.| ..++..+++++|++++|||.... .....+..|
T Consensus 220 ----~~~------------------------------------~~~~~~~~~~ad~vilV~D~~~~-----~s~~~~~~~ 254 (329)
T 3o47_A 220 ----DKI------------------------------------RPLWRHYFQNTQGLIFVVDSNDR-----ERVNEAREE 254 (329)
T ss_dssp -------------------------------------------CCSHHHHHTTEEEEEEEEETTCS-----SSHHHHHHH
T ss_pred ----HhH------------------------------------HHHHHHHhccCCEEEEEEECCch-----HHHHHHHHH
Confidence 111 33456788999999999985421 111122233
Q ss_pred ceeee-ccCCCcccccccceeeccCC
Q psy9997 162 FWFIS-TEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~g~~~~~~~ 186 (330)
+.... ....+..|+.++|||.|+..
T Consensus 255 ~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 255 LMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhhhccCCCeEEEEEECccCCc
Confidence 33322 23346788999999999864
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=98.91 E-value=8.3e-10 Score=90.79 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=78.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.+||+++|++|||||||++++....+ ...+.+|..+.+...+.+++.+ +.+||+++.....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~-------------- 66 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREAS-------------- 66 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCS--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccch--------------
Confidence 358999999999999999999998764 3445555556667788888765 6799888721100
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
... . ...... ...+++++|++++|||...... +. ..
T Consensus 67 ----------~~~------------------------~---~~~~~~-~~~~~~~ad~~i~v~D~~~~~s--~~----~~ 102 (172)
T 2gj8_A 67 ----------DEV------------------------E---RIGIER-AWQEIEQADRVLFMVDGTTTDA--VD----PA 102 (172)
T ss_dssp ----------SHH------------------------H---HHHHHH-HHHHHHTCSEEEEEEETTTCCC--CS----HH
T ss_pred ----------hHH------------------------H---HHHHHH-HHHHHHhCCEEEEEEECCCCCC--HH----HH
Confidence 000 0 000000 1135789999999998543221 11 12
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+........|+.+++||.|+.
T Consensus 103 ~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 103 EIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEECccCC
Confidence 45444444444568899999999983
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.1e-10 Score=108.20 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=75.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEE---------EECCEEEEEEEeecCCceeEeEEEeec
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV---------MIGGEPYTLGLNFARTMQTIKCVVVGD 71 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ki~vvG~ 71 (330)
+.++||+++|++|||||||++++..+.|...+.+|++..+.... ..++..+.+.+||++|
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G----------- 107 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG----------- 107 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCc-----------
Confidence 45799999999999999999999999999999999987664322 1234467788998776
Q ss_pred CCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhh
Q psy9997 72 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRS 151 (330)
Q Consensus 72 ~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~ 151 (330)
.+.+ ..+...|++.++++++|||.+..
T Consensus 108 -------------~e~~------------------------------------~~~~~~~l~~~d~ii~V~D~s~~---- 134 (535)
T 3dpu_A 108 -------------QEIM------------------------------------HASHQFFMTRSSVYMLLLDSRTD---- 134 (535)
T ss_dssp -------------CCTT------------------------------------TTTCHHHHHSSEEEEEEECGGGG----
T ss_pred -------------HHHH------------------------------------HHHHHHHccCCcEEEEEEeCCCc----
Confidence 1111 33456678889999999985432
Q ss_pred cccccccCCcceeeeccCCCcccccccceeeccCCCcc
Q psy9997 152 VDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWV 189 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 189 (330)
.....|...+.... +..|+.++|||.|+.....
T Consensus 135 ----~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 135 ----SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp ----GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCC
T ss_pred ----hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccc
Confidence 23344554443332 3578899999999965443
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-09 Score=87.13 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=72.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.||+++|++|||||||+.++..+.+. ..+.++..+.+...+..++. .+.+||+++.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~---------------- 63 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGD---------------- 63 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSS----------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCcc----------------
Confidence 58999999999999999999988753 33444444555667777775 56789888621100
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ -.+.+......+++.+|++++++|.......... .+..|
T Consensus 64 -----------------------------------~--~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~ 103 (161)
T 2dyk_A 64 -----------------------------------K--WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY---EVAEY 103 (161)
T ss_dssp -----------------------------------S--CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH---HHHHH
T ss_pred -----------------------------------c--hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH---HHHHH
Confidence 0 0012234455678999999999986653222111 11122
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+.. ...|+.+++||.|+.
T Consensus 104 ~~~------~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 104 LRR------KGKPVILVATKVDDP 121 (161)
T ss_dssp HHH------HTCCEEEEEECCCSG
T ss_pred HHh------cCCCEEEEEECcccc
Confidence 211 456789999999985
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.3e-11 Score=97.47 Aligned_cols=129 Identities=11% Similarity=-0.033 Sum_probs=81.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+|..+.|...+.|++... ...+.+. .+.+||+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~---------------------- 54 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGF---------------------- 54 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCB----------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCc----------------------
Confidence 699999999999999999999999988887765322 2233333 5677877651
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCC-CceEEEEecccc--chhhh-cccccc--
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQ-TDVFLVCFGNMM--NIRRS-VDWNRK-- 157 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~-~~~~i~v~~~~~--~~~~~-~~~~~~-- 157 (330)
..+..||+.|++.+..+...|+++ +++++++|+... +.... ..|...
T Consensus 55 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~ 107 (190)
T 2cxx_A 55 ---------------------------GFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE 107 (190)
T ss_dssp ---------------------------SCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC
T ss_pred ---------------------------cccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCc
Confidence 013457888888889888999988 887776664322 21111 111111
Q ss_pred cCCcceeeeccCCCcccccccceeeccCC
Q psy9997 158 LGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
................|+.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 108 IPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 00000001111235678899999999853
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-09 Score=91.15 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=45.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
|+.+||+++|++|||||||+.+++.+.+...+.|++. +.....+.+++ ..+.+||+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G 63 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPG 63 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCC
Confidence 6789999999999999999999998776555555553 33455666665 5678898887
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-09 Score=97.02 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=76.2
Q ss_pred ccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 200 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 200 ~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
+++|......+++.++++++|+|++++. . .|..++.+...+.|+++|+||+|+... ....+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~-~~~~~l~~~~~~~p~ilV~NK~DL~~~-------------~~~~~ 116 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----G-SWLPGLHRFVGNNKVLLVGNKADLIPK-------------SVKHD 116 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----H-HCCTTHHHHSSSSCEEEEEECGGGSCT-------------TSCHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----c-cHHHHHHHHhCCCcEEEEEEChhcCCc-------------ccCHH
Confidence 3788888888899999999999999864 2 688888887778999999999999753 22333
Q ss_pred HHH----HHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 280 QGE----KLAKELKA--VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 280 ~~~----~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+.. .+++..+. ..++++||++|.|++++++.+....
T Consensus 117 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 117 KVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 333 34566662 1799999999999999999987654
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.5e-09 Score=101.40 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=44.1
Q ss_pred cccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 195 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
.||||+-.|..-....++-+|++++|.|...----+... .|. ...+ .++|.+++.||.|.....
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~-~a~~--~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMD-VCRM--RATPVMTFVNKMDREALH 168 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHH-HHHH--TTCCEEEEEECTTSCCCC
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHH-HHHH--hCCceEEEEecccchhcc
Confidence 344444555555555677899999999998765555544 443 3333 389999999999997654
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-09 Score=108.85 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=65.9
Q ss_pred cccccccccccc-------------cccccCccc-cCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEecc
Q psy9997 191 DRSLFDTAGQED-------------YDRLRPLSY-PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQI 256 (330)
Q Consensus 191 ~~~~~D~~g~e~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~ 256 (330)
.+.++|+||-.. .......++ ..+|++++|.|.++...-.+.. .++..+.. .+.|+++|.||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-~ll~~L~~--~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KIAKEVDP--QGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-HHHHHHCT--TCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-HHHHHHHh--cCCCEEEEEeCc
Confidence 456778887543 111222222 5789999999998654433331 23444433 378999999999
Q ss_pred CCCCCchhhHHhhhCCCCCcCHHHHHH--HHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 257 DLREDAPTLEKLAKNKQKPISFEQGEK--LAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 257 Dl~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
|+... .......... +....+..+++.+||++|.|++++++.+...
T Consensus 228 Dlv~~------------~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDE------------GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCT------------TCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCc------------chhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 99764 1111111100 0001122457789999999999999988763
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-10 Score=96.91 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=39.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC---CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~---~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+.++..+.|.. .+.+++...+ ....+.+||+++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G 64 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPG 64 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCC
Confidence 36899999999999999999999998865 3566665433 345677888876
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.4e-10 Score=93.80 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=33.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC---CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~---~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+.++..+.+.. .+.+++...+ ....+.+||+++
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G 100 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPG 100 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCC
Confidence 35799999999999999999999988755 2333332211 334566777766
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-09 Score=98.96 Aligned_cols=216 Identities=14% Similarity=0.051 Sum_probs=112.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCcccccc-------CCCCCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL-------RPLSYPQ 134 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l-------~~~~~~~ 134 (330)
..+|.++|.+|||||||+|++++.+- ..+|+.|.-+...-.+.+++ ..+++.||||.-.-... .....+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998763 34454444444334455555 45788999996322111 0124578
Q ss_pred CceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccc--cccccccccccccccCcccc
Q psy9997 135 TDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDR--SLFDTAGQEDYDRLRPLSYP 212 (330)
Q Consensus 135 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~D~~g~e~~~~~~~~~~~ 212 (330)
+|+++.|.|...-.........++..+...+. ..|...+-++.+... ..+.. ...+ ...+....+...+.-
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~-----~k~~~i~~nK~d~~g-i~i~~~~~~~~-l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLN-----KTPPDILIKKKEKGG-ISITNTVPLTH-LGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEET-----CCCCCEEEEECSSSC-EEEEESSCCSS-CCHHHHHHHHHHTTC
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhc-----cCChhhhhhHhhhhh-hhhhcchhhhh-ccHHHHHHHHHHhcc
Confidence 99999999865322222222223322221111 112223333433311 00000 0000 001111222222222
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhh-cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
..--++++.+++. +.+.+.. .. .....|.+++.||+|.... ++...+.+. .
T Consensus 223 t~kpv~~~~nv~e-ddl~d~~-------~~~~~~~~p~i~v~nKid~~~~-----------------eele~l~~~---~ 274 (376)
T 4a9a_A 223 NSAEIAFRCDATV-DDLIDVL-------EASSRRYMPAIYVLNKIDSLSI-----------------EELELLYRI---P 274 (376)
T ss_dssp CSEEEEECSCCCH-HHHHHHH-------TTTTCEEECEEEEEECGGGSCH-----------------HHHHHHTTS---T
T ss_pred cCCCeeecccCCH-HHHHHHH-------HHHHhhccceEEEEecccccCH-----------------HHHHHHhcc---c
Confidence 2233344444432 2222221 11 1125799999999997532 333333222 3
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.++++|+..+.|++++.+.+.+.+
T Consensus 275 ~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 275 NAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp TEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chhhhhhhhcccchhHHHHHHHHc
Confidence 478999999999999999887766
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-09 Score=99.55 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=59.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.++||+|...-. ......+|.+++++|.+..+..+.+. ..+. ..|.++|.||+|+...
T Consensus 149 ~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlNK~Dl~~~--------- 208 (337)
T 2qm8_A 149 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVNKADDGDG--------- 208 (337)
T ss_dssp CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEECCSTTCC---------
T ss_pred CEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEEchhccCc---------
Confidence 45677888864321 12346889999999986543322222 1111 2366788899997542
Q ss_pred CCCCCcCHHHHHHHHHHh---C------CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKEL---K------AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~---~------~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
........+.+.... . ..+++.+||+++.|++++++.+....
T Consensus 209 ---~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 209 ---ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ---HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111222233333321 1 24688999999999999999887654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=89.90 Aligned_cols=108 Identities=8% Similarity=-0.046 Sum_probs=74.1
Q ss_pred ccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhc---chhhhhhc--CCCCcEEEEEec-cCCCCCchhhHHhh
Q psy9997 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK---WVPEITHH--CQKTPFLLVGTQ-IDLREDAPTLEKLA 269 (330)
Q Consensus 196 D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~---~~~~i~~~--~~~~piilV~nK-~Dl~~~~~~~~~~~ 269 (330)
|.+||++.+.++..||.++|++|+|.|.+|++-++ ..+. ++..+.+. ..++|+++.+|| .|+..+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A-------- 263 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-------- 263 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--------
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--------
Confidence 45899999999999999999999999999987654 2212 22223222 258999999997 588543
Q ss_pred hCCCCCcCHHHHHHHHH---HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 270 KNKQKPISFEQGEKLAK---ELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+..+..+... -...+.+..+||.+|+|+.+.+++++..+.++
T Consensus 264 ------ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 264 ------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ------CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 33333222111 11346799999999999999999999888543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-08 Score=92.93 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=75.7
Q ss_pred cccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH
Q psy9997 199 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278 (330)
Q Consensus 199 g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~ 278 (330)
.+++|......+++.++++++|+|++++.+ .|..++.+...+.|+++|+||+|+... ....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~-------------~~~~ 117 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPR-------------SVKY 117 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCT-------------TCCH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCC-------------ccCH
Confidence 458888888888899999999999998773 577777777778999999999999753 2233
Q ss_pred HHHHH----HHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 279 EQGEK----LAKELKA--VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 279 ~~~~~----~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+...+ +++..+. ..++.+||++|.|++++++.+....
T Consensus 118 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 33333 3555553 2689999999999999999987654
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.5e-09 Score=88.63 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=37.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCC-CcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-TVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++|+.+.|.....+ +..+.........+ ..+.+||+++
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG 85 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPG 85 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCC
Confidence 368999999999999999999999887532222 11122222233333 5678888887
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-09 Score=89.51 Aligned_cols=120 Identities=12% Similarity=0.068 Sum_probs=74.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeE-EEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++|+.+.+ ..+.++.+..... ....+. .+.+||+++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G--------------------- 77 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPG--------------------- 77 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCC---------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCC---------------------
Confidence 57999999999999999999998874 4455555433322 222221 245666654
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCC---ceEEEEeccccchhhhccccccc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT---DVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
+....|+..+++.+..+...|++++ +++++++|......... ..+
T Consensus 78 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~---~~~ 125 (195)
T 3pqc_A 78 -----------------------------YGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD---LMM 125 (195)
T ss_dssp -----------------------------BSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---HHH
T ss_pred -----------------------------CccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHH---HHH
Confidence 1112345555666777777888877 88888887543322111 112
Q ss_pred CCcceeeeccCCCcccccccceeeccC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..|+.. ...|+.+++||.|+.
T Consensus 126 ~~~~~~------~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 126 VEWMKS------LNIPFTIVLTKMDKV 146 (195)
T ss_dssp HHHHHH------TTCCEEEEEECGGGS
T ss_pred HHHHHH------cCCCEEEEEEChhcC
Confidence 223221 156789999999984
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-08 Score=88.15 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=44.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCCc
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
|+.+||+++|++|||||||+++++.+.+ ...+.++........+..++. .+.+||++|.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~ 94 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGL 94 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCC
Confidence 5689999999999999999999998874 444555544444555566655 6789999883
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-09 Score=87.17 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=67.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++++.+.|...+.++.+... .....+++ .+.+||+++. |+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~--------~~~~~------- 84 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGY--------GFAKV------- 84 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCB--------CCCSS-------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCC--------Ccccc-------
Confidence 58999999999999999999999988777777765444 22333433 4677877761 11000
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCC---ceEEEEeccccchhhhccccccc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT---DVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
+...++.+..+...|++++ |++++|+|......... ..+
T Consensus 85 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~~ 126 (195)
T 1svi_A 85 -----------------------------------SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD---VQM 126 (195)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---HHH
T ss_pred -----------------------------------CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHH---HHH
Confidence 0011344566666777776 89999998554221111 011
Q ss_pred CCcceeeeccCCCcccccccceeeccCC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..|+. ....|+.+++||.|+..
T Consensus 127 ~~~~~------~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 127 YEFLK------YYGIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHH------HTTCCEEEEEECGGGSC
T ss_pred HHHHH------HcCCCEEEEEECcccCC
Confidence 12221 14567899999999853
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-08 Score=87.48 Aligned_cols=43 Identities=26% Similarity=0.507 Sum_probs=27.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
.+++++||+++|++|||||||++||+.+.|.+.|.||++..+.
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~ 51 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL 51 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEE
Confidence 4578899999999999999999999999999999999876553
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-08 Score=87.64 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=41.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCC-CCCCCCCC-c-ccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPT-V-FDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~t-v-~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++++... |...+.++ + .+.....+..++. .+.+||+++
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG 80 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPD 80 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcC
Confidence 46899999999999999999999877 66666664 3 2333445555553 467888876
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-08 Score=100.17 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=48.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
+.+.||||+..|.......++-+|++++|.|...--.-+... .|... .+. ++|.+++.||.|.....
T Consensus 69 iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a-~~~--~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRI-LFHAL-RKM--GIPTIFFINKIDQNGID 135 (638)
T ss_dssp CCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHH-HHHHH-HHH--TCSCEECCEECCSSSCC
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHH-HHc--CCCeEEEEeccccccCC
Confidence 456788888888777777888999999999998654434333 33333 332 78999999999987654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-08 Score=88.21 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=44.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
|+.+||+++|++|||||||+++++...+.....+++. +.....+...+.. +.+||+++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG 59 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPG 59 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCC
Confidence 8899999999999999999999998877555555554 3334455666654 78888876
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-08 Score=94.25 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCC
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFP 89 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~ 89 (330)
.-...+++.++|.+|+|||||++++++..+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~ 48 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQAS 48 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC----
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 3345689999999999999999999988653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-07 Score=84.71 Aligned_cols=124 Identities=10% Similarity=-0.054 Sum_probs=74.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC--CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+|+++|++|||||||+++++...+.. ....|..+........ ....+.+|||++....+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~-------------- 69 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPM-------------- 69 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCC--------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchh--------------
Confidence 46789999999999999999999888742 2222332222222222 34567889888721100
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.. + .+.+......+++++|++++|+|.+...... .
T Consensus 70 --------------~~--------------------l----~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~-------~ 104 (301)
T 1wf3_A 70 --------------DA--------------------L----GEFMDQEVYEALADVNAVVWVVDLRHPPTPE-------D 104 (301)
T ss_dssp --------------SH--------------------H----HHHHHHHHHHHTSSCSEEEEEEETTSCCCHH-------H
T ss_pred --------------hH--------------------H----HHHHHHHHHHHHhcCCEEEEEEECCCCCChH-------H
Confidence 00 0 0112344556789999999999865432111 1
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+........+..|..+++||.|+..
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 233222122224678899999999864
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=87.71 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=37.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|+.|+|||||+++++...+. ..+.+|..+...+.+.+.+.. .+.+||+++
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG 92 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPG 92 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcC
Confidence 589999999999999999999988763 334444455566667776542 678999887
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.6e-08 Score=84.90 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=40.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
++.+||+++|++|||||||+++++...+.....|.+ .+.....+...+ ..+.+||+++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG 61 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPG 61 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCC
Confidence 467999999999999999999999877643333322 222233334433 6778898887
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-07 Score=88.43 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=32.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC--CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~--f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++.+. +...+.+|..+.....+.+++. .+.+|||++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G 290 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAG 290 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCC
Confidence 5899999999999999999999875 3455555655666677778775 578899887
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=8.6e-07 Score=82.21 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=54.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCC-CC-CCCCceeecceEEEEECCce---------------eeeeeeecCCCcc
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKF-PS-EYVPTVFDNYAVTVMIGGEP---------------YTLGLFDTAGQED 123 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~ 123 (330)
....++.++|.+|+|||||++++++... .. .++.+......-.+.+.+.. ..+.+||++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457899999999999999999999765 33 33333322233345555421 3578999999643
Q ss_pred ccc-------cCCCCCCCCceEEEEec
Q psy9997 124 YDR-------LRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 124 ~~~-------l~~~~~~~~~~~i~v~~ 143 (330)
..+ ....+++.+|+++.+++
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd 124 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVR 124 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 12234578888888876
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-07 Score=81.67 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=40.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
||+++|++|||||||++++....+.....|++. +.....+.+++. .+.+||++|
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG 57 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPG 57 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCC
Confidence 899999999999999999998765444444443 444556666765 678898887
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-07 Score=83.91 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=38.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC-CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++... +..++..+-.+ .+...+.. ...+.+||+++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG 58 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPG 58 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCC
Confidence 5899999999999999999999865 44444322212 23334454 56688898887
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.4e-06 Score=83.63 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=36.0
Q ss_pred cCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 207 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 207 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
....++-+|++++|.|+..--.-+... .|.....+ ++|.++|.||.|....
T Consensus 102 v~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~~---~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 102 VERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANKY---GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHHH---TCCEEEEEECSSSTTC
T ss_pred HHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHHc---CCCeEEEEccccccCc
Confidence 334566799999999998655544444 34333333 7999999999998654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-07 Score=76.86 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=34.7
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
.++.+||+++|++|||||||+++|.++.|.. +.||+++.+
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~ 43 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY 43 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence 3578999999999999999999999999876 778876554
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=8.5e-07 Score=78.80 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=63.6
Q ss_pred cccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 205 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 205 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
......++++|+++.|+|+.++.+..+. .+.+...+.|.++|+||+|+... . ..+....+
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~~------------~--~~~~~~~~ 74 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNP------MIEDILKNKPRIMLLNKADKADA------------A--VTQQWKEH 74 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHCSSSCEEEEEECGGGSCH------------H--HHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCH------HHHHHHCCCCEEEEEECcccCCH------------H--HHHHHHHH
Confidence 3444567889999999999999887531 12222257999999999999642 0 01222333
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+..+ .+++.+||+++.|++++++.+...+
T Consensus 75 ~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 75 FENQG-IRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHTTT-CCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHhcC-CcEEEEECCCcccHHHHHHHHHHHH
Confidence 33444 6899999999999999998776654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-07 Score=73.58 Aligned_cols=39 Identities=41% Similarity=0.700 Sum_probs=34.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN 99 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~ 99 (330)
|+.+||+++|++|+|||||++++.++.+...+.+|.++.
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~ 39 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF 39 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee
Confidence 568999999999999999999999999888887776543
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.1e-07 Score=84.72 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=40.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++...+ ...+.+|..+.....+.+++.+ +.+||+++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G 281 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAG 281 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCc
Confidence 57999999999999999999997643 4445555555556677788765 47899887
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-07 Score=90.96 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=77.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+..||+++|+.++|||||+.+|....+...+.+++...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~---------------------------------------- 42 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIG---------------------------------------- 42 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTT----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEe----------------------------------------
Confidence 4679999999999999999999987665554444311100
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
...+.. +....+.+|||||++.|..++..+++.+|++++|+|..... ..+|
T Consensus 43 -------------------~~~v~~-~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~---------~~qt 93 (537)
T 3izy_P 43 -------------------AFLVSL-PSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV---------MKQT 93 (537)
T ss_dssp -------------------SCCBCS-SCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC---------CHHH
T ss_pred -------------------EEEEEe-CCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc---------cHHH
Confidence 000000 01225789999999999999999999999999999854321 1111
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+........|+.+++||.|+..
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred HHHHHHHHHcCCcEEEEEecccccc
Confidence 1122222234567889999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-06 Score=77.93 Aligned_cols=125 Identities=16% Similarity=0.017 Sum_probs=71.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC--CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.-+|+++|++|||||||+++++...+.. ....|...........+ ....+.+||+++....+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~-------------- 73 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPK-------------- 73 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCC--------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccc--------------
Confidence 35689999999999999999999887742 22222222222223332 14556788887721100
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.|+.. .+.+......+++++|++++|+|....... ....
T Consensus 74 -----------------------------------~~~~l-~~~~~~~~~~~l~~aD~il~VvD~~~~~~~-----~~~~ 112 (308)
T 3iev_A 74 -----------------------------------KSDVL-GHSMVEIAKQSLEEADVILFMIDATEGWRP-----RDEE 112 (308)
T ss_dssp -----------------------------------TTCHH-HHHHHHHHHHHHHHCSEEEEEEETTTBSCH-----HHHH
T ss_pred -----------------------------------cchhH-HHHHHHHHHHHhhcCCEEEEEEeCCCCCCc-----hhHH
Confidence 00000 012234456678899999999986532111 1111
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
-|+..+.. ...|+.+++||.|+.
T Consensus 113 ~~~~~l~~---~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 113 IYQNFIKP---LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHTGG---GCCCEEEEEECGGGS
T ss_pred HHHHHHHh---cCCCEEEEEECccCC
Confidence 12222222 356788999999985
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=69.16 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=40.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCC--Ccc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~--tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++++...+.....+ ++. +.....+.+++. .+.+||+++
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG 87 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPG 87 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCC
Confidence 468999999999999999999999888666555 232 333445566664 457898887
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-06 Score=69.61 Aligned_cols=39 Identities=31% Similarity=0.622 Sum_probs=33.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN 99 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~ 99 (330)
+..+||+++|++|+|||||+++|.++.+...+.|+.+..
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~ 39 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA 39 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence 467899999999999999999999999888777776543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-06 Score=74.06 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=37.8
Q ss_pred eeeEEEEcCCCCChhHHHHH-HHhCCCCCCC-------CCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLIS-YTTNKFPSEY-------VPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~-~~~~~f~~~~-------~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|.+|+|||||+++ +..+.+...+ .+|+...+ ...+..++..+.+.+||++|
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG 74 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCC
Confidence 68999999999999999998 5566666666 56765333 44555566777899999887
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=5.9e-06 Score=73.03 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=43.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCCc
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
|+.+||+++|++|||||||+++++...+.....|++. +.....+...+. .+.+||++|.
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~ 60 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGT 60 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCC
Confidence 8899999999999999999999998776544444442 333445555554 4567988873
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.7e-05 Score=69.78 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=39.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCCc
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
+.+||+++|++|||||||+++++.+.+. ..+.++........+..+ ...+.+||+++.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~ 97 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGL 97 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCC
Confidence 4789999999999999999999988763 333333322222233333 456788988873
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.2e-07 Score=82.81 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.3
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++++|.+|+|||||+|++.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999976
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.87 E-value=6.1e-06 Score=75.92 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=36.4
Q ss_pred eee-EEEEcCCCCChhHHHHHHHhCCCCCC-CCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIK-CVVVGDGAVGKTCLLISYTTNKFPSE-YVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~k-v~~lGd~~vGKtsl~~~~~~~~f~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++ |+++|.+|+|||||++++....+... +..+..+.....+.+++. .+.+||+.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G 235 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVG 235 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCC
Confidence 356 89999999999999999998776322 222333556677888874 457787765
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-06 Score=70.24 Aligned_cols=120 Identities=19% Similarity=0.260 Sum_probs=84.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeecceEEEEECCceeeeeeeecCCCcc-ccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-YDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~l~~~~~~~~~~ 137 (330)
+..+||+++|++|||||||+++|.+. .|...+.++..+.+...+.+++..+.+.+|||+|++. ++.+.+.||+.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45689999999999999999999963 3455555433344566888999999999999999877 67788999999999
Q ss_pred EEEEeccccchhhhcccccccCCcceeeecc-CCCcccccccceeeccC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+++|||.... .++ ..+..|...+... ..+..|+.++|+|.|+.
T Consensus 84 ~i~v~dv~~~--~s~---~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 84 YLIVYSITDR--ASF---EKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEETTCH--HHH---HHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCH--HHH---HHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 9999984431 122 2233444433332 23567889999999984
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.6e-07 Score=85.27 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.+++++|.+|+|||||+|++.+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999998763
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.1e-06 Score=76.84 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=34.7
Q ss_pred CCceeEeEEEeecC---------CCceeEEEEeecc---CCCCCCCCCce-eecc
Q psy9997 59 RTMQTIKCVVVGDG---------AVGKTCLLISYTT---NKFPSEYVPTV-FDNY 100 (330)
Q Consensus 59 ~~~~~~ki~vvG~~---------~~GKTsl~~~l~~---~~~~~~~~~t~-~~~~ 100 (330)
..+..+||+++|++ |||||||+++|++ ..|...+.||+ +..+
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~ 69 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDF 69 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHH
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccccccc
Confidence 34567999999999 9999999999999 66777888876 4444
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=5.9e-06 Score=70.12 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=87.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCcc-ccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-YDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~l~~~~~~~~~~ 137 (330)
...+||+++|++|||||||+++|.+.. |...+.++..+.+...+.+++..+.+.+|||+|++. +..+.+.||+.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999999644 455554433344566888999999999999999987 67788999999999
Q ss_pred EEEEeccccchhhhcccccccCCcceeeecc-CCCcccccccceeeccC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+++||+... ..++ ..+..|...+... ..+..|+.++|||.|+.
T Consensus 115 ~ilVydvt~--~~sf---~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 115 YLIVYSITD--RASF---EKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEETTC--HHHH---HHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred EEEEEECCC--HHHH---HHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 999998442 1122 1233344333322 23467899999999985
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=5.4e-06 Score=77.46 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF 88 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~ 88 (330)
.++++++|++|+|||||++.+.+..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 46799999999999999999988754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.8e-05 Score=69.40 Aligned_cols=82 Identities=4% Similarity=-0.041 Sum_probs=58.4
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...++++|+++.|.|+.+|.+..+.. . . + . +.|.++|.||+|+.... ..+....+.+.
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~--l-~-l---l-~k~~iivlNK~DL~~~~--------------~~~~~~~~~~~ 73 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYG--V-D-F---S-RKETIILLNKVDIADEK--------------TTKKWVEFFKK 73 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTT--S-C-C---T-TSEEEEEEECGGGSCHH--------------HHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChH--H-H-h---c-CCCcEEEEECccCCCHH--------------HHHHHHHHHHH
Confidence 34577899999999999998776532 1 1 1 1 78999999999997530 11222334444
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.+ .++ .+||+++.|++++++.+..
T Consensus 74 ~g-~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QG-KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred cC-CeE-EEECCCCcCHHHHHHHHHH
Confidence 45 577 9999999999998876543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.9e-06 Score=78.95 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=47.4
Q ss_pred eeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 112 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 112 ~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.+|||||++.|..++..+++.+|++++|+|..... ..++...+........|+.+++||.|+..
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~---------~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV---------MPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS---------CTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc---------cHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 5789999999999999999999999999999744321 11222222222234567888999999864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=2.3e-05 Score=72.02 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=33.8
Q ss_pred eeeEEEEcCCCCChhHHHHHH-HhCCCCCCCC--------CCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISY-TTNKFPSEYV--------PTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~-~~~~f~~~~~--------~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|+|||||+.++ ..+.|...+. +|+...+ ...+..++..+.+.+||+++
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG 104 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 104 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecc
Confidence 589999999999999999995 4556655543 4554332 33444567778889998877
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.9e-05 Score=66.92 Aligned_cols=58 Identities=12% Similarity=-0.051 Sum_probs=37.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++.+.+.....++.+... .....+. .....+.+||+++
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 88 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPG 88 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCC
Confidence 57999999999999999999998863222222222111 1223333 3345677888876
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.8e-05 Score=71.34 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=35.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC-CCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++|+++|.+|||||||++++....+... +..+..+.....+..+ ...+.+||+++
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G 223 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPG 223 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCC
Confidence 57899999999999999999998764321 2222111112222223 34567787776
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.66 E-value=3.4e-05 Score=70.62 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=36.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC-CCCC-CCcccceeEEEEECCE---------------EEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYV-PTVFDNYAVTVMIGGE---------------PYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~-~tv~~~~~~~~~~~~~---------------~~~~~~~~~~~ 60 (330)
.+||+++|.+|||||||+++++...+. .+++ +|+..+.. .+.+.+. +..+.+||+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAG 75 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCC
Confidence 379999999999999999999987743 2333 24433332 2334432 25678888887
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.63 E-value=5.8e-06 Score=75.37 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=34.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC-CCCC-CCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP-SEYV-PTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+|+++|.++||||||++++....+. ..|. +|+. .....+.+++ ...+.+||+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~-p~~g~v~~~~-~~~~~l~DtPG 215 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV-PNLGMVETDD-GRSFVMADLPG 215 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC-CCEEEEECSS-SCEEEEEEHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC-ceEEEEEeCC-CceEEEecCCC
Confidence 6889999999999999999876532 2233 3332 2222344443 13567787776
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.62 E-value=2.2e-05 Score=70.39 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=63.3
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
++.+.+.+..+.++|.+++|.|+.+|.+-.+..+.++..... .++|.++|.||+|+..+.. .....++
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~----------~~~~~~~ 141 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD----------TEDTIQA 141 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH----------HHHHHHH
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhh----------hHHHHHH
Confidence 445555556789999999999999776554433244433322 4789999999999976410 0000122
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHH
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFD 309 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 309 (330)
..++-+..| .+++.+||.++.|+++++.
T Consensus 142 ~~~~y~~~g-~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 142 YAEDYRNIG-YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHHHHHT-CCEEECCHHHHTTCTTTGG
T ss_pred HHHHHHhCC-CeEEEEecCCCCCHHHHHh
Confidence 333333445 6899999999999887765
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.59 E-value=3.8e-05 Score=64.32 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=30.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
..+|+++|.+|||||||+++++...|...+.++.+... ...+.+++ .+.+||+++
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G 81 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPG 81 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcC
Confidence 57899999999999999999998776555566665433 22333332 345666655
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=4.8e-05 Score=70.94 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=47.7
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+.+|||||++.|...+..+++.+|++++|+|...... ..+...|+....... ..++.++.||.|+..
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~-----~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP-----QPQTREHFVALGIIG--VKNLIIVQNKVDVVS 143 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS-----CHHHHHHHHHHHHHT--CCCEEEEEECGGGSC
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC-----cHHHHHHHHHHHHcC--CCCEEEEEECccccc
Confidence 3678999999999999999999999999999998554210 111112222221111 135788899999854
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.1e-05 Score=74.17 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=48.0
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-hhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-IRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
....+.+|||||++.|...+..+++.+|++++|+|.... +.....|..+.......... ....++.+++||.|+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEECGGGSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEcccCCC
Confidence 345789999999999999999999999999999986542 11111122221111111111 11124678899999854
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00021 Score=66.44 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+||+++|.++||||||+++++...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999765
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.6e-05 Score=71.54 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=46.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC--CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~--f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|.++||||||++++.... +...+..|..+.....+.+++.+ +.+||+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG 300 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAG 300 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCC
Confidence 3899999999999999999999875 45666667677777888888765 68999998
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=3.1e-05 Score=65.77 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=31.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD 38 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~ 38 (330)
+..||+++|++|||||||+.+|+...|...+.+++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~ 73 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG 73 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 3589999999999999999999998887666666643
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00015 Score=67.50 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=39.2
Q ss_pred CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH----HHHHHH----HhC--CeeEEEEee--ccCCCHHHHHHHHHH
Q psy9997 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ----GEKLAK----ELK--AVKYVECSA--LTQKGLKNVFDEAIL 313 (330)
Q Consensus 246 ~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~----~~~~~~----~~~--~~~~~e~Sa--~~~~~v~~~f~~l~~ 313 (330)
+.|+++|.||.|+.--++... .......++ .+.+.. +.+ ....+.+|+ ..+.|++++.+.+..
T Consensus 175 ~~p~~lV~tkpdlllLDEPts-----gLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADG-----EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTT-----CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred CCCeEEEEecCcccccCcccc-----cCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 689999999999852111000 112222333 333331 211 235788999 777789999999887
Q ss_pred Hhc
Q psy9997 314 AAL 316 (330)
Q Consensus 314 ~i~ 316 (330)
.+-
T Consensus 250 ~Lp 252 (413)
T 1tq4_A 250 DLP 252 (413)
T ss_dssp HSC
T ss_pred hCc
Confidence 763
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=97.45 E-value=1.9e-05 Score=75.57 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=48.0
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcE-EEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
.+|.+++|.|.+.... .+. ....+.. .+|+ .+|.||.|..... . .+.......+ .
T Consensus 213 ~pd~vllVvDa~~g~~--~~~--~a~~~~~---~~~i~gvVlNK~D~~~~~------------g----~~l~~~~~~g-~ 268 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CEA--QAKAFKD---KVDVASVIVTKLDGHAKG------------G----GALSAVAATK-S 268 (504)
T ss_dssp CCSEEEEEEETTCCTT--HHH--HHHHHHH---HHCCCCEEEECTTSCCCC------------T----HHHHHHHHHC-C
T ss_pred cCceEEEEEecccccc--HHH--HHHHHHh---hcCceEEEEeCCccccch------------H----HHHHHHHHhC-C
Confidence 6899999999986533 221 2222322 2675 8999999986431 1 1122222332 2
Q ss_pred e------------------EEEEeeccCCC-HHHHHHHHHHH
Q psy9997 292 K------------------YVECSALTQKG-LKNVFDEAILA 314 (330)
Q Consensus 292 ~------------------~~e~Sa~~~~~-v~~~f~~l~~~ 314 (330)
| .+.+||..|.| ++++++.+...
T Consensus 269 PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 269 PIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2 23479999999 99999888765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=9.9e-05 Score=64.95 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.++++++|++|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998743
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=3.9e-05 Score=75.00 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=47.1
Q ss_pred eeeeeecCCCccccccCCCCCCCCceEEEEeccccch-hhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 112 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI-RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 112 ~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.+|||||++.|..++..+++.+|++++|+|..... .+...... .......|+.+++||.|+..
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----------~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN----------ILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----------HHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----------HHHHcCCeEEEEeccccccc
Confidence 4889999999999999999999999999999865421 11111101 11124567889999999864
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=97.44 E-value=8.5e-05 Score=70.04 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=46.8
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhh-hcccccccCCcceeeeccCCCccc-ccccceeeccC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRR-SVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNIN 185 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~ 185 (330)
...+.+|||||+++|...+..+++.+|++++|+|....... .+. ...++...+........+ +.++.||.|+.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~---~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFE---KGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccC---CCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 45789999999999999999999999999999985532210 000 001111111111122344 67889999984
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=64.56 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=24.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
+..+|+++|.+|||||||+++++...+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 456899999999999999999998765
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=2.1e-05 Score=68.92 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=34.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~ 121 (330)
++++++|.+|+|||||+|++.+..... ..++.|..... .+..+ ..+.+|||||.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~ 154 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGI 154 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEE
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCc
Confidence 699999999999999999999876422 22222322221 22222 36889999998
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=97.38 E-value=8.2e-05 Score=70.73 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=38.0
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchh-hhcccccccCCcceeeeccCCCccc-ccccceeeccC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIR-RSVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNIN 185 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~ 185 (330)
...+.+|||||++.|...+..+++.+|++++|+|...... .++. ...+|...+........+ +.+++||.|+.
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~---~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE---RGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTS---TTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccC---CCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 3578999999999999999999999999999998654321 1111 112222222222223344 67889999984
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.36 E-value=8.5e-06 Score=73.01 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCC-CCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce
Q psy9997 18 CLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 96 (330)
Q Consensus 18 sl~~~~~~~~f~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~ 96 (330)
||+.||+.+.|. ..|.||+++.+...+..++ .+.+|++ +++|
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--------------------------qer~-------- 74 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--------------------------LHRK-------- 74 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--------------------------CCCS--------
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--------------------------cccc--------
Confidence 799999999999 8999999988764432222 6778853 1222
Q ss_pred eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCccccc
Q psy9997 97 FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLH 176 (330)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (330)
+.+++.||+++|++++|||..... .....+..|+..+.. ...|+.
T Consensus 75 ----------------------------~~l~~~~~~~ad~vilV~D~~~~~----~s~~~l~~~l~~~~~---~~~pii 119 (301)
T 1u0l_A 75 ----------------------------NLLTKPHVANVDQVILVVTVKMPE----TSTYIIDKFLVLAEK---NELETV 119 (301)
T ss_dssp ----------------------------CEETTTTEESCCEEEEEECSSTTC----CCHHHHHHHHHHHHH---TTCEEE
T ss_pred ----------------------------ceeeccccccCCEEEEEEeCCCCC----CCHHHHHHHHHHHHH---CCCCEE
Confidence 456778999999999999855321 112345566654432 467889
Q ss_pred ccceeeccCCC
Q psy9997 177 TLGFITNINPG 187 (330)
Q Consensus 177 ~~g~~~~~~~~ 187 (330)
+++||.|+...
T Consensus 120 lv~NK~DL~~~ 130 (301)
T 1u0l_A 120 MVINKMDLYDE 130 (301)
T ss_dssp EEECCGGGCCH
T ss_pred EEEeHHHcCCc
Confidence 99999999643
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=69.50 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=45.0
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccccch-hhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI-RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+.+|||||++.|...+..+++.+|++++|+|..... .+..+ ++..+. ....+..++.||.|+..
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-------~l~~~~---~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGE-------HMLILD---HFNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHH-------HHHHHH---HTTCCBCEEEECTTSSC
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHH-------HHHHHH---HcCCCEEEEEECCCccc
Confidence 57899999999999888999999999999999855321 11111 111111 12355677888888853
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00037 Score=68.42 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=33.9
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
....+.+|||||+++|...+..+++.+|++++|+|...
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 34678999999999999999999999999999998654
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.27 E-value=2.2e-05 Score=71.78 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=53.6
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-----hhhhcccccccCCcceeeecc-CCCcccccccceee
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-----IRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFIT 182 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 182 (330)
..+.+++|||+||++++.++..||++++++|+|||.+.- .........+...|+..+... ..+..|+.++|||.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 567899999999999999999999999999999985410 001122223344455444332 34678899999999
Q ss_pred ccC
Q psy9997 183 NIN 185 (330)
Q Consensus 183 ~~~ 185 (330)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 984
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.26 E-value=5.5e-05 Score=67.05 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=34.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~ 121 (330)
..++++++|.+|||||||+|++.+...... .+..+.... ..+..+ ..+.++||||.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVG---KELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeC---CCEEEEECcCc
Confidence 458999999999999999999998763111 111111111 122222 25789999998
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00047 Score=64.31 Aligned_cols=68 Identities=9% Similarity=-0.010 Sum_probs=45.3
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccccch--hhhcccccccCCcceeeeccCCCcccccccceeeccCCC
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI--RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
..+.+|||||++.|...+....+.+|++++|+|..... .+... ++..| ... ...++.++.||.|+...
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e---~l~~~----~~l--~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE---HLMAL----EIL--GIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH---HHHHH----HHT--TCCCEEEEEECTTSSCT
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH---HHHHH----HHc--CCCeEEEEEEccCCCCH
Confidence 57899999999999888888888999999999865321 11111 11111 111 11357788999998643
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00029 Score=65.83 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=33.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC-C-------CCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE-Y-------VPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~-~-------~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
+++|+++|++|||||||+.+++...+... + .+|+.... ...++..+....+.+|++.+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechh
Confidence 57899999999999999999998877322 1 12222111 11122234445677787766
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=67.61 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=46.1
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
....+.+|||||++.|...+..+++.+|++++|+|...... .+...|+...... ...++.+++||.|+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~------~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ------TQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC------HHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc------HHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 34578999999999999888899999999999998553210 0111121111111 1124677888988854
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=3.9e-05 Score=62.21 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=86.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.+||+++|++|+|||||+++|.++.+...+.++....+. ..+..++. .+.+|||+|++++..++..+++.+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35689999999999999999999999998887777765553 36666664 4679999999999999999999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+|||...... ..++..+.....+..|+.+++||.|+..
T Consensus 84 ~v~d~~~~~~---------~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 84 LVVAADDGVM---------PQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp EEEETTCCCC---------HHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred EEEECCCCCc---------HHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 9998443110 1111111122234567899999999854
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=67.29 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=33.8
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
....+.+|||||++.|...+..+++.+|++++|+|...
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence 34578999999999999999999999999999998654
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00024 Score=72.39 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 107 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 107 ~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
++..+.+++|||||+..|...+..+++.+|++++|+|......- . ...-|.. ......++.+++||.|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~--q---t~~~~~~----~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV--Q---TETVLRQ----ALGERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCH--H---HHHHHHH----HHHTTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCH--H---HHHHHHH----HHHcCCCeEEEEECCCcc
Confidence 34567899999999999999999999999999999986542110 0 0011111 112345677889998874
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00013 Score=65.95 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=54.3
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-----hhhhcccccccCCcceeeec-cCCCcccccccceee
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-----IRRSVDWNRKLGGWFWFIST-EHSPPMKLHTLGFIT 182 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 182 (330)
..+.+++|||+||+++++++.+||++++++|+||+-+.- .........+...|+..+.. ......++.++|||.
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 357899999999999999999999999999999964310 01112222233344444433 234678899999999
Q ss_pred ccC
Q psy9997 183 NIN 185 (330)
Q Consensus 183 ~~~ 185 (330)
|+.
T Consensus 245 DL~ 247 (327)
T 3ohm_A 245 DLL 247 (327)
T ss_dssp HHH
T ss_pred hhh
Confidence 984
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=1.5e-05 Score=71.37 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=30.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccC-CCCCCC--------CCceeecc-eEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTN-KFPSEY--------VPTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+++|++|+|||||++++.+. .+...+ .++..... ......++....+.+||++|+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 478899999999999999998765 444433 12222111 112222445667888888887
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00017 Score=71.99 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=41.4
Q ss_pred eeeeeeecCCCcc---ccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 111 YTLGLFDTAGQED---YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 111 ~~l~i~Dt~g~~~---~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.+|||||... .......|++++|++++|+|........ ...-|...+ .....++.++.||.|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~-----e~~~l~~~l---~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLG-----ERRYLENYI---KGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHH-----HHHHHHHHT---TTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchh-----HHHHHHHHH---HhhCCCEEEEEECcccc
Confidence 3689999999654 3455678899999999999854432111 111111111 11134578889999874
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=68.04 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=48.0
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee-eccCCCcccccccceeeccCC
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI-STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 186 (330)
....+.+|||||++.|......+++.+|++++|+|...... .|.... ........|+.+++||.|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~----------~~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE----------DRTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC----------HHHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch----------HHHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 45678999999999999888899999999999998654211 111111 111223567888999999853
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00034 Score=65.00 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=33.1
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
....+.+|||||++.|...+..+++.+|++++|+|...
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND 101 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC
Confidence 34578899999999998889999999999999998554
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00044 Score=64.39 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=47.2
Q ss_pred CceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCccc-ccccceeeccCC
Q psy9997 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNINP 186 (330)
Q Consensus 108 ~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 186 (330)
.....+.+|||||++.|...+..+++.+|++++|+|...... .+...|+..... ...+ +.++.||.|+..
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~------~qt~~~l~~~~~---~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM------PQTREHILLARQ---VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC------HHHHHHHHHHHH---TTCCCEEEEEECGGGCC
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc------HHHHHHHHHHHH---cCCCEEEEEEECccccC
Confidence 344578899999999999999999999999999998543211 111122222211 2344 567899998853
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00014 Score=65.99 Aligned_cols=77 Identities=12% Similarity=-0.041 Sum_probs=54.8
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-----hhhhcccccccCCcceeeec-cCCCcccccccceee
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-----IRRSVDWNRKLGGWFWFIST-EHSPPMKLHTLGFIT 182 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 182 (330)
..+.+++||++||++++.++..||++++++|+|||.+.- .........+...|+..+.. ......++.++|||.
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 457899999999999999999999999999999986510 00112222233344444433 234678899999999
Q ss_pred ccC
Q psy9997 183 NIN 185 (330)
Q Consensus 183 ~~~ 185 (330)
|+.
T Consensus 239 DL~ 241 (340)
T 4fid_A 239 DLF 241 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 984
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00072 Score=62.71 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=57.1
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccch-----hhhcccccccCCcceeeecc-CCCcccccccceeec
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI-----RRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITN 183 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 183 (330)
.+.+++|||+||++++.++..||++++++|+|||.+.-. ........+...|+..+... ..+..++.++|||.|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 378999999999999999999999999999999855411 01122334455566655443 446788999999999
Q ss_pred cC
Q psy9997 184 IN 185 (330)
Q Consensus 184 ~~ 185 (330)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 84
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=59.71 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=53.9
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH---
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK--- 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 286 (330)
...++|.+++|... +|..-.+..+.|+..... .++|.++|.||+|+..+. ..+..++|..
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~--------------~~~~~~~~~~~y~ 189 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDE--------------GMDFVNEQMDIYR 189 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHH--------------HHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCch--------------hHHHHHHHHHHHH
Confidence 46789999988665 454433322244433322 377889999999997531 1111333333
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHH
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDE 310 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~ 310 (330)
..| .+++.+||+++.|++++...
T Consensus 190 ~~G-~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 190 NIG-YRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp TTT-CCEEECBTTTTBTHHHHHHH
T ss_pred hCC-CcEEEEecCCCcCHHHHHHh
Confidence 445 68999999999999988764
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00026 Score=65.20 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=30.0
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
..+.+|||||+++|...+..+++.+|++++|+|
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 458999999999998888888899999999998
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0004 Score=67.54 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=39.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce-eecceEEE---EE-CCceeeeeeeecCCCcc
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTV---MI-GGEPYTLGLFDTAGQED 123 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~-~~~~~~~~---~~-~~~~~~l~i~Dt~g~~~ 123 (330)
...++|+|+|.+|+|||||+|++.+.........|. +....... .. ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456889999999999999999999876322222222 11111111 11 23445688999999854
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00013 Score=70.42 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=47.1
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
...+.+|||||++.|......+++.+|++++|+|....... ....-| ........|+.++.||.|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~-----~t~~~~----~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEP-----RTIKLM----EVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHH----HHHHTTTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCH-----HHHHHH----HHHHHcCCCEEEEEeCCCCc
Confidence 46789999999999999999999999999999986542110 000001 11122356788889999885
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00051 Score=68.15 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=76.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
..+|+++|++|+|||||+.+++..........++.+. ..
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g---------~~-------------------------------- 47 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---------TT-------------------------------- 47 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---------CC--------------------------------
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC---------cc--------------------------------
Confidence 4689999999999999999999765543333443100 00
Q ss_pred eccCCCCCCCCC---ceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 83 YTTNKFPSEYVP---TVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 83 l~~~~~~~~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
...+.+ ..+..+ .....+....+.+++|||+|++.|......+++.+|++++++|....... ..
T Consensus 48 ------~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~------qt 115 (665)
T 2dy1_A 48 ------TTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQV------GT 115 (665)
T ss_dssp ------SSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCH------HH
T ss_pred ------cccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccch------hH
Confidence 000000 000111 11222333467889999999999999999999999999999984432110 01
Q ss_pred CCcceeeeccCCCcccccccceeeccC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..++.... ....++.+++||.|+.
T Consensus 116 ~~~~~~~~---~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAE---RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHH---HTTCCEEEEEECGGGC
T ss_pred HHHHHHHH---HccCCEEEEecCCchh
Confidence 11111111 1245677889999885
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=61.01 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=34.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCC-CcccceeEEEEECCE---------------EEEEEEeecCCc
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-TVFDNYAVTVMIGGE---------------PYTLGLNFARTM 61 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~-tv~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 61 (330)
.+||.++|.+|||||||++++....+.....| |-.+.....+.+.+. +..+.+||+++.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 57899999999999999999998765333222 212222334444432 345788888873
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00024 Score=64.04 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=79.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCC---CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~---~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
||+++|++|||||||+.++.++.++. .+.||++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig-------------------------------------------- 36 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSN-------------------------------------------- 36 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCS--------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeee--------------------------------------------
Confidence 89999999999999999887654432 1334443
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccc---cCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR---LRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
..+.. + +..+.++||||+||++|+. +++.|||+++++++|||..... ......+
T Consensus 37 ----------------~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~---~~~~~~l 93 (331)
T 3r7w_B 37 ----------------PSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEY---INAITNL 93 (331)
T ss_dssp ----------------CCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCT---THHHHHH
T ss_pred ----------------eeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchH---HHHHHHH
Confidence 32221 1 2346799999999999974 4789999999999999966542 2222223
Q ss_pred CCcceeeeccCCCcccccccceeeccCC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..|+.... ...+..|+.++|+|.|+..
T Consensus 94 ~~~l~~~~-~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 94 AMIIEYAY-KVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp HHHHHHHH-HHCTTCEEEEECCCCCSSC
T ss_pred HHHHHHHh-hcCCCCcEEEEEECcccCc
Confidence 33443332 2356789999999999964
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=59.85 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+||.++|.+|||||||+++++...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=57.60 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE 31 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~ 31 (330)
..||+++|++|||||||+++++...|.+.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~ 54 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPR 54 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCC
Confidence 56999999999999999999999888543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00029 Score=57.91 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=94.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCC-----------CCceeecceE-EE-EECCceeeeeeeecCCCcccc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY-----------VPTVFDNYAV-TV-MIGGEPYTLGLFDTAGQEDYD 125 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~-----------~~t~~~~~~~-~~-~~~~~~~~l~i~Dt~g~~~~~ 125 (330)
.....+||+++|++|||||||+ +++.+.+...+ .||++..+.. .+ .+++..+.+.+|||+|++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456799999999999999999 56666666664 4566655543 44 677888999999999999999
Q ss_pred ccCCCCCCCCceEEEEeccccch-hhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 126 RLRPLSYPQTDVFLVCFGNMMNI-RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 126 ~l~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.++..|++++|++++|||..... .........+..|+..+ ....+..|+.++|||.|+.
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-GLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCTTSSCEEEEEECTTST
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-ccccCCCCEEEEEEchhcc
Confidence 99999999999999999866321 11222334455666655 2345778899999999985
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0024 Score=63.65 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=48.2
Q ss_pred CceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 108 ~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.+.+|||||+..|...+..+++.+|++++|+|....... . ...-| . .......+..++.||.|+..
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~--q---t~~~~-~---~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP--Q---SETVW-R---QANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcH--H---HHHHH-H---HHHHcCCCEEEEEeCCCccc
Confidence 4567899999999999998999999999999999986543110 0 00011 1 11123456778899988753
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00093 Score=69.34 Aligned_cols=72 Identities=8% Similarity=-0.026 Sum_probs=48.0
Q ss_pred ECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCccc-ccccceeecc
Q psy9997 106 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNI 184 (330)
Q Consensus 106 ~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~ 184 (330)
++.....+.+|||||++.|...+..+++.+|++|+|+|...... .+..+|+..... ...| +.+++||.|+
T Consensus 354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~------~QTrEhL~ll~~---lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM------PQTREHILLGRQ---VGVPYIIVFLNKCDM 424 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC------TTHHHHHHHHHH---HTCSCEEEEEECCTT
T ss_pred EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc------HHHHHHHHHHHH---cCCCeEEEEEeeccc
Confidence 33445678999999999999999999999999999998543210 011112211111 2344 5678899988
Q ss_pred CC
Q psy9997 185 NP 186 (330)
Q Consensus 185 ~~ 186 (330)
..
T Consensus 425 v~ 426 (1289)
T 3avx_A 425 VD 426 (1289)
T ss_dssp CC
T ss_pred cc
Confidence 63
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00087 Score=66.76 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=47.5
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+.+|||+|+..|......+++.+|++++|+|....... ....-|. .. .....|+.++.||.|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~-----~t~~~~~-~~---~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP-----QSETVWR-QA---EKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCH-----HHHHHHH-HH---HHTTCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcch-----hhHHHHH-HH---HHcCCCEEEEEECCCccc
Confidence 46789999999999999999999999999999986543210 0001111 11 113567788899999854
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0023 Score=58.37 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=55.4
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchh-----hhcccccccCCcceeeecc-CCCcccccccceeec
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIR-----RSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITN 183 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 183 (330)
.+.+++|||+||++++.++..||++++++|+|||.+.... .......+...|+..+... .....|+.++|||.|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999998554210 0022223344455544432 346788999999999
Q ss_pred cC
Q psy9997 184 IN 185 (330)
Q Consensus 184 ~~ 185 (330)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 84
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0011 Score=62.13 Aligned_cols=140 Identities=14% Similarity=0.026 Sum_probs=0.0
Q ss_pred EEEeecCCCceeEEEEeecc-----------------------------------------CCCCCCCCCceeecceEEE
Q psy9997 66 CVVVGDGAVGKTCLLISYTT-----------------------------------------NKFPSEYVPTVFDNYAVTV 104 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~-----------------------------------------~~~~~~~~~t~~~~~~~~~ 104 (330)
|+++|.+|+||||++.++.. ..-.............
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~--- 178 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF--- 178 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT---
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh---
Q ss_pred EECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeecc
Q psy9997 105 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 105 ~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
..+.+.|+||+|.....
T Consensus 179 ----~~~D~vIIDT~G~~~~~----------------------------------------------------------- 195 (432)
T 2v3c_C 179 ----KKADVLIIDTAGRHKEE----------------------------------------------------------- 195 (432)
T ss_dssp ----SSCSEEEEECCCSCSSH-----------------------------------------------------------
T ss_pred ----hCCCEEEEcCCCCcccc-----------------------------------------------------------
Q ss_pred CCCccccccccccccccccccccCcccc--CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCC-c-EEEEEeccCCCC
Q psy9997 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYP--QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-P-FLLVGTQIDLRE 260 (330)
Q Consensus 185 ~~~~~~~~~~~D~~g~e~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-p-iilV~nK~Dl~~ 260 (330)
............ .+|.+++|.|.+......... ....... | ..+|.||.|...
T Consensus 196 ----------------~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~-------~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 196 ----------------KGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQA-------KAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp ----------------HHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHH-------HHHHTTSCSCEEEEEECSSSCS
T ss_pred ----------------HHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHH-------HHHhhcccCCeEEEEeCCCCcc
Q ss_pred CchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE------------------eeccCCC-HHHHHHHH
Q psy9997 261 DAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC------------------SALTQKG-LKNVFDEA 311 (330)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~------------------Sa~~~~~-v~~~f~~l 311 (330)
....+..+....+ .++..+ |+..|.| +..+++.+
T Consensus 253 ----------------~~g~~l~~~~~~~-~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~ 305 (432)
T 2v3c_C 253 ----------------KGGGALSAVAETK-APIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKA 305 (432)
T ss_dssp ----------------TTHHHHHHHHHSS-CCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTT
T ss_pred ----------------chHHHHHHHHHHC-CCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHH
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0055 Score=57.02 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=28.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHH---hCCCCCCCCC--Ccccce
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYT---TNKFPSEYVP--TVFDNY 40 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~---~~~f~~~~~~--tv~~~~ 40 (330)
+.++|+++|+.++|||||+.++. .+.+..++.+ |+...|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~ 52 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGF 52 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEee
Confidence 35899999999999999999998 3344444445 654444
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0013 Score=61.63 Aligned_cols=69 Identities=4% Similarity=-0.091 Sum_probs=40.8
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
.+|.+++|.|.+....-.+.. ..+.+ .-.+..+|.||.|.... ...+.......+ .|
T Consensus 212 ~pd~vlLVvDA~~gq~a~~~a----~~f~~--~~~i~gVIlTKlD~~~~----------------gG~~ls~~~~~g-~P 268 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQAYNQA----LAFKE--ATPIGSIIVTKLDGSAK----------------GGGALSAVAATG-AP 268 (443)
T ss_dssp CCSEEEEEEEGGGGGGHHHHH----HHHHH--SCTTEEEEEECCSSCSS----------------HHHHHHHHHTTC-CC
T ss_pred cCceEEEEEeCCCchhHHHHH----HHHHh--hCCCeEEEEECCCCccc----------------ccHHHHHHHHHC-CC
Confidence 578999999987643322221 22222 12466799999998643 123445555565 67
Q ss_pred EEEEeeccCCCHHH
Q psy9997 293 YVECSALTQKGLKN 306 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~ 306 (330)
+..++. |+++++
T Consensus 269 I~fig~--Ge~vdd 280 (443)
T 3dm5_A 269 IKFIGT--GEKIDD 280 (443)
T ss_dssp EEEEEC--SSSTTC
T ss_pred EEEEEc--CCChHH
Confidence 776665 665543
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0045 Score=56.66 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=47.5
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchh-----hhcccccccCCcceeeecc-CCCcccccccceeec
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIR-----RSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITN 183 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 183 (330)
.+.+.+|||+||++++.++..||++++++|+|||.+.-.. .......+...|+..+... .....|+.++|||.|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999998654110 0011222333444444332 346788999999999
Q ss_pred cC
Q psy9997 184 IN 185 (330)
Q Consensus 184 ~~ 185 (330)
+.
T Consensus 280 L~ 281 (362)
T 1zcb_A 280 LL 281 (362)
T ss_dssp HH
T ss_pred hh
Confidence 84
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0049 Score=61.36 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=47.0
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+.+|||+|+..|......+++.+|++++|+|........ ...-|. .+. ....++.++.||.|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~-----~~~~~~-~~~---~~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQ-----TETVWR-QAT---TYGVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHH-----HHHHHH-HHH---HTTCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHH-----HHHHHH-HHH---HcCCCEEEEEECCCccc
Confidence 467899999999999888899999999999999865432100 001111 111 12567788899999854
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0099 Score=54.88 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=39.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCE---------------EEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGE---------------PYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~---------------~~~~~~~~~~~ 60 (330)
..++.+||.+|||||||++.++.... ..+++.|..+.....+.+.+. +..+.+||+++
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 46899999999999999999998664 333444444444455555542 13467777776
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=95.99 E-value=0.011 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.++++|++|+|||||+..+..-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999988653
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.00014 Score=69.09 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=21.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++|+++|.+|+||||+.++|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988654
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0053 Score=55.90 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY 32 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~ 32 (330)
..+|+++|++|||||||+++++...|.+..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~ 60 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRG 60 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 468999999999999999999998875433
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0039 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
..+|+++|.+|||||||+.+++...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999997654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0087 Score=53.23 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
..+|+++|++|+|||||+++++...+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~l 50 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFL 50 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcC
Confidence 468999999999999999999988763
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0036 Score=58.54 Aligned_cols=171 Identities=9% Similarity=-0.036 Sum_probs=0.0
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
++++|++|+||||++ ..+...+-+....++++-.+.
T Consensus 100 I~lvG~~GsGKTTt~--------------------------------------------~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTA--------------------------------------------GKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEECCCTTSCHHHHH--------------------------------------------HHHHHHHHHTTCCEEEEEECC
T ss_pred EEEECCCCCCHHHHH--------------------------------------------HHHHHHHHHcCCeEEEEecCc
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc----------cccccCccccCCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED----------YDRLRPLSYPQTD 215 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~----------~~~~~~~~~~~~d 215 (330)
.+..-............-..........+................++-+.||+|... ...+.... ..+
T Consensus 136 ~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~--~pd 213 (433)
T 3kl4_A 136 YRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL--KPD 213 (433)
T ss_dssp SCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH--CCS
T ss_pred cchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh--CCc
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
.+++|.|.+....-.++.+.+.+.+ .+..+|.||.|... ....+.......+ .|+..
T Consensus 214 ~vlLVlDa~~gq~a~~~a~~f~~~~------~~~gVIlTKlD~~a----------------~~G~als~~~~~g-~Pi~f 270 (433)
T 3kl4_A 214 DVILVIDASIGQKAYDLASRFHQAS------PIGSVIITKMDGTA----------------KGGGALSAVVATG-ATIKF 270 (433)
T ss_dssp EEEEEEEGGGGGGGHHHHHHHHHHC------SSEEEEEECGGGCS----------------CHHHHHHHHHHHT-CEEEE
T ss_pred ceEEEEeCccchHHHHHHHHHhccc------CCcEEEEecccccc----------------cchHHHHHHHHHC-CCEEE
Q ss_pred EeeccCCCHHHH
Q psy9997 296 CSALTQKGLKNV 307 (330)
Q Consensus 296 ~Sa~~~~~v~~~ 307 (330)
++. |++++++
T Consensus 271 ig~--Ge~v~dL 280 (433)
T 3kl4_A 271 IGT--GEKIDEL 280 (433)
T ss_dssp EEC--CSSSSCE
T ss_pred EEC--CCChHhC
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.015 Score=56.14 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=24.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
..+|+++|..|+|||||+++++...+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 468999999999999999999998873
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.016 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+|++.++|.+|+|||||++.++.-.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999988643
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.016 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-.++++|.+|+|||||+..+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998763
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0019 Score=57.41 Aligned_cols=172 Identities=10% Similarity=-0.085 Sum_probs=0.0
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
++++|.+|+||||++ ..+...+-+...-++++-.+.
T Consensus 101 i~i~G~~G~GKTT~~--------------------------------------------~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTA--------------------------------------------GKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp EEEECSSCSSTTHHH--------------------------------------------HHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCHHHHH--------------------------------------------HHHHHHHHHCCCeEEEEecCC
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc--cccccC------ccccCCCEE
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED--YDRLRP------LSYPQTDVF 217 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~--~~~~~~------~~~~~~d~~ 217 (330)
.+......+.......--.+........+......-.........++.+.||+|... ...... .....+|.+
T Consensus 137 ~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~v 216 (297)
T 1j8m_F 137 YRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEV 216 (297)
T ss_dssp SSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEE
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|.|.+.. . ..+..+.......| ..+|.||.|... ....+..++...+ .++..+
T Consensus 217 llVvda~~g------~-~~~~~~~~~~~~~~i~gvVlnk~D~~~----------------~~g~~~~~~~~~~-~pi~~i 272 (297)
T 1j8m_F 217 TLVIDASIG------Q-KAYDLASKFNQASKIGTIIITKMDGTA----------------KGGGALSAVAATG-ATIKFI 272 (297)
T ss_dssp EEEEEGGGG------G-GHHHHHHHHHHTCTTEEEEEECGGGCT----------------THHHHHHHHHTTT-CCEEEE
T ss_pred EEEeeCCch------H-HHHHHHHHHHhhCCCCEEEEeCCCCCc----------------chHHHHHHHHHHC-cCEEEE
Q ss_pred eeccCCCHHHH
Q psy9997 297 SALTQKGLKNV 307 (330)
Q Consensus 297 Sa~~~~~v~~~ 307 (330)
+ .|++++++
T Consensus 273 ~--~Ge~v~dl 281 (297)
T 1j8m_F 273 G--TGEKIDEL 281 (297)
T ss_dssp E--CSSSTTCE
T ss_pred e--CCCChhhc
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0051 Score=56.15 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=71.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCcee---------------ecceE---------------------------
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---------------DNYAV--------------------------- 102 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~---------------~~~~~--------------------------- 102 (330)
+|+++|++|+|||||++++++..|......++. ..+..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRET 115 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999887433322210 00000
Q ss_pred -----------EEEE-CCceeeeeeeecCCCccc-------------cccCCCCCCCCceEEEEeccccchhhhcccccc
Q psy9997 103 -----------TVMI-GGEPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK 157 (330)
Q Consensus 103 -----------~~~~-~~~~~~l~i~Dt~g~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~ 157 (330)
.+.+ ......+.+|||||...+ ..+...|++++|+++++++........
T Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~------ 189 (360)
T 3t34_A 116 GRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT------ 189 (360)
T ss_dssp CTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG------
T ss_pred CCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC------
Confidence 1111 112346899999999876 566778999999999998754322111
Q ss_pred cCCcceeeeccCCCcccccccceeeccC
Q psy9997 158 LGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..|............+...+.||.|+.
T Consensus 190 -~~~~~l~~~~~~~~~~~i~V~nK~Dl~ 216 (360)
T 3t34_A 190 -SDAIKISREVDPSGDRTFGVLTKIDLM 216 (360)
T ss_dssp -CHHHHHHHHSCTTCTTEEEEEECGGGC
T ss_pred -HHHHHHHHHhcccCCCEEEEEeCCccC
Confidence 122222222223345677778888874
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.02 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.+++++|.+|+|||+|+..++..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999887754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.021 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+|+|.+|||||+|+.+++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999998754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.022 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-.++++|.+|+|||||+..+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.026 Score=45.84 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=21.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++...+..
T Consensus 1 M~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6777899999999999999988865
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.0041 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.1
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999888764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.033 Score=46.26 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.--++++|.+|+|||+|+.+++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999998853
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.033 Score=44.76 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|...-|++.|.+|+|||++...+...
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 55567999999999999999998864
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.038 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++..++..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 7778899999999999999988865
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.042 Score=45.42 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++...+..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5677899999999999999999875
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.063 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.++|+++|.++||||+|+++++...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 4689999999999999999998765
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.035 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||||+..+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.04 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+++..+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999998864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.065 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.|.|||.+|+|||||+.++....
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 57899999999999999998653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.041 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|++|+|||+++..+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.04 Score=44.82 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+++..+...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.043 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-++++|.+|+|||+++.++...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.044 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
--++++|.+|+|||+++..+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999988764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.0069 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.044 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.++++|.+|+|||+|+..++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.048 Score=43.39 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|++.|.+|+|||++...+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.048 Score=45.32 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
++++|.+|+|||+|++.++.-
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999988753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.061 Score=44.27 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
...++++|.+|+|||+++..+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999987654
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.11 Score=47.49 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=38.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCC-CCCCCCCcccceeEEEEECCEEEEEEEeecCCc
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f-~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
-.|.+||-++||||||+++++...- ..+|+.|-.+.....+.+.+.. +.+.|+++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl 129 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGI 129 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGG
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCc
Confidence 3699999999999999999986432 2334444444444556666654 466787773
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.046 Score=43.99 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChhHHHHHHH
Q psy9997 5 KCVVVGDGAVGKTCLLISYT 24 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~ 24 (330)
-++++|.+|+|||+|+..+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999743
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.0085 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999988763
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.07 Score=43.14 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+...|++.|.+|+|||++...+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.059 Score=42.97 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
-+.++|+.|+|||+|++-++...
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999988755
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.066 Score=48.55 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
...|.++|.+|+|||||+++++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.073 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
...|+++|.+|+|||++...+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.073 Score=44.21 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
...|.++|.+|+|||+|+..+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999987764
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.065 Score=44.62 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++|++.|.+|+|||++..++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.065 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++|++.|.+|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.069 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.+|.++|.+|+|||++...+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.067 Score=44.07 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|+++|.+|+|||++...+...
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.065 Score=42.77 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
..|+++|.+|+|||++...+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999888763
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.065 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+++.|+|.+|+|||||++.++...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 569999999999999999988653
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.084 Score=42.24 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.-|++.|.+|+|||++..++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999886
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.081 Score=42.37 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
..++++|.+|+|||++...+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999988765
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.052 Score=43.52 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|++|+|||+++..+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.078 Score=42.73 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-.|++.|.+|+|||++...+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345899999999999999988753
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=92.38 E-value=0.011 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++|++|+|||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.08 Score=43.60 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.+|+++|.+|+|||++...+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999886
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.012 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
-++++|++|+|||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46799999999999999987753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.06 Score=43.45 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+|+..++..
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999888753
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.073 Score=42.22 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChhHHHHHH
Q psy9997 5 KCVVVGDGAVGKTCLLISY 23 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~ 23 (330)
-|++.|.+|+|||++...+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999988
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.076 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|++.|.+|+|||++...+...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.086 Score=43.14 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.|++.|.+|+|||++...+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.08 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
--++++|.+|+|||+++..+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998865
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.012 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.1
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
--++++|++|+|||||++++.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999998864
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.014 Score=47.57 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.++++|++|+||||+++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999988764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.013 Score=48.42 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.4
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999988764
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.087 Score=47.82 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
..+|+++|.+|||||||+.++...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=92.06 E-value=0.083 Score=42.93 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-++++|.+|+|||+++..+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.098 Score=44.70 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+.++|++.|.+|+|||++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.088 Score=42.68 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+|+.+++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999998754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.093 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
..++++|.+|+|||+++..+..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.078 Score=42.70 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=16.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++...+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999875
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.096 Score=42.29 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-.|+++|.+|+|||++...+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.014 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
++++|++|+|||||++.+.+-
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999988764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.088 Score=43.28 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
++.++|.+|+|||+++..++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999887653
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.11 Score=42.48 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+...|++.|.+|+|||++...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998864
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=91.86 E-value=0.094 Score=42.06 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+|+++|.+|+|||++...+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.019 Score=46.34 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.7
Q ss_pred EEEeecCCCceeEEEEeec
Q psy9997 66 CVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~ 84 (330)
++++|++|+|||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6799999999999998754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.11 Score=42.21 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
..-|++.|.+|+|||++...+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.1 Score=43.16 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
...+.++|.+|+|||+|+..+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988765
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=91.73 E-value=0.12 Score=42.54 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+.+.|++.|.+|+|||++...+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.18 Score=44.06 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=25.9
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
.+.++|.+|+|||||+..++.-. .|+ .-.+.+++.++
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~-----~p~-----~G~I~~~G~~i 72 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL-----KPS-----SGRILFDNKPI 72 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-----CCS-----EEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-----CCC-----CeEEEECCEEC
Confidence 47899999999999998876522 222 34566666654
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.016 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988774
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=91.60 E-value=0.12 Score=41.89 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.|++.|.+|+|||++...+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.11 Score=42.06 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=19.9
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|.. .|++.|.+|+|||++...+..
T Consensus 1 M~~-~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 1 MAP-KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp -CC-SEEEECSTTSSHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHH
Confidence 443 499999999999999988875
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.017 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++|++|+||||+++.+.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999998765
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.1 Score=42.95 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-|+++|.+|+|||++...+...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999887653
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.1 Score=43.77 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|++|+|||+++..+...
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.053 Score=43.85 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.+.++|.+|+|||+|+..++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 330 | ||||
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 2e-32 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 6e-21 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 8e-17 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 1e-25 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 8e-19 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 6e-12 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 4e-25 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-13 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 1e-11 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 8e-25 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 6e-15 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 2e-11 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-24 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 1e-15 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 3e-12 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-24 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 4e-16 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 3e-12 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 3e-23 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 3e-16 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-11 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 2e-22 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 1e-13 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 7e-11 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 3e-21 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-15 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 1e-07 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 4e-21 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 5e-16 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 7e-12 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 6e-21 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 2e-14 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 3e-20 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 1e-15 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 9e-10 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 6e-19 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 4e-15 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 4e-08 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 3e-18 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 1e-15 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 1e-07 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 5e-18 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 5e-17 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-08 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 1e-17 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 1e-14 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 6e-09 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 7e-17 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 1e-15 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 9e-10 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 2e-16 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-12 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-11 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 1e-15 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 2e-14 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-09 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 2e-15 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 2e-11 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 4e-08 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 2e-15 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 7e-15 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 3e-08 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 3e-15 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-11 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 3e-10 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 3e-15 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-14 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-09 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 6e-15 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 5e-12 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-09 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 7e-15 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 3e-13 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 3e-09 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 1e-14 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-11 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 5e-09 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 2e-14 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 7e-11 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 1e-07 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 5e-14 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 5e-10 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-04 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 7e-14 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 1e-10 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 1e-06 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 2e-13 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 6e-11 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 4e-04 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 3e-13 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 3e-12 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 3e-13 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 3e-09 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 3e-06 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 3e-13 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 1e-10 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 4e-07 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 6e-13 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 7e-10 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 4e-07 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 1e-12 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 4e-09 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 2e-08 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 4e-12 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 2e-08 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 2e-05 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 6e-12 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 3e-10 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 5e-06 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 8e-12 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 7e-09 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-05 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 6e-11 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 7e-09 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 1e-05 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-10 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 5e-09 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-07 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 1e-08 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 2e-06 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 7e-05 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 1e-08 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 2e-05 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 1e-04 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-08 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 5e-07 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 6e-06 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 7e-08 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 7e-08 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 0.002 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 7e-08 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 5e-06 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-04 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 8e-08 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 1e-06 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 9e-08 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 8e-06 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-05 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 1e-07 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 2e-06 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-07 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-05 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 6e-05 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 4e-07 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 7e-05 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-04 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 9e-07 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-05 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-05 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-06 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-05 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-06 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-05 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 3e-06 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 1e-04 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 6e-06 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 9e-06 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 4e-05 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 2e-05 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 3e-04 |
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (292), Expect = 2e-32
Identities = 124/146 (84%), Positives = 130/146 (89%)
Query: 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 244
G LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC
Sbjct: 46 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Query: 245 QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304
KTPFLLVGTQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGL
Sbjct: 106 PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGL 165
Query: 305 KNVFDEAILAALEPPEPPKKRKCVLL 330
KNVFDEAILAALEPPEP K R+CVLL
Sbjct: 166 KNVFDEAILAALEPPEPKKSRRCVLL 191
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.6 bits (213), Expect = 6e-21
Identities = 82/105 (78%), Positives = 85/105 (80%), Gaps = 2/105 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKLGGWFW 163
QEDYDRLRPLSYPQTDVFLVCF + + +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.4 bits (184), Expect = 8e-17
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 98.7 bits (245), Expect = 1e-25
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L ++DTAGQE
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ + Y ++ +
Sbjct: 63 RFRTITTAYYRGAMGIILVY 82
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.2 bits (197), Expect = 8e-19
Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 18/152 (11%)
Query: 165 ISTEHSPPMKLHTLGFITNINPGWVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVC 220
+ P + T+G I + + ++DTAGQE + + Y ++
Sbjct: 22 FVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81
Query: 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280
+ + +F N+K+ + H + LLVG + D+ + ++ +Q
Sbjct: 82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-------------TRVVTADQ 128
Query: 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GE LAKEL + ++E SA + +F
Sbjct: 129 GEALAKELG-IPFIESSAKNDDNVNEIFFTLA 159
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.9 bits (147), Expect = 6e-12
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L +
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 55
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 98.0 bits (243), Expect = 4e-25
Identities = 23/111 (20%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 123 DYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
+ + Y + ++ + + + S + + +T +
Sbjct: 67 RFRTITSSYYRGSHGIIIVY--DVTDQESFNGVKMWLQEIDRYATSTVLKL 115
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (161), Expect = 1e-13
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + + Y + ++ + V SF VK + LLVG
Sbjct: 59 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ DL++ +AK + ++E SAL +++ F
Sbjct: 119 NKCDLKDKRVVEYDVAKEFADAN-------------KMPFLETSALDSTNVEDAFLTMAR 165
Query: 314 AALEPPEPPKKRK 326
E +
Sbjct: 166 QIKESMSQQNLNE 178
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.6 bits (146), Expect = 1e-11
Identities = 14/53 (26%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L +
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 59
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.0 bits (240), Expect = 8e-25
Identities = 90/134 (67%), Positives = 105/134 (78%)
Query: 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 244
G L+DTAGQEDYDRLRPLSYP TDVFL+CFSVV+P+SF+NVKE+WVPE+ +
Sbjct: 52 VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 111
Query: 245 QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304
PFLL+GTQIDLR+D TL +L K+KPI EQG+KLAKE+ A YVECSALTQKGL
Sbjct: 112 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGL 171
Query: 305 KNVFDEAILAALEP 318
K VFDEAI+A L P
Sbjct: 172 KTVFDEAIIAILTP 185
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.0 bits (170), Expect = 6e-15
Identities = 65/118 (55%), Positives = 80/118 (67%), Gaps = 5/118 (4%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL+DTAGQ
Sbjct: 8 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 67
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
EDYDRLRPLSYP TDVFL+CF + + E++P + +G
Sbjct: 68 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE-----EWVPELKEYAPNVPFLLIG 120
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 2e-11
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y
Sbjct: 8 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQY 57
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.6 bits (237), Expect = 2e-24
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++G+ VGKTCL+ +T FP T+ D TV I GE L ++DTAGQE
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 123 DYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163
+ + Y + ++ + +
Sbjct: 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 106
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 1e-15
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + + Y + ++ + + SF + E + K +LVG
Sbjct: 58 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+IDL E ++ A+ E + + Y+E SA ++ +F +
Sbjct: 118 NKIDLAERREVSQQRAEEF-------------SEAQDMYYLETSAKESDNVEKLFLDLAC 164
Query: 314 AALE 317
+
Sbjct: 165 RLIS 168
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 3e-12
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGL 55
K V++G+ VGKTCL+ +T FP T+ D TV I GE L +
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 58
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.8 bits (237), Expect = 2e-24
Identities = 87/126 (69%), Positives = 105/126 (83%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDV L+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 57 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
Query: 314 AALEPP 319
A L PP
Sbjct: 177 AVLCPP 182
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.1 bits (178), Expect = 4e-16
Identities = 69/118 (58%), Positives = 81/118 (68%), Gaps = 5/118 (4%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
EDYDRLRPLSYPQTDV L+CF + + ++ H P + +G
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPAS-----FENVRAKWYPEVRHHCPNTPIILVG 116
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (150), Expect = 3e-12
Identities = 43/85 (50%), Positives = 51/85 (60%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTM 61
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTN 86
+ + L+ +
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVS 88
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.5 bits (229), Expect = 3e-23
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ + Y ++ +
Sbjct: 67 RFRTITTAYYRGAMGIMLVY 86
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.3 bits (179), Expect = 3e-16
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + + Y ++ + + + SF+N++ H +++G
Sbjct: 59 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ D N ++ +S E+GEKLA + +K++E SA ++N F
Sbjct: 119 NKCD------------VNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLA 164
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.2 bits (145), Expect = 1e-11
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L +
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.5 bits (223), Expect = 2e-22
Identities = 49/118 (41%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 200 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259
YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLVG + DLR
Sbjct: 60 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 119
Query: 260 EDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEAILAAL 316
D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL + ++++F A LA +
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.8 bits (159), Expect = 1e-13
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKLGGWFW 163
YD +RPLSYP +D L+CF + + + F
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 104
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.1 bits (139), Expect = 7e-11
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
K VVVGD GKT LL + + FP YVPTVF+NY + I +
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRI 50
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.9 bits (214), Expect = 3e-21
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ +VGKT L Y + F +V TV ++ V T+ + L ++DTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEH 169
Y + Y F++ + + + +
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ 112
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.9 bits (170), Expect = 5e-15
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE Y + Y F++ + + + SF V++ T+ LLVG
Sbjct: 58 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
K ++ +S E+G +LA L ++ E SA +K F+ +
Sbjct: 118 N------------KCDMEDERVVSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVD 164
Query: 314 AALE 317
E
Sbjct: 165 VICE 168
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.7 bits (115), Expect = 1e-07
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++G+ +VGKT L Y + F +V TV ++ V T+ + L +
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 58
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.6 bits (213), Expect = 4e-21
Identities = 67/123 (54%), Positives = 86/123 (69%)
Query: 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGT 254
+DTAG EDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LVG
Sbjct: 55 WDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 114
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A A
Sbjct: 115 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA 174
Query: 315 ALE 317
AL+
Sbjct: 175 ALQ 177
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.7 bits (177), Expect = 5e-16
Identities = 49/84 (58%), Positives = 59/84 (70%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAG ED
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMN 147
YDRLRPLSYP TDV L+CF
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSP 86
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.2 bits (147), Expect = 7e-12
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVEL 52
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (213), Expect = 6e-21
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-----------GGEPYT 112
IK + +GD VGKT L YT NKF +++ TV ++ ++
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 113 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPP 172
L L+DTAGQE + L + FL+ F N + +
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW----MSQLQANAYCEN 121
Query: 173 MKLHTLGFITNINPGW 188
+ +G ++
Sbjct: 122 PDIVLIGNKADLPDQR 137
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 2e-14
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVG 253
+DTAGQE + L + FL+ F + S SF NV+ + C+ +L+G
Sbjct: 69 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 128
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ DL Q+ ++ Q +LA + + Y E SA T + ++ + +
Sbjct: 129 NKADL------------PDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLD 175
Query: 314 AALEPPEPPKKRKCV 328
++ + +CV
Sbjct: 176 LIMK-----RMEQCV 185
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (208), Expect = 3e-20
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTA 119
+ T+K +++G+ VGK+ LL+ +T + F E T+ D T+ + G L ++DTA
Sbjct: 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 64
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQE + L P Y ++ +
Sbjct: 65 GQERFRTLTPSYYRGAQGVILVY 87
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 1e-15
Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + L P Y ++ + V +F + T+ + ++
Sbjct: 60 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLV 119
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ + + +G K A++ + ++E SA T G++ F+E +
Sbjct: 120 GNKI------------DKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVE 166
Query: 314 AALEPP 319
++ P
Sbjct: 167 KIIQTP 172
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 9e-10
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGL 55
+ T+K +++G+ VGK+ LL+ +T + F E T+ D T+ + G L +
Sbjct: 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.7 bits (198), Expect = 6e-19
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 6/138 (4%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +V+G+ GK+CLL + KF + T+ + + +GG+ L ++DTAGQE
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITN 183
+ + Y L+ + + L W S + + G +
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITS-----RETYNALTNWLTDARMLASQNIVIILCGNKKD 121
Query: 184 INPGWVRDRSLFDTAGQE 201
++ QE
Sbjct: 122 LDADREVTFLEASRFAQE 139
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 4e-15
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + + Y L+ + + S ++ + Q +L G
Sbjct: 58 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ D + + ++F + + A+E + ++E SALT + ++ F +
Sbjct: 118 NKKD------------LDADREVTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCAR 164
Query: 314 AALEPPE 320
L E
Sbjct: 165 KILNKIE 171
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 4e-08
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
K +V+G+ GK+CLL + KF + T+ + ++
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII 47
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (193), Expect = 3e-18
Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFDNYAVTVMIGGEPYTLGLFDTAGQE 122
K ++VGD VGKTCLL+ + F + D + + G L ++DTAGQE
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 123 DYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFIT 182
+ + Y L+ + W I + L LG
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-----WLTEIHEYAQHDVALMLLGNKV 122
Query: 183 NINPGWVRDRS 193
+ V R
Sbjct: 123 DSAHERVVKRE 133
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (174), Expect = 1e-15
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + + Y L+ + V + +SF+N++ + +L+G
Sbjct: 60 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 119
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
++D ++ + E GEKLAKE + ++E SA T + F
Sbjct: 120 NKVD------------SAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIA 165
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 1e-07
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFDNYAVTVMIGGEPYTLGL 55
K ++VGD VGKTCLL+ + F + D + + G L +
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 5e-18
Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 13/146 (8%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
P G G ++DTAGQE + + Y L+ + +
Sbjct: 30 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 89
Query: 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
S++ ++ T +L+G + DL Q+ +++E+ ++ A+
Sbjct: 90 STYNHLSSWLTDARNLTNPNTVIILIGNKADLE------------AQRDVTYEEAKQFAE 137
Query: 287 ELKAVKYVECSALTQKGLKNVFDEAI 312
E ++E SA T + +++ F EA
Sbjct: 138 ENGL-LFLEASAKTGENVEDAFLEAA 162
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (184), Expect = 5e-17
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL +T KF ++ T+ + + G+ L ++DTAGQE
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ + Y L+ +
Sbjct: 65 RFRAVTRSYYRGAAGALMVY 84
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 1e-08
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYT 52
K +++GD VGK+CLL +T KF ++ T+ + + G+
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 54
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 1e-17
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ ++ + G+ ++DTAGQE
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 124 YDRLRPLSYPQTDVFLVCF 142
Y R+ Y L+ +
Sbjct: 66 YRRITSAYYRGAVGALLVY 84
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 1e-14
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 17/158 (10%)
Query: 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT 214
+R F + E + + ++ ++ + ++DTAGQE Y R+ Y
Sbjct: 22 SRFTRNEF---NLESKSTIGVEFATRSIQVDGKTIKAQ-IWDTAGQERYRRITSAYYRGA 77
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274
L+ + + ++ENV+ H +LVG + DLR A+ +
Sbjct: 78 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 137
Query: 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ ++E SAL ++ F +
Sbjct: 138 KN-------------NLSFIETSALDSTNVEEAFKNIL 162
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 6e-09
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLNF 57
K V++GD VGK+ LL +T N+F E T+ ++ + G+ +
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 59
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.6 bits (182), Expect = 7e-17
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L L+DTAGQE
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
+ L P + +V + W + TE + + +G
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTK-----WIDDVRTERGSDVIIMLVG 112
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.1 bits (173), Expect = 1e-15
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Query: 168 EHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS 227
T L+DTAGQE + L P + +V + + + +
Sbjct: 27 NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVN 86
Query: 228 SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287
SF+ + T +LVG + DL + ++ +S E+GE+ AKE
Sbjct: 87 SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKE 134
Query: 288 LKAVKYVECSALTQKGLKNVFDEAI 312
L ++E SA +K +F
Sbjct: 135 LNV-MFIETSAKAGYNVKQLFRRVA 158
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 9e-10
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
K V +G+ +VGKT L+ + + F + Y T+ ++
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF 37
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.8 bits (180), Expect = 2e-16
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + T F +Y PT+ D Y + + P L + DTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSP 171
E + +R L F++ + +++N + D E P
Sbjct: 61 TEQFASMRDLYIKNGQGFILVY-SLVNQQSFQDIKPMRDQIIRVKRYEKVP 110
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (152), Expect = 1e-12
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
E P ++ DTAG E + +R L F++ +S+V+
Sbjct: 29 IEKYDPTIEDFYRKEIEVDSSPSVLEI-LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ 87
Query: 227 SSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285
SF+++K I +K P +LVG ++DL ++ +S +G LA
Sbjct: 88 QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL------------ESEREVSSSEGRALA 135
Query: 286 KELKAVKYVECSALTQKGLKNVFDEAI 312
+E ++E SA ++ + +F E +
Sbjct: 136 EEWGC-PFMETSAKSKTMVDELFAEIV 161
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
M+ K VV+G G VGK+ L + + T F +Y PT+ D Y + + P
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPS 51
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.9 bits (175), Expect = 1e-15
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 122
K +++GDG VGK+ L+ Y TNKF ++ T+ + + + G T+ ++DTAGQE
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 123 DYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK 157
+ LR Y +D L+ F + N K
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 101
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 2e-14
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 19/156 (12%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
G ++DTAGQE + LR Y +D L+ FSV
Sbjct: 32 DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS 91
Query: 227 SSFENVKEKWVPEITHHCQ-----KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG 281
SF+N W E ++ PF+++G +ID+ E + +S E+
Sbjct: 92 QSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQVSTEEA 137
Query: 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317
+ ++ Y E SA + F+EA+ L
Sbjct: 138 QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 3e-09
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
K +++GDG VGK+ L+ Y TNKF ++ T+ + +
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL 48
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.2 bits (173), Expect = 2e-15
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQED 123
K V++G+ AVGK+ L++ + +F T+ TV + ++DTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKL 175
Y L P+ Y +V + K + + L
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNE---ESFARAKNWVKELQRQASPNIVIAL 116
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (143), Expect = 2e-11
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 13/146 (8%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
E T ++DTAGQE Y L P+ Y +V + + +
Sbjct: 32 HEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91
Query: 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
SF K L G + ++ + F++ + A
Sbjct: 92 ESFARAKNWVKELQRQASPNIVIALSGNK------------ADLANKRAVDFQEAQSYAD 139
Query: 287 ELKAVKYVECSALTQKGLKNVFDEAI 312
+ ++ ++E SA T + +F
Sbjct: 140 D-NSLLFMETSAKTSMNVNEIFMAIA 164
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 4e-08
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
K V++G+ AVGK+ L++ + +F T+ +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 43
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.7 bits (172), Expect = 2e-15
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
+ + G + +++DTAGQE + L P+ Y ++ ++ + +
Sbjct: 29 NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE 88
Query: 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
SF+ VK + +VG +IDL K++ +S ++ E A+
Sbjct: 89 DSFQKVKNWVKELRKMLGNEICLCIVGNKIDL------------EKERHVSIQEAESYAE 136
Query: 287 ELKAVKYVECSALTQKGLKNVFDEAILAALE 317
+ A K+ SA KG++ +F + +E
Sbjct: 137 SVGA-KHYHTSAKQNKGIEELFLDLCKRMIE 166
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.2 bits (168), Expect = 7e-15
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+G VGKT L++ Y NKF +++ T+ ++ + IGG+ L ++DTAGQE
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ L P+ Y ++ ++ +
Sbjct: 65 FHALGPIYYRDSNGAILVY 83
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 3e-08
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
K V++G+G VGKT L++ Y NKF +++ T+ ++
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF 40
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.4 bits (171), Expect = 3e-15
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG-LFDTA 119
++ +K ++GD VGK+ ++ + + F PT+ ++ + ++DTA
Sbjct: 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
G E + L P+ Y + ++ + + L W + P + + G
Sbjct: 62 GLERFRALAPMYYRGSAAAIIVYDITKE-----ETFSTLKNWVRELRQHGPPSIVVAIAG 116
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.4 bits (145), Expect = 1e-11
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 13/146 (8%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
+ P + T + ++DTAG E + L P+ Y + ++ + +
Sbjct: 30 DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE 89
Query: 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
+F +K H + G + DL + + + A
Sbjct: 90 ETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL------------TDVREVMERDAKDYAD 137
Query: 287 ELKAVKYVECSALTQKGLKNVFDEAI 312
+ A +VE SA + +F E
Sbjct: 138 SIHA-IFVETSAKNAININELFIEIS 162
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.2 bits (134), Expect = 3e-10
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
++ +K ++GD VGK+ ++ + + F PT+ ++
Sbjct: 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF 41
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.3 bits (171), Expect = 3e-15
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ +T +F + T+ + A V I G+ L ++DTAGQE
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y L+ +
Sbjct: 65 FRSITRSYYRGAAGALLVY 83
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 1e-14
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 17/158 (10%)
Query: 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT 214
+ F H + + + NI+ ++ ++DTAGQE + + Y
Sbjct: 21 LQFTDKRF---QPVHDLTIGVEFGARMVNIDGKQIK-LQIWDTAGQESFRSITRSYYRGA 76
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274
L+ + + +F ++ H +L+G + DL ++
Sbjct: 77 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE------------SRR 124
Query: 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ E+GE A+E ++E SA T ++ F
Sbjct: 125 DVKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTA 161
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 1e-09
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
K +++GD VGK+CLL+ +T +F + T+ + ++
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV 45
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.3 bits (168), Expect = 6e-15
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG-EPYTLGLFDTA 119
+ +IK V++G+ AVGK+ +++ + +N F PT+ + + ++DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
GQE + L P+ Y LV + + +S R +++
Sbjct: 61 GQERFASLAPMYYRNAQAALVVYD--VTKPQSFIKARHWVKELHEQASKDIIIA 112
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.2 bits (147), Expect = 5e-12
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 10/146 (6%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
E+ P ++DTAGQE + L P+ Y LV + V P
Sbjct: 29 AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKP 88
Query: 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
SF + + LVG +ID+ ++ ++ ++ E+GEKLA+
Sbjct: 89 QSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE---------GGERKVAREEGEKLAE 139
Query: 287 ELKAVKYVECSALTQKGLKNVFDEAI 312
E + E SA T + + +VF
Sbjct: 140 EKGL-LFFETSAKTGENVNDVFLGIG 164
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.7 bits (130), Expect = 1e-09
Identities = 18/90 (20%), Positives = 35/90 (38%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60
+ +IK V++G+ AVGK+ +++ + +N F PT+ + + E +
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS 90
Q + L+ Y K S
Sbjct: 61 GQERFASLAPMYYRNAQAALVVYDVTKPQS 90
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.3 bits (168), Expect = 7e-15
Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 16/173 (9%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA--VTVMIGGEPYTLGLFDTAGQ 121
+K +++GD VGKT L+ Y +K+ +Y T+ ++ + G + T+ ++DTAGQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
E + L Y D ++ + F + + L
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTN--------------ASSFENIKSWRDEFLVHANVN 108
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE 234
+ +V + D + + + + + S + NV
Sbjct: 109 SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT 161
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.1 bits (157), Expect = 3e-13
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT 214
+R + + S ++ + L ++ V ++DTAGQE + L Y
Sbjct: 20 HRYVNDKY---SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGA 76
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITH----HCQKTPFLLVGTQIDLREDAPTLEKLAK 270
D ++ + V + SSFEN+K + H + PF+++G +ID
Sbjct: 77 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE----------- 125
Query: 271 NKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317
+K +S + ++LAK L + SA + F+E +AL+
Sbjct: 126 ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.1 bits (126), Expect = 3e-09
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60
+K +++GD VGKT L+ Y +K+ +Y T+ ++ + + T
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 59
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.5 bits (166), Expect = 1e-14
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L + DTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
E + +R L F + +I +N + + + + + +G
Sbjct: 61 TEQFTAMRDLYMKNGQGFALV----YSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 2e-11
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT 52
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + +
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCM 52
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 5e-09
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVG 253
DTAG E + +R L F + +S+ + S+F ++++ + + P +LVG
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ D ++ + EQG+ LA++ ++E SA ++ + +F + +
Sbjct: 116 NKCD------------LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.1 bits (165), Expect = 2e-14
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKL 175
QE+Y +R + F +N +S + + + PM L
Sbjct: 61 QEEYSAMRDQYMRTGEGF--LCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 7e-11
Identities = 25/53 (47%), Positives = 29/53 (54%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 53
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLV 252
DTAGQE+Y +R + FL F++ + SFE+ ++ +I P +LV
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED-IHQYREQIKRVKDSDDVPMVLV 114
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + D + + Q + LA+ + Y+E SA T++G+++ F +
Sbjct: 115 GNKCD-------------LAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
Query: 313 LAALE 317
+
Sbjct: 161 REIRQ 165
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.0 bits (162), Expect = 5e-14
Identities = 31/95 (32%), Positives = 44/95 (46%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ T K VVVGDG VGK+ L I + F +Y PT+ D+Y I + L + DTAG
Sbjct: 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 61
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWN 155
QE++ +R D FL+ +
Sbjct: 62 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR 96
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.4 bits (132), Expect = 5e-10
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
+ T K VVVGDG VGK+ L I + F +Y PT+ D+Y I +
Sbjct: 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWA 52
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 199 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGTQID 257
GQE++ +R D FL+ +SV +SFE+V + + P +LV ++D
Sbjct: 61 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 120
Query: 258 LREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK-GLKNVFDEAILAAL 316
L + ++ +QG+++A + Y+E SA + F + +
Sbjct: 121 L------------MHLRKVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVRVIR 167
Query: 317 E 317
+
Sbjct: 168 Q 168
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.0 bits (162), Expect = 7e-14
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 17/172 (9%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 122
+K +++GD VGKT L+ Y KF ++Y T+ ++ + + T+ ++DTAGQE
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 123 DYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFIT 182
+ L Y D ++ F + W + SP + +
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-----WRDEFLIQASPRDPENFPFVVL 117
Query: 183 NINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE 234
+ A Y + + S NV++
Sbjct: 118 GNKIDLENRQVATKRAQAWCYSKNNI-----------PYFETSAKEAINVEQ 158
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.8 bits (138), Expect = 1e-10
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+K +++GD VGKT L+ Y KF ++Y T+ ++
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 39
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 31/181 (17%)
Query: 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT 214
N+ + F + + + ++DTAGQE + L Y
Sbjct: 20 NQYVNKKF----SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA 75
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITH----HCQKTPFLLVGTQIDLREDAPTLEKLAK 270
D ++ F V +P++F+ + + + PF+++G +IDL
Sbjct: 76 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE----------- 124
Query: 271 NKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL----------EPPE 320
+ ++ ++ + + Y E SA ++ F AL E PE
Sbjct: 125 --NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 182
Query: 321 P 321
P
Sbjct: 183 P 183
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (157), Expect = 2e-13
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
++ K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L DTAGQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLH 176
++Y + + + +S + + + G + + P+ L
Sbjct: 63 DEYSIFPQTYSIDINGY--ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLV 115
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (139), Expect = 6e-11
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT 52
++ K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYH 53
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 4e-04
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 199 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQID 257
GQ++Y + +++ +SV S SFE +K + + + P +LVG + D
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 258 LREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315
L + ++ IS+E+G+ LA+ A ++E SA + +VF IL A
Sbjct: 121 L------------HMERVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEA 165
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.6 bits (156), Expect = 3e-13
Identities = 25/114 (21%), Positives = 40/114 (35%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+K + G VGK+ L++ + T +F EY PT+ Y I E ++ + DTAGQED
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHT 177
+ LV V + + +
Sbjct: 63 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 116
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (149), Expect = 3e-12
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQT 63
+K + G VGK+ L++ + T +F EY PT+ Y I E ++ + +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62
Query: 64 IKC 66
Sbjct: 63 TIQ 65
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (156), Expect = 3e-13
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 60 TMQ-TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 118
+MQ + VVVG G VGK+ L I + + F ++Y PT+ D+Y +I L + DT
Sbjct: 1 SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKL 175
AGQE++ +R + FL+ F S + K + PM L
Sbjct: 61 AGQEEFGAMREQYMRTGEGFLLVFSVTDR--GSFEEIYKFQRQILRVKDRDEFPMIL 115
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 3e-09
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+ VVVG G VGK+ L I + + F ++Y PT+ D+Y
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 3e-06
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 199 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVGTQI 256
GQE++ +R + FL+ FSV SFE + K+ +I + P +L+G
Sbjct: 62 GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIY-KFQRQILRVKDRDEFPMILIGN-- 118
Query: 257 DLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
K + Q+ ++ E+G++LA++LK Y+E SA + + F E +
Sbjct: 119 ----------KADLDHQRQVTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELV 163
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (156), Expect = 3e-13
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+T K VVVG G VGK+ L I + + F S+Y PT+ D+Y + G P L + DTAGQ
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTL 178
E++ +R FL+ F + F I L
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-----LFTQILRVKDRDDFPVVL 116
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 1e-10
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
+T K VVVG G VGK+ L I + + F S+Y PT+ D+Y + G P
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPA 54
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 4e-07
Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 14/124 (11%)
Query: 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVG 253
DTAGQE++ +R FL+ F++ SF V + + + P +LVG
Sbjct: 59 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ DL A V Y E SA + + F++ +
Sbjct: 119 NKADLESQRQVPRSEASAFGAS-------------HHVAYFEASAKLRLNVDEAFEQLVR 165
Query: 314 AALE 317
A +
Sbjct: 166 AVRK 169
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.8 bits (154), Expect = 6e-13
Identities = 24/108 (22%), Positives = 39/108 (36%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+ V G G VGK+ L++ + F Y+PTV D Y + TL + DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSP 171
+ ++ LS + F++ + E P
Sbjct: 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP 110
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (131), Expect = 7e-10
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQT 63
+ V G G VGK+ L++ + F Y+PTV D Y + TL +
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEY 92
+ + G +L+ T++ E
Sbjct: 63 FPAMQRLSISKGHAFILVYSITSRQSLEE 91
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 4e-07
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 199 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCQKTPFLLVGTQI 256
G + ++ LS + F++ +S+ S S E +K + + EI + P +LVG
Sbjct: 59 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN-- 116
Query: 257 DLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
K ++ + + + E LA+ K ++E SA +K +F E +
Sbjct: 117 ----------KCDESPSREVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELL 161
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 63.0 bits (152), Expect = 1e-12
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
++ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTA
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPP 172
GQEDY +R + + FL F + + + I
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-----FREQILRVKEDE 108
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 53.0 bits (126), Expect = 4e-09
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
K ++VG G VGK+ L + + ++F +Y PT D+Y
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 188 WVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQ 245
+ DTAGQEDY +R + + FL FS+ + + +I +
Sbjct: 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSI-TEMESFAATADFREQILRVKEDE 108
Query: 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305
PFLLVG K ++ +S E+ + A + V YVE SA T+ +
Sbjct: 109 NVPFLLVGN------------KSDLEDKRQVSVEEAKNRADQWN-VNYVETSAKTRANVD 155
Query: 306 NVFDEAI 312
VF + +
Sbjct: 156 KVFFDLM 162
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.3 bits (147), Expect = 4e-12
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 122
IK VVVG+GAVGK+ ++ Y F +Y T+ ++ + + E L L+DTAGQE
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 123 DYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163
++D + Y ++ F + +
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 103
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.9 bits (120), Expect = 2e-08
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
IK VVVG+GAVGK+ ++ Y F +Y T+ ++
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF 39
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (97), Expect = 2e-05
Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT 214
R G F T+ L+DTAGQE++D + Y
Sbjct: 20 QRYCKGIF----TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA 75
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274
++ FS SFE W ++ P LV +IDL +
Sbjct: 76 QACVLVFSTTDRESFEA-ISSWREKVVAEVGDIPTALVQNKIDLLD------------DS 122
Query: 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317
I E+ E LAK LK ++ S + VF L+
Sbjct: 123 CIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 164
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.2 bits (147), Expect = 6e-12
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 118
R++ ++ V+GD GK+ L+ + T + T + Y +++ G+ + + + +
Sbjct: 1 RSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREE 59
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTL 178
AG D V F + S +L G + E + L +
Sbjct: 60 AGAPDA-------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 112
Query: 179 GFITNINPGWVRDRS 193
G I+ R
Sbjct: 113 GTQDRISASSPRVVG 127
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.5 bits (135), Expect = 3e-10
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60
+ ++ V+GD GK+ L+ + T + T + Y +++ G+ + + +
Sbjct: 3 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 61
Query: 61 MQTIKCVVVGDGAVGKTC 78
K D +
Sbjct: 62 APDAKFSGWADAVIFVFS 79
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 5e-06
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270
D + FS+ +SF+ V +++ + L + ++
Sbjct: 68 SGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRIS------A 120
Query: 271 NKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317
+ + + + L ++K Y E A + VF E +
Sbjct: 121 SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVT 167
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.4 bits (145), Expect = 8e-12
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +V+GD VGKTCL + +FP T+ ++ V I GE + L+DTAGQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 123 DYDRL-RPLSYPQTDVFLVCFGNMMN 147
+ + Y + +
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDMTNM 88
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.3 bits (124), Expect = 7e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
K +V+GD VGKTCL + +FP T+ ++ +
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAV 44
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 17/154 (11%)
Query: 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT 214
R G F + + +I+ ++ + + + Y
Sbjct: 20 YRFCAGRF---PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 76
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273
+ + + + +SF ++ H P +LVG + DL
Sbjct: 77 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL------------RSA 124
Query: 274 KPISFEQGEKLAKELKAVKYVECSALTQKGLKNV 307
+ + +K A E SA +V
Sbjct: 125 IQVPTDLAQKFADTHSM-PLFETSAKNPNDNDHV 157
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 6e-11
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ V P ++DTAGQE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
+ LR Y Q ++ F + N + + P+
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW----HRDLVRVCENIPI 110
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 7e-09
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
K V+VGDG GKT + + T +F +YV T+
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 40
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 16/153 (10%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
+ + + +++DTAGQE + LR Y Q ++ F V S
Sbjct: 29 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR 88
Query: 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
+++NV ++ C+ P +L G ++D+++ + + +++K +
Sbjct: 89 VTYKNVPNWH-RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---------- 137
Query: 287 ELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319
+Y + SA + + F + P
Sbjct: 138 -----QYYDISAKSNYNFEKPFLWLARKLIGDP 165
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 57.0 bits (136), Expect = 1e-10
Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 9/138 (6%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
++ ++VG A GKT +L + + F+ + + + ++D GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 56
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITN 183
L + T + + + + + E + +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSN-----DRERVNEAREELMRMLAEDELRDAVLLVFANKQ 111
Query: 184 INPGWVRDRSLFDTAGQE 201
P + + D G
Sbjct: 112 DLPNAMNAAEITDKLGLH 129
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 52.3 bits (124), Expect = 5e-09
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 9/116 (7%)
Query: 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGT 254
+D GQ+ L + T + +E+ + + + LLV
Sbjct: 49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 108
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+A + I+ + G + + A + GL D
Sbjct: 109 NKQDLPNAMNAAE--------ITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDW 155
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
++ ++VG A GKT +L + + F+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 37
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.9 bits (123), Expect = 1e-08
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+K +++G G GK+ + VPT + + D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRS 57
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK 157
R + + + V+ + +
Sbjct: 58 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE 91
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.3 bits (106), Expect = 2e-06
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+K +++G G GK+ + VPT
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE 37
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.1 bits (95), Expect = 7e-05
Identities = 24/164 (14%), Positives = 45/164 (27%), Gaps = 27/164 (16%)
Query: 177 TLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---- 232
T G I + D GQ R + + ++
Sbjct: 32 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE 91
Query: 233 ------KEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285
K + IT+ Q + +L + DL E+ L + ++ + A
Sbjct: 92 NRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAA 151
Query: 286 KELKAVKYV-------------ECSALTQKGLKNVFD---EAIL 313
+E +V A + ++ VF + IL
Sbjct: 152 REFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 195
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 51.6 bits (122), Expect = 1e-08
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 3/113 (2%)
Query: 200 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDL 258
R+ P + + KE+ +T P L++G +ID
Sbjct: 67 HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 126
Query: 259 REDAPTLEKLAKNKQKPISFEQGEKLAKELKA--VKYVECSALTQKGLKNVFD 309
E + +G KEL A ++ CS L ++G F
Sbjct: 127 PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+T K V +G GKT LL ++ + +T+ FD G
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT----FDLGGH 67
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
R+ P + + + + R ++ +L + + P +
Sbjct: 68 IQARRVWKNYLPAINGIVFLV-DCADHERLLESKEELDSLMTDETIANVPIL 118
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 39.7 bits (91), Expect = 1e-04
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
+T K V +G GKT LL ++ + +T+
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 55
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.5 bits (119), Expect = 3e-08
Identities = 24/170 (14%), Positives = 39/170 (22%), Gaps = 13/170 (7%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K + +G GKT LL ++ + PT + FD G
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-ATLQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57
Query: 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184
RL +P+ + + D R + I+ P I
Sbjct: 58 RRLWKDYFPEVNGIVFLV--DAADPERFDEARVELDALFNIAELKDVPF------VILGN 109
Query: 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE 234
S + + + F S E
Sbjct: 110 KIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM-CSVVMRNGYLE 158
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.6 bits (109), Expect = 5e-07
Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 2/134 (1%)
Query: 176 HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 235
T + + FD G RL +P+ + + P F+ + +
Sbjct: 30 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 89
Query: 236 WVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295
K ++ +A + +L + G + + + V+
Sbjct: 90 LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRS--ALGLLNTTGSQRIEGQRPVEVFM 147
Query: 296 CSALTQKGLKNVFD 309
CS + + G F
Sbjct: 148 CSVVMRNGYLEAFQ 161
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (101), Expect = 6e-06
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
K + +G GKT LL ++ + PT
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-ATLQPTWHPTS 36
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 49.3 bits (116), Expect = 7e-08
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+ ++ +VG GKT + + +F + +PTV N
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM 39
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 49.3 bits (116), Expect = 7e-08
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100
+ ++ +VG GKT + + +F + +PTV N
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM 39
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 15/149 (10%), Positives = 36/149 (24%), Gaps = 10/149 (6%)
Query: 164 FISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223
S + + M + I G V + + + + +
Sbjct: 22 IASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 81
Query: 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK 283
+ E Q P L++G + DL +K + +
Sbjct: 82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---------ALDEKELIEKMNLS 132
Query: 284 LAKELKAVKYVECSALTQKGLKNVFDEAI 312
++ + + S + + I
Sbjct: 133 AIQDRE-ICCYSISCKEKDNIDITLQWLI 160
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 7e-08
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 11/104 (10%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+K +++G G GK+ ++ + + FD GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKM--------FDVGGQRS 54
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRR---SVDWNRKLGGWFWF 164
+ + + C + NR F
Sbjct: 55 ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 98
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.2 bits (103), Expect = 5e-06
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+K +++G G GK+ ++ + +
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTF 39
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 20/157 (12%), Positives = 39/157 (24%), Gaps = 24/157 (15%)
Query: 177 TLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK--- 233
G + +FD GQ + + + C ++
Sbjct: 29 GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88
Query: 234 -------EKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285
+ + + T +L + DL E+ L + E+ A
Sbjct: 89 NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA 148
Query: 286 KEL-------------KAVKYVECSALTQKGLKNVFD 309
+ K + A K ++ VFD
Sbjct: 149 AYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 185
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 8e-08
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 1/102 (0%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K +++G VGK+ L + + Y ++++ GE +L ++D Q+
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFIS 166
L D +++ + ++ +
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 103
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 1e-06
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTI 64
K +++G VGK+ L + + Y ++++ GE +L +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 65 KCV 67
+ +
Sbjct: 62 RWL 64
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 49.2 bits (116), Expect = 9e-08
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 9/111 (8%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ ++ +++G A GKT +L + + F+ + + ++D GQ
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQ 66
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPP 172
+ L Y T + D + I +
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADR-----DRIDEARQELHRIINDREMR 112
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 43.4 bits (101), Expect = 8e-06
Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 9/143 (6%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
+ T+GF +++D GQ+ L Y T +
Sbjct: 33 KLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 92
Query: 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
+ +++ I + +L+ DA ++ + G +
Sbjct: 93 DRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK--------LGLTRIR 144
Query: 287 ELKAVKYVECSALTQKGLKNVFD 309
+ + A + GL
Sbjct: 145 D-RNWYVQPSCATSGDGLYEGLT 166
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+ ++ +++G A GKT +L + + F+
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE 49
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 1e-07
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 2/111 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 122
+ V++G+ VGK+ L + S+ D Y T+M+ GE T+ L D +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64
Query: 123 DYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
+ Q + ++ + + TE P +
Sbjct: 65 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 115
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-06
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQ 62
+ V++G+ VGK+ L + S+ D Y T+M+ GE T+ L +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64
Query: 63 TIKC 66
Sbjct: 65 GENE 68
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 11/145 (7%)
Query: 167 TEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226
T GF +++D GQ + TD+ +
Sbjct: 37 ASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR 96
Query: 227 SSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285
FE ++ + P L+ + DL I+
Sbjct: 97 KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT---------AAPASEIAEGLNLHTI 147
Query: 286 KELKAVKYVECSALTQKGLKNVFDE 310
++ + + CSALT +G+++ +
Sbjct: 148 RD-RVWQIQSCSALTGEGVQDGMNW 171
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 5/110 (4%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q ++ +++G GKT LL + F+ +V G G
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQGFKLN---VWDIGG 69
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSP 171
+ R SY + L+ + + +R + ++L P
Sbjct: 70 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 40.7 bits (94), Expect = 6e-05
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
Q ++ +++G GKT LL + F+
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK 53
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 47.3 bits (111), Expect = 4e-07
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 9/138 (6%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
++ +++G GKT +L + + F+ ++ + L ++D GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY----KNLKLNVWDLGGQTS 73
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITN 183
Y T + + R S + E +
Sbjct: 74 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASK-----ELHLMLQEEELQDAALLVFANKQ 128
Query: 184 INPGWVRDRSLFDTAGQE 201
PG + +
Sbjct: 129 DQPGALSASEVSKELNLV 146
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 40.7 bits (94), Expect = 7e-05
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT 43
++ +++G GKT +L + + F+ ++
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS 57
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 11/118 (9%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLV 252
++D GQ Y T + ++ + Q L+
Sbjct: 65 VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 124
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ D E +S E K+ ++ V SA+ +G+ D
Sbjct: 125 ANKQDQPGALSASE---------VSKELNLVELKD-RSWSIVASSAIKGEGITEGLDW 172
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 45.8 bits (107), Expect = 9e-07
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
++ +++G GKT +L + PT+ N + + L ++D GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI---KTLEHRGFKLNIWDVGGQKS 58
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
+ TD + + + +R D R+L + +
Sbjct: 59 LRSYWRNYFESTDGLIWVV-DSADRQRMQDCQRELQSLLVEERLAGATLL 107
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
++ +++G GKT +L + PT+ N
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI 38
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 42.0 bits (97), Expect = 2e-05
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 11/136 (8%)
Query: 176 HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 235
TLGF +++D GQ+ + TD + ++ + +
Sbjct: 32 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 91
Query: 236 WVPEITH-HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294
+ L+ + DL + I +
Sbjct: 92 LQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHH----------WRIQ 141
Query: 295 ECSALTQKGLKNVFDE 310
CSA+T + L D
Sbjct: 142 GCSAVTGEDLLPGIDW 157
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.2 bits (108), Expect = 1e-06
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 1/113 (0%)
Query: 67 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR 126
+ VG GKT L + T ++ + ++ D+ A+ + +L L D G E
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 127 LRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
+ + +V + +R V + S L
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 115
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKC 66
+ VG GKT L + T ++ + ++ D+ A+ + +L L ++++
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 45.1 bits (105), Expect = 2e-06
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
++ +++G GKT +L + V T+ + + ++D G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEV----VTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 61
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164
Y TD + + R + + +
Sbjct: 62 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE 102
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 42.8 bits (99), Expect = 1e-05
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
++ +++G GKT +L + + F+
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 42
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.9 bits (105), Expect = 3e-06
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 6/101 (5%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+K +++G G GK+ L + PT + + + D GQ
Sbjct: 3 VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIH---EYDFEIKNVPFKMVDVGGQRS 56
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164
+ + L + + ++ +
Sbjct: 57 ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 97
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++G G GK+ L + PT
Sbjct: 3 VKILLLGAGESGKSTFLKQM---RIIHGQDPTK 32
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 43.8 bits (102), Expect = 6e-06
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q K ++VG GKT +L ++ N+ + + + ++D GQ
Sbjct: 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQ 69
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164
E T+ V R + R+
Sbjct: 70 ESLRSSWN--TYYTNTEFVIVVVDSTDRERISVTREELYKMLA 110
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 43.5 bits (101), Expect = 9e-06
Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 11/136 (8%)
Query: 176 HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 235
T+G ++D GQE Y T+ +V +E+
Sbjct: 45 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 104
Query: 236 WVPEITHHCQKTPFLL-VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294
+ H + LL + D++E E IS K+ +
Sbjct: 105 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAE---------ISQFLKLTSIKDHQ-WHIQ 154
Query: 295 ECSALTQKGLKNVFDE 310
C ALT +GL +
Sbjct: 155 ACCALTGEGLCQGLEW 170
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 41.1 bits (95), Expect = 4e-05
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
Q K ++VG GKT +L ++ N+ + + +
Sbjct: 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN 57
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 7/92 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
T + +++G G GK+ ++ V T + +FD GQ
Sbjct: 5 ATHRLLLLGAGESGKSTIVKQMRIL----HVVLTS---GIFETKFQVDKVNFHMFDVGGQ 57
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVD 153
D R + + + +
Sbjct: 58 RDERRKWIQCFNDVTAIIFVVASSSYNMVIRE 89
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.4 bits (91), Expect = 3e-04
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
T + +++G G GK+ ++ V T
Sbjct: 5 ATHRLLLLGAGESGKSTIVKQMRIL----HVVLTS 35
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.98 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.98 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.94 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.93 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.93 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.93 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.92 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.91 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.9 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.89 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.86 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.85 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.85 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.82 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.78 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.78 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.75 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.74 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.73 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.68 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.67 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.67 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.63 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.6 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.6 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.59 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.59 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.55 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.55 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.55 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.5 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.46 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.44 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.43 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.41 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.37 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.34 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.33 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.31 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.22 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.15 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.12 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.12 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.09 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.02 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.01 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.01 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.97 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 98.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 98.96 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 98.88 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.8 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.77 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 98.73 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.7 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.69 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.64 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 98.63 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 98.62 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 98.62 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 98.6 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 98.57 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.55 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 98.46 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 98.46 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 98.45 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 98.44 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 98.39 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.38 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 98.32 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 98.3 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 98.28 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.25 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.24 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 98.12 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.12 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.99 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.9 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.9 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 97.87 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 97.78 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 97.75 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 97.64 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 97.61 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.53 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.51 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.49 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.31 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 97.28 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.2 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.09 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.96 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.75 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.31 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.3 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.22 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.03 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.02 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 95.99 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.91 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.84 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.76 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.7 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.64 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.5 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.49 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.42 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.39 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.36 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.25 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.17 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.02 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.01 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.99 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.95 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.94 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.94 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.83 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.8 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.75 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.72 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.68 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.64 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.61 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.5 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.47 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.42 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.39 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.3 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.09 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.08 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.06 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.04 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.97 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.89 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.88 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.86 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.86 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.85 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 93.82 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.73 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.7 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.67 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.62 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.62 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 93.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.53 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.46 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.31 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 93.26 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.19 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.19 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 93.15 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.13 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.05 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.99 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.95 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.87 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.86 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.77 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 92.74 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 92.68 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.66 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.64 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 92.63 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 92.58 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 92.55 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.47 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.32 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.32 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.25 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.23 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.21 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.1 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.04 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.95 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.81 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.81 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 91.75 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.71 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 91.7 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.56 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.54 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 91.4 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.39 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.39 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.33 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 91.31 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.27 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 91.24 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.18 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 91.17 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.06 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 91.04 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.02 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 91.01 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.98 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 90.95 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.95 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.93 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.91 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.88 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.85 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 90.8 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.77 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 90.63 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.62 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 90.6 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.46 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.43 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.36 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 90.33 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.32 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.27 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.25 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.1 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 90.1 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 89.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.92 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 89.91 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 89.83 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 89.8 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 89.77 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 89.74 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.71 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.7 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.68 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.62 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.62 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.61 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.53 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.38 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.34 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 89.28 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.25 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.18 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.17 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.07 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.06 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 89.02 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 88.94 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 88.9 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.75 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 88.73 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.66 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 88.58 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 88.45 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 88.42 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.39 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.36 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.17 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 88.13 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 88.03 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 88.03 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.0 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 87.8 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.79 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 87.78 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.77 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 87.69 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.6 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.53 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.51 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.39 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 87.36 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.24 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.22 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 87.19 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 87.09 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.03 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 87.03 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.8 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 86.63 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.54 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 86.45 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 86.42 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 86.21 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.16 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.13 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 85.69 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 85.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 85.66 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 85.65 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.65 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.54 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.47 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 85.22 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 85.08 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.95 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.88 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.73 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.53 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.49 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 84.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 83.89 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.7 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.49 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.47 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 83.37 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.07 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 82.93 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.88 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.79 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 82.62 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 82.56 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 82.31 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 82.2 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.06 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 82.01 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.93 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 81.7 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 81.69 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 81.42 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 81.19 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 80.94 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 80.79 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 80.67 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.66 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 80.46 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.21 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 80.19 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 80.15 |
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-40 Score=278.47 Aligned_cols=191 Identities=93% Similarity=1.422 Sum_probs=167.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.||..+.|.+++.||+++.+.+...+++.
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~------------------------------- 49 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE------------------------------- 49 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTE-------------------------------
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCc-------------------------------
Confidence 9999999999999999999999999999999999987655544444433
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+.+.+||++|+
T Consensus 50 -----------------------------~~~l~i~D~~g~--------------------------------------- 61 (191)
T d2ngra_ 50 -----------------------------PYTLGLFDTAGQ--------------------------------------- 61 (191)
T ss_dssp -----------------------------EEEEEEEEECCS---------------------------------------
T ss_pred -----------------------------eeeeeccccccc---------------------------------------
Confidence 344556677777
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
++|...++.+++.+|++++|||+++++||+++.+.|...+
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~ 101 (191)
T d2ngra_ 62 ----------------------------------------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 101 (191)
T ss_dssp ----------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred ----------------------------------------hhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHH
Confidence 7777888889999999999999999999999985667777
Q ss_pred hhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 241 THHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 241 ~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
....++.|+++||||+|+.......+.......+.++.+++++|+++++.++|+|+||++|.||+++|+.+++.+++++.
T Consensus 102 ~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~~~ 181 (191)
T d2ngra_ 102 THHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181 (191)
T ss_dssp HHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSCCS
T ss_pred hhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcCcC
Confidence 77778999999999999988766666666777889999999999999887899999999999999999999999999999
Q ss_pred CCCCCCcccC
Q psy9997 321 PPKKRKCVLL 330 (330)
Q Consensus 321 ~~~~~~~~~~ 330 (330)
++++++|+||
T Consensus 182 ~k~~~~C~i~ 191 (191)
T d2ngra_ 182 PKKSRRCVLL 191 (191)
T ss_dssp TTCCCSCCCC
T ss_pred CCCCCCCeEC
Confidence 9999999997
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-36 Score=253.26 Aligned_cols=176 Identities=53% Similarity=0.944 Sum_probs=161.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+.||+++|++|||||||++||..+.|.+.+.||+++.+.....+++..+.+++||++|+
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~--------------------- 60 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL--------------------- 60 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS---------------------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCcc---------------------
Confidence 67999999999999999999999999999999999888888899999999999999999
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...++.+++++|++++|||
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d 82 (177)
T d1kmqa_ 61 ----------------------------------------------------------EDYDRLRPLSYPDTDVILMCFS 82 (177)
T ss_dssp ----------------------------------------------------------GGGTTTGGGGCTTCSEEEEEEE
T ss_pred ----------------------------------------------------------chhcccchhhcccchhhhhhcc
Confidence 7777788888999999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++...|...+.+..+++|++|||||+|+..............++.++.+++++++++++..+|+||||++|.
T Consensus 83 ~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~ 162 (177)
T d1kmqa_ 83 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 162 (177)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 99999999988567777777778999999999999988776666666777789999999999999998899999999999
Q ss_pred CHHHHHHHHHHHhcC
Q psy9997 303 GLKNVFDEAILAALE 317 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~ 317 (330)
||+++|+.+++++++
T Consensus 163 gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 163 GVREVFEMATRAALQ 177 (177)
T ss_dssp THHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-37 Score=255.78 Aligned_cols=179 Identities=70% Similarity=1.185 Sum_probs=161.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||++||+.+.|.+.+.||+++.+...+..++..+.+.+||++|+
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~------------------- 67 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ------------------- 67 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCS-------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeeccccccc-------------------
Confidence 5568999999999999999999999999999999999888888888999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 68 ------------------------------------------------------------e~~~~~~~~~~~~a~~~ilv 87 (185)
T d2atxa1 68 ------------------------------------------------------------EDYDRLRPLSYPMTDVFLIC 87 (185)
T ss_dssp ------------------------------------------------------------SSSTTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------chhhhhhhhcccccceeeec
Confidence 66777778889999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||+++++||+++...|...++...++.|+++||||+|+..............++.++.+++++++++++.+.|+||||++
T Consensus 88 ~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~ 167 (185)
T d2atxa1 88 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 167 (185)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCC
Confidence 99999999999875777778778889999999999999887655555556667899999999999999988999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.||+++|+.++++++.|
T Consensus 168 ~~gv~e~F~~li~~il~P 185 (185)
T d2atxa1 168 QKGLKTVFDEAIIAILTP 185 (185)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CcCHHHHHHHHHHHHcCC
Confidence 999999999999999865
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-35 Score=246.51 Aligned_cols=179 Identities=72% Similarity=1.215 Sum_probs=154.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||++||++|||||||+.||+.+.|.+++.||+++.+.+.+..++..+
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~------------------------------ 53 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV------------------------------ 53 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEE------------------------------
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcce------------------------------
Confidence 57999999999999999999999999999999998876665555554444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+.+||++|+
T Consensus 54 ------------------------------~~~~~d~~g~---------------------------------------- 63 (183)
T d1mh1a_ 54 ------------------------------NLGLWDTAGQ---------------------------------------- 63 (183)
T ss_dssp ------------------------------EEEEECCCCS----------------------------------------
T ss_pred ------------------------------EEEeeccccc----------------------------------------
Confidence 3445566666
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
+.+...+..+++++|++++|||+++++||+++...|...+.
T Consensus 64 ---------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~ 104 (183)
T d1mh1a_ 64 ---------------------------------------EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104 (183)
T ss_dssp ---------------------------------------GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred ---------------------------------------ccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHH
Confidence 77778888889999999999999999999999856777787
Q ss_pred hcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+..++|++|||||+|+.......+.......+.+...++..++++++.+.|+||||++|.||+++|+.+++++++++
T Consensus 105 ~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~pp 182 (183)
T d1mh1a_ 105 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (183)
T ss_dssp HHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcCCC
Confidence 777899999999999998776666666677778899999999999998889999999999999999999999999874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-35 Score=242.59 Aligned_cols=165 Identities=31% Similarity=0.516 Sum_probs=143.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
||++||+++||+|||||||+.||+++.|.+.+.||+++.+.+.+.+++..+
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------------------------- 52 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWA----------------------------- 52 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEE-----------------------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccc-----------------------------
Confidence 789999999999999999999999999999999998777665555554444
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+.+||++|+
T Consensus 53 -------------------------------~~~i~d~~g~--------------------------------------- 62 (169)
T d1x1ra1 53 -------------------------------ILDVLDTAGQ--------------------------------------- 62 (169)
T ss_dssp -------------------------------EEEEEECCSC---------------------------------------
T ss_pred -------------------------------cccccccccc---------------------------------------
Confidence 4555677776
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.+...++.+++++|++++|||+++++||+++. .|+..+
T Consensus 63 ----------------------------------------~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~-~~~~~i 101 (169)
T d1x1ra1 63 ----------------------------------------EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVD-RFHQLI 101 (169)
T ss_dssp ----------------------------------------GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHH-HHHHHH
T ss_pred ----------------------------------------cccccchhhhhhhccEEEEecccccchhhhccc-hhhHHH
Confidence 667777788899999999999999999999998 899998
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC-CHHHHHHHHHHHhcC
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK-GLKNVFDEAILAALE 317 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~i~~ 317 (330)
.+.. .+.|+++||||+|+... +.++.++++++++.++ ++|+|+||+++. ||+++|..+++.+++
T Consensus 102 ~~~~~~~~~p~ilvgnK~Dl~~~------------~~v~~e~~~~~~~~~~-~~~~e~Sak~~~~nV~~~F~~l~~~i~~ 168 (169)
T d1x1ra1 102 LRVKDRESFPMILVANKVDLMHL------------RKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 168 (169)
T ss_dssp HHHHTSSCCCEEEEEECTTCSTT------------CCSCHHHHHHHHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HhhccccCccEEEEecccchhhh------------ceeehhhHHHHHHHcC-CEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 7653 57999999999999876 8899999999999998 699999999885 999999999999875
Q ss_pred C
Q psy9997 318 P 318 (330)
Q Consensus 318 ~ 318 (330)
+
T Consensus 169 ~ 169 (169)
T d1x1ra1 169 Q 169 (169)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-35 Score=247.32 Aligned_cols=177 Identities=43% Similarity=0.819 Sum_probs=160.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||++||+.+.|.+.|.||+++.+...+.+++..+.+++||++|+
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~--------------------- 60 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS--------------------- 60 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCS---------------------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeecccccccc---------------------
Confidence 68999999999999999999999999999999999988888889999999999999999
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...++.+++++|++++|||
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d 82 (179)
T d1m7ba_ 61 ----------------------------------------------------------PYYDNVRPLSYPDSDAVLICFD 82 (179)
T ss_dssp ----------------------------------------------------------GGGTTTGGGGCTTCSEEEEEEE
T ss_pred ----------------------------------------------------------ccccccccchhhhhhhhheeee
Confidence 6666777888999999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++.+.|...+....+++|+++||||+|+..............++.++.+++..++++++..+|+||||++|.
T Consensus 83 ~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~ 162 (179)
T d1m7ba_ 83 ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 162 (179)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBH
T ss_pred cccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999998667777777778999999999999988766666666677889999999999999987899999999998
Q ss_pred C-HHHHHHHHHHHhcCC
Q psy9997 303 G-LKNVFDEAILAALEP 318 (330)
Q Consensus 303 ~-v~~~f~~l~~~i~~~ 318 (330)
| ++++|+.+++.++++
T Consensus 163 n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 163 NSVRDIFHVATLACVNK 179 (179)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 5 999999999999863
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-35 Score=240.58 Aligned_cols=165 Identities=27% Similarity=0.514 Sum_probs=141.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.||..+.|.+++.||+++.+...+.++
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~--------------------------------- 47 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD--------------------------------- 47 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESS---------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEee---------------------------------
Confidence 89999999999999999999999999999999999876665444333
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+..+.+.+||++|+
T Consensus 48 ---------------------------~~~~~~~~~d~~g~--------------------------------------- 61 (167)
T d1c1ya_ 48 ---------------------------CQQCMLEILDTAGT--------------------------------------- 61 (167)
T ss_dssp ---------------------------SCEEEEEEEEECSS---------------------------------------
T ss_pred ---------------------------eeEEEeccccccCc---------------------------------------
Confidence 33445566677777
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.+...++.+++++|++++|||+++++||+++. .|+..+
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~-~~~~~~ 100 (167)
T d1c1ya_ 62 ----------------------------------------EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQ-DLREQI 100 (167)
T ss_dssp ----------------------------------------CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHH-HHHHHH
T ss_pred ----------------------------------------ccccccccccccccceeEEeeeccchhhhHhHH-HHHHHH
Confidence 666677778899999999999999999999998 888887
Q ss_pred hhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 241 THH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 241 ~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.+. .++.|++|||||+|+... +.+..+++..++++++.++|+|+||++|.||+++|+.+++++.+
T Consensus 101 ~~~~~~~~~p~ilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~k 167 (167)
T d1c1ya_ 101 LRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167 (167)
T ss_dssp HHHHCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHTC
T ss_pred HHhcCCCCCeEEEEEEecCcccc------------cccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhcC
Confidence 664 367999999999999765 78899999999998766899999999999999999999998853
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=1.8e-34 Score=237.68 Aligned_cols=164 Identities=32% Similarity=0.561 Sum_probs=139.9
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.||+.+.|..+|.||+++.|.+.+.+++..+
T Consensus 2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~----------------------------- 52 (168)
T d1u8za_ 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV----------------------------- 52 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE-----------------------------
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccc-----------------------------
Confidence 688999999999999999999999999999999998877765555554444
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+.+||++|+
T Consensus 53 -------------------------------~l~i~d~~g~--------------------------------------- 62 (168)
T d1u8za_ 53 -------------------------------QIDILDTAGQ--------------------------------------- 62 (168)
T ss_dssp -------------------------------EEEEEECCC----------------------------------------
T ss_pred -------------------------------cccccccccc---------------------------------------
Confidence 4455577766
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.+..++..+++++|++++|||++++.||+++. .|+.++
T Consensus 63 ----------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~i 101 (168)
T d1u8za_ 63 ----------------------------------------EDYAAIRDNYFRSGEGFLCVFSITEMESFAATA-DFREQI 101 (168)
T ss_dssp ------------------------------------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHH-HHHHHH
T ss_pred ----------------------------------------cchhhhhhhcccccceeEEEeeccchhhhhhHH-HHHHHH
Confidence 556666777888999999999999999999998 899988
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.+.. +++|+++||||+|+... ++++.++++++++.++ ++|+|+||++|.||+++|+.+++.+..
T Consensus 102 ~~~~~~~~~piiivgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gv~e~f~~l~~~i~~ 167 (168)
T d1u8za_ 102 LRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHhhCCCCCcEEEEecccccccc------------ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence 7653 68999999999999665 8899999999999998 699999999999999999999998764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-34 Score=236.52 Aligned_cols=162 Identities=30% Similarity=0.508 Sum_probs=139.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||+.||.++.|.+.+.||++..|.+.+.+++.++
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~------------------------------ 52 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY------------------------------ 52 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE------------------------------
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEE------------------------------
Confidence 68999999999999999999999999999999998776666555555444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+.+||++|.
T Consensus 53 ------------------------------~l~i~d~~g~---------------------------------------- 62 (167)
T d1xtqa1 53 ------------------------------HLQLVDTAGQ---------------------------------------- 62 (167)
T ss_dssp ------------------------------EEEEEECCCC----------------------------------------
T ss_pred ------------------------------Eeeecccccc----------------------------------------
Confidence 4455577666
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
+.+..++..+++++|++++|||+++++||+.+. .|+..+.
T Consensus 63 ---------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~ 102 (167)
T d1xtqa1 63 ---------------------------------------DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIK-VIHGKLL 102 (167)
T ss_dssp ---------------------------------------CTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHH-HHHHHHH
T ss_pred ---------------------------------------cccccccchhhhhhhhhhhhcccchhhhhhhhh-hhhhhhh
Confidence 556666777888999999999999999999998 8998887
Q ss_pred hcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 242 HHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 242 ~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+.. .++|++|||||+|+..+ +.++.+++++++++++ ++|+|+||++|.||+++|+.+++.+.
T Consensus 103 ~~~~~~~~piilvgnK~Dl~~~------------r~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 103 DMVGKVQIPIMLVGNKKDLHME------------RVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAE 166 (167)
T ss_dssp HHHCSSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hcccccccceeeeccccccccc------------cchhHHHHHHHHHHcC-CEEEEEecCCCCCHHHHHHHHHHHhc
Confidence 653 57999999999999765 8899999999999998 69999999999999999999998874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-34 Score=236.98 Aligned_cols=163 Identities=31% Similarity=0.551 Sum_probs=140.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.||+.+.|.+++.||+++.+.....+++..+
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~----------------------------- 51 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPS----------------------------- 51 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE-----------------------------
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceE-----------------------------
Confidence 899999999999999999999999999999999998766665555554444
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+.+||++|+
T Consensus 52 -------------------------------~l~~~d~~g~--------------------------------------- 61 (167)
T d1kaoa_ 52 -------------------------------VLEILDTAGT--------------------------------------- 61 (167)
T ss_dssp -------------------------------EEEEEECCCT---------------------------------------
T ss_pred -------------------------------eeccccCCCc---------------------------------------
Confidence 4555677776
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.+...+..+++++|++++|||++++.||+++. .|...+
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~ 100 (167)
T d1kaoa_ 62 ----------------------------------------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK-PMRDQI 100 (167)
T ss_dssp ----------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHH-HHHHHH
T ss_pred ----------------------------------------cccccchHHHhhcccceeeeeeecchhhhhhhh-chhhhh
Confidence 556666777889999999999999999999998 888887
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.... +++|++|||||+|+... +.+..++++.+++.++ ++|+|+||++|.||+++|+.+++++.
T Consensus 101 ~~~~~~~~~piilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sak~g~~i~e~f~~i~~~i~ 165 (167)
T d1kaoa_ 101 IRVKRYEKVPVILVGNKVDLESE------------REVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHTTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCEEEEEEccchhhc------------ccchHHHHHHHHHHcC-CeEEEECCCCCcCHHHHHHHHHHHHc
Confidence 6643 67999999999999765 7888999999999998 69999999999999999999998864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-34 Score=237.02 Aligned_cols=166 Identities=31% Similarity=0.498 Sum_probs=141.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||++||++|||||||+.||.++.|.+++.||..+.+.+.+.+++.+
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~------------------------------- 53 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIP------------------------------- 53 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEE-------------------------------
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCee-------------------------------
Confidence 5799999999999999999999999999999988766666555555444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.+.+||++|+
T Consensus 54 -----------------------------~~l~~~d~~g~---------------------------------------- 64 (173)
T d2fn4a1 54 -----------------------------ARLDILDTAGQ---------------------------------------- 64 (173)
T ss_dssp -----------------------------EEEEEEECCCT----------------------------------------
T ss_pred -----------------------------eeeeccccccc----------------------------------------
Confidence 44555677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
+++...+..+++++|++++|||++++.||+.+. .|+..+.
T Consensus 65 ---------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~ 104 (173)
T d2fn4a1 65 ---------------------------------------EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVG-KLFTQIL 104 (173)
T ss_dssp ---------------------------------------TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHH-HHHHHHH
T ss_pred ---------------------------------------cccccccchhhccceeeeeecccccccccchhh-hhhHHHH
Confidence 666677777889999999999999999999998 8988876
Q ss_pred hc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+. ..++|++|||||+|+... +.+..++++.+++.++ ++|+||||++|.||+++|+.+++++.+++
T Consensus 105 ~~~~~~~~p~ilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sak~g~gv~e~f~~l~~~i~k~~ 171 (173)
T d2fn4a1 105 RVKDRDDFPVVLVGNKADLESQ------------RQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171 (173)
T ss_dssp HHHTSSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCceEEEEEeechhhc------------cccchhhhhHHHHhcC-CEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence 64 368999999999999765 7889999999999998 79999999999999999999999987654
Q ss_pred C
Q psy9997 320 E 320 (330)
Q Consensus 320 ~ 320 (330)
.
T Consensus 172 ~ 172 (173)
T d2fn4a1 172 E 172 (173)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8e-34 Score=232.77 Aligned_cols=103 Identities=27% Similarity=0.442 Sum_probs=95.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+++..+++.++++++++++|||+++++||+++. .|++++.++.+++|+++||||+|+..+ ++++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~Dl~~~------------~~v~~~~ 128 (164)
T d1z2aa1 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEE 128 (164)
T ss_dssp GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHH
T ss_pred cchhhhhhhhhccCceEEEEEeccchhhhhhcc-cccccccccCCCceEEEeeccCCcccc------------eeeeehh
Confidence 666677777889999999999999999999998 899999988889999999999999765 8899999
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+++++++++ ++|+|+||++|.||+++|+.+++.+++
T Consensus 129 ~~~~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~lq 164 (164)
T d1z2aa1 129 AEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 164 (164)
T ss_dssp HHHHHHHHT-CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred hHHHHHHcC-CEEEEeccCCCcCHHHHHHHHHHHHhC
Confidence 999999998 699999999999999999999999875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-34 Score=235.48 Aligned_cols=162 Identities=27% Similarity=0.477 Sum_probs=136.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+|||+++|++|||||||+.||+.+.|.+++.||+++.+.....+++.
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~--------------------------------- 48 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS--------------------------------- 48 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTE---------------------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccc---------------------------------
Confidence 68999999999999999999999999999999987666544444443
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+.+.+||++|+
T Consensus 49 ---------------------------~~~l~~~d~~g~----------------------------------------- 60 (171)
T d2erxa1 49 ---------------------------ICTLQITDTTGS----------------------------------------- 60 (171)
T ss_dssp ---------------------------EEEEEEEECCSC-----------------------------------------
T ss_pred ---------------------------cceecccccccc-----------------------------------------
Confidence 344556677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
+.+...+..+++.+|++++|||+++++||+++. .|+..+.+
T Consensus 61 --------------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~-~~~~~~~~ 101 (171)
T d2erxa1 61 --------------------------------------HQFPAMQRLSISKGHAFILVYSITSRQSLEELK-PIYEQICE 101 (171)
T ss_dssp --------------------------------------SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTH-HHHHHHHH
T ss_pred --------------------------------------ccccccccccccceeEEEEEeecccccchhccc-chhhhhhh
Confidence 666666777888999999999999999999998 78877755
Q ss_pred c---CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 243 H---CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 243 ~---~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
. ..++|++|||||+|+... ++++.++++++++.++ ++|+|+||++|.||+++|+.+++.+.+
T Consensus 102 ~~~~~~~~piilVgnK~Dl~~~------------~~v~~~e~~~~~~~~~-~~~~e~Sak~~~~v~e~f~~l~~~~~~ 166 (171)
T d2erxa1 102 IKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKR 166 (171)
T ss_dssp HHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred hhccCCCCcEEEEeeccccccc------------ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 3 367999999999999765 8899999999999998 699999999999999999999986643
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-33 Score=232.00 Aligned_cols=162 Identities=30% Similarity=0.578 Sum_probs=133.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee-EEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++||+|||||||+.||..+.|.+++.||++..+. +.+..
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~----------------------------------- 47 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI----------------------------------- 47 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-----------------------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeecc-----------------------------------
Confidence 589999999999999999999999999999999864442 23222
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++..+.+.+||++|+
T Consensus 48 -------------------------~~~~~~~~~~d~~g~---------------------------------------- 62 (167)
T d1z08a1 48 -------------------------GGKRVNLAIWDTAGQ---------------------------------------- 62 (167)
T ss_dssp -------------------------SSCEEEEEEEECCCC----------------------------------------
T ss_pred -------------------------CCccceeeeeccCCc----------------------------------------
Confidence 334455666777777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
+.+..+++.+++++|++++|||+++++||+++. .|+..+.
T Consensus 63 ---------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~-~~~~~~~ 102 (167)
T d1z08a1 63 ---------------------------------------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELR 102 (167)
T ss_dssp ----------------------------------------------CCSSTTCSEEEEEEETTCHHHHHHHH-HHHHHHH
T ss_pred ---------------------------------------ceecccchhhccCCceeEEEEeCCchhHHHhhh-hhhhhcc
Confidence 667777888899999999999999999999998 7887776
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
... ...|+++||||+|+..+ ++++.+++++++++++ ++|+|+||++|.||+++|+.+++++++
T Consensus 103 ~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~e~~~~a~~~~-~~~~e~Sak~~~~v~e~F~~l~~~i~~ 166 (167)
T d1z08a1 103 KMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 166 (167)
T ss_dssp HHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred cccccccceeeeccccccccc------------cccchHHHHHHHHHcC-CeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence 553 68899999999999876 8899999999999998 699999999999999999999999986
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-34 Score=233.68 Aligned_cols=161 Identities=30% Similarity=0.473 Sum_probs=133.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.||+++.|.++|.||++..|...+..++.
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~--------------------------------- 48 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE--------------------------------- 48 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTE---------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccccccccc---------------------------------
Confidence 68999999999999999999999999999999987776655444444
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+.+++||++|+
T Consensus 49 ---------------------------~~~l~i~D~~g~----------------------------------------- 60 (168)
T d2atva1 49 ---------------------------VVSMEILDTAGQ----------------------------------------- 60 (168)
T ss_dssp ---------------------------EEEEEEEECCCC-----------------------------------------
T ss_pred ---------------------------ceEEEEeecccc-----------------------------------------
Confidence 445556677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
+.+. .+..++++++++++|||+++++||+++. .|...+..
T Consensus 61 --------------------------------------~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~ 100 (168)
T d2atva1 61 --------------------------------------EDTI-QREGHMRWGEGFVLVYDITDRGSFEEVL-PLKNILDE 100 (168)
T ss_dssp --------------------------------------CCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHH-HHHHHHHH
T ss_pred --------------------------------------cccc-cchhhhcccccceeecccCCccchhhhh-hhcccccc
Confidence 3322 2344677899999999999999999998 67655443
Q ss_pred c--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC-CHHHHHHHHHHHhcC
Q psy9997 243 H--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK-GLKNVFDEAILAALE 317 (330)
Q Consensus 243 ~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~i~~ 317 (330)
. ..+.|+++||||+|+..+ +.++.+++++++++++ ++|+|+||++|. ||+++|..+++.+.+
T Consensus 101 ~~~~~~~piilvgnK~Dl~~~------------r~V~~~e~~~~a~~~~-~~~~e~Saktg~gnV~e~F~~l~~~i~~ 165 (168)
T d2atva1 101 IKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRR 165 (168)
T ss_dssp HHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred cccccCcceeeeccchhhhhh------------ccCcHHHHHHHHHHhC-CeEEEEccccCCcCHHHHHHHHHHHHHH
Confidence 3 368999999999999765 8899999999999998 799999999998 599999999998864
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.5e-33 Score=228.98 Aligned_cols=162 Identities=22% Similarity=0.437 Sum_probs=138.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee-EEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+++||++||++|||||||+.||..+.|.+++.+|++..+. .....+
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~-------------------------------- 49 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-------------------------------- 49 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET--------------------------------
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccccccccc--------------------------------
Confidence 78999999999999999999999999999999999865543 222222
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+....+.+||++|+
T Consensus 50 ----------------------------~~~~~~~i~d~~g~-------------------------------------- 63 (167)
T d1z0ja1 50 ----------------------------NELHKFLIWDTAGL-------------------------------------- 63 (167)
T ss_dssp ----------------------------TEEEEEEEEEECCS--------------------------------------
T ss_pred ----------------------------ccccceeeeecCCc--------------------------------------
Confidence 33344556677777
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+++..++..+++.++++++|||++++++|+++. .|...
T Consensus 64 -----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~ 101 (167)
T d1z0ja1 64 -----------------------------------------ERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRE 101 (167)
T ss_dssp -----------------------------------------GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHH
T ss_pred -----------------------------------------hhhhHHHHHHHhhccceEEEeeechhhhhhhHH-Hhhhh
Confidence 677777888899999999999999999999998 78777
Q ss_pred hhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 240 ITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 240 i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+.... ++.|+++||||+|+..+ +.++.++++++++.++ ++|+|+||++|.||+++|..+++++
T Consensus 102 ~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 102 LRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVETSAKNAININELFIEISRRI 165 (167)
T ss_dssp HHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred hhhccCCcceEEEecccchhccc------------cchhHHHHHHHHHHcC-CEEEEEecCCCCCHHHHHHHHHHhC
Confidence 66554 68999999999999765 8899999999999998 6999999999999999999999887
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=230.24 Aligned_cols=164 Identities=34% Similarity=0.578 Sum_probs=140.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|++|||+++|++|||||||+.||+++.|++++.||+++.+...+...+.
T Consensus 1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (166)
T d1ctqa_ 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE------------------------------- 49 (166)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTE-------------------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeece-------------------------------
Confidence 8999999999999999999999999999999999987665544443333
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+.+.+||++|+
T Consensus 50 -----------------------------~~~l~~~d~~~~--------------------------------------- 61 (166)
T d1ctqa_ 50 -----------------------------TCLLDILDTAGQ--------------------------------------- 61 (166)
T ss_dssp -----------------------------EEEEEEEEECCC---------------------------------------
T ss_pred -----------------------------eeeeeeeeccCc---------------------------------------
Confidence 344556677777
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.+...++.+++.++++++|||++++.+|+.+. .|+..+
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~-~~~~~i 100 (166)
T d1ctqa_ 62 ----------------------------------------EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH-QYREQI 100 (166)
T ss_dssp ----------------------------------------GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHH-HHHHHH
T ss_pred ----------------------------------------cccccchhhhhhcccccceeecccccccHHHHH-HHHHHH
Confidence 666667777888999999999999999999998 899998
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+.. +++|+++||||+|+.. +.+..++++++++.++ ++|+|+||++|.||+++|+.+++++.++
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~e~Sak~g~gi~e~f~~i~~~i~~~ 166 (166)
T d1ctqa_ 101 KRVKDSDDVPMVLVGNKCDLAA-------------RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQH 166 (166)
T ss_dssp HHHHTCSSCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHhcCCCCCeEEEEeccccccc-------------ccccHHHHHHHHHHhC-CeEEEEcCCCCcCHHHHHHHHHHHHHhC
Confidence 8754 5799999999999964 6788899999999998 6999999999999999999999988653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-33 Score=232.10 Aligned_cols=104 Identities=20% Similarity=0.362 Sum_probs=89.7
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~ 278 (330)
+.+..++..+++++|++++|||++++.||+++. .|+.++.... .++|+++||||+|+... ++++.
T Consensus 59 e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~------------~~v~~ 125 (168)
T d2gjsa1 59 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRS------------REVSV 125 (168)
T ss_dssp -----CHHHHHTSCSEEEEEEETTCHHHHHHHH-HHHHHHHHHCC--CCCEEEEEECTTCGGG------------CCSCH
T ss_pred cccceecccchhhhhhhceeccccccccccccc-cccchhhcccccccceEEEeecccchhhh------------cchhH
Confidence 667777788899999999999999999999998 8999987654 57899999999999765 78999
Q ss_pred HHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 279 EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 279 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++++++.++ ++|+|+||++|.||+++|+.+++.+.++
T Consensus 126 ~~~~~~~~~~~-~~~~e~Sak~~~~v~~~f~~l~~~i~~~ 164 (168)
T d2gjsa1 126 DEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRLR 164 (168)
T ss_dssp HHHHHHHHHHT-SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999998 6999999999999999999999988653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-34 Score=235.10 Aligned_cols=164 Identities=32% Similarity=0.566 Sum_probs=145.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+++||+++|++|||||||++||+++.|...+.||.++.+...+.+++..+.+.+||++|+
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------- 63 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ-------------------- 63 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeeccccccccccccccc--------------------
Confidence 468999999999999999999999999999999999999999999999999999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...++.+++.+|++++||
T Consensus 64 -----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~ 84 (171)
T d2erya1 64 -----------------------------------------------------------EEFGAMREQYMRTGEGFLLVF 84 (171)
T ss_dssp -------------------------------------------------------------CCHHHHHHHHHCSEEEEEE
T ss_pred -----------------------------------------------------------ccccccccccccccceEEEee
Confidence 556666677788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+++++||+.+. .|+.++.+. ....|+|+||||+|+..+ +.++.++++++++.++ ++|+|+||+
T Consensus 85 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak 150 (171)
T d2erya1 85 SVTDRGSFEEIY-KFQRQILRVKDRDEFPMILIGNKADLDHQ------------RQVTQEEGQQLARQLK-VTYMEASAK 150 (171)
T ss_dssp ETTCHHHHHTHH-HHHHHHHHHHTSSCCSEEEEEECTTCTTS------------CSSCHHHHHHHHHHTT-CEEEECBTT
T ss_pred ccccccchhhHH-HHhHHHHhhcccCCCCEEEEEeccchhhh------------ccchHHHHHHHHHHcC-CEEEEEcCC
Confidence 999999999998 888877654 357999999999999765 8899999999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.||+++|+.+++.+.+.
T Consensus 151 ~~~~i~e~f~~l~~~i~k~ 169 (171)
T d2erya1 151 IRMNVDQAFHELVRVIRKF 169 (171)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 9999999999999988643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-34 Score=236.51 Aligned_cols=164 Identities=26% Similarity=0.458 Sum_probs=139.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
-++||+++|++|||||||++||+.+.|...+.||++..+ ...+..++..+.+.+||++|+
T Consensus 2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~------------------- 62 (170)
T d1i2ma_ 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ------------------- 62 (170)
T ss_dssp EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTH-------------------
T ss_pred eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccc-------------------
Confidence 368999999999999999999999999999999998666 457778888999999999988
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..+++.++++++++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 63 ------------------------------------------------------------EKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp ------------------------------------------------------------HHHSSCGGGGTTTCCEEEEE
T ss_pred ------------------------------------------------------------cccceecchhcccccchhhc
Confidence 66777788889999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||+++++||+++. .|+.++.+..+++|+++||||+|+... +. .+++..+++.++ ++|+|+||++
T Consensus 83 ~d~~~~~Sf~~~~-~~~~~~~~~~~~~piilvgnK~Dl~~~------------~~--~~~~~~~~~~~~-~~~~e~Sak~ 146 (170)
T d1i2ma_ 83 FDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR------------KV--KAKSIVFHRKKN-LQYYDISAKS 146 (170)
T ss_dssp EETTSGGGGTTHH-HHHHHHHHHHCSCCEEEEEECCCCSCS------------CC--TTTSHHHHSSCS-SEEEEEBTTT
T ss_pred cccccccccchhH-HHHHHHhhccCCCceeeecchhhhhhh------------hh--hhHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999998 899999888889999999999999754 22 234567888877 7999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCC
Q psy9997 301 QKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~ 320 (330)
|.||+++|+.+++.+++.+.
T Consensus 147 ~~~v~e~f~~l~~~l~~~~~ 166 (170)
T d1i2ma_ 147 NYNFEKPFLWLARKLIGDPN 166 (170)
T ss_dssp TBTTTHHHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHccCCC
Confidence 99999999999999986543
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-32 Score=226.99 Aligned_cols=108 Identities=22% Similarity=0.435 Sum_probs=93.6
Q ss_pred cccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 195 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
||++|++++ ++..+++++|++++|||+++++||+++. .|...+.... +++|+++||||+|+..+
T Consensus 61 ~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~----------- 126 (172)
T d2g3ya1 61 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRC----------- 126 (172)
T ss_dssp TTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGG-----------
T ss_pred ccccccccc--cccccccccceeeeeecccccchhhhhh-hhhhhhhhccccCCceEEEEecccccccc-----------
Confidence 344555666 4556789999999999999999999998 8988877643 68999999999999765
Q ss_pred CCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 273 QKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 273 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++.++++++++.++ ++|+|+||++|.||+++|+.+++.+..+
T Consensus 127 -~~v~~~~~~~~a~~~~-~~~~e~Sak~g~~i~~~f~~l~~~i~~r 170 (172)
T d2g3ya1 127 -REVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVRLR 170 (172)
T ss_dssp -CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -ccccHHHHHHHHHHcC-CeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence 8899999999999998 6999999999999999999999988643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=7.4e-33 Score=228.13 Aligned_cols=163 Identities=28% Similarity=0.522 Sum_probs=145.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++||..++|...+.++.+..+ ...+...+..+.+++|||+|+
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~-------------------- 64 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ-------------------- 64 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCc--------------------
Confidence 58999999999999999999999999999999997555 557788888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+..+++.++++||++|+||
T Consensus 65 -----------------------------------------------------------e~~~~~~~~~~~~ad~~ilv~ 85 (169)
T d3raba_ 65 -----------------------------------------------------------ERYRTITTAYYRGAMGFILMY 85 (169)
T ss_dssp -----------------------------------------------------------GGGHHHHHTTTTTCCEEEEEE
T ss_pred -----------------------------------------------------------hhhHHHHHHHHhcCCEEEEEE
Confidence 667777888899999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++++++..+. .|...+.... .+.|+++||||+|+... +.++.+++++++++++ ++|+|+||++
T Consensus 86 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak~ 151 (169)
T d3raba_ 86 DITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDE------------RVVSSERGRQLADHLG-FEFFEASAKD 151 (169)
T ss_dssp ETTCHHHHHTHH-HHHHHHHHHCCSCCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred ECccchhhhhhh-hhhhhhhcccCCcceEEEEEeecccccc------------cccchhhhHHHHHHcC-CEEEEecCCC
Confidence 999999999998 6776665544 68999999999998765 7899999999999998 6999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.||+++|+.+++.++++
T Consensus 152 g~gv~e~f~~l~~~i~ek 169 (169)
T d3raba_ 152 NINVKQTFERLVDVICEK 169 (169)
T ss_dssp TBSHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.6e-33 Score=230.41 Aligned_cols=162 Identities=28% Similarity=0.515 Sum_probs=145.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||+++|..+.|.+.+.++.+..+ ...+.+++..+.+.+|||+|+
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------- 64 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ-------------------- 64 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 58999999999999999999999999999999997666 458889999999999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.|..+++.++++++++++||
T Consensus 65 -----------------------------------------------------------e~~~~~~~~~~~~~~~~i~v~ 85 (171)
T d2ew1a1 65 -----------------------------------------------------------ERFRSITQSYYRSANALILTY 85 (171)
T ss_dssp -----------------------------------------------------------GGGHHHHGGGSTTCSEEEEEE
T ss_pred -----------------------------------------------------------hhhHHHHHHHHhccceEEEee
Confidence 777777888899999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++.+|+++. .|...+.+.. ..+|+++||||+|+... +++..++++.+++.++ ++|++|||++
T Consensus 86 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ilvgnK~D~~~~------------~~v~~~~~~~~~~~~~-~~~~~~SAkt 151 (171)
T d2ew1a1 86 DITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAER------------REVSQQRAEEFSEAQD-MYYLETSAKE 151 (171)
T ss_dssp ETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CCEEECCTTT
T ss_pred ecccchhhhhhh-hhhhhhcccccccccEEEEEeecccccc------------cchhhhHHHHHHHhCC-CEEEEEccCC
Confidence 999999999998 6777776554 67999999999998765 7899999999999998 6999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.||+++|..++++++.
T Consensus 152 g~gV~e~f~~l~~~l~~ 168 (171)
T d2ew1a1 152 SDNVEKLFLDLACRLIS 168 (171)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988865
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.5e-32 Score=222.77 Aligned_cols=102 Identities=27% Similarity=0.501 Sum_probs=91.4
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
+.+...++.++.+++++++|||++++.||+++. .|+.++.... +++|+++||||+|+... +.+..+
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~~~~~ 126 (164)
T d1yzqa1 60 ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK------------RQVSIE 126 (164)
T ss_dssp GGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGGG------------CCSCHH
T ss_pred chhccchHHHhhccceEEEeeccccccchhhhH-hhHHHHHHhcCCCceEEEEecccchhhh------------hhhhHH
Confidence 667777788899999999999999999999998 7887776654 78999999999999765 788999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
++.++++.++ ++|+|+||++|.||+++|+++++++-
T Consensus 127 ~~~~~~~~~~-~~~~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 127 EGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHcC-CEEEEecCCCCcCHHHHHHHHHHhhC
Confidence 9999999998 68999999999999999999998763
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=7.8e-32 Score=222.06 Aligned_cols=166 Identities=30% Similarity=0.537 Sum_probs=139.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.++||++||++|||||||+.||..+.|.+.+.||++..+ .+.+..++.
T Consensus 1 ~~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~------------------------------ 50 (170)
T d1ek0a_ 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH------------------------------ 50 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE------------------------------
T ss_pred CcEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccc------------------------------
Confidence 3589999999999999999999999999999999987555 334444433
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.+.+.+||++|+
T Consensus 51 ------------------------------~~~l~i~d~~g~-------------------------------------- 62 (170)
T d1ek0a_ 51 ------------------------------TVKFEIWDTAGQ-------------------------------------- 62 (170)
T ss_dssp ------------------------------EEEEEEEEECCS--------------------------------------
T ss_pred ------------------------------cccccccccCCc--------------------------------------
Confidence 445556677777
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+.+..+++.+++.+|++++|||++++.||+++. .|..+
T Consensus 63 -----------------------------------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~ 100 (170)
T d1ek0a_ 63 -----------------------------------------ERFASLAPMYYRNAQAALVVYDVTKPQSFIKAR-HWVKE 100 (170)
T ss_dssp -----------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHH
T ss_pred -----------------------------------------hhHHHHHHHHHhccceEEEEEeCCcccchhhhh-hhhhh
Confidence 667777788899999999999999999999998 77766
Q ss_pred hhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 240 ITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 240 i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+... ....|+++|+||+|+... ...+.++.++++++++.++ ++|+|+||++|.||+++|..++++|.
T Consensus 101 ~~~~~~~~~~~~~v~nk~d~~~~---------~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 101 LHEQASKDIIIALVGNKIDMLQE---------GGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGS---------SCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred hccccccccceeeeecccccccc---------cchhhhhHHHHHHHHHHcC-CEEEEecCCCCcCHHHHHHHHHHHhc
Confidence 5554 468999999999999765 3348899999999999998 69999999999999999999987763
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=9.5e-32 Score=221.60 Aligned_cols=103 Identities=22% Similarity=0.457 Sum_probs=92.8
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
+.+..+++.++++++++++|||++++++|+++. .|...+.+. .+++|+++||||+|+..+ +.++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~e 132 (170)
T d1r2qa_ 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK------------RAVDFQ 132 (170)
T ss_dssp GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHH
T ss_pred hhhhhhHHHHhhCcceEEEEeccchhhHHHHHH-HHhhhhhhccCCCceEEeeccccccccc------------ccccHH
Confidence 777777888899999999999999999999998 677776554 478999999999999765 889999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+++++++.++ ++|+|+||++|.||+++|+.+++.+.+
T Consensus 133 ~~~~~~~~~~-~~~~e~SAk~g~~V~e~f~~l~~~i~~ 169 (170)
T d1r2qa_ 133 EAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred HHHHHHHhcC-CEEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999988 799999999999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=8.8e-32 Score=220.93 Aligned_cols=102 Identities=20% Similarity=0.424 Sum_probs=91.2
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
+.+..++..+++++|++++|||+++++||+.+. .|+..+.+.. ...|+++||||+|+... +.+..+
T Consensus 64 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~~~~~ 130 (166)
T d1z0fa1 64 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQ------------RDVTYE 130 (166)
T ss_dssp GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHH
T ss_pred hhHHHHHHHHhcCCcEEEEEeccCchHHHHHHH-HHHHHHHhhccccceEEEEcccccchhh------------cccHHH
Confidence 677777888899999999999999999999998 7887776654 68999999999999765 778899
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+++.+++.++ ++|+|+||++|.||+++|+.+++++.
T Consensus 131 ~~~~~~~~~~-~~~~e~Saktg~~v~e~f~~i~~~i~ 166 (166)
T d1z0fa1 131 EAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIY 166 (166)
T ss_dssp HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 9999999998 69999999999999999999999874
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.8e-32 Score=226.61 Aligned_cols=163 Identities=25% Similarity=0.482 Sum_probs=139.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++||..++|...+.++.+.... ......+..+.+.+||++|+
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~-------------------- 62 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ-------------------- 62 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCc--------------------
Confidence 489999999999999999999999999999888866554 46667778888888888888
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+..+++.+++.+|++++||
T Consensus 63 -----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~ 83 (173)
T d2a5ja1 63 -----------------------------------------------------------ESFRSITRSYYRGAAGALLVY 83 (173)
T ss_dssp -----------------------------------------------------------GGTSCCCHHHHTTCSEEEEEE
T ss_pred -----------------------------------------------------------cchhhHHHHHhhccCEEEEEE
Confidence 667777888889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++++||+++. .|+..+.+.. .++|++|||||+|+... +.+..++++.+++.++ ++|+|+||++
T Consensus 84 d~~~~~sf~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~a~~~~-~~~~e~Sa~t 149 (173)
T d2a5ja1 84 DITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESR------------RDVKREEGEAFAREHG-LIFMETSAKT 149 (173)
T ss_dssp ETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEECTTT
T ss_pred eecChHHHHhHH-HHHHHHHHhCCCCCeEEEEecCCchhhh------------hhhHHHHHHHHHHHcC-CEEEEecCCC
Confidence 999999999998 7887776654 68999999999999765 7889999999999998 6999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.||+++|..+++.++++
T Consensus 150 g~~V~e~f~~i~~~i~~~ 167 (173)
T d2a5ja1 150 ACNVEEAFINTAKEIYRK 167 (173)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.7e-32 Score=224.31 Aligned_cols=165 Identities=31% Similarity=0.539 Sum_probs=130.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEE--ECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM--IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
-+||+++|++|||||||+++|++++|.+.+.||.+..+..... .+.....+.+||++|+
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~------------------- 62 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ------------------- 62 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCc-------------------
Confidence 3799999999999999999999999999999988776655332 3344556677777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++.++++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~~~~ilv 82 (175)
T d1ky3a_ 63 ------------------------------------------------------------ERFQSLGVAFYRGADCCVLV 82 (175)
T ss_dssp --------------------------------------------------------------------CCSTTCCEEEEE
T ss_pred ------------------------------------------------------------hhhhhHHHHHhhccceEEEE
Confidence 66777778889999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
||++++.||+.+. .|+.++.... .++|+++||||+|+... .+.++.++++++++.++.++|+|
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~~~~~~e 150 (175)
T d1ky3a_ 83 YDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIPLFL 150 (175)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----------GCCSCHHHHHHHHHHTTSCCEEE
T ss_pred eecccccccchhh-hcchhhhhhhhhcccccCcEEEEecccchhhh-----------hcchhHHHHHHHHHHcCCCeEEE
Confidence 9999999999998 8999886542 47899999999999754 15588899999999998789999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+||++|.||+++|+.++++++++
T Consensus 151 ~SA~~g~gv~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 151 TSAKNAINVDTAFEEIARSALQQ 173 (175)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.9e-32 Score=226.56 Aligned_cols=108 Identities=26% Similarity=0.495 Sum_probs=95.8
Q ss_pred ccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCC
Q psy9997 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273 (330)
Q Consensus 196 D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~ 273 (330)
|++|++.|..+++.+++++|++++|||++++.+|+.+. .|+.++..+. ..+|+++||||+|+...
T Consensus 70 dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~------------ 136 (186)
T d2f7sa1 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQ------------ 136 (186)
T ss_dssp EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGG------------
T ss_pred cCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeee-eccchhhhhccCCCceEEEEeeeccchhh------------
Confidence 33333888888888999999999999999999999998 8988877653 57899999999999765
Q ss_pred CCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 274 KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 274 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++++.+++.+++++++ ++|+|+||++|.||+++|+.+++.+.+
T Consensus 137 ~~v~~~e~~~~~~~~~-~~~~e~Sak~~~~i~e~f~~l~~~i~~ 179 (186)
T d2f7sa1 137 REVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIMK 179 (186)
T ss_dssp CCSCHHHHHHHHHHTT-CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999998 699999999999999999999998875
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.9e-32 Score=224.13 Aligned_cols=164 Identities=24% Similarity=0.478 Sum_probs=146.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++||..++|.+.+.||.+..+. ..+..++....+.+||++|+
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------------------- 64 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ-------------------- 64 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS--------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCc--------------------
Confidence 589999999999999999999999999999999987764 46777888889999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..+++.+++.++++++||
T Consensus 65 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 85 (174)
T d2bmea1 65 -----------------------------------------------------------ERFRSVTRSYYRGAAGALLVY 85 (174)
T ss_dssp -----------------------------------------------------------GGGHHHHHTTSTTCSEEEEEE
T ss_pred -----------------------------------------------------------hhhhhhHHHHhhhCCEEEEEE
Confidence 666677778899999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|.+++++|.++. .|+..+.... +++|+++||||+|+..+ +++..+++.++++.++ ++|+|+||++
T Consensus 86 d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sak~ 151 (174)
T d2bmea1 86 DITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETSALT 151 (174)
T ss_dssp ETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred ecccchhHHHHh-hhhcccccccCCceEEEEEEecccccch------------hchhhhHHHHHHHhCC-CEEEEeeCCC
Confidence 999999999998 7877776654 68999999999999765 7889999999999997 7999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC
Q psy9997 301 QKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~ 319 (330)
|.|++++|+.++++++++.
T Consensus 152 ~~gi~e~f~~l~~~i~~~~ 170 (174)
T d2bmea1 152 GENVEEAFVQCARKILNKI 170 (174)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHH
Confidence 9999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.5e-31 Score=219.69 Aligned_cols=163 Identities=26% Similarity=0.538 Sum_probs=118.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|.++.|...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------- 65 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ------------------- 65 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 347999999999999999999999999999999998666 558889999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..+++.+++.+|++|+|
T Consensus 66 ------------------------------------------------------------e~~~~~~~~~~~~~~~~i~v 85 (173)
T d2fu5c1 66 ------------------------------------------------------------ERFRTITTAYYRGAMGIMLV 85 (173)
T ss_dssp ------------------------------------------------------------------CCTTTTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhHHHHHHhccCCCEEEEE
Confidence 67777888889999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.||+.+. .|+..+... ..+.|+++|+||.|+... +....+++.+++...+ ++|+|+||+
T Consensus 86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~~k~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 151 (173)
T d2fu5c1 86 YDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETSAK 151 (173)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred EECCChhhHHHHH-HHHHHhhhhccCCceEEEEEecccchhh------------cccHHHHHHHHHHhcC-CEEEEEeCC
Confidence 9999999999998 787777654 468999999999999876 7788889999999998 799999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.||+++|+++++.+.+
T Consensus 152 ~g~gv~e~f~~l~~~i~~ 169 (173)
T d2fu5c1 152 ANINVENAFFTLARDIKA 169 (173)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998854
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.9e-30 Score=214.86 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=85.0
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 285 (330)
+++.+|++++|||+++++||+++. .|+..+.... .++|+++||||.|+... .++.++.+++++++
T Consensus 67 ~~~~ad~~ilVfd~~~~~Sf~~~~-~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~----------~~~~v~~~~~~~~~ 135 (175)
T d2bmja1 67 FSGWADAVIFVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISAS----------SPRVVGDARARALC 135 (175)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHH-HHHHHHHHHCC--CCCCEEEEEEECTTCCSS----------SCCCSCHHHHHHHH
T ss_pred cccccceeEEEeecccchhhhhhH-HHHHHHHHHhhcccCCccEEEEeeecCcchh----------hhcchhHHHHHHHH
Confidence 567799999999999999999998 8988876542 56899999999998654 23789999999998
Q ss_pred HHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 286 KELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 286 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+.+.++|+|+||++|.||+++|..+++.+++.+
T Consensus 136 ~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 169 (175)
T d2bmja1 136 ADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169 (175)
T ss_dssp HTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhh
Confidence 7766689999999999999999999999987543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-30 Score=214.42 Aligned_cols=103 Identities=29% Similarity=0.517 Sum_probs=91.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKP 275 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~ 275 (330)
..+...+..++..+++++++||++++.||+.+. .|++++.... .++|++|||||+|+.+ +.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-------------~~ 131 (174)
T d1wmsa_ 66 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQ 131 (174)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------------CS
T ss_pred ceehhhhhhhhhccceEEEEEeeecccccchhh-hHHHHHHHHhccccCCCceEEEeccccchhh-------------cc
Confidence 555666777888999999999999999999998 8998876542 4689999999999953 77
Q ss_pred cCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 276 ISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 276 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++.+++++++++.+.++|+|+||++|.||+++|+.+++.++.
T Consensus 132 v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 132 VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173 (174)
T ss_dssp SCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999877899999999999999999999999875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.9e-31 Score=222.02 Aligned_cols=164 Identities=26% Similarity=0.540 Sum_probs=146.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+|+|++|||||||+++|.++.|...+.||.+..+. ..+.+++..+.+.+|||+|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~------------------- 65 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ------------------- 65 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT-------------------
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCc-------------------
Confidence 4589999999999999999999999999999999988875 48889999999999999999
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..+++.++++|+++++|
T Consensus 66 ------------------------------------------------------------e~~~~~~~~~~~~a~~~i~v 85 (194)
T d2bcgy1 66 ------------------------------------------------------------ERFRTITSSYYRGSHGIIIV 85 (194)
T ss_dssp ------------------------------------------------------------TTTTCCCGGGGTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhHHHHHHHhccCCEEEEE
Confidence 66667777888999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhh-cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITH-HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++++|..+. .|...+.+ ...++|+++||||+|+... +.+..+++..+++..+ ..|+|+||+
T Consensus 86 ~d~t~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~SAk 151 (194)
T d2bcgy1 86 YDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MPFLETSAL 151 (194)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred EeCcchhhhhhHh-hhhhhhhhcccCCceEEEEEeccccccc------------cchhHHHHhhhhhccC-cceEEEecC
Confidence 9999999999998 67666655 4478999999999999775 7889999999999987 689999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.||+++|+.+++.+.+.
T Consensus 152 ~g~gi~e~f~~l~~~i~~~ 170 (194)
T d2bcgy1 152 DSTNVEDAFLTMARQIKES 170 (194)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHH
Confidence 9999999999999988743
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-31 Score=221.49 Aligned_cols=166 Identities=26% Similarity=0.488 Sum_probs=143.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||++||.+++|...+.++.+... ...+.+++..+.+.+||++|+
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~------------------- 63 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ------------------- 63 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG-------------------
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCc-------------------
Confidence 358999999999999999999999999999988886555 557888999999999999988
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.|...+..++++++++++|
T Consensus 64 ------------------------------------------------------------e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 64 ------------------------------------------------------------ERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp ------------------------------------------------------------GGTTCCCHHHHTTCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHhhccCeEEEE
Confidence 66777777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||+++++||+.+. .|+..+.++. +++|+++||||+|+... +....+.+..+.+.++ .+|+|+||+
T Consensus 84 ~d~~~~~S~~~~~-~~~~~i~~~~~~~~piilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 149 (175)
T d2f9la1 84 YDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIETSAL 149 (175)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred EECCCcccchhHH-HHHHHHHHhcCCCCcEEEEEeeeccccc------------ccchHHHHHHhhcccC-ceEEEEecC
Confidence 9999999999998 8888887775 67999999999999765 6677888888888887 799999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+|.|++++|+.+++.+.+...
T Consensus 150 ~g~~i~e~f~~l~~~i~~~~~ 170 (175)
T d2f9la1 150 DSTNVEEAFKNILTEIYRIVS 170 (175)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHhh
Confidence 999999999999998864433
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.5e-31 Score=218.45 Aligned_cols=168 Identities=27% Similarity=0.550 Sum_probs=149.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+||+++|++|||||||+++|.+++|.+.+.++.+..+. ..+.+++..+.+.+|||+|+
T Consensus 4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 66 (177)
T d1x3sa1 4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ----------------- 66 (177)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS-----------------
T ss_pred ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCc-----------------
Confidence 345799999999999999999999999999999998877764 47888999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..+++.+++.+|+++
T Consensus 67 --------------------------------------------------------------~~~~~~~~~~~~~~~~ii 84 (177)
T d1x3sa1 67 --------------------------------------------------------------ERFRTLTPSYYRGAQGVI 84 (177)
T ss_dssp --------------------------------------------------------------GGGCCSHHHHHTTCCEEE
T ss_pred --------------------------------------------------------------hhhHHHHHHHHhcCCEEE
Confidence 666677777889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+|+.+. .|+.++.+.. ...|+++++||.|... +.+..++++++++.++ +.|+++
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~i~~~~nk~d~~~-------------~~v~~~~~~~~~~~~~-~~~~e~ 149 (177)
T d1x3sa1 85 LVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEA 149 (177)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEECCCccccccch-hhhhhhcccccccceeeEEEeecccccc-------------ccccHHHHHHHHHHCC-CEEEEE
Confidence 999999999999998 8988887654 4689999999999754 7889999999999998 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
||++|.||+++|+.++++++++++-
T Consensus 150 Sa~tg~gv~e~f~~l~~~l~~~p~l 174 (177)
T d1x3sa1 150 SAKTCDGVQCAFEELVEKIIQTPGL 174 (177)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSGGG
T ss_pred eCCCCCCHHHHHHHHHHHHccCccc
Confidence 9999999999999999999988653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-29 Score=208.68 Aligned_cols=103 Identities=25% Similarity=0.465 Sum_probs=84.8
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
+.+..++..+++++|++++|||+++++||..+. .|...+... ....|+++|+||+|+... +.++.+
T Consensus 67 e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~~k~d~~~~------------~~v~~~ 133 (170)
T d2g6ba1 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKRE 133 (170)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHH
T ss_pred hhhHHHHHHhhcCCceeEEEecCCcccchhhhh-hhhhhhhhccCCCceEEEEEeeechhhc------------ccccHH
Confidence 677777888899999999999999999999998 666555444 468899999999999775 789999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++..+++.++ ++|+|+||++|.||+++|+.+++.+.+
T Consensus 134 ~~~~~~~~~~-~~~~e~Sak~g~gi~e~f~~l~~~i~k 170 (170)
T d2g6ba1 134 DGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHcCC
Confidence 9999999998 699999999999999999999998753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=7.2e-30 Score=209.00 Aligned_cols=93 Identities=20% Similarity=0.395 Sum_probs=82.2
Q ss_pred cccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH
Q psy9997 205 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE 282 (330)
Q Consensus 205 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 282 (330)
..++.+++++|++++|||+++++||+++. .|+.++.++. +++|++|||||+|+..+ ++++.++++
T Consensus 67 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~------------~~v~~~~~~ 133 (165)
T d1z06a1 67 SMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSA------------IQVPTDLAQ 133 (165)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGG------------CCSCHHHHH
T ss_pred ccceeeecCCCceEEEEEeehhhhhhhhh-hhhHHHHhhccCCCCeEEEEeccccchhc------------cchhHHHHH
Confidence 34556788999999999999999999998 8998887754 58999999999999775 789999999
Q ss_pred HHHHHhCCeeEEEEeecc---CCCHHHHHHHH
Q psy9997 283 KLAKELKAVKYVECSALT---QKGLKNVFDEA 311 (330)
Q Consensus 283 ~~~~~~~~~~~~e~Sa~~---~~~v~~~f~~l 311 (330)
+++++++ ++|+|+||++ +.||+++|+.|
T Consensus 134 ~~~~~~~-~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 134 KFADTHS-MPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp HHHHHTT-CCEEECCSSSGGGGSCHHHHHHHH
T ss_pred HHHHHCC-CEEEEEecccCCcCcCHHHHHHHh
Confidence 9999998 6999999997 45999999876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-30 Score=213.89 Aligned_cols=162 Identities=29% Similarity=0.584 Sum_probs=137.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-+||+++|++|||||||+++|++++|...+.||.+..+. ..+.+++..+.+.+|||+|+
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~-------------------- 61 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ-------------------- 61 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG--------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 379999999999999999999999999999999987775 58889999999999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+..+++.++++++++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T d1g16a_ 62 -----------------------------------------------------------ERFRTITTAYYRGAMGIILVY 82 (166)
T ss_dssp -----------------------------------------------------------GGTSCCCHHHHTTEEEEEEEE
T ss_pred -----------------------------------------------------------hhhHHHHHHHHhcCCEEEEEE
Confidence 667777788899999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|.++++||+++. .|...+.... ...|+++++||.|+.. +....++++++++.++ ++|+|+||++
T Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~i~~~~k~d~~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (166)
T d1g16a_ 83 DITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSAKN 147 (166)
T ss_dssp ETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBTTT
T ss_pred ECCCccCHHHHH-hhhhhhhccccCcceeeeecchhhhhh-------------hhhhHHHHHHHHHhcC-CeEEEECCCC
Confidence 999999999998 6666555544 6789999999999865 6778899999999998 7999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.||+++|+.+++.+.++
T Consensus 148 ~~~v~e~f~~l~~~i~~k 165 (166)
T d1g16a_ 148 DDNVNEIFFTLAKLIQEK 165 (166)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=3.8e-30 Score=214.64 Aligned_cols=164 Identities=27% Similarity=0.529 Sum_probs=143.6
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-+||+++|++|||||||+++|++++|...+.||.+..+. ......+..+.+.+||++|+
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------- 61 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ-------------------- 61 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSS--------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCc--------------------
Confidence 379999999999999999999999999999999977664 47778888888888998888
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...++.++..++++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 62 -----------------------------------------------------------ERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp -----------------------------------------------------------GGGSCSCCGGGTTCSEEEEEE
T ss_pred -----------------------------------------------------------ccccccccccccCccEEEEee
Confidence 666677788899999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
|.+++.+|+.+. .|++++..+. .++|+++||||+|+.. +.+..+++..++...+.++|+|+
T Consensus 83 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~e~ 148 (184)
T d1vg8a_ 83 DVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPYFET 148 (184)
T ss_dssp ETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCEEEC
T ss_pred cccchhhhhcch-hhHHHHHHHhccccccCCCEEEEEEeecccc-------------cchhHHHHHHHHHHhcCCeEEEE
Confidence 999999999998 8998886653 4689999999999864 56888888889887766899999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
||++|.||+++|+.+++.+++++
T Consensus 149 Sak~~~gI~e~f~~l~~~i~~~~ 171 (184)
T d1vg8a_ 149 SAKEAINVEQAFQTIARNALKQE 171 (184)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999988643
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.94 E-value=6.9e-29 Score=203.05 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=124.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+++||+++|++|||||||+++|.++++.+.+.||++..+.. ++...+.+.+||++|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~---~~~~~~~~~i~D~~G~-------------------- 57 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQ-------------------- 57 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCS--------------------
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee---eeeeeEEEEEeecccc--------------------
Confidence 47899999999999999999999999999999998766543 2334567888888887
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..++..++++++||
T Consensus 58 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 78 (164)
T d1zd9a1 58 -----------------------------------------------------------PRFRSMWERYCRGVSAIVYMV 78 (164)
T ss_dssp -----------------------------------------------------------HHHHTTHHHHHTTCSEEEEEE
T ss_pred -----------------------------------------------------------ccccccccccccccchhhccc
Confidence 666677777889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|++++++|+... .|+..+.+. .+++|++|||||.|+....+. +.+....+..+++..+ .+++|+||+
T Consensus 79 d~~~~~~~~~~~-~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~---------~~i~~~~~~~~~~~~~-~~~~e~Sa~ 147 (164)
T d1zd9a1 79 DAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---------KELIEKMNLSAIQDRE-ICCYSISCK 147 (164)
T ss_dssp ETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---------HHHHHHTTGGGCCSSC-EEEEECCTT
T ss_pred ccccccccchhh-hhhhhhhhhhcccCCcEEEEEeccccchhhhH---------HHHHHHHHHHHHHhCC-CEEEEEeCc
Confidence 999999999998 666665443 368999999999999754211 1111111222223333 689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++|++|++.+
T Consensus 148 ~g~gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 148 EKDNIDITLQWLIQHS 163 (164)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHcc
Confidence 9999999999998753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.93 E-value=7.8e-27 Score=190.72 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=120.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+.+||+++|++|||||||+++|.++.+ ..+.||.+.... .++...+.+.+||++|+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~---~~~~~~~~~~~~D~~G~-------------------- 56 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK---TLEHRGFKLNIWDVGGQ-------------------- 56 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE---EEEETTEEEEEEEECCS--------------------
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee---eccccccceeeeecCcc--------------------
Confidence 368999999999999999999988775 456677754332 23344567777888777
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.++..+..+++.++++++||
T Consensus 57 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 77 (165)
T d1ksha_ 57 -----------------------------------------------------------KSLRSYWRNYFESTDGLIWVV 77 (165)
T ss_dssp -----------------------------------------------------------HHHHTTGGGGCTTCSEEEEEE
T ss_pred -----------------------------------------------------------hhhhhHHHhhhhhhhcceeee
Confidence 667777778889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH--H--hCCeeEEEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK--E--LKAVKYVEC 296 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~--~~~~~~~e~ 296 (330)
|+++..++......|...+... ..++|+++|+||+|+... . ..++...... . ...++++++
T Consensus 78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T d1ksha_ 78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA------------L--SCNAIQEALELDSIRSHHWRIQGC 143 (165)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------C--CHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred ecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc------------c--CHHHHHHHHHhhhhhcCCCEEEEE
Confidence 9999999999885555555433 368999999999999754 2 2222222211 1 123679999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.||+++|++|++.+.+
T Consensus 144 Sa~~g~gv~e~~~~l~~~i~~ 164 (165)
T d1ksha_ 144 SAVTGEDLLPGIDWLLDDISS 164 (165)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.93 E-value=3.4e-27 Score=194.87 Aligned_cols=163 Identities=20% Similarity=0.280 Sum_probs=115.1
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.+.+.+||+++|++|||||||+++|.+++|... .++.+.. ...++...+.+.+||++|+
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~---~~~i~~~~~~~~i~d~~g~----------------- 70 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN---IKSVQSQGFKLNVWDIGGQ----------------- 70 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE---EEEEEETTEEEEEEECSSC-----------------
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeee---EEEeccCCeeEeEeecccc-----------------
Confidence 345679999999999999999999999887432 2222221 1222333456666666666
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.++..+..+++.+|+++
T Consensus 71 --------------------------------------------------------------~~~~~~~~~~~~~~~~ii 88 (176)
T d1fzqa_ 71 --------------------------------------------------------------RKIRPYWRSYFENTDILI 88 (176)
T ss_dssp --------------------------------------------------------------GGGHHHHHHHHTTCSEEE
T ss_pred --------------------------------------------------------------ccchhHHHHHhhccceeE
Confidence 777777778899999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+|.++. .|+.++.... .++|+++||||+|+..+.... .+.......+++.. .+.++++
T Consensus 89 ~v~d~~d~~s~~~~~-~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~ 157 (176)
T d1fzqa_ 89 YVIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTAAPAS---------EIAEGLNLHTIRDR-VWQIQSC 157 (176)
T ss_dssp EEEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHH---------HHHHHTTGGGCCSS-CEEEEEC
T ss_pred Eeeccccccchhhhh-hhhhhhhhhhccCCCeEEEEEEeccccccccHH---------HHHHHHHHHHHHhc-CCEEEEE
Confidence 999999999999998 5655554433 579999999999997642110 00000011122222 3689999
Q ss_pred eeccCCCHHHHHHHHHHHh
Q psy9997 297 SALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i 315 (330)
||++|+|++++|+++++.+
T Consensus 158 SA~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 158 SALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp CTTTCTTHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHhcC
Confidence 9999999999999998754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.93 E-value=5.9e-27 Score=193.13 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=115.7
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.+.+||+++|++|||||||++||..+.+... .+|.+.. ........+.+.+||++|+
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~---~~~~~~~~~~~~i~D~~g~------------------ 66 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN---VETVTYKNVKFNVWDVGGQ------------------ 66 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE---EEEEEETTEEEEEEEESCC------------------
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee---EEEeeccceeeEEecCCCc------------------
Confidence 45679999999999999999999998775332 2222221 2223334456666666666
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..++++++++++
T Consensus 67 -------------------------------------------------------------~~~~~~~~~~~~~~~~ii~ 85 (173)
T d1e0sa_ 67 -------------------------------------------------------------DKIRPLWRHYYTGTQGLIF 85 (173)
T ss_dssp -------------------------------------------------------------GGGHHHHGGGTTTCCEEEE
T ss_pred -------------------------------------------------------------chhhhHHHhhhcccceEEE
Confidence 6666777778999999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
|||+++++++.++. .|+....+. ..+.|+++|+||+|+..+... .++..+.+.+.++..+ +.++|+|
T Consensus 86 v~D~s~~~~~~~~~-~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~---------~~i~~~~~~~~~~~~~-~~~~e~S 154 (173)
T d1e0sa_ 86 VVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDAMKP---------HEIQEKLGLTRIRDRN-WYVQPSC 154 (173)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---------HHHHHHTTGGGCCSSC-EEEEECB
T ss_pred EEecccchhHHHHH-HHHHHHhhhcccccceeeeeeecccccccccH---------HHHHHHHHHHHHHhCC-CEEEEee
Confidence 99999999999998 565554433 368999999999999754211 1122222222233333 6799999
Q ss_pred eccCCCHHHHHHHHHHHh
Q psy9997 298 ALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i 315 (330)
|++|+||+++|++|...+
T Consensus 155 A~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 155 ATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp TTTTBTHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHhc
Confidence 999999999999998764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.92 E-value=2.4e-27 Score=197.09 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=113.6
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+||+++|++|||||||+++|..+.+.. ..||.+... ...+...+.+.+||++|+
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~i~D~~g~------------------ 71 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV---ETLSYKNLKLNVWDLGGQ------------------ 71 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE---EEEEETTEEEEEEEEC--------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE---EEEeeCCEEEEEEecccc------------------
Confidence 3567999999999999999999998876533 234433222 222233455666666666
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.++++++
T Consensus 72 -------------------------------------------------------------~~~~~~~~~~~~~~~~ii~ 90 (182)
T d1moza_ 72 -------------------------------------------------------------TSIRPYWRCYYADTAAVIF 90 (182)
T ss_dssp ---------------------------------------------------------------CCTTGGGTTTTEEEEEE
T ss_pred -------------------------------------------------------------cccchhHHhhhccceeEEE
Confidence 7777778888999999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-----HHHHhCCee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-----LAKELKAVK 292 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~ 292 (330)
|||++++.++.+.. .|+..+.+. ..+.|+++||||+|+... .+.+++.. .+...+ +.
T Consensus 91 v~d~~d~~s~~~~~-~~l~~~~~~~~~~~~piliv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~ 154 (182)
T d1moza_ 91 VVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGA--------------LSASEVSKELNLVELKDRS-WS 154 (182)
T ss_dssp EEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTC--------------CCHHHHHHHTTTTTCCSSC-EE
T ss_pred EeeecccccchhHH-HHHHHHHHhhccCCcceEEEEEeeccccc--------------cCHHHHHHHHHHHHHhhCC-CE
Confidence 99999999999988 566554433 257999999999999653 22222222 222333 68
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
|+||||++|+||+++|+++++.+.+
T Consensus 155 ~~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 155 IVASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp EEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.91 E-value=6.7e-26 Score=183.36 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=118.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||++||.++++...+..+. ......+...+.+.+||++|+
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~g~---------------------- 54 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQ---------------------- 54 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS----CCEEEEECSSCEEEEEECCCC----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccee----eEEEEEeeeeEEEEEecCCCc----------------------
Confidence 699999999999999999999988765543332 223344556667777777776
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+...+..+++.+++++++||+
T Consensus 55 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~~~d~ 77 (160)
T d1r8sa_ 55 ---------------------------------------------------------DKIRPLWRHYFQNTQGLIFVVDS 77 (160)
T ss_dssp ---------------------------------------------------------GGGHHHHHHHTTTCSEEEEEEET
T ss_pred ---------------------------------------------------------ccchhhhhhhhccceeEEEEEEe
Confidence 66666677778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++.++..+. .|+.++.... ..+|+++|+||.|+..... .+++..+....+++..+ ++|+++||++|
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~---------~~~i~~~~~~~~~~~~~-~~~~~~SAktg 146 (160)
T d1r8sa_ 78 NDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAMN---------AAEITDKLGLHSLRHRN-WYIQATCATSG 146 (160)
T ss_dssp TCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------HHHHHHHTTGGGCSSCC-EEEEECBTTTT
T ss_pred cChHHHHHHH-HHHHHHHHhhcccCceEEEEeeccccccccc---------HHHHHHHHHHHHHhhCC-CEEEEeECCCC
Confidence 9999999998 5665554432 5789999999999976421 12233333334444444 78999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
+||+++|++|++++
T Consensus 147 ~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 147 DGLYEGLDWLSNQL 160 (160)
T ss_dssp BTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhcC
Confidence 99999999998864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=5e-25 Score=184.13 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=70.9
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhh----------hcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK----------EKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~----------~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
+.+...++.+++.++++++|||+++..+|..+. ..|...+... ....|+++++||+|+.........+.
T Consensus 53 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~ 132 (195)
T d1svsa1 53 RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLT 132 (195)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGG
T ss_pred cccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHH
Confidence 555566666666677777777777666665443 1233333333 36789999999999854322111111
Q ss_pred ---hCCCCCcCHHHHHHHHH-Hh---------CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 270 ---KNKQKPISFEQGEKLAK-EL---------KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 270 ---~~~~~~v~~~~~~~~~~-~~---------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+........+++..+.. .+ +.+.+++|||++|.||+++|+.+.+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~ 193 (195)
T d1svsa1 133 ICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193 (195)
T ss_dssp GTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence 11222333344333222 11 23568899999999999999999888765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=2.7e-23 Score=174.16 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=120.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||++||++|||||||+.||..+.| ++.||+|..+.
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~---------------------------------------- 38 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY---------------------------------------- 38 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE----------------------------------------
Confidence 579999999999999999999999887 46788863321
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+....+.+++||++|++.++.++..||+++++++++|+....
T Consensus 39 -----------------------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------- 81 (200)
T d2bcjq2 39 -----------------------PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEY-------------- 81 (200)
T ss_dssp -----------------------EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGG--------------
T ss_pred -----------------------EEeccceeeeeccccccccccccccccccccceeeEeeeccch--------------
Confidence 1112345677889999977777777777776666666651100
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
..+++++.+....++... .|...+.
T Consensus 82 ------------------------------------------------------~~~~~~~~~~~~~~e~~~-~~~~~l~ 106 (200)
T d2bcjq2 82 ------------------------------------------------------DQVLVESDNENRMEESKA-LFRTIIT 106 (200)
T ss_dssp ------------------------------------------------------GCBCSSCTTSBHHHHHHH-HHHHHHH
T ss_pred ------------------------------------------------------hhhhhhhccccchHHHHH-HHHHHHh
Confidence 011122333445666666 7888776
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhH----HhhhCCCCCcCHHHHHHHHHHh---------CCeeEEEEeeccCCCHHHH
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLE----KLAKNKQKPISFEQGEKLAKEL---------KAVKYVECSALTQKGLKNV 307 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~ 307 (330)
... .+.|+++|+||+|+........ ........+.+.+.+..+.... ..+.++++||++|.||+++
T Consensus 107 ~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~v 186 (200)
T d2bcjq2 107 YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 186 (200)
T ss_dssp CGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHH
T ss_pred hhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHH
Confidence 654 7899999999999864321111 1111222344555555554321 1255889999999999999
Q ss_pred HHHHHHHhcC
Q psy9997 308 FDEAILAALE 317 (330)
Q Consensus 308 f~~l~~~i~~ 317 (330)
|+.+.+.|++
T Consensus 187 F~~i~~~I~~ 196 (200)
T d2bcjq2 187 FAAVKDTILQ 196 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.86 E-value=2.1e-22 Score=163.68 Aligned_cols=164 Identities=14% Similarity=0.196 Sum_probs=117.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+.+||+++|++|||||||+++|.+++|...+ +|.+. .........+.+.+||.+|.
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~-------------------- 59 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF---NVETVTYKNLKFQVWDLGGL-------------------- 59 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE---EEEEEEETTEEEEEEEECCC--------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce---eeeeeccCceEEEEeecccc--------------------
Confidence 3689999999999999999999999876432 33322 22233333456666776666
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+.......+..++++++++
T Consensus 60 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T d1upta_ 60 -----------------------------------------------------------TSIRPYWRCYYSNTDAVIYVV 80 (169)
T ss_dssp -----------------------------------------------------------GGGGGGGGGGCTTCSEEEEEE
T ss_pred -----------------------------------------------------------ccccccchhhhhhhhhhhhhh
Confidence 555566666778899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++..++......+...+... ....|+++|+||.|+...... .++..+.+..++...+ ++|+++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~---------~~i~~~~~~~~~~~~~-~~~~~~SA~~ 150 (169)
T d1upta_ 81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS---------SEMANSLGLPALKDRK-WQIFKTSATK 150 (169)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---------HHHHHHHTGGGCTTSC-EEEEECCTTT
T ss_pred hhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH---------HHHHHHHHHHHHhcCC-CEEEEEeCCC
Confidence 9999999988874444444433 368999999999999764211 1122223333444444 7899999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.||+++|+.|++.+.++
T Consensus 151 g~gv~e~~~~l~~~l~~k 168 (169)
T d1upta_ 151 GTGLDEAMEWLVETLKSR 168 (169)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999987553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.85 E-value=9.3e-23 Score=167.75 Aligned_cols=156 Identities=20% Similarity=0.258 Sum_probs=106.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+++||+++|++|||||||++|+.++++.... ++.+. ...........+.+||+++.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~d~~~~------------------- 69 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGS---NVEEIVINNTRFLMWDIGGQ------------------- 69 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCS---SCEEEEETTEEEEEEECCC--------------------
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccce---eEEEEeecceEEEEeccccc-------------------
Confidence 45699999999999999999999998764221 11111 11112223344555555554
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.....+..++..+++++++
T Consensus 70 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 89 (177)
T d1zj6a1 70 ------------------------------------------------------------ESLRSSWNTYYTNTEFVIVV 89 (177)
T ss_dssp ---------------------------------------------------------------CGGGHHHHTTCCEEEEE
T ss_pred ------------------------------------------------------------cccccchhhhhccceeeeee
Confidence 66666777778889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
+|.++..+++... .+....... ..+.|+++|+||+|+.... ..++..... +.. .++|
T Consensus 90 ~d~~d~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~-~~~~ 153 (177)
T d1zj6a1 90 VDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKECM--------------TVAEISQFLKLTSIKDH-QWHI 153 (177)
T ss_dssp EETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHHTGGGCCSS-CEEE
T ss_pred cccccccchhhhh-hhhhhhhhcccccceEEEEEEEcccccccC--------------cHHHHHHHHHHHhhHhc-CCEE
Confidence 9999999998876 343333322 3689999999999996541 222222221 222 3689
Q ss_pred EEEeeccCCCHHHHHHHHHHHh
Q psy9997 294 VECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+++||++|+|++++|++|++++
T Consensus 154 ~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 154 QACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp EECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999876
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=3.4e-23 Score=173.78 Aligned_cols=181 Identities=13% Similarity=0.151 Sum_probs=108.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+.+||+++|++|||||||++|| +|...+.||+|... ..++.....+++||++|++.++..+..+|+++++++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~---~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~ 74 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL 74 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEE---EEEEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEE---EEEeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence 3589999999999999999999 46777899998543 33455678889999999977777777777766666666
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
|+.. +...+.+
T Consensus 75 ~~~~---------------------------------------------------------------------~~~~~~~ 85 (200)
T d1zcba2 75 VSSS---------------------------------------------------------------------EFDQVLM 85 (200)
T ss_dssp EETT---------------------------------------------------------------------CTTCEET
T ss_pred EEcC---------------------------------------------------------------------Ccceeee
Confidence 6511 0001111
Q ss_pred EcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhh---CC-CCCcCHHHHHHHHHHh--------
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAK---NK-QKPISFEQGEKLAKEL-------- 288 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~~-------- 288 (330)
+......++.....|...+... ..++|++|||||+|+..+......... +. -..-..+.+.++....
T Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 165 (200)
T d1zcba2 86 EDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQ 165 (200)
T ss_dssp TEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSC
T ss_pred ecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCC
Confidence 1111233333331222233332 368999999999998653221111111 11 1123445555544432
Q ss_pred --CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 289 --KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 289 --~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
..+.++++||+++.||+++|+.+.+.|++
T Consensus 166 ~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 166 QQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp C--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 12457789999999999999998877764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=6.1e-22 Score=163.42 Aligned_cols=164 Identities=19% Similarity=0.138 Sum_probs=112.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-+|+++|.+|||||||+++|++.+.. .....+............ ...+.+|||+|........
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~------------- 70 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDAL------------- 70 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHH-------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeeccccccccccccc-------------
Confidence 36999999999999999999987642 223333322222233333 3567889999983211110
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.+.+.......+++||++++|+
T Consensus 71 ----------------------------------------------------------~~~~~~~~~~~~~~ad~il~v~ 92 (178)
T d1wf3a1 71 ----------------------------------------------------------GEFMDQEVYEALADVNAVVWVV 92 (178)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTSSCSEEEEEE
T ss_pred ----------------------------------------------------------chhcccccccccccccceeeee
Confidence 0222222233567899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++++.+..+. .|...+++...+.|+++|+||+|+... ..+....+.+.++...++++||++|
T Consensus 93 D~~~~~~~~~~--~i~~~l~~~~~~~piilv~NK~Dl~~~---------------~~~~~~~~~~~~~~~~~~~iSA~~~ 155 (178)
T d1wf3a1 93 DLRHPPTPEDE--LVARALKPLVGKVPILLVGNKLDAAKY---------------PEEAMKAYHELLPEAEPRMLSALDE 155 (178)
T ss_dssp ETTSCCCHHHH--HHHHHHGGGTTTSCEEEEEECGGGCSS---------------HHHHHHHHHHTSTTSEEEECCTTCH
T ss_pred chhhhhccccc--chhhheeccccchhhhhhhcccccccC---------------HHHHHHHHHhhcccCceEEEecCCC
Confidence 99887655442 466777776678999999999999653 1234455666666567999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++++.+++.+-+
T Consensus 156 ~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 156 RQVAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHHHTTCCB
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999887643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.9e-21 Score=157.46 Aligned_cols=158 Identities=19% Similarity=0.218 Sum_probs=111.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||++++++.+.. ..+..+........+...+ ..+.+||++|........
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~------------- 66 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEV------------- 66 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHH-------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccc-------------
Confidence 79999999999999999999987653 2222222233333444444 467789999972211000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
..........++..+|++++++
T Consensus 67 ----------------------------------------------------------~~~~~~~~~~~~~~~d~~i~~~ 88 (161)
T d2gj8a1 67 ----------------------------------------------------------ERIGIERAWQEIEQADRVLFMV 88 (161)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHTCSEEEEEE
T ss_pred ----------------------------------------------------------hhHHHHHHHHHHHhccccceee
Confidence 0111122334577899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|.++..+++... .|...+.....+.|+++|+||+|+..+.... .+.+..+++++||++|
T Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~--------------------~~~~~~~~~~iSAk~~ 147 (161)
T d2gj8a1 89 DGTTTDAVDPAE-IWPEFIARLPAKLPITVVRNKADITGETLGM--------------------SEVNGHALIRLSARTG 147 (161)
T ss_dssp ETTTCCCCSHHH-HCHHHHHHSCTTCCEEEEEECHHHHCCCCEE--------------------EEETTEEEEECCTTTC
T ss_pred ccccccchhhhh-hhhhhhhhcccccceeeccchhhhhhhHHHH--------------------HHhCCCcEEEEECCCC
Confidence 999999988887 7777777777789999999999986542110 1123478999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++++++.+.+
T Consensus 148 ~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 148 EGVDVLRNHLKQSM 161 (161)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=4.8e-20 Score=148.64 Aligned_cols=162 Identities=17% Similarity=0.284 Sum_probs=108.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||++++.++++. .+.||.+... ...........+||+.|.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~---~~~~~~~~~~~~~~~~~~----------------------- 54 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS---EELAIGNIKFTTFDLGGH----------------------- 54 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE---EEECCTTCCEEEEECCCS-----------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE---EEeccCCeeEEEEeeccc-----------------------
Confidence 8999999999999999999998864 3455554322 223333445556666655
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
..+...+..++..+++++++||.+
T Consensus 55 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~ 78 (166)
T d2qtvb1 55 --------------------------------------------------------IQARRLWKDYFPEVNGIVFLVDAA 78 (166)
T ss_dssp --------------------------------------------------------GGGGGGGGGGCTTCSEEEEEEETT
T ss_pred --------------------------------------------------------hhhhhhHhhhhhheeeeeeecccc
Confidence 556666777788899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++.++.... .|+....... .+.|+++++||.|+..........+..... ...+...+... ..+.|+++||++|+
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~SA~tg~ 154 (166)
T d2qtvb1 79 DPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLL--NTTGSQRIEGQ-RPVEVFMCSVVMRN 154 (166)
T ss_dssp CGGGHHHHH-HHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCS--SCCC---CCSS-CCEEEEEEBTTTTB
T ss_pred chhhhhhhh-HHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhh--hhhHHHhhccc-CCCEEEEeeCCCCC
Confidence 999999988 5655554443 589999999999997542111100000000 00000011112 23679999999999
Q ss_pred CHHHHHHHHHH
Q psy9997 303 GLKNVFDEAIL 313 (330)
Q Consensus 303 ~v~~~f~~l~~ 313 (330)
||+++|++|.+
T Consensus 155 Gv~e~~~~l~~ 165 (166)
T d2qtvb1 155 GYLEAFQWLSQ 165 (166)
T ss_dssp SHHHHHHHHTT
T ss_pred CHHHHHHHHhC
Confidence 99999998853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=6e-20 Score=151.50 Aligned_cols=167 Identities=19% Similarity=0.137 Sum_probs=104.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
.|+++|.+|||||||+++|++........+..................+.+|||+|........
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~---------------- 66 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG---------------- 66 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS----------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHH----------------
Confidence 4899999999999999999987643222222222222233344455668899999972110000
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.........+..++++++++|..
T Consensus 67 --------------------------------------------------------~~~~~~~l~~~~~~~~~~~~~d~~ 90 (180)
T d1udxa2 67 --------------------------------------------------------KGLGLEFLRHIARTRVLLYVLDAA 90 (180)
T ss_dssp --------------------------------------------------------CCSCHHHHHHHTSSSEEEEEEETT
T ss_pred --------------------------------------------------------HHHHHHHHHHHHhhhhhhhhcccc
Confidence 111111112356789999999986
Q ss_pred Ch--hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 225 SP--SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 225 ~~--~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.. .+.+... .|+........+.|+++|+||+|+.... ..++..+.....+ .+++++||++|.
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~iSA~tg~ 154 (180)
T d1udxa2 91 DEPLKTLETLR-KEVGAYDPALLRRPSLVALNKVDLLEEE--------------AVKALADALAREG-LAVLPVSALTGA 154 (180)
T ss_dssp SCHHHHHHHHH-HHHHHHCHHHHHSCEEEEEECCTTSCHH--------------HHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred cccccchhhhh-hhhhccccccchhhhhhhhhhhhhhhHH--------------HHHHHHHHHHhcC-CeEEEEEcCCCC
Confidence 43 3333333 3444333333468999999999997531 1233344444444 689999999999
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy9997 303 GLKNVFDEAILAALEPP 319 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~ 319 (330)
|++++++.+...+-..+
T Consensus 155 gid~L~~~i~~~l~~~~ 171 (180)
T d1udxa2 155 GLPALKEALHALVRSTP 171 (180)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHhhcC
Confidence 99999999888775543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.78 E-value=3e-19 Score=146.96 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=105.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+..||+++|++|||||||+++|.++.+...+ |+.+.... .+..++ .....||+.++
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~~~~~~~------------------ 67 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSE-ELTIAG--MTFTTFDLGGH------------------ 67 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE-EEEETT--EEEEEEEECC-------------------
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccccee-EEEecc--cccccccccch------------------
Confidence 456789999999999999999999998875433 33333222 223332 33455666555
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
..+...+..+++.++++++
T Consensus 68 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1f6ba_ 68 -------------------------------------------------------------IQARRVWKNYLPAINGIVF 86 (186)
T ss_dssp ----------------------------------------------------------------CCGGGGGGGGCSEEEE
T ss_pred -------------------------------------------------------------hhhhhHHhhhhcccceeee
Confidence 5555666777888999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhH---HhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLE---KLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|++++..+......+....... ..+.|+++++||.|+........ ..................+... .+.+++
T Consensus 87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 165 (186)
T d1f6ba_ 87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNAR-PLEVFM 165 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC-CEEEEE
T ss_pred eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcC-CCEEEE
Confidence 999999999998873333333322 36899999999999975422110 0000000000000000011112 267999
Q ss_pred EeeccCCCHHHHHHHHHHHh
Q psy9997 296 CSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i 315 (330)
+||++|+|++|+|++|++.+
T Consensus 166 ~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 166 CSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CBTTTTBSHHHHHHHHHTTC
T ss_pred EeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999998654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=1.1e-18 Score=148.79 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=44.7
Q ss_pred CCCcEEEEEeccCCCCCchhh-----HHhhhCCC-------------CCcCHHHHHHHHHH-----h-------CCeeEE
Q psy9997 245 QKTPFLLVGTQIDLREDAPTL-----EKLAKNKQ-------------KPISFEQGEKLAKE-----L-------KAVKYV 294 (330)
Q Consensus 245 ~~~piilV~nK~Dl~~~~~~~-----~~~~~~~~-------------~~v~~~~~~~~~~~-----~-------~~~~~~ 294 (330)
.++|++|+|||+|+..+.... ...-++.. .....+++..+.+. . ..+..+
T Consensus 113 ~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h 192 (221)
T d1azta2 113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 192 (221)
T ss_dssp SSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEE
T ss_pred CCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeee
Confidence 689999999999997643211 11101110 11123444444321 1 124467
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++||+++.|++.+|..+...|++
T Consensus 193 ~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 193 FTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp ECCTTCHHHHHHHHHTTHHHHHH
T ss_pred ecceeccHHHHHHHHHHHHHHHH
Confidence 89999999999999988777764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=6.5e-19 Score=142.10 Aligned_cols=157 Identities=23% Similarity=0.285 Sum_probs=99.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|.+|||||||++++++.+.. .....+........+... ...+.+|||+|......
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~--------------- 63 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETN--------------- 63 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCC---------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC--CeeEEeccccccccCCc---------------
Confidence 69999999999999999999986632 222222222223344444 45678899999621000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
...+..+.+++ ...+..+|++++++
T Consensus 64 ---------------------------------------------------~~~~~~~~~~~----~~~~~~ad~ii~v~ 88 (160)
T d1xzpa2 64 ---------------------------------------------------DLVERLGIERT----LQEIEKADIVLFVL 88 (160)
T ss_dssp ---------------------------------------------------TTCCCCCHHHH----HHHHHHCSEEEEEE
T ss_pred ---------------------------------------------------cHHHHHHHHHH----HHHHHhCCEEEEEE
Confidence 00000000111 11356799999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|.+++.+.+... + .......|+++++||+|+... ...++...... ...+++++||++|
T Consensus 89 d~~~~~~~~~~~--~----~~~~~~~~~i~~~~k~d~~~~--------------~~~~~~~~~~~--~~~~~~~vSA~~g 146 (160)
T d1xzpa2 89 DASSPLDEEDRK--I----LERIKNKRYLVVINKVDVVEK--------------INEEEIKNKLG--TDRHMVKISALKG 146 (160)
T ss_dssp ETTSCCCHHHHH--H----HHHHTTSSEEEEEEECSSCCC--------------CCHHHHHHHHT--CSTTEEEEEGGGT
T ss_pred eCCCCcchhhhh--h----hhhcccccceeeeeeccccch--------------hhhHHHHHHhC--CCCcEEEEECCCC
Confidence 999887766554 2 222356899999999999764 22233222111 2257999999999
Q ss_pred CCHHHHHHHHHHH
Q psy9997 302 KGLKNVFDEAILA 314 (330)
Q Consensus 302 ~~v~~~f~~l~~~ 314 (330)
.|++++++.+.+.
T Consensus 147 ~gi~~L~~~I~ke 159 (160)
T d1xzpa2 147 EGLEKLEESIYRE 159 (160)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998763
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=2.6e-18 Score=142.03 Aligned_cols=169 Identities=20% Similarity=0.177 Sum_probs=104.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||++++++... ...+..+........+..++. .+.++|++|......
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~------------- 71 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSR------------- 71 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCcccccc-------------
Confidence 358999999999999999999998763 234444443433444555554 467889998732221
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
.|+..+...........++.+|++++
T Consensus 72 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~dvii~ 97 (186)
T d1mkya2 72 ------------------------------------------------------VEPRTVEKYSNYRVVDSIEKADVVVI 97 (186)
T ss_dssp ------------------------------------------------------------CCSCCHHHHHHHHHCSEEEE
T ss_pred ------------------------------------------------------ccccccccchhHHHHHHHhcCCEEEE
Confidence 12222223333333334578999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH----hCCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE----LKAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~e 295 (330)
++|++....-+.. .++..+.. .+.|+|+|+||+|+... .....++..+..++ .+..++++
T Consensus 98 v~d~~~~~~~~~~--~~~~~~~~--~~~~~i~v~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~ 161 (186)
T d1mkya2 98 VLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVH------------REKRYDEFTKLFREKLYFIDYSPLIF 161 (186)
T ss_dssp EEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTT------------GGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred eecccccchhhHH--HHHHHHHH--cCCceeeeccchhhhcc------------hhhhhhhHHHHHHHHhcccCCCeEEE
Confidence 9999865443332 34444444 47899999999999765 22223333333332 23357999
Q ss_pred EeeccCCCHHHHHHHHHHHh
Q psy9997 296 CSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i 315 (330)
+||++|.|++++++.+-.++
T Consensus 162 vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 162 TSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999986554
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=7.3e-19 Score=143.62 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=100.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.|+++|++|||||||+++|++.... .....+..... ...++.....+..||++|......-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~--------------- 64 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV--QDTVEWYGKTFKLVDTCGVFDNPQD--------------- 64 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCS--EEEEEETTEEEEEEECTTTTSSGGG---------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccc--cccccccccccccccccceeeeecc---------------
Confidence 5899999999999999999986643 22222222222 2334455667888999986211100
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
.....+......++..+|+++++.|
T Consensus 65 -------------------------------------------------------~~~~~~~~~~~~~~~~ad~i~~~~~ 89 (171)
T d1mkya1 65 -------------------------------------------------------IISQKMKEVTLNMIREADLVLFVVD 89 (171)
T ss_dssp -------------------------------------------------------CCCHHHHHHHHHHHTTCSEEEEEEE
T ss_pred -------------------------------------------------------ccccccccccccccccCcEEEEeec
Confidence 0001122222334678999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.+........ .++..+... ++|+++|+||+|+..+ ...+....+.+ .+...++++||++|.
T Consensus 90 ~~~~~~~~~~--~~~~~l~~~--~~pviiv~NK~Dl~~~--------------~~~~~~~~~~~-~~~~~~i~iSAk~g~ 150 (171)
T d1mkya1 90 GKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE--------------FEREVKPELYS-LGFGEPIPVSAEHNI 150 (171)
T ss_dssp TTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH--------------HHHHTHHHHGG-GSSCSCEECBTTTTB
T ss_pred cccccccccc--ccccccccc--cccccccchhhhhhhh--------------hhhHHHHHHHh-cCCCCeEEEecCCCC
Confidence 8766555443 355555543 6899999999999642 11122222222 233568999999999
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy9997 303 GLKNVFDEAILAALEPP 319 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~ 319 (330)
|++++++++++.+-+..
T Consensus 151 gid~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 151 NLDTMLETIIKKLEEKG 167 (171)
T ss_dssp SHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 99999999999876544
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.7e-18 Score=138.76 Aligned_cols=122 Identities=48% Similarity=0.846 Sum_probs=95.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
..+||+++|++|||||||+.||+.+.|.+++.||+++.+.+.+.+++..+.+++||+++
T Consensus 8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g--------------------- 66 (185)
T d2atxa1 8 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG--------------------- 66 (185)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCC---------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccc---------------------
Confidence 36899999999999999999999999999999999988888889999999999998876
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++.+ +.++..||+++|++++|||... ..++. .....|
T Consensus 67 ---~e~~------------------------------------~~~~~~~~~~a~~~ilv~d~t~--~~Sf~--~~~~~~ 103 (185)
T d2atxa1 67 ---QEDY------------------------------------DRLRPLSYPMTDVFLICFSVVN--PASFQ--NVKEEW 103 (185)
T ss_dssp ---SSSS------------------------------------TTTGGGGCTTCSEEEEEEETTC--HHHHH--HHHHTH
T ss_pred ---cchh------------------------------------hhhhhhcccccceeeeccccch--HHHHH--HHHHHH
Confidence 2222 5567889999999999998332 22221 122233
Q ss_pred ceeeeccCCCcccccccceeeccCCCc
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~ 188 (330)
.. ......+..++.++|+|.|+....
T Consensus 104 ~~-~~~~~~~~~~~ilvgnK~Dl~~~~ 129 (185)
T d2atxa1 104 VP-ELKEYAPNVPFLLIGTQIDLRDDP 129 (185)
T ss_dssp HH-HHHHHSTTCCEEEEEECTTSTTCH
T ss_pred HH-HHHhcCCCCCeeEeeeccccccch
Confidence 33 333446678899999999996543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.9e-17 Score=135.83 Aligned_cols=119 Identities=38% Similarity=0.658 Sum_probs=94.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
..||+++|++|||||||+.||..+.|++.+.||+++.+.....+++..+.+++||+++.
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~--------------------- 60 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL--------------------- 60 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS---------------------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCcc---------------------
Confidence 57999999999999999999999999999999999988889999999999999998861
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.+ ..+++.||+++|++++|||... ..++. .+..|.
T Consensus 61 ---~~~------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~~Sf~---~~~~~~ 96 (177)
T d1kmqa_ 61 ---EDY------------------------------------DRLRPLSYPDTDVILMCFSIDS--PDSLE---NIPEKW 96 (177)
T ss_dssp ---GGG------------------------------------TTTGGGGCTTCSEEEEEEETTC--HHHHH---HHHHTH
T ss_pred ---chh------------------------------------cccchhhcccchhhhhhcccch--hHHHH---HHHHHH
Confidence 111 4567889999999999998432 22222 233333
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
........+..|+.++|||.|+..
T Consensus 97 ~~~~~~~~~~~piilvgnK~Dl~~ 120 (177)
T d1kmqa_ 97 TPEVKHFCPNVPIILVGNKKDLRN 120 (177)
T ss_dssp HHHHHHHSTTSCEEEEEECGGGTT
T ss_pred HHHHHHhCCCCceEEeeecccccc
Confidence 333334557789999999999864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=2.9e-17 Score=138.16 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=83.5
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
+|+++|++|||||||+++|.++++...+ ||.+..+......++..+.+.+||++|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~----------------------- 57 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGH----------------------- 57 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCC-----------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeecccc-----------------------
Confidence 5899999999999999999999886654 5665555443333556667777887777
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEEEEEEc
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+. ..+..++..++++++|+|+
T Consensus 58 --------------------------------------------------------~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 58 --------------------------------------------------------ESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHGGGEEEEEEEEET
T ss_pred --------------------------------------------------------ccccchhhhhhhhhccccceEEEc
Confidence 4432 3445567889999999999
Q ss_pred CChhhH-hhhhhcchhhhh-h---cCCCCcEEEEEeccCCCCC
Q psy9997 224 VSPSSF-ENVKEKWVPEIT-H---HCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 224 ~~~~s~-~~~~~~~~~~i~-~---~~~~~piilV~nK~Dl~~~ 261 (330)
++..++ .... .|+..+. . ...++|+++|+||+|+..+
T Consensus 82 ~d~~~~~~~~~-~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 82 AAFQREVKDVA-EFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp TTHHHHHHHHH-HHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred ccccccHHHHH-HHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence 998765 3443 3443332 2 2357899999999999764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.3e-17 Score=135.72 Aligned_cols=118 Identities=33% Similarity=0.524 Sum_probs=92.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||++||++|||||||+.||+.+.|+++|.||+++.+.+...+++..+.+++|++++..
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-------------------- 61 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP-------------------- 61 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG--------------------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccc--------------------
Confidence 579999999999999999999999999999999999888888999999999999877611
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+ ..+++.+|+++|++++|||-.. ..+ ...+..|.
T Consensus 62 ----~~------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~~S---f~~~~~~~ 96 (179)
T d1m7ba_ 62 ----YY------------------------------------DNVRPLSYPDSDAVLICFDISR--PET---LDSVLKKW 96 (179)
T ss_dssp ----GG------------------------------------TTTGGGGCTTCSEEEEEEETTC--HHH---HHHHHHTH
T ss_pred ----cc------------------------------------cccccchhhhhhhhheeeeccc--CCC---HHHHHHHH
Confidence 11 3456778999999999998321 222 22333343
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
........+..|+.++|||.|+.
T Consensus 97 ~~~~~~~~~~~~iilVgnK~Dl~ 119 (179)
T d1m7ba_ 97 KGEIQEFCPNTKMLLVGCKSDLR 119 (179)
T ss_dssp HHHHHHHCTTCEEEEEEECGGGG
T ss_pred HHHHhccCCcceEEEEEeccccc
Confidence 33334455688999999999984
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.67 E-value=5.6e-18 Score=139.51 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=75.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
..++|++|+..+...+...+..+|++++++|.++....+... .| ..+.. .++|+++|.||+|+.......
T Consensus 61 ~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~-~~-~~~~~--~~~p~iiv~NKiD~~~~~~~~------ 130 (179)
T d1wb1a4 61 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGE-HM-LILDH--FNIPIIVVITKSDNAGTEEIK------ 130 (179)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHH-HH-HHHHH--TTCCBCEEEECTTSSCHHHHH------
T ss_pred ccccccccccccccchhhhhhhccccccccccccccchhhhh-hh-hhhhh--cCCcceeccccccccCHHHHH------
Confidence 345677777888777777888999999999998764443332 22 22322 378999999999997642100
Q ss_pred CCCCcCHHHHHHHHHHh---CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 272 KQKPISFEQGEKLAKEL---KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
...+....+.+.. ...+++++||++|.|++++++.++..+-+
T Consensus 131 ----~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 131 ----RTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp ----HHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence 0112222222221 22579999999999999999999877643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.3e-17 Score=132.93 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=89.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.||+.+.|...+.||++..+ .+.+.+++..+.+.+|++++....
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------------- 65 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF----------------- 65 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHH-----------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccccccccccccccccccccc-----------------
Confidence 58999999999999999999999999999999998554 778888999999999988872221
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+++.|+++++++++|||... ......+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~-----~~Sf~~~~~~ 97 (170)
T d1i2ma_ 66 -------------------------------------------GGLRDGYYIQAQCAIIMFDVTS-----RVTYKNVPNW 97 (170)
T ss_dssp -------------------------------------------SSCGGGGTTTCCEEEEEEETTS-----GGGGTTHHHH
T ss_pred -------------------------------------------ceecchhcccccchhhcccccc-----ccccchhHHH
Confidence 3456789999999999998433 2223456667
Q ss_pred ceeeeccCCCcccccccceeeccCCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
+..+... .+..|+.++|+|.|+...
T Consensus 98 ~~~~~~~-~~~~piilvgnK~Dl~~~ 122 (170)
T d1i2ma_ 98 HRDLVRV-CENIPIVLCGNKVDIKDR 122 (170)
T ss_dssp HHHHHHH-HCSCCEEEEEECCCCSCS
T ss_pred HHHHhhc-cCCCceeeecchhhhhhh
Confidence 6655433 357899999999998643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=2.5e-17 Score=136.04 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=59.3
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhh--cchhh---hhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKE--KWVPE---ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~--~~~~~---i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 285 (330)
+..++.++.+.+............ .+... ......++|+++|+||+|+.... +..+.+.
T Consensus 77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----------------~~~~~~~ 140 (185)
T d1lnza2 77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----------------ENLEAFK 140 (185)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------------HHHHHHH
T ss_pred HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----------------HHHHHHH
Confidence 345778887777664443332220 11111 11112478999999999997531 2233344
Q ss_pred HHhC-CeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 286 KELK-AVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 286 ~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+.++ ..+++.+||++|.|++++++++++.+-+.+.
T Consensus 141 ~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~ 176 (185)
T d1lnza2 141 EKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 176 (185)
T ss_dssp HHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred HHhccCCcEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 4332 3678999999999999999999998865443
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.3e-16 Score=128.52 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=93.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-+||+++|++|||||||+.||.++.|.+.+.++....+ .+.+.+++..+.+.+||+++.+
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e------------------- 65 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE------------------- 65 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCch-------------------
Confidence 38999999999999999999999999999999997554 7789999999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ + ..+++.||++++++++|||.... ........|
T Consensus 66 -----~----~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 99 (171)
T d2ew1a1 66 -----R----F--------------------------------RSITQSYYRSANALILTYDITCE-----ESFRCLPEW 99 (171)
T ss_dssp -----G----G--------------------------------HHHHGGGSTTCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -----h----h--------------------------------HHHHHHHHhccceEEEeeecccc-----hhhhhhhhh
Confidence 1 1 45677899999999999973321 122334445
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+........++.++|+|.|+..
T Consensus 100 ~~~i~~~~~~~~~~ilvgnK~D~~~ 124 (171)
T d2ew1a1 100 LREIEQYASNKVITVLVGNKIDLAE 124 (171)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhcccccccccEEEEEeeccccc
Confidence 5555555667788999999999853
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.4e-16 Score=129.88 Aligned_cols=121 Identities=20% Similarity=0.296 Sum_probs=94.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.|||++||++|||||||+.||+.+.|..++.||.++.+.+.+.+++..+.+++|++++...
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~------------------- 65 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE------------------- 65 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeeccccccccccccccccc-------------------
Confidence 6999999999999999999999999999999999999999999999999999998776111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+ ..+++.+++++|++++|||... ......+..|.
T Consensus 66 ---------~--------------------------------~~~~~~~~~~~~~~ilv~d~~~-----~~s~~~~~~~~ 99 (171)
T d2erya1 66 ---------F--------------------------------GAMREQYMRTGEGFLLVFSVTD-----RGSFEEIYKFQ 99 (171)
T ss_dssp ---------C--------------------------------CHHHHHHHHHCSEEEEEEETTC-----HHHHHTHHHHH
T ss_pred ---------c--------------------------------cccccccccccceEEEeecccc-----ccchhhHHHHh
Confidence 1 3345678899999999998332 22223455666
Q ss_pred eeeec-cCCCcccccccceeeccCCCc
Q psy9997 163 WFIST-EHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 163 ~~~~~-~~~~~~~~~~~g~~~~~~~~~ 188 (330)
..... ......|+.++|+|.|+...+
T Consensus 100 ~~~~~~~~~~~~p~ilvgnK~Dl~~~~ 126 (171)
T d2erya1 100 RQILRVKDRDEFPMILIGNKADLDHQR 126 (171)
T ss_dssp HHHHHHHTSSCCSEEEEEECTTCTTSC
T ss_pred HHHHhhcccCCCCEEEEEeccchhhhc
Confidence 65444 345667888999999985433
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.60 E-value=1.8e-16 Score=131.87 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=60.5
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL- 288 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 288 (330)
.+..+++++++.|.+++..-... .+++.+.. .+.|+++|+||+|+.... ...+....+.+.+
T Consensus 102 ~~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~--~~~piivv~NK~D~~~~~-------------~~~~~~~~~~~~l~ 164 (195)
T d1svia_ 102 TREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKG-------------KWDKHAKVVRQTLN 164 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGG-------------GHHHHHHHHHHHHT
T ss_pred cccchhhhhhhhhcccccccccc--cccccccc--ccCcceechhhccccCHH-------------HHHHHHHHHHHHhc
Confidence 34567899999998765433332 35555554 378999999999986531 1112223333322
Q ss_pred --CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 --KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 --~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
...+++.+||++|.|++++++++.+.+
T Consensus 165 ~~~~~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 165 IDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 335799999999999999999988776
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=2.9e-16 Score=129.16 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=57.7
Q ss_pred cccCCCEEEEEEEcCChhhHhhhh---------hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVK---------EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~---------~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
.++.+|++++++|.+.+....... ..++..+.. .+.|+++|+||+|+..... +.
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~---------------~~ 140 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQ---------------EV 140 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHH---------------HH
T ss_pred cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHH---------------HH
Confidence 456789999999987553332221 011222222 4799999999999875411 11
Q ss_pred HHHHHHHhCC------eeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 281 GEKLAKELKA------VKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 281 ~~~~~~~~~~------~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
...+.+.++. ..++++||++|.|++++++.+++.+-
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 141 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 2222222221 24889999999999999999987764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1.2e-15 Score=126.78 Aligned_cols=122 Identities=17% Similarity=0.351 Sum_probs=95.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-+||+++|++|||||||+.||..+.|...+.||++..+ ...+.+++..+.+.+||+++
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G--------------------- 64 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG--------------------- 64 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTT---------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCC---------------------
Confidence 48999999999999999999999999999999998776 56888999999999999887
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.++| +.+++.|+++|+++++|||.+.. .. ......|
T Consensus 65 ---~e~~------------------------------------~~~~~~~~~~a~~~i~v~d~t~~--~s---~~~~~~~ 100 (194)
T d2bcgy1 65 ---QERF------------------------------------RTITSSYYRGSHGIIIVYDVTDQ--ES---FNGVKMW 100 (194)
T ss_dssp ---TTTT------------------------------------TCCCGGGGTTCSEEEEEEETTCH--HH---HHHHHHH
T ss_pred ---chhh------------------------------------HHHHHHHhccCCEEEEEEeCcch--hh---hhhHhhh
Confidence 2222 45677899999999999985421 12 2233334
Q ss_pred ceeeeccCCCcccccccceeeccCCCcc
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWV 189 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 189 (330)
...+........++.++|+|.|+.....
T Consensus 101 ~~~~~~~~~~~~~iilv~nK~D~~~~~~ 128 (194)
T d2bcgy1 101 LQEIDRYATSTVLKLLVGNKCDLKDKRV 128 (194)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred hhhhhhcccCCceEEEEEeccccccccc
Confidence 4444455667889999999999865443
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=4.8e-16 Score=126.39 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=93.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-+||+++|++|||||||+.||..+.|.+.+.++.+ +.+...+...+..+.+++||+++..
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e------------------- 65 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE------------------- 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCch-------------------
Confidence 48999999999999999999999999999999997 5557788899999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++ ..+++.|++++|++|+|||.... .....+..|
T Consensus 66 -----~~------------------------------------~~~~~~~~~~ad~~ilv~d~~~~-----~s~~~~~~~ 99 (169)
T d3raba_ 66 -----RY------------------------------------RTITTAYYRGAMGFILMYDITNE-----ESFNAVQDW 99 (169)
T ss_dssp -----GG------------------------------------HHHHHTTTTTCCEEEEEEETTCH-----HHHHTHHHH
T ss_pred -----hh------------------------------------HHHHHHHHhcCCEEEEEEECccc-----hhhhhhhhh
Confidence 11 44567799999999999974331 222334455
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.........+..++.++|+|.|+..
T Consensus 100 ~~~~~~~~~~~~~iivv~nK~D~~~ 124 (169)
T d3raba_ 100 STQIKTYSWDNAQVLLVGNKCDMED 124 (169)
T ss_dssp HHHHHHHCCSCCEEEEEEECTTCGG
T ss_pred hhhhhcccCCcceEEEEEeeccccc
Confidence 5555555667888999999999853
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.4e-15 Score=124.38 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=64.1
Q ss_pred cCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 207 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 207 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
.......+++++++.|.+....... .+...+.+ ...|.++|.||.|+... +.......+.+..
T Consensus 79 ~~~~~~~~~~~l~~~d~~~~~~~~~---~~~~~l~~--~~~~~i~v~~k~d~~~~------------~~~~~~~~~~~~~ 141 (179)
T d1egaa1 79 ASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLRE--GKAPVILAVNKVDNVQE------------KADLLPHLQFLAS 141 (179)
T ss_dssp TTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHS--SSSCEEEEEESTTTCCC------------HHHHHHHHHHHHT
T ss_pred cccchhhcceeEEEEecCccchhHH---HHHHHhhh--ccCceeeeeeeeeccch------------hhhhhhHhhhhhh
Confidence 3334556778888888765332222 22333332 46789999999998765 2233455666777
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.++..+++++||++|.|++++++.+...+-
T Consensus 142 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 142 QMNFLDIVPISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp TSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred hcCCCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence 777678999999999999999999887663
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=1e-15 Score=124.81 Aligned_cols=120 Identities=19% Similarity=0.360 Sum_probs=74.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-+||+++|++|||||||+.||+.+.|.+++.+|++..+ .+.+.+++..+.+++||+++..
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e------------------- 66 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE------------------- 66 (173)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCch-------------------
Confidence 48999999999999999999999999999999998555 7789999999999999987621
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.| ..+++.++++++++++|||.... .....+..|
T Consensus 67 -----~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 100 (173)
T d2fu5c1 67 -----RF------------------------------------RTITTAYYRGAMGIMLVYDITNE-----KSFDNIRNW 100 (173)
T ss_dssp ----------------------------------------------CCTTTTTCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred -----hh------------------------------------HHHHHHhccCCCEEEEEEECCCh-----hhHHHHHHH
Confidence 11 34577889999999999984332 123355666
Q ss_pred ceeeeccCCCcccccccceeeccCCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
...+.....+..++.++|++.|....
T Consensus 101 ~~~~~~~~~~~~~iilv~~k~D~~~~ 126 (173)
T d2fu5c1 101 IRNIEEHASADVEKMILGNKCDVNDK 126 (173)
T ss_dssp HHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred HHHhhhhccCCceEEEEEecccchhh
Confidence 66666677788899999999998643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.55 E-value=2.5e-15 Score=128.10 Aligned_cols=121 Identities=19% Similarity=0.212 Sum_probs=75.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHH---h
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEK---L 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~---~ 268 (330)
+.++||||++.|...+...+..+|++++|.|+.+.-.-+.. ..+..+.. .+.|+|+|.||+|+......... .
T Consensus 72 ~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~ 147 (227)
T d1g7sa4 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFM 147 (227)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred cccccccceecccccchhcccccceEEEEEecccCcccchh--HHHHHhhc--CCCeEEEEEECccCCCchhhhhhHHHH
Confidence 45778888888888888888999999999999764333332 23333433 37899999999999865321110 0
Q ss_pred hhCCCCCc-----CHHHH----HHHHHH-------------hCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 269 AKNKQKPI-----SFEQG----EKLAKE-------------LKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 269 ~~~~~~~v-----~~~~~----~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
........ ..+.. ..+.+. .+..+++.+||.+|.|++++++.+...+-
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~ 217 (227)
T d1g7sa4 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (227)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00000000 00111 111111 11257899999999999999998877653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.7e-15 Score=122.59 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=91.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-+||++||++|||||||+.||.++.|..++.++.+.. +...+.+++..+.+.+|++++
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g--------------------- 62 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG--------------------- 62 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSS---------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCC---------------------
Confidence 3799999999999999999999999999999988744 477888999999999998876
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.++| ..++..++++++++++|||... .........|
T Consensus 63 ---~e~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~-----~~S~~~~~~~ 98 (175)
T d2f9la1 63 ---QERY------------------------------------RRITSAYYRGAVGALLVYDIAK-----HLTYENVERW 98 (175)
T ss_dssp ---GGGT------------------------------------TCCCHHHHTTCSEEEEEEETTC-----HHHHHTHHHH
T ss_pred ---cHHH------------------------------------HHHHHHHhhccCeEEEEEECCC-----cccchhHHHH
Confidence 2222 3456678999999999998332 2223345566
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+..+..+..|+.++|+|.|+..
T Consensus 99 ~~~i~~~~~~~~piilvgnK~Dl~~ 123 (175)
T d2f9la1 99 LKELRDHADSNIVIMLVGNKSDLRH 123 (175)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHhcCCCCcEEEEEeeecccc
Confidence 6666666677889999999999853
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.5e-15 Score=122.52 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=94.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||..+.|.+.+.+|.+..+ ...+..+...+.+.+||+++..+
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------------- 66 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER------------------- 66 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchh-------------------
Confidence 7999999999999999999999999999999998665 56788899999999999886221
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
| ..++..+++++++++++||... ......+..|.
T Consensus 67 -----~------------------------------------~~~~~~~~~~~~~~i~v~d~~~-----~~s~~~~~~~~ 100 (174)
T d2bmea1 67 -----F------------------------------------RSVTRSYYRGAAGALLVYDITS-----RETYNALTNWL 100 (174)
T ss_dssp -----G------------------------------------HHHHHTTSTTCSEEEEEEETTC-----HHHHHTHHHHH
T ss_pred -----h------------------------------------hhhHHHHhhhCCEEEEEEeccc-----chhHHHHhhhh
Confidence 1 3456678999999999998442 22333455566
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+.....+..|+.++|+|.|+..
T Consensus 101 ~~~~~~~~~~~piivv~nK~D~~~ 124 (174)
T d2bmea1 101 TDARMLASQNIVIILCGNKKDLDA 124 (174)
T ss_dssp HHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cccccccCCceEEEEEEecccccc
Confidence 666566667889999999999843
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3e-15 Score=122.02 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=88.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||.++.|.+.+.++..... .......+.++.+.+|++++.
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~--------------------- 62 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--------------------- 62 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG---------------------
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCc---------------------
Confidence 7999999999999999999999999999999886554 667788899999999987761
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.. + ..+++.+++++|++++|||.. .......+..|+
T Consensus 63 ---~~----~--------------------------------~~~~~~~~~~~d~~ilv~d~~-----~~~sf~~~~~~~ 98 (173)
T d2a5ja1 63 ---ES----F--------------------------------RSITRSYYRGAAGALLVYDIT-----RRETFNHLTSWL 98 (173)
T ss_dssp ---GG----T--------------------------------SCCCHHHHTTCSEEEEEEETT-----CHHHHHTHHHHH
T ss_pred ---cc----h--------------------------------hhHHHHHhhccCEEEEEEeec-----ChHHHHhHHHHH
Confidence 11 1 446778899999999999832 222333555666
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.....+..|+.++|+|.|+.
T Consensus 99 ~~~~~~~~~~~piilv~nK~D~~ 121 (173)
T d2a5ja1 99 EDARQHSSSNMVIMLIGNKSDLE 121 (173)
T ss_dssp HHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHhCCCCCeEEEEecCCchh
Confidence 66666667788999999999984
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=3.9e-15 Score=120.42 Aligned_cols=117 Identities=21% Similarity=0.405 Sum_probs=83.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|+.+.|.+.+.||++..+ .+.+.+++..+.+.+||+++.
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~--------------------- 61 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--------------------- 61 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG---------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 7999999999999999999999999999999998666 678999999999999998872
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+++ +.+++.++++++++++|||.... + ....+..|.
T Consensus 62 ---~~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~--~---s~~~~~~~~ 97 (166)
T d1g16a_ 62 ---ERF------------------------------------RTITTAYYRGAMGIILVYDITDE--R---TFTNIKQWF 97 (166)
T ss_dssp ---GGT------------------------------------SCCCHHHHTTEEEEEEEEETTCH--H---HHHTHHHHH
T ss_pred ---hhh------------------------------------HHHHHHHHhcCCEEEEEEECCCc--c---CHHHHHhhh
Confidence 222 34567789999999999984432 2 223444455
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
...........++..++++.+..
T Consensus 98 ~~~~~~~~~~~~~i~~~~k~d~~ 120 (166)
T d1g16a_ 98 KTVNEHANDEAQLLLVGNKSDME 120 (166)
T ss_dssp HHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhccccCcceeeeecchhhhh
Confidence 44445555666667777777663
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.46 E-value=8.4e-15 Score=121.80 Aligned_cols=112 Identities=11% Similarity=0.111 Sum_probs=75.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+.|++|++.|.......+..+|+++++.|..+........ ..+..+... ...+++++.||+|+.+....
T Consensus 80 ~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~-e~~~~~~~~-~~~~iiv~inK~D~~d~~~~------- 150 (195)
T d1kk1a3 80 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR-EHLMALQII-GQKNIIIAQNKIELVDKEKA------- 150 (195)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-TCCCEEEEEECGGGSCHHHH-------
T ss_pred EeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhH-HHHHHHHHh-cCccceeeeecccchhhHHH-------
Confidence 567899999999888777888999999999988753222222 122222222 24568999999999764211
Q ss_pred CCCCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 272 KQKPISFEQGEKLAKELK--AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
....++...+....+ .++++++||++|.|++++++.+...+
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 151 ---LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp ---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 112233444444332 26799999999999999999887643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.2e-14 Score=114.47 Aligned_cols=119 Identities=20% Similarity=0.317 Sum_probs=90.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+++||+++|++|||||||+.||..+.|.+++.++.+..+ .+.+.+++..+.+.+||+++....
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 69 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF---------------- 69 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhh----------------
Confidence 589999999999999999999999999999999987655 668889999999999998862211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.+++.++++++++++||+... .........
T Consensus 70 --------------------------------------------~~~~~~~~~~~~~ii~v~d~~~-----~~s~~~~~~ 100 (177)
T d1x3sa1 70 --------------------------------------------RTLTPSYYRGAQGVILVYDVTR-----RDTFVKLDN 100 (177)
T ss_dssp --------------------------------------------CCSHHHHHTTCCEEEEEEETTC-----HHHHHTHHH
T ss_pred --------------------------------------------HHHHHHHHhcCCEEEEEEECCC-----ccccccchh
Confidence 3456778999999999998332 122234444
Q ss_pred cceeeec-cCCCcccccccceeeccC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.. ......++..++++.|..
T Consensus 101 ~~~~i~~~~~~~~~~i~~~~nk~d~~ 126 (177)
T d1x3sa1 101 WLNELETYCTRNDIVNMLVGNKIDKE 126 (177)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhhcccccccceeeEEEeeccccc
Confidence 5555433 334556777888888764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=4.2e-14 Score=116.21 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=88.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||+++.|.+++.||++.++ .+.....+..+.+.+|++++..
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~-------------------- 62 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE-------------------- 62 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG--------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcc--------------------
Confidence 7999999999999999999999999999999997655 6688888999999999876510
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+ ..++..+++.+++++++||... ......+..|+
T Consensus 63 --------~~--------------------------------~~~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~~~~ 97 (184)
T d1vg8a_ 63 --------RF--------------------------------QSLGVAFYRGADCCVLVFDVTA-----PNTFKTLDSWR 97 (184)
T ss_dssp --------GG--------------------------------SCSCCGGGTTCSEEEEEEETTC-----HHHHHTHHHHH
T ss_pred --------cc--------------------------------cccccccccCccEEEEeecccc-----hhhhhcchhhH
Confidence 00 3345678899999999998432 22223445565
Q ss_pred eeeecc----CCCcccccccceeeccC
Q psy9997 163 WFISTE----HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~----~~~~~~~~~~g~~~~~~ 185 (330)
..+..+ .....|+.++|+|.|+.
T Consensus 98 ~~i~~~~~~~~~~~ip~ilv~nK~Dl~ 124 (184)
T d1vg8a_ 98 DEFLIQASPRDPENFPFVVLGNKIDLE 124 (184)
T ss_dssp HHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHHHhccccccCCCEEEEEEeeccc
Confidence 544332 23456889999999985
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=8.2e-14 Score=113.34 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=78.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeE-EEE-ECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVM-IGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.||.++.|.+.+.||.+..... ... .+...+.+.+|++++....
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------------- 65 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF----------------- 65 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhh-----------------
Confidence 799999999999999999999999999999998766543 333 3455677888877652111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++.+++++++||..... + ...+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~~~--s---~~~~~~~ 97 (175)
T d1ky3a_ 66 -------------------------------------------QSLGVAFYRGADCCVLVYDVTNAS--S---FENIKSW 97 (175)
T ss_dssp ------------------------------------------------CCSTTCCEEEEEEETTCHH--H---HHTHHHH
T ss_pred -------------------------------------------hhHHHHHhhccceEEEEeeccccc--c---cchhhhc
Confidence 334667899999999999843321 1 2334455
Q ss_pred ceeeec----cCCCcccccccceeeccCC
Q psy9997 162 FWFIST----EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~----~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ......|+.++|+|.|+..
T Consensus 98 ~~~i~~~~~~~~~~~~piilv~nK~Dl~~ 126 (175)
T d1ky3a_ 98 RDEFLVHANVNSPETFPFVILGNKIDAEE 126 (175)
T ss_dssp HHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred chhhhhhhhhcccccCcEEEEecccchhh
Confidence 554432 2335778999999999853
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.41 E-value=4.8e-14 Score=118.06 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=75.5
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+.|++|+..|.......+..+|++++|.|..+.-......+.|. +.....-.|+|++.||+|+........
T Consensus 87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~--~~~~~~i~~iIV~vNK~Dl~~~~~~~~---- 160 (205)
T d2qn6a3 87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV--ALGIIGVKNLIIVQNKVDVVSKEEALS---- 160 (205)
T ss_dssp EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHH--HHHHTTCCCEEEEEECGGGSCHHHHHH----
T ss_pred EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHH--HHHHcCCceeeeccccCCCccchHHHH----
Confidence 35689999999998777777889999999999876421112111121 122223458999999999976422111
Q ss_pred CCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 271 NKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
..++...+.... ..++++.+||++|.|++++++.+...+=
T Consensus 161 ------~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 161 ------QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp ------HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ------HHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence 112233333322 2367999999999999999999877653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=7.5e-14 Score=114.24 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=50.8
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH-hCCeeE
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE-LKAVKY 293 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~ 293 (330)
+.++.+.+.......... .++..+.. ...|+++++||+|+...... ....++.++..+. .+..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~~k~D~~~~~~~----------~~~~~~~~~~l~~~~~~~~~ 165 (188)
T d1puia_ 100 QGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGAR----------KAQLNMVREAVLAFNGDVQV 165 (188)
T ss_dssp EEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHHH----------HHHHHHHHHHHGGGCSCEEE
T ss_pred eEEEEeecccccchhHHH--HHHHHhhh--ccccccchhhhhhccCHHHH----------HHHHHHHHHHHHhhCCCCcE
Confidence 344455555443333322 24444433 47899999999999764211 1111222222222 234679
Q ss_pred EEEeeccCCCHHHHHHHHHHH
Q psy9997 294 VECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+.+||++|.|++++++.|...
T Consensus 166 i~vSA~~g~Gid~L~~~i~~~ 186 (188)
T d1puia_ 166 ETFSSLKKQGVDKLRQKLDTW 186 (188)
T ss_dssp EECBTTTTBSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999987553
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.34 E-value=3.4e-13 Score=111.78 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=71.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+.|++|+..|.......+..+|++++|.|..+...-+... .|. .+. .....|+|++.||.|+..+....+
T Consensus 68 ~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~-~~~-~a~-~~~~~~iIv~iNK~D~~~~~~~~~----- 139 (196)
T d1d2ea3 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE-HLL-LAR-QIGVEHVVVYVNKADAVQDSEMVE----- 139 (196)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHH-HHH-HTTCCCEEEEEECGGGCSCHHHHH-----
T ss_pred EEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHH-HHH-HHH-HhcCCcEEEEEecccccccHHHHH-----
Confidence 345666666777666666778899999999998643322221 121 221 223468999999999976422111
Q ss_pred CCCCcCHHHHHHHHHHhCC----eeEEEEeeccC----------CCHHHHHHHHHHH
Q psy9997 272 KQKPISFEQGEKLAKELKA----VKYVECSALTQ----------KGLKNVFDEAILA 314 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~----------~~v~~~f~~l~~~ 314 (330)
.-..+.+.+...++. .+++.+||++| .+++++++++...
T Consensus 140 ----~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~ 192 (196)
T d1d2ea3 140 ----LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (196)
T ss_dssp ----HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence 112345556655543 67999999998 5889998877554
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=1.1e-13 Score=115.51 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=75.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
...|+++|++|||||||+++|+++++. ++.... .....++.....+.+||++|+++++..
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--------------- 62 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQ-EPLSAADYDGSGVTLVDFPGHVKLRYK--------------- 62 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCS-SCEEETTGGGSSCEEEECCCCGGGTHH---------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEec-ceEEEEEeCCeEEEEEecccccchhhH---------------
Confidence 357899999999999999999998753 232211 122334445556677888877432211
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+..........++.+++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~~i~~vd 82 (209)
T d1nrjb_ 63 ------------------------------------------------------------LSDYLKTRAKFVKGLIFMVD 82 (209)
T ss_dssp ------------------------------------------------------------HHHHHHHHGGGEEEEEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHhhhccccceEEE
Confidence 01111122345678888888
Q ss_pred cC-ChhhHhhhhhcchhhhh----hc-CCCCcEEEEEeccCCCCC
Q psy9997 223 VV-SPSSFENVKEKWVPEIT----HH-CQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 223 ~~-~~~s~~~~~~~~~~~i~----~~-~~~~piilV~nK~Dl~~~ 261 (330)
.. +..+++.+. .|+..+. .. ..++|+++|+||+|+...
T Consensus 83 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 83 STVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA 126 (209)
T ss_dssp TTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred EecccccHHHHH-HHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence 65 567777776 5554432 22 258999999999999764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.31 E-value=4.2e-13 Score=107.98 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=82.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||+.||..+.|.+++.||++..+. .+..+ .+.+.+||.++...+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~--~~~~~i~D~~G~~~~----------------- 60 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRF----------------- 60 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHH-----------------
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeee--eEEEEEeeccccccc-----------------
Confidence 4789999999999999999999999999999999875543 23334 467788877651111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
...+..+++++++++++||.... ..+ .....|
T Consensus 61 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~--~~~---~~~~~~ 92 (164)
T d1zd9a1 61 -------------------------------------------RSMWERYCRGVSAIVYMVDAADQ--EKI---EASKNE 92 (164)
T ss_dssp -------------------------------------------HTTHHHHHTTCSEEEEEEETTCG--GGH---HHHHHH
T ss_pred -------------------------------------------cccccccccccchhhcccccccc--ccc---chhhhh
Confidence 23455688999999999985422 111 222333
Q ss_pred ceeee-ccCCCcccccccceeeccCC
Q psy9997 162 FWFIS-TEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+. ....+..|+.++|||.|+..
T Consensus 93 ~~~~~~~~~~~~~pi~lv~nK~Dl~~ 118 (164)
T d1zd9a1 93 LHNLLDKPQLQGIPVLVLGNKRDLPG 118 (164)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred hhhhhhhhcccCCcEEEEEeccccch
Confidence 33332 23456788999999999853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.22 E-value=3.6e-12 Score=102.32 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=77.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||+.+|..+.+ .++.||++... ..+.. ..+.+.+||+++...+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~----------------- 59 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI-KTLEH--RGFKLNIWDVGGQKSL----------------- 59 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEE-EEEEE--TTEEEEEEEECCSHHH-----------------
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeee-eeccc--cccceeeeecCcchhh-----------------
Confidence 579999999999999999999988776 56778876332 23333 3467788987762221
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+..+++.+++++++||...... ......|
T Consensus 60 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~d~~~-----~~~~~~~ 91 (165)
T d1ksha_ 60 -------------------------------------------RSYWRNYFESTDGLIWVVDSADRQR-----MQDCQRE 91 (165)
T ss_dssp -------------------------------------------HTTGGGGCTTCSEEEEEEETTCGGG-----HHHHHHH
T ss_pred -------------------------------------------hhHHHhhhhhhhcceeeeecccchh-----HHHHHHh
Confidence 3346678999999999997443211 1111122
Q ss_pred c-eeeeccCCCcccccccceeeccCC
Q psy9997 162 F-WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+ ..+........|+.++|||.|+..
T Consensus 92 ~~~~~~~~~~~~~p~iiv~nK~Dl~~ 117 (165)
T d1ksha_ 92 LQSLLVEERLAGATLLIFANKQDLPG 117 (165)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hhhhhhhcccCCCceEEEEecccccc
Confidence 2 222223446688999999999864
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.15 E-value=1.8e-11 Score=101.90 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=58.5
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.+.||||+..|.......+..+|+++||.|+.+....+... .| ..+.. .++| +|++.||.|+.......+
T Consensus 70 ~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~-~~~~~--~gi~~iiv~iNK~D~~~~~~~~~----- 140 (204)
T d2c78a3 70 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE-HI-LLARQ--VGVPYIVVFMNKVDMVDDPELLD----- 140 (204)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HH-HHHHH--TTCCCEEEEEECGGGCCCHHHHH-----
T ss_pred EEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HH-HHHHH--cCCCeEEEEEEecccCCCHHHHH-----
Confidence 34555555777666666778899999999998766555543 23 22222 2555 778899999965321111
Q ss_pred CCCCcCHHHHHHHHHHhC----CeeEEEEeeccC
Q psy9997 272 KQKPISFEQGEKLAKELK----AVKYVECSALTQ 301 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~ 301 (330)
.-.++.+.+...++ ..+++..||..+
T Consensus 141 ----~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 141 ----LVEMEVRDLLNQYEFPGDEVPVIRGSALLA 170 (204)
T ss_dssp ----HHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred ----HHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence 11234444444433 256888888644
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.12 E-value=5.3e-12 Score=103.09 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=77.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||+.||..+.+. ...||.+.... ..... .+.+.+||+++..
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~------------------- 72 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE-TLSYK--NLKLNVWDLGGQT------------------- 72 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEE-EEEET--TEEEEEEEEC----------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEE-EEeeC--CEEEEEEeccccc-------------------
Confidence 4799999999999999999999988774 45566653332 22333 4667888777511
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ +.++..+++++++++++||.+... .......|
T Consensus 73 -----~~------------------------------------~~~~~~~~~~~~~ii~v~d~~d~~-----s~~~~~~~ 106 (182)
T d1moza_ 73 -----SI------------------------------------RPYWRCYYADTAAVIFVVDSTDKD-----RMSTASKE 106 (182)
T ss_dssp ------C------------------------------------CTTGGGTTTTEEEEEEEEETTCTT-----THHHHHHH
T ss_pred -----cc------------------------------------chhHHhhhccceeEEEEeeecccc-----cchhHHHH
Confidence 11 456778999999999999844321 11223334
Q ss_pred ceee-eccCCCcccccccceeeccCC
Q psy9997 162 FWFI-STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~-~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+... ........|+.++|||.|+..
T Consensus 107 l~~~~~~~~~~~~piliv~NK~Dl~~ 132 (182)
T d1moza_ 107 LHLMLQEEELQDAALLVFANKQDQPG 132 (182)
T ss_dssp HHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHHHhhccCCcceEEEEEeecccc
Confidence 4333 334456788999999999853
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.12 E-value=4.3e-11 Score=100.78 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=66.8
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~ 269 (330)
.+.+.|+||++.|.......+..+|++++|.|+.+...-+... . +..+.. .++| +|++.||.|+....+..-
T Consensus 90 ~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e-~-~~~~~~--~gv~~iiv~vNK~D~~~~~~~~~--- 162 (222)
T d1zunb3 90 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR-H-SYIASL--LGIKHIVVAINKMDLNGFDERVF--- 162 (222)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-H-HHHHHH--TTCCEEEEEEECTTTTTSCHHHH---
T ss_pred EEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH-H-HHHHHH--cCCCEEEEEEEccccccccceeh---
Confidence 3567888888998877777888999999999997532222221 1 111111 2544 889999999986432111
Q ss_pred hCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHH
Q psy9997 270 KNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLK 305 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~ 305 (330)
....++...+.+..+. ++|+++||.+|.|+.
T Consensus 163 -----~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 163 -----ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp -----HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred -----hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 1122345566665532 578999999999984
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.09 E-value=8.5e-12 Score=101.03 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=76.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||++||..+.+... .+|.+..+ .......+.+.+||.++....
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~----------------- 69 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV---ETVTYKNVKFNVWDVGGQDKI----------------- 69 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE---EEEEETTEEEEEEEESCCGGG-----------------
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE---EEeeccceeeEEecCCCcchh-----------------
Confidence 468999999999999999999998887543 34433222 222333466778876651111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+..++++++++++|||.+. ......+..|
T Consensus 70 -------------------------------------------~~~~~~~~~~~~~ii~v~D~s~-----~~~~~~~~~~ 101 (173)
T d1e0sa_ 70 -------------------------------------------RPLWRHYYTGTQGLIFVVDCAD-----RDRIDEARQE 101 (173)
T ss_dssp -------------------------------------------HHHHGGGTTTCCEEEEEEETTC-----GGGHHHHHHH
T ss_pred -------------------------------------------hhHHHhhhcccceEEEEEeccc-----chhHHHHHHH
Confidence 3345678999999999998442 1122233334
Q ss_pred ceee-eccCCCcccccccceeeccCC
Q psy9997 162 FWFI-STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~-~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+... ........|+.++|||.|++.
T Consensus 102 l~~~~~~~~~~~~piiiv~NK~Dl~~ 127 (173)
T d1e0sa_ 102 LHRIINDREMRDAIILIFANKQDLPD 127 (173)
T ss_dssp HHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhhhcccccceeeeeeecccccc
Confidence 4333 334456788999999999853
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.02 E-value=8.5e-10 Score=95.30 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=41.5
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
..|.......++.+|++++|.|..+.-.-.... .|. ...+ .++|.+++.||.|.....
T Consensus 82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~-~w~-~a~~--~~lP~i~fINKmDr~~ad 139 (276)
T d2bv3a2 82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWR-QAEK--YKVPRIAFANKMDKTGAD 139 (276)
T ss_dssp SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHH-HHH-HHHT--TTCCEEEEEECTTSTTCC
T ss_pred hhhHHHHHHHHHhhhheEEeccccCCcchhHHH-HHH-HHHH--cCCCEEEEEecccccccc
Confidence 555555555677899999999998766655554 443 3333 389999999999998753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.01 E-value=3.1e-11 Score=97.67 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=74.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||++||..+.|.. ..++.+.. ...+...+ +.+.+|+.++...+
T Consensus 15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~-~~~i~~~~--~~~~i~d~~g~~~~----------------- 73 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKI----------------- 73 (176)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEE-EEEEEETT--EEEEEEECSSCGGG-----------------
T ss_pred CEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeee-EEEeccCC--eeEeEeeccccccc-----------------
Confidence 57999999999999999999999988853 33343321 23344443 56677765541111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+..+++.+|+++++||.+.. ........|
T Consensus 74 -------------------------------------------~~~~~~~~~~~~~ii~v~d~~d~-----~s~~~~~~~ 105 (176)
T d1fzqa_ 74 -------------------------------------------RPYWRSYFENTDILIYVIDSADR-----KRFEETGQE 105 (176)
T ss_dssp -------------------------------------------HHHHHHHHTTCSEEEEEEETTCG-----GGHHHHHHH
T ss_pred -------------------------------------------hhHHHHHhhccceeEEeeccccc-----cchhhhhhh
Confidence 33456789999999999985431 111222333
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
...... ......|+.++|+|.|+..
T Consensus 106 ~~~~~~~~~~~~~pillv~nK~Dl~~ 131 (176)
T d1fzqa_ 106 LTELLEEEKLSCVPVLIFANKQDLLT 131 (176)
T ss_dssp HHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred hhhhhhhhccCCCeEEEEEEeccccc
Confidence 333322 3345678899999999853
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=5.5e-11 Score=109.01 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=37.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceee---cceEEEEECCceeeeeeeecCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD---NYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.+++|+++|.+|+|||||+|.+.+....+.-....+. ..............+.+|||||.
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~ 117 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCc
Confidence 3689999999999999999999985532222211111 11111222223334678999997
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.97 E-value=5.2e-11 Score=100.59 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=64.9
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh------hhcCCCCcEEEEEeccCCCCCchhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI------THHCQKTPFLLVGTQIDLREDAPTL 265 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i------~~~~~~~piilV~nK~Dl~~~~~~~ 265 (330)
+.+.|+||+..|...+...++-+|++++|.|+.+-..-... .+..+. .......++|++.||.|+.......
T Consensus 83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~--~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~ 160 (224)
T d1jnya3 83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGM--SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 160 (224)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHH--STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccc--cccchhHHHHHHHHHhCCCceEEEEEcccCCCccccH
Confidence 44567777788888777888899999999999864221111 011111 1112345789999999997532211
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKN 306 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 306 (330)
.. ...-.++...+...++ ..+++++||..|.|+.+
T Consensus 161 ~~------~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 161 KR------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp HH------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HH------HHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 10 0111233444545443 25689999999999854
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.97 E-value=2.8e-10 Score=97.22 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChh---hHhhhhh--cchhhhhhcCCCC-cEEEEEeccCCCCCchh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFENVKE--KWVPEITHHCQKT-PFLLVGTQIDLREDAPT 264 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~--~~~~~i~~~~~~~-piilV~nK~Dl~~~~~~ 264 (330)
.+.+.|+||+..|..........+|++++|.|+.+.. ++....| ..+. +... .++ +++++.||.|+......
T Consensus 103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~-l~~~-~~i~~iiv~iNKmD~~~~~~~ 180 (245)
T d1r5ba3 103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LART-QGINHLVVVINKMDEPSVQWS 180 (245)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHH-TTCSSEEEEEECTTSTTCSSC
T ss_pred eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHH-HHHH-cCCCeEEEEEEcCCCCccchh
Confidence 3567788888999888888889999999999998632 1111100 0111 1111 244 58899999999753211
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhC------CeeEEEEeeccCCCHHHHHH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELK------AVKYVECSALTQKGLKNVFD 309 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~ 309 (330)
.... ..-.++...+.++.. .++++++||++|+|+.++++
T Consensus 181 e~~~------~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 181 EERY------KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp HHHH------HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHH------HHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 1100 001122333333321 25799999999999977644
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=98.96 E-value=1.3e-10 Score=91.87 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=74.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||++|+..+.|...+..+.. .....+...+.+.+|+.++....
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~------------------- 57 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDKI------------------- 57 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC----CEEEEECSSCEEEEEECCCCGGG-------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceee----EEEEEeeeeEEEEEecCCCcccc-------------------
Confidence 6999999999999999999999998766555432 23344556677788866541110
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+..+..+++++++++++|+.... .....+..|..
T Consensus 58 -----------------------------------------~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~ 91 (160)
T d1r8sa_ 58 -----------------------------------------RPLWRHYFQNTQGLIFVVDSNDR-----ERVNEAREELM 91 (160)
T ss_dssp -----------------------------------------HHHHHHHTTTCSEEEEEEETTCG-----GGHHHHHHHHH
T ss_pred -----------------------------------------hhhhhhhhccceeEEEEEEecCh-----HHHHHHHHHHH
Confidence 33456778999999999975432 11222333433
Q ss_pred eeec-cCCCcccccccceeeccC
Q psy9997 164 FIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
.+.. ......++..++++.|+.
T Consensus 92 ~~~~~~~~~~~~i~~v~~k~d~~ 114 (160)
T d1r8sa_ 92 RMLAEDELRDAVLLVFANKQDLP 114 (160)
T ss_dssp HHHTCGGGTTCEEEEEEECTTST
T ss_pred HHHHhhcccCceEEEEeeccccc
Confidence 3322 344566788889988875
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=98.88 E-value=4.4e-09 Score=90.48 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=38.9
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
..|.......++.+|++++|.|..+...-.... .|. .+.+ .++|.+++.||.|..
T Consensus 78 ~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~-~~~-~~~~--~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 78 GDFVGEIRGALEAADAALVAVSAEAGVQVGTER-AWT-VAER--LGLPRMVVVTKLDKG 132 (267)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHH--TTCCEEEEEECGGGC
T ss_pred hhhhhhhhhhhcccCceEEEeeccCCccchhHH-HHH-hhhh--ccccccccccccccc
Confidence 555555555677899999999998766555554 343 3333 378999999999974
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.80 E-value=1.8e-09 Score=92.81 Aligned_cols=59 Identities=25% Similarity=0.401 Sum_probs=41.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
...++|+++|.+|+|||||+|.+++..... ...++.-.........++ ..+.++||||.
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl 90 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGL 90 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCS
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecc
Confidence 457899999999999999999999876332 223333333333445555 45789999997
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=6.3e-10 Score=94.53 Aligned_cols=102 Identities=11% Similarity=0.124 Sum_probs=62.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhh---Hh---hhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPT 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~ 264 (330)
+.+.|+||+..|.......+..+|+++||.|.+.... +. +..+.|+ +.+. -++| +|++.||.|+...+..
T Consensus 86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~--~~~~-~gv~~iiv~iNKmD~~~~d~~ 162 (239)
T d1f60a3 86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL--LAFT-LGVRQLIVAVNKMDSVKWDES 162 (239)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH--HHHH-TTCCEEEEEEECGGGGTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH--HHHH-cCCCeEEEEEECCCCCCCCHH
Confidence 4455666667777666677888999999999975321 10 1110111 1111 2454 8889999999765321
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGL 304 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v 304 (330)
+- ....++...+....+. ++++.+||..|.|+
T Consensus 163 ~~--------~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 163 RF--------QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp HH--------HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred HH--------HHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 10 1122445556665543 56899999999986
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=8.2e-10 Score=91.62 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=38.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+|+++|++|||||||+++|..+.+...+ ||+..++......+...+.+.+|++.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g 56 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPG 56 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccc
Confidence 6899999999999999999999987654 666554432222234455666675554
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=98.70 E-value=1.1e-08 Score=81.06 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=28.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv 36 (330)
++||+++|++|||||||+++|..+.|... .+|.
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~ 37 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTI 37 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcce-eccc
Confidence 89999999999999999999999998653 3444
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2e-09 Score=86.12 Aligned_cols=46 Identities=37% Similarity=0.663 Sum_probs=40.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI 106 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 106 (330)
|+++||+++|++|||||||++||+++.|.+.+.||+++.+.....+
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~ 46 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV 46 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeec
Confidence 6889999999999999999999999999999999998766655444
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.8e-09 Score=86.42 Aligned_cols=41 Identities=39% Similarity=0.713 Sum_probs=37.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
|+++||+++|++|||||||++||..++|.+.+.||++..+.
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~ 41 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 41 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc
Confidence 78899999999999999999999999999999999876553
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=2.8e-09 Score=87.52 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=42.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTI 64 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (330)
+.+||++||++|||||||+.|| .|.+.+.||++... ..++.+.+.+++|++++.+..
T Consensus 1 r~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~---~~~~~~~~~~~~~D~~gq~~~ 57 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQRSE 57 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEE---EEEEETTEEEEEEEECC----
T ss_pred CeEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEE---EEEeeeeeeeeeecccceeee
Confidence 4689999999999999999999 36788999998433 233445667889988874443
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.64 E-value=1.3e-09 Score=92.29 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=68.1
Q ss_pred cccccccccccccccccCcc-----ccCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 191 DRSLFDTAGQEDYDRLRPLS-----YPQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~-----~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
.+.+.|++|+..+...+... ....+.++++.|.. ++..+.... +...........|.++|.||+|+....
T Consensus 96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~--l~~~~~~~~~~~~~ivvinK~D~~~~~ 173 (244)
T d1yrba1 96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR--FFALLIDLRLGATTIPALNKVDLLSEE 173 (244)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHH--HHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHH--HHHHHHHHHhCCCceeeeeccccccHH
Confidence 35567888887653322221 12356788888864 455544432 122211222378999999999998753
Q ss_pred hhhHHhh------------hCCC---CCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 263 PTLEKLA------------KNKQ---KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 263 ~~~~~~~------------~~~~---~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
....... .... +....+......+..+.++++++||++|+|+++++..+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 2211000 0000 00111112222233455789999999999999999887654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.5e-09 Score=85.99 Aligned_cols=42 Identities=100% Similarity=1.538 Sum_probs=38.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 102 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~ 102 (330)
|+.+||+++|++|||||||++||+.++|.+.+.||+++.+..
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~ 42 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 42 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecce
Confidence 678999999999999999999999999999999998766544
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.6e-09 Score=83.81 Aligned_cols=41 Identities=49% Similarity=0.740 Sum_probs=37.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
|+++||+++|++|||||||++||+++.|...+.++.++.+.
T Consensus 1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~ 41 (166)
T d1ctqa_ 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR 41 (166)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec
Confidence 67899999999999999999999999999999999876654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=3.7e-09 Score=84.64 Aligned_cols=40 Identities=33% Similarity=0.607 Sum_probs=36.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 102 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~ 102 (330)
.+||+++|++|||||||++||+.+.|.+.|.||++..|..
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~ 41 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH 41 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc
Confidence 5899999999999999999999999999999999877654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=3.1e-08 Score=77.79 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=28.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF 37 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~ 37 (330)
||++||++|||||||++|+..+.+. .+.||++
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~ 33 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH 33 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceee
Confidence 8999999999999999999998874 5677764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=6.4e-09 Score=83.02 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=41.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEEC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG 107 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 107 (330)
.+.+||+++|++|||||||++||++++|.+.+.||++..|...+.++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~ 48 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVN 48 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEET
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecC
Confidence 35689999999999999999999999999999999988887666554
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=98.57 E-value=7.9e-09 Score=82.69 Aligned_cols=46 Identities=33% Similarity=0.637 Sum_probs=40.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEEC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG 107 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 107 (330)
+-+||+++|++|||||||++||+.++|...|.||+++.|...+.++
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~ 48 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD 48 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEET
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccc
Confidence 4579999999999999999999999999999999998877665543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=4.3e-09 Score=93.58 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=51.7
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~ 260 (330)
.+.+.||||+..|.......++-+|++++|.|+.+.-..+... .|..... .++|+++|.||+|...
T Consensus 97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~---~~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG---ERIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH---TTCEEEEEEECHHHHH
T ss_pred EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHH---cCCCeEEEEECccccc
Confidence 3567888898999888888888999999999998876666655 3433332 3799999999999854
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=8.5e-09 Score=83.65 Aligned_cols=47 Identities=79% Similarity=1.321 Sum_probs=40.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEEC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG 107 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 107 (330)
.+.+||+++|++|||||||++||+++.|.+.+.||+++.+...+..+
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~ 49 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD 49 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEET
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeecc
Confidence 46799999999999999999999999999999999987766655443
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-08 Score=82.30 Aligned_cols=47 Identities=40% Similarity=0.635 Sum_probs=40.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI 106 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 106 (330)
+.+.+||+++|++|||||||++||+.++|.+.+.||..+.+...+.+
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~ 49 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSV 49 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEE
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEecc
Confidence 45679999999999999999999999999999999887666554443
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.1e-08 Score=81.86 Aligned_cols=40 Identities=35% Similarity=0.715 Sum_probs=36.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 102 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~ 102 (330)
.+||+++|++|||||||++||+++.|.+.+.||+++.+..
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~ 41 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ 41 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecccc
Confidence 5899999999999999999999999999999999866543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=98.46 E-value=4.6e-08 Score=78.29 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=26.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS 30 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~ 30 (330)
+++||+++|++|||||||+.|+..+.+..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~ 42 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVH 42 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 47999999999999999999999988754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=2.2e-08 Score=80.04 Aligned_cols=46 Identities=43% Similarity=0.675 Sum_probs=40.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI 106 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 106 (330)
++.+||+++|++|||||||++||.++.|.+.+.||.++.+.+.+.+
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~ 47 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEI 47 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecccccccc
Confidence 4579999999999999999999999999999999998877665544
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=98.45 E-value=5.9e-08 Score=78.09 Aligned_cols=54 Identities=20% Similarity=0.121 Sum_probs=34.9
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+|+++|.+|||||||+++++..... +....|............+. .+.+||+++
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~~~DtpG 62 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRR--QIVFVDTPG 62 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTE--EEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeee--eeeeccccc
Confidence 6999999999999999999976532 22333333333333444443 456677665
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=2.6e-08 Score=79.36 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=37.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
|+++||+++|++|||||||++||..++|.+.+.||.+..+.
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~ 42 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM 42 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccc
Confidence 78999999999999999999999999999999988866554
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=3.7e-08 Score=77.71 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=31.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEP 50 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~ 50 (330)
+||+++|.++||||||+++++..... ..+..+............+.+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 50 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCce
Confidence 79999999999999999999976543 222233333333344445443
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=4e-08 Score=78.42 Aligned_cols=39 Identities=31% Similarity=0.641 Sum_probs=35.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
.+||+++|++|||||||++||.+++|.+.+.||.+..+.
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~ 41 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL 41 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceee
Confidence 589999999999999999999999999999999887654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=6.8e-08 Score=76.63 Aligned_cols=117 Identities=25% Similarity=0.404 Sum_probs=97.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++||..+.|.+.+.||++..+ ......++..+.+.+||++|++.+..+.+.++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 48999999999999999999999999999999998665 55888899999999999999999999999999999999999
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
||-.. .. ....+..|+..+.. ..+..|+.++|||.|+.
T Consensus 82 ~d~~~--~~---s~~~~~~~~~~i~~-~~~~~~iilVgnK~Dl~ 119 (164)
T d1z2aa1 82 FSTTD--RE---SFEAISSWREKVVA-EVGDIPTALVQNKIDLL 119 (164)
T ss_dssp EETTC--HH---HHHTHHHHHHHHHH-HHCSCCEEEEEECGGGG
T ss_pred Eeccc--hh---hhhhcccccccccc-cCCCceEEEeeccCCcc
Confidence 98332 11 22345556655433 33567889999999984
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=9.3e-08 Score=76.89 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=88.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.++.+||+++|+.|||||||+++|..++|.. +.++.++.+.+.+.+++..+.+.+|||+|++++ .||+.+|+++
T Consensus 2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i 75 (175)
T d2bmja1 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI 75 (175)
T ss_dssp CCCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence 4678999999999999999999999999854 568888888888999999999999999999654 4899999999
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+|||.+. ..++..-.....|+........+..|+.++|++.|+.
T Consensus 76 lVfd~~~--~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d 119 (175)
T d2bmja1 76 FVFSLED--ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119 (175)
T ss_dssp EEEETTC--HHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred EEeeccc--chhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence 9998432 2333322222223222333344666788888887763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=7.5e-08 Score=76.60 Aligned_cols=39 Identities=36% Similarity=0.679 Sum_probs=34.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
..+||+++|++|||||||++||.+++|.+.+.||.+..+
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 40 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF 40 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccch
Confidence 358999999999999999999999999999999875433
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.28 E-value=2.6e-07 Score=73.99 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=29.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~ 49 (330)
+..||++||++|||||||+.|+..+.+... .|+..... ..+.+++.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~-~~~~~~~~ 57 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS-EELTIAGM 57 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce-eEEEeccc
Confidence 468999999999999999999999887543 45544332 23444443
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.1e-07 Score=75.42 Aligned_cols=118 Identities=23% Similarity=0.398 Sum_probs=98.6
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++||.+++|...+.++.+..+. ....+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 589999999999999999999999999999998877774 5788999999999999999999999999999999999999
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+-.. .........|+..+.....+..++.++|+|.|+.
T Consensus 84 ~d~~~-----~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 122 (166)
T d1z0fa1 84 YDITR-----RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 122 (166)
T ss_dssp EETTC-----HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred eccCc-----hHHHHHHHHHHHHHHhhccccceEEEEcccccch
Confidence 97332 1222344455555555566777888999999874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.25 E-value=8.1e-07 Score=78.17 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=50.7
Q ss_pred cCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh---
Q psy9997 212 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL--- 288 (330)
Q Consensus 212 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--- 288 (330)
.-+|.++++......+..+.+. .-+. ..+-++|.||+|+..... ........+....
T Consensus 163 ~~~D~~v~v~~p~~GD~iQ~~k----~gil----E~aDi~vvNKaD~~~~~~------------~~~~~~~~~~~~l~~~ 222 (323)
T d2qm8a1 163 DLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVNKADDGDGER------------RASAAASEYRAALHIL 222 (323)
T ss_dssp TTSSEEEEEECSCC------CC----TTHH----HHCSEEEEECCSTTCCHH------------HHHHHHHHHHHHHTTB
T ss_pred cccceEEEEeeccchhhhhhhh----hhHh----hhhheeeEeccccccchH------------HHHHHHHHHHHHhhcc
Confidence 3489999998887655443332 2222 246699999999876521 1111111222221
Q ss_pred ------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 ------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 ------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
...+++.+||++|.|++++++.+.+..
T Consensus 223 ~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 223 TPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp CCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 225799999999999999999986543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1e-06 Score=77.55 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=48.9
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh--
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-- 288 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 288 (330)
...+|.+++|.+. ..-++++ ....-+.+ .+-++|.||+|....... .....+.+...+.+
T Consensus 165 ~~~aD~~l~v~~P---~~Gd~iq-~~k~gi~e----~aDi~VvNKaD~~~~~~~----------~~~~~~~~~al~~~~~ 226 (327)
T d2p67a1 165 ARMVDCFISLQIA---GGGDDLQ-GIKKGLME----VADLIVINKDDGDNHTNV----------AIARHMYESALHILRR 226 (327)
T ss_dssp HTTCSEEEEEECC---------C-CCCHHHHH----HCSEEEECCCCTTCHHHH----------HHHHHHHHHHHHHSCC
T ss_pred hhccceEEEEecC---CCchhhh-hhchhhhc----cccEEEEEeecccchHHH----------HHHHHHHHHHhhhccc
Confidence 4468888888654 4445554 34444443 355899999998754211 01111111111111
Q ss_pred ----CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 289 ----KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 289 ----~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
...+++.+||.+|.|++++++.+.+.
T Consensus 227 ~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 227 KYDEWQPRVLTCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp SBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred CCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence 12579999999999999999988653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.3e-07 Score=74.91 Aligned_cols=118 Identities=25% Similarity=0.378 Sum_probs=100.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++||.+++|.+.+.|+++..+. .....++..+.+.+||++|++.+..++..+|++++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 58999999999999999999999999999999976664 47778889999999999999999999999999999999999
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|... ......+..|+........+..++.++|+|.|+..
T Consensus 81 d~~~-----~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (164)
T d1yzqa1 81 DITN-----VNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 119 (164)
T ss_dssp ETTC-----HHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred cccc-----ccchhhhHhhHHHHHHhcCCCceEEEEecccchhh
Confidence 8432 22234566777766666667888999999999843
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=2.4e-07 Score=74.02 Aligned_cols=120 Identities=28% Similarity=0.416 Sum_probs=93.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.-+||+++|++|||||||++||.+++|.+.+.+|++..+ ......++..+.+.+||++|+..+......+++.+++++
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 83 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 83 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence 3457999999999999999999999999999999998776 447788899999999999999999999999999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeec----cCCCcccccccceeeccC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFIST----EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~ 185 (330)
++||..... ....+..|+..+.. ...+..|+.++|+|.|+.
T Consensus 84 ~~~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~ 128 (174)
T d1wmsa_ 84 LTFSVDDSQ-----SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 128 (174)
T ss_dssp EEEETTCHH-----HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEeeeccc-----ccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence 999854321 12233445544322 334567899999999984
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=2.9e-07 Score=73.27 Aligned_cols=121 Identities=22% Similarity=0.378 Sum_probs=101.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||++||.+++|.+.+.+|.+..+. ......+..+.+.+||++|++.+..++..||++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 4689999999999999999999999999999999988875 477788889999999999999999999999999999999
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCC
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
+||... ......+..|...+.....+..|+.++|+|.|+...
T Consensus 85 v~d~~~-----~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 126 (170)
T d1r2qa_ 85 VYDITN-----EESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp EEETTC-----HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred Eeccch-----hhHHHHHHHHhhhhhhccCCCceEEeeccccccccc
Confidence 998332 222234455655565667788999999999998543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=3.4e-07 Score=72.34 Aligned_cols=119 Identities=24% Similarity=0.404 Sum_probs=98.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccc-cCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDR-LRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~-l~~~~~~~~~~~i 139 (330)
+.+||+++|++|||||||++||..++|...+.++.+..+ .....+.+....+.+||++|.+.+.. .++.||+++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 358999999999999999999999999999999998777 45888899999999999999877654 4678999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeec-cCCCcccccccceeeccC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+|||.. .......+..|+..+.. ...+..|+.++|+|.|+.
T Consensus 81 lv~d~~-----~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~ 122 (165)
T d1z06a1 81 FVYDMT-----NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122 (165)
T ss_dssp EEEETT-----CHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEee-----hhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch
Confidence 999832 22333456667776655 345678899999999984
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.12 E-value=1.7e-06 Score=75.24 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=28.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTV 96 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~ 96 (330)
...|||-+||.++||||||.+++++... ..+|+-|+
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftT 45 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT 45 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccC
Confidence 3568999999999999999999997643 45665554
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=5e-07 Score=71.74 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=83.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|.+..+. .+.++.+..+.+.+.+++..+.+.+||++|+++++.++..||+++|++++|||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d 80 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence 69999999999999999999988754 45677788888899999999999999999999999999999999999999998
Q ss_pred cccchhhhcccccccCCcceeeec-cCCCcccccccceeeccCC
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
.+. ......+..|...+.. ......|+.++|||.|+..
T Consensus 81 ~t~-----~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 119 (168)
T d2gjsa1 81 VTD-----KGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119 (168)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG
T ss_pred ccc-----cccccccccccchhhcccccccceEEEeecccchhh
Confidence 432 2223345567666554 3456778999999999853
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.99 E-value=3e-06 Score=72.96 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=23.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC-CCCCCCce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTV 96 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~ 96 (330)
+||-+||-++||||||.+++++.+- ...|+-|.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~t 36 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCT 36 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCC
Confidence 6899999999999999999997653 23444333
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=3.1e-06 Score=67.88 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.+||+++|++|||||||+++++...
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 5899999999999999999998654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=9.7e-07 Score=70.10 Aligned_cols=119 Identities=24% Similarity=0.396 Sum_probs=86.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCC-CCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY-VPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~-~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|+++||||||++||.+++|.+.+ .++++..+. ..+..++..+.+.+|||+|++++..++..+++++|++++
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~ 85 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence 589999999999999999999999986554 555566654 478899999999999999999999999999999999999
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|||.... .....+..|.........+..++.++|++.+...
T Consensus 86 v~d~~~~-----~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~ 126 (170)
T d2g6ba1 86 LYDVTNK-----ASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126 (170)
T ss_dssp EEETTCH-----HHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred EecCCcc-----cchhhhhhhhhhhhhccCCCceEEEEEeeechhh
Confidence 9984422 1223445555555555566777888888888753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=5.6e-07 Score=72.61 Aligned_cols=119 Identities=27% Similarity=0.390 Sum_probs=94.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECC----------ceeeeeeeecCCCccccccCCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGG----------EPYTLGLFDTAGQEDYDRLRPLS 131 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~----------~~~~l~i~Dt~g~~~~~~l~~~~ 131 (330)
.+||+++|++|||||||++||.+++|...+.++.+..+. ..+..++ ..+.+.+|||+|++.|+.++..|
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 489999999999999999999999999999999887764 3554433 45789999999999999999999
Q ss_pred CCCCceEEEEeccccchhhhcccccccCCcceeeecc-CCCcccccccceeeccCC
Q psy9997 132 YPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 132 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+++++++++|||.. .......+..|...+..+ ..+..++.++|+|.|+..
T Consensus 85 ~~~~~~~i~v~d~~-----~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 135 (186)
T d2f7sa1 85 FRDAMGFLLMFDLT-----SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 135 (186)
T ss_dssp HTTCCEEEEEEETT-----CHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred HhcCCEEEEEEecc-----ccccceeeeeccchhhhhccCCCceEEEEeeeccchh
Confidence 99999999999832 222334455666655543 456677889999999843
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=3.5e-07 Score=75.00 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPS 30 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~ 30 (330)
.|+++|++|||||||+++++.+.+.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~~~ 30 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSVRP 30 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 78999999999999999999987653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.90 E-value=4.6e-06 Score=72.38 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=42.6
Q ss_pred ccccccccccccccc-------------cccCccccCCCE-EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEec
Q psy9997 190 RDRSLFDTAGQEDYD-------------RLRPLSYPQTDV-FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~-------------~~~~~~~~~~d~-~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK 255 (330)
..+.++|+||-.... .+...|+...+. ++++.+.+...+-.... .+.+.+... ..++++|.||
T Consensus 125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~-~~~~~~~~~--~~r~i~Vltk 201 (299)
T d2akab1 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KIAKEVDPQ--GQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HHHHHHCTT--CSSEEEEEEC
T ss_pred CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH-HHHHHhCcC--CCceeeEEec
Confidence 356788998875432 222334455664 55566666555554444 455544332 4689999999
Q ss_pred cCCCCCc
Q psy9997 256 IDLREDA 262 (330)
Q Consensus 256 ~Dl~~~~ 262 (330)
+|...+.
T Consensus 202 ~D~~~~~ 208 (299)
T d2akab1 202 LDLMDEG 208 (299)
T ss_dssp GGGSCTT
T ss_pred cccccch
Confidence 9998753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=1.5e-06 Score=69.14 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=86.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCC-CCCCcee-ecceEEEEECCceeeeeeeecC---CCccccccCCCCCCCCce
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVF-DNYAVTVMIGGEPYTLGLFDTA---GQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~---g~~~~~~l~~~~~~~~~~ 137 (330)
-+||+++|++|||||||++||.+..+.. .+.+|.+ +.+...+.+++..+.+.+||++ |+++| ++..||+++|+
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~ 80 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence 4799999999999999999999887643 3445554 4556788999999999988865 56655 56789999999
Q ss_pred EEEEeccccchhhhcccccccCCcceeeec-cCCCcccccccceeeccCC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+++|||.+. ......+..|...+.. ...+..|+.++|+|.|+..
T Consensus 81 ~ilvfd~t~-----~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 125 (172)
T d2g3ya1 81 YLIVYSITD-----RASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 125 (172)
T ss_dssp EEEEEETTC-----HHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred eeeeecccc-----cchhhhhhhhhhhhhhccccCCceEEEEeccccccc
Confidence 999998432 2222344556555544 3456788999999999854
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.78 E-value=1.1e-06 Score=71.31 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=69.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+.+||+++|+.|||||||++||..+.| .+.||+|. ....++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~-------------~~~~~~------------------------ 41 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGI-------------IEYPFD------------------------ 41 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSC-------------EEEEEE------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeE-------------EEEEEe------------------------
Confidence 468999999999999999999998877 35677531 010011
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.......+||++|++.+...+..+++.+++++++|
T Consensus 42 ---------------------------------------------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 76 (200)
T d2bcjq2 42 ---------------------------------------------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 76 (200)
T ss_dssp ---------------------------------------------CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred ---------------------------------------------ccceeeeeccccccccccccccccccccceeeEee
Confidence 12345678999999999999999999999999999
Q ss_pred EcCChhhHhhhh
Q psy9997 222 SVVSPSSFENVK 233 (330)
Q Consensus 222 d~~~~~s~~~~~ 233 (330)
|.++..++....
T Consensus 77 ~~~~~~~~~~~~ 88 (200)
T d2bcjq2 77 ALSEYDQVLVES 88 (200)
T ss_dssp EGGGGGCBCSSC
T ss_pred eccchhhhhhhh
Confidence 999888766554
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=1.1e-05 Score=62.81 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=37.4
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+||+++|+++||||||+++++.... ......+............+. .+.+||+++
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Dt~G 57 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAG 57 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCe--eEEeccccc
Confidence 6999999999999999999986542 233333333334445555554 456787776
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.64 E-value=0.00015 Score=62.73 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
+|+++|+.++|||||++.++...+.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~l 50 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFL 50 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999999987763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.61 E-value=1.4e-05 Score=70.01 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF 88 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~ 88 (330)
|||.++|.+|||||||+|++++.+-
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCC
Confidence 6899999999999999999998753
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.53 E-value=6.5e-05 Score=64.12 Aligned_cols=85 Identities=11% Similarity=0.144 Sum_probs=58.2
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
.++.+|.++.|.|+-+|.+..+-. +.+...+.|.|+|.||+|+... ....+.. ++.+..+
T Consensus 12 ~i~~~DvIl~V~DaR~P~ss~~~~------l~~~~~~Kp~IlVlNK~DLv~~-------------~~~~~w~-~~f~~~~ 71 (273)
T d1puja_ 12 KLKLIDIVYELVDARIPMSSRNPM------IEDILKNKPRIMLLNKADKADA-------------AVTQQWK-EHFENQG 71 (273)
T ss_dssp HGGGCSEEEEEEETTSTTTTSCHH------HHHHCSSSCEEEEEECGGGSCH-------------HHHHHHH-HHHHTTT
T ss_pred HHHhCCEEEEEEECCCCCCCCCHH------HHHHHcCCCeEEEEECccCCch-------------HHHHHHH-HHHHhcC
Confidence 477899999999999888766532 2223347899999999999753 1222222 2223333
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
...+.+||+++.+..++...+...+
T Consensus 72 -~~~i~isa~~~~~~~~~~~~~~~~l 96 (273)
T d1puja_ 72 -IRSLSINSVNGQGLNQIVPASKEIL 96 (273)
T ss_dssp -CCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred -CccceeecccCCCccccchhhhhhh
Confidence 5789999999999877766554443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.51 E-value=6.9e-05 Score=61.69 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=58.8
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL- 288 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 288 (330)
...+.|.+++|..+.+|..-....+.|+-.... .++|.++|.||+||..+. ..+....+.+.+
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~--------------~~~~~~~~~~~~~ 70 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDED--------------DLRKVRELEEIYS 70 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHH--------------HHHHHHHHHHHHT
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHH--------------HHHHHHHhhcccc
Confidence 356889999999988775433322255544443 489999999999997531 122333344432
Q ss_pred CCeeEEEEeeccCCCHHHHHHHH
Q psy9997 289 KAVKYVECSALTQKGLKNVFDEA 311 (330)
Q Consensus 289 ~~~~~~e~Sa~~~~~v~~~f~~l 311 (330)
...+++.+||+++.|++++...+
T Consensus 71 ~~~~v~~vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 71 GLYPIVKTSAKTGMGIEELKEYL 93 (225)
T ss_dssp TTSCEEECCTTTCTTHHHHHHHH
T ss_pred cceeEEEeccccchhHhhHHHHh
Confidence 22578999999999999988754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.49 E-value=3.8e-05 Score=60.98 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=33.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.|.++|.++||||||+++++.........+..................+.+||+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG 58 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG 58 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCe
Confidence 48999999999999999997654322211111111122233344444567888876
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=6e-05 Score=59.25 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
.|+++|.+|||||||+++++....
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999986543
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.28 E-value=9e-06 Score=65.25 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=83.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+++||+++|+.|||||||++||....|+..+ ..+..++.....+++||++|+++|+++++.||+++++++++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~--------~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v 72 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG--------IVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC 72 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS--------EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcc--------EEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence 4789999999999999999999887764332 23455667788999999999999999999999999999999
Q ss_pred eccccchh--hhcccc----cccCCcceeeeccCCCcccccccceeecc
Q psy9997 142 FGNMMNIR--RSVDWN----RKLGGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 142 ~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
|+.....+ ....+. .....|...+........|+.++|++.|+
T Consensus 73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~ 121 (195)
T d1svsa1 73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 121 (195)
T ss_dssp EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchh
Confidence 97432211 111111 11122333344455667788888998876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.20 E-value=5.3e-05 Score=62.60 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=56.9
Q ss_pred ccCCCEEEEEEEcCChhh-HhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH---H
Q psy9997 211 YPQTDVFLVCFSVVSPSS-FENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA---K 286 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s-~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---~ 286 (330)
..+.|.+++|.++.+|.. ...+. .++-.... .++|.++|.||+||..+.. ..+....+. .
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~id-R~Lv~a~~--~~i~pvIvlnK~DL~~~~~-------------~~~~~~~~~~~y~ 71 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLD-RFLVLVEA--NDIQPIICITKMDLIEDQD-------------TEDTIQAYAEDYR 71 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHH-HHHHHHHT--TTCEEEEEEECGGGCCCHH-------------HHHHHHHHHHHHH
T ss_pred ccccCEEEEEEECCCCCCCHHHHH-HHHHHHHH--cCCCEEEEEecccccccHH-------------HHHHHHHHHHHHh
Confidence 468899999999987753 33343 45544333 5899999999999976421 122233333 3
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHH
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDE 310 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~ 310 (330)
..| .+++.+||+++.|++++...
T Consensus 72 ~~g-~~v~~~Sa~~~~gl~~L~~~ 94 (231)
T d1t9ha2 72 NIG-YDVYLTSSKDQDSLADIIPH 94 (231)
T ss_dssp HHT-CCEEECCHHHHTTCTTTGGG
T ss_pred hcc-ccceeeecCChhHHHHHHHh
Confidence 445 78999999999999887654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.09 E-value=5.4e-05 Score=64.64 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=34.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
..++++|+|.+|||||||+|++.+.+-... .++-|..- ...+..+ -.+.+.||||.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~-~~~pG~Tr~~~~i~~~---~~~~l~DTPGi 167 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVG---KELELLDTPGI 167 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCC
T ss_pred CceEEEEEecCccchhhhhhhhhccceEEE-CCcccccccceEEECC---CCeEEecCCCc
Confidence 568999999999999999999998653111 11111111 1122222 24788999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.96 E-value=0.0012 Score=55.35 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=38.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCC-CCCC-CCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNK-FPSE-YVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~-f~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+++|+|+|.+|||||||++.++... |..+ ..++.-.........++.. +.++||++
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~--i~viDTPG 89 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPG 89 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE--EEEEECCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEE--EEEEeeec
Confidence 46899999999999999999998654 3322 2233333334455566654 56777776
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=9.2e-05 Score=60.94 Aligned_cols=58 Identities=17% Similarity=0.050 Sum_probs=33.2
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCC--CCc--eeecc---eEEEEECCceeeeeeeecCCCcccc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEY--VPT--VFDNY---AVTVMIGGEPYTLGLFDTAGQEDYD 125 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~--~~t--~~~~~---~~~~~~~~~~~~l~i~Dt~g~~~~~ 125 (330)
..+++|.+|||||||+|++.+..-...- ... .|-.. ..-+.+++. -.++||||.+.+.
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~ 161 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE 161 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence 4689999999999999999875422111 000 12111 113333322 3678999985544
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.80 E-value=0.00026 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+|.++|.++||||||++++....
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997544
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0012 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.|+++|.+|||||||+++++...
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00027 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
.+||+++|.++||||||++++....+
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 58999999999999999999977654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.34 E-value=0.00094 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+||+++|.+|+|||+|+..++..
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 58999999999999999988753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.31 E-value=0.00016 Score=59.68 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
..+++|++|||||||+|++.++.
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred eEEEECCCCccHHHHHHhhccHh
Confidence 46799999999999999999863
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.30 E-value=0.0009 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+|+++|.+|||||||++++++..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 89999999999999999998754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.22 E-value=0.0014 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
.|+++|.+|||||||++++.....
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~ 25 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV 25 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.03 E-value=0.0017 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|--.||++.|.+|+||||+.+++...
T Consensus 2 m~~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 2 MLLPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 55679999999999999999988754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.02 E-value=0.002 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+.+ |++.|.+|+|||+++.++...
T Consensus 1 Mkkl-Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 1 MKKI-ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp CCEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence 6776 889999999999999998653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=95.99 E-value=0.00026 Score=55.56 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.8
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
|||+++|++|+|||||++.+.+.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 68999999999999999988763
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.91 E-value=0.0022 Score=50.45 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.4
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
..+.++|++|...+...+......+|+++++++..
T Consensus 59 ~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~ 93 (179)
T d1wb1a4 59 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAK 93 (179)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETT
T ss_pred ccccccccccccccccchhhhhhhccccccccccc
Confidence 45678999999888887888889999999999744
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.0034 Score=56.04 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=51.1
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH----H----
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG----E---- 282 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~---- 282 (330)
+..+|.++++.|.. -+-.+. .+...+.+. +.|+++|.||+|....... ....+....+.. +
T Consensus 133 ~~~~d~~l~~~~~~--~~~~d~--~l~~~l~~~--~k~~~~V~nK~D~~~~~~~-----~~~~~~~~~e~~l~~ir~~~~ 201 (400)
T d1tq4a_ 133 FYEYDFFIIISATR--FKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEA-----DGEPQTFDKEKVLQDIRLNCV 201 (400)
T ss_dssp GGGCSEEEEEESSC--CCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHH-----TTCCTTCCHHHHHHHHHHHHH
T ss_pred hhcceEEEEecCCC--CCHHHH--HHHHHHHHc--CCCEEEEEeCcccccchhh-----hcccccccHHHHHHHHHHHHH
Confidence 44578777776532 222222 345555553 7899999999997532211 111122222221 1
Q ss_pred HHHHHhC--CeeEEEEeecc--CCCHHHHHHHHHHHhc
Q psy9997 283 KLAKELK--AVKYVECSALT--QKGLKNVFDEAILAAL 316 (330)
Q Consensus 283 ~~~~~~~--~~~~~e~Sa~~--~~~v~~~f~~l~~~i~ 316 (330)
...+..+ ..++|.+|+.+ ..+++++.+.+.+.+-
T Consensus 202 ~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~ 239 (400)
T d1tq4a_ 202 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 239 (400)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence 1112212 23578888764 3589999888776654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.76 E-value=0.00046 Score=56.59 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=83.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
..||+++|++|||||||++||..+.+ .||+|.... .+.+ ..+.+++||++|++.++..+..||+++++++.++
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~-~~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~ 78 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFET-KFQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 78 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEE-EEEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEE-EEEE--CcEEEEEEecCccceeccchhhhcccccceEEEE
Confidence 47999999999999999999987654 588884432 3334 4578999999999999999999999999999999
Q ss_pred ccccchh--hhcccccc----cCCcceeeeccCCCcccccccceeeccCC
Q psy9997 143 GNMMNIR--RSVDWNRK----LGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 143 ~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+.+.... ....|... ...|-..+........|+.++|||.|+..
T Consensus 79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~ 128 (221)
T d1azta2 79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 128 (221)
T ss_dssp ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred EccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence 7553221 01111111 11122223334446789999999999843
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.70 E-value=0.003 Score=48.71 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+.++|++.|.+||||||+...+...
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888764
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.64 E-value=0.0024 Score=49.65 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+|++.|.+|||||||+.++...
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998863
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0034 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.+++||++|||||+++..++..-
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 58999999999999998877543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.49 E-value=0.0038 Score=47.85 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+.+ |++.|.+|+||||++.++...
T Consensus 1 M~kl-I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 1 MKKL-YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp CEEE-EEEECSTTSSHHHHHHHHHHH
T ss_pred CCeE-EEEECCCCCCHHHHHHHHHHH
Confidence 5544 889999999999999998753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.42 E-value=0.00051 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
|.-+||+++|++||||||+++++...
T Consensus 2 m~~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 2 MLLPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999888653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0045 Score=47.39 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|-++ +.+.|.+|+|||||+.+++..
T Consensus 1 m~Pv-i~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 1 MIPL-LAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCCE-EEEECCTTSCHHHHHHHHHHH
T ss_pred CCCE-EEEEcCCCCCHHHHHHHHHHH
Confidence 4455 789999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.36 E-value=0.0045 Score=48.83 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+.+||+++|.+|+|||++..+++.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0043 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
.+++||++|||||+++..+...-.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999999988775433
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.17 E-value=0.00073 Score=52.79 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.3
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
=+|++.|++|+|||||+++|...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.02 E-value=0.0064 Score=47.53 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
++||+++|.+|+|||++...++..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999998763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.01 E-value=0.014 Score=47.45 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=45.9
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
....+.++||||.+.|...+....+.+|++++|.|.......- ... .+........|+.++-||.|+..
T Consensus 68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~------~~~---~~~~~~~~~~p~iivlNK~D~~~ 136 (227)
T d1g7sa4 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQ------TQE---ALNILRMYRTPFVVAANKIDRIH 136 (227)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHH------HHH---HHHHHHHTTCCEEEEEECGGGST
T ss_pred cccccccccccceecccccchhcccccceEEEEEecccCcccc------hhH---HHHHhhcCCCeEEEEEECccCCC
Confidence 3446788999999999999999999999999999854321110 000 01112224556777788888754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.99 E-value=0.0057 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+|+++|.+|||||++...+...
T Consensus 3 ~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999998887653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.95 E-value=0.0067 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+||+++|.+|+|||++...++..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999887653
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0062 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|+++|.+||||||+.+.+...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0074 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+.. |+++|.+||||++|+.+++.
T Consensus 2 m~k~-ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 2 MRKT-LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred CCCc-EEEECCCCCCHHHHHHHHHH
Confidence 4444 88999999999999999875
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.83 E-value=0.0012 Score=52.61 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccC
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
++.+.+||+++|++||||||+..++...
T Consensus 2 ~~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 2 ASARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CSSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998888764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.80 E-value=0.0082 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+.++|.+-|.+|+||||+..++...
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999999988753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.75 E-value=0.0081 Score=46.94 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+||+++|.+|+|||++..+++..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999888864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.72 E-value=0.0074 Score=47.51 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.+++|+++|.+|+|||++..++...
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999887654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.72 E-value=0.0015 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=20.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++ |++.|.+|+||||+++++...
T Consensus 1 Mkkl-Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 1 MKKI-ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp CCEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence 3444 778999999999999888653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.68 E-value=0.0088 Score=46.63 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
++|+++|.+|+|||++..++...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.64 E-value=0.0095 Score=47.09 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++|+++|.+|+|||++..+++..
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999998864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.62 E-value=0.0086 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.4
Q ss_pred eeEE-EEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCV-VVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~-~lGd~~vGKtsl~~~~~~~ 26 (330)
+||+ ++|-+|+|||+|+.+++..
T Consensus 1 Mkii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 1 MNVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3565 9999999999999998753
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.0085 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHhCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~ 27 (330)
|++.|.+|+|||+|+..++...
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999988543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.50 E-value=0.0015 Score=50.56 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+.++|++.|++||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 35689999999999999999888653
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.0096 Score=46.85 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+|+|.+|||||+|+.+++..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999998764
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.42 E-value=0.0016 Score=51.07 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.4
Q ss_pred EeEEEeecCCCceeEEEEeecc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
|||+++|++|+||||++..+..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999877754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.011 Score=46.06 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+||+++|.+|+|||++..++...
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999888753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.30 E-value=0.0023 Score=49.14 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.5
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|++.|++||||||++++|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999888653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.09 E-value=0.002 Score=50.55 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.3
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
|||+++|++||||||++.++...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999887653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.08 E-value=0.002 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.2
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
|||+++|++||||||++.+|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999998877654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.06 E-value=0.013 Score=46.22 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+|+|.+|||||+|+.+++..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999887653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.04 E-value=0.0019 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.6
Q ss_pred eeEeEEEeecCCCceeEEEEeecc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
.+++|+++|++|+||||++..+..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999977754
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.97 E-value=0.014 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-|+++|.+|+|||++..+++..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34799999999999999998763
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.014 Score=46.80 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
++++|.+|||||+|+.+++..
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 688999999999999998864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.89 E-value=0.015 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=18.2
Q ss_pred eeEEE-EcCCCCChhHHHHHHHh
Q psy9997 4 IKCVV-VGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~-lGd~~vGKtsl~~~~~~ 25 (330)
+|+++ .|.+||||||++..+..
T Consensus 1 mkiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47765 59999999999988764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.88 E-value=0.015 Score=45.41 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+++|.+|+|||+++..+...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999888754
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.86 E-value=0.011 Score=52.34 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhHHHHHHH
Q psy9997 6 CVVVGDGAVGKTCLLISYT 24 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~ 24 (330)
+++||++|||||+++..++
T Consensus 46 ~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CEEEECTTSCHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHH
Confidence 7899999999999985544
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.0025 Score=49.89 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.6
Q ss_pred EeEEEeecCCCceeEEEEeecc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
|||+++|++||||||.+.++..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999877764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.85 E-value=0.014 Score=48.22 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|.+|+|||+|+.+++..
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 678899999999999998753
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.026 Score=46.33 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=26.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
++.++|.+|+|||+|+..++. . +.|+ .-.+.+++.++
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~g-l----~~p~-----~G~I~i~g~~i 67 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQR-F----YIPE-----NGQVLIDGHDL 67 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTT-S----SCCS-----EEEEEETTEET
T ss_pred EEEEECCCCCCHHHHHHHHHh-c----CCCC-----CCEEEECCEEe
Confidence 689999999999999887764 2 2232 34566676654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.73 E-value=0.016 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.=|+++|.+|+|||+++.+++.
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.0025 Score=48.91 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=18.4
Q ss_pred EEEeecCCCceeEEEEeecc
Q psy9997 66 CVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~ 85 (330)
+.++|.+|||||||++++..
T Consensus 5 i~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999975
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.67 E-value=0.017 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|+++|.+|+|||++...+...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999888754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.62 E-value=0.0025 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=18.7
Q ss_pred EeE-EEeecCCCceeEEEEeecc
Q psy9997 64 IKC-VVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 64 ~ki-~vvG~~~~GKTsl~~~l~~ 85 (330)
||| .|+|.+|||||||+.++..
T Consensus 1 Mkii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 1 MNVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 455 4999999999999998875
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.02 Score=44.91 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+.+|+++|.+|+|||++..+++.
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.59 E-value=0.034 Score=45.29 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.5
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-+.++|.+|+|||+|+..+..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~g 53 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGC 53 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCcchhhHhccC
Confidence 378999999999999876553
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.0029 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+||+++|++||||||++..+...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999888653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.46 E-value=0.018 Score=46.64 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
|+++|..|+|||||+.+++.
T Consensus 3 i~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHH
Confidence 78999999999999999985
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.012 Score=49.67 Aligned_cols=58 Identities=21% Similarity=0.023 Sum_probs=39.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCC-----CCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSE-----YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.=|.++|+.++|||+|+|++.+..+... ...|.|.-....-..++....+-++||-|.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 95 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence 4578999999999999999998764222 223445433222223556667788899887
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.037 Score=45.67 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=26.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
++.++|.+|+|||||+.-++. . +.|+ .-.+.+++.++
T Consensus 42 ~vaivG~sGsGKSTLl~li~g-l----~~p~-----~G~I~i~g~~i 78 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQN-L----YQPT-----GGQLLLDGKPL 78 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTT-S----SCCS-----EEEEEETTEEG
T ss_pred EEEEECCCCCcHHHHHHHHhc-c----cCCC-----cCEEEECCEec
Confidence 689999999999999987754 2 2333 34566676654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.25 E-value=0.0034 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred eEeEEEeecCCCceeEEEEeecc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
.+||+++|++||||||.+.++..
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999987764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.023 Score=43.31 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|.+|+||||+...+...
T Consensus 9 ivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999998764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.0038 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++|++|+||+||++++...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999998853
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.15 E-value=0.048 Score=44.58 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=26.0
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
-++++|.+|+|||+|+..+..-. .|+ .-.+.+++.++
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~-----~p~-----~G~I~~~G~~i 62 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV-----KPD-----RGEVRLNGADI 62 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS-----CCS-----EEEEEETTEEC
T ss_pred EEEEECCCCChHHHHHHHHHcCC-----CCC-----ceEEEECCEEC
Confidence 36799999999999998887532 222 44566666554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.13 E-value=0.023 Score=44.88 Aligned_cols=22 Identities=36% Similarity=0.286 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.=|+++|-+|||||++..+++.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999998874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.05 E-value=0.034 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=22.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
+|+++|+.++|||||++.++...+
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998886
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.99 E-value=0.026 Score=43.37 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
|+++|.+|+|||++...+..
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998874
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.95 E-value=0.026 Score=43.11 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+=|.+.|.+|+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999877764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.87 E-value=0.032 Score=44.48 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=30.8
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
....+.++||||.+.|..-+..-.+.+|++++|.|.
T Consensus 65 ~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda 100 (204)
T d2c78a3 65 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA 100 (204)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEET
T ss_pred CCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEEC
Confidence 345678899999999988888888999999999973
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.86 E-value=0.026 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHhCCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f 28 (330)
|+|.|.+|+|||+|+..++....
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 88999999999999999887543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.77 E-value=0.029 Score=42.83 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|++.|.+|+||||+...+...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999998877653
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=92.74 E-value=0.061 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++.++|.+|+|||+|+.-++.
T Consensus 43 ~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999977753
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.065 Score=43.79 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=25.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
-+.++|.+|+|||+|+..+..- . .|+ .-.+.++++++
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl-~----~p~-----sG~I~~~g~~i 69 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL-E----RPT-----EGSVLVDGQEL 69 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS-S----CCS-----EEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHcCC-c----ccc-----CCceEEcCeEe
Confidence 3689999999999998777542 1 233 34566676654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.66 E-value=0.0049 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
|.+++|++-|++||||||...++...
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 67788999999999999998877653
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.0049 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.8
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.|+++|++||||||+.+.+...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998877653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=92.63 E-value=0.083 Score=43.13 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=26.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT 52 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~ 52 (330)
-+.++|.+|+|||+|+..+..-. .|+ .-.+.++++.+.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~-----~p~-----sG~I~~~g~~i~ 68 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE-----EPS-----RGQIYIGDKLVA 68 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-----CCS-----EEEEEETTEEEE
T ss_pred EEEEECCCCChHHHHHHHHhcCC-----CCC-----CCEEEECCEEec
Confidence 47899999999999988776422 233 346677776653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.58 E-value=0.064 Score=43.78 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=25.9
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
-+.++|.+|+|||+|+..+..-. .|+ +-.+.++++++
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~-----~p~-----sG~I~i~g~~i 70 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLE-----EPT-----EGRIYFGDRDV 70 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS-----CCS-----EEEEEETTEEC
T ss_pred EEEEECCCCChHHHHHHHHHcCC-----CCC-----CCEEEEcceec
Confidence 47899999999999998776532 233 33556666654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.55 E-value=0.04 Score=45.60 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=25.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
+++++|.+|+|||||+.-+.. . +.|+ .-.+.+++.++
T Consensus 46 ~vaivG~sGsGKSTLl~ll~g-l----~~p~-----~G~I~i~g~~i 82 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPR-F----YDVT-----SGQILIDGHNI 82 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTT-S----SCCS-----EEEEEETTEEG
T ss_pred EEEEECCCCCcHHHHHHHHHh-c----CCcc-----ccccccCCEEc
Confidence 789999999999999865543 2 2333 34566666654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.47 E-value=0.033 Score=42.76 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
|++.|.+|+||||++.++..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56779999999999988764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.32 E-value=0.034 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
-+++.|.+|+|||+++..++...
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999988643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.32 E-value=0.0054 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++|++|||||||++++...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.25 E-value=0.036 Score=43.53 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+++|.+|+|||++..+++..
T Consensus 11 I~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998763
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.23 E-value=0.0094 Score=50.82 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=41.2
Q ss_pred ccccccccccccccc-------------cccCccccCCCEEEEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEec
Q psy9997 190 RDRSLFDTAGQEDYD-------------RLRPLSYPQTDVFLVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~-------------~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK 255 (330)
..+.++|+||-.... .+...|+.+++.+++++.... ...-+... .+...+.. ...++++|.||
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~-~~~~~~~~--~~~r~i~Vitk 207 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITK 207 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEEC
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHH-HHHHHhCc--CCCeEEEEEec
Confidence 356789999975422 334456778888887774332 22212222 34444332 34689999999
Q ss_pred cCCCCCc
Q psy9997 256 IDLREDA 262 (330)
Q Consensus 256 ~Dl~~~~ 262 (330)
+|.....
T Consensus 208 ~D~~~~~ 214 (306)
T d1jwyb_ 208 LDLMDKG 214 (306)
T ss_dssp TTSSCSS
T ss_pred cccccch
Confidence 9997653
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.0065 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.0
Q ss_pred eEeEEEeecCCCceeEEEEeecc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+++|+++|++||||||.+.++..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999887765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.10 E-value=0.037 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
-+++.|.+|+|||+++..++....
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999998876543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.04 E-value=0.0082 Score=47.35 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.7
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
..|+++|++|+||||++.++...
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999888653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.95 E-value=0.12 Score=43.37 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=26.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC--CCCCCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPT 35 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~--f~~~~~~t 35 (330)
.+||-+||-++||||||.+.++... -..+|+-|
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypft 44 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA 44 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCcc
Confidence 5899999999999999999999653 24556544
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.81 E-value=0.053 Score=42.08 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
=|++.|++|+|||++...+...-+
T Consensus 16 gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHcCC
Confidence 378999999999999999987654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.81 E-value=0.0076 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.3
Q ss_pred eEeEEEeecCCCceeEEEEeecc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
..=|+++|.+||||||++.++..
T Consensus 14 p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999988754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=91.75 E-value=0.051 Score=44.52 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++.++|.+|+|||||+..++.
T Consensus 30 ~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.71 E-value=0.043 Score=45.93 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
|.+.|++|+|||+|+..+..
T Consensus 47 v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 47 LFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.045 Score=44.53 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=17.9
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-+.++|.+|+|||+|++.+..
T Consensus 28 i~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 378999999999999887654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.56 E-value=0.0088 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=17.8
Q ss_pred EeEE-EeecCCCceeEEEEeecc
Q psy9997 64 IKCV-VVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 64 ~ki~-vvG~~~~GKTsl~~~l~~ 85 (330)
|||+ +.|.+||||||+++.+..
T Consensus 1 mkiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 4665 469999999999988753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.55 E-value=0.046 Score=44.22 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|.+|+|||+++..++..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 899999999999999988864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.0073 Score=46.63 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.2
Q ss_pred EEEeecCCCceeEEEEeecc
Q psy9997 66 CVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~ 85 (330)
|++.|++|+|||+|+.++..
T Consensus 4 v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998875
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.40 E-value=0.0079 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.2
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++|++|+|||||++++...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999888654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.39 E-value=0.008 Score=47.78 Aligned_cols=21 Identities=38% Similarity=0.309 Sum_probs=18.6
Q ss_pred eEEEeecCCCceeEEEEeecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~ 85 (330)
=|+++|.+||||||+.+++..
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.39 E-value=0.0079 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=18.0
Q ss_pred eEEEeecCCCceeEEEEeecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~ 85 (330)
||+++|.+||||||+.+.+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999998776643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.33 E-value=0.05 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHHhCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~ 27 (330)
++++|.+|||||.|...++...
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhcc
Confidence 8999999999999999988643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=91.31 E-value=0.071 Score=43.20 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=26.0
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
+.++|.+|+|||+|++.+..-. .|+ .-++.++++++
T Consensus 29 ~~liGpsGaGKSTll~~l~Gl~-----~p~-----sG~I~~~G~~i 64 (229)
T d3d31a2 29 FVILGPTGAGKTLFLELIAGFH-----VPD-----SGRILLDGKDV 64 (229)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS-----CCS-----EEEEEETTEEC
T ss_pred EEEECCCCCcHHHHHHHHhcCc-----CCC-----CCEEEEccEec
Confidence 7899999999999998887532 222 34566676654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=0.0083 Score=47.47 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++|++|||||||++++...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999888653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.24 E-value=0.055 Score=42.97 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-+.++|..|+|||+|+..++.
T Consensus 29 i~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 367999999999999988865
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.18 E-value=0.053 Score=42.45 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+++|.+|+|||++..+++..
T Consensus 11 I~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 11 IFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998763
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.17 E-value=0.058 Score=45.25 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++.++|.+|+|||+|+..++.
T Consensus 64 ~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.06 E-value=0.064 Score=41.62 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEcCCCCChhHHHHHHHhCCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f 28 (330)
|++.|++|+|||++...+...-+
T Consensus 18 vli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTTTC
T ss_pred EEEEcCCCCCHHHHHHHHHHcCC
Confidence 78999999999999999987554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.04 E-value=0.079 Score=43.27 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=27.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT 52 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~ 52 (330)
-+.++|.+|+|||+|++.+..- ..|+ .-.+.++++++.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl-----~~p~-----~G~I~~~g~~i~ 70 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGL-----DVPS-----TGELYFDDRLVA 70 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS-----SCCS-----EEEEEETTEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHcC-----cCCC-----CceEEECCEEee
Confidence 4789999999999999887752 2233 345677777654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.02 E-value=0.058 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+++.|.+|+|||+++..++...
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7999999999999999988644
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.011 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
+++++|++|+|||||++-+.+-
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999887764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.98 E-value=0.054 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+||.++|-++||||||++.++..
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCC
Confidence 58999999999999999999854
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.97 E-value=0.069 Score=41.14 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=21.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
=|++.|++|+|||++...++..-+
T Consensus 17 gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHcCC
Confidence 479999999999999999887754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.95 E-value=0.011 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.++++|++|+|||||++.+.+-.
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhccc
Confidence 47799999999999999887643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.95 E-value=0.057 Score=43.95 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
-+++.|++|+|||+++..++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.037 Score=43.00 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+-|++.|.+|+||||+...+...
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345778999999999999888753
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.91 E-value=0.069 Score=41.91 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=29.1
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
...+.++||||.+.|...+..-.+.+|+++++.+
T Consensus 77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvd 110 (195)
T d1kk1a3 77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIA 110 (195)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEE
T ss_pred ceeEeeeccchhhhhhHHhhcccccccccccccc
Confidence 3467889999999998888777889999999887
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.88 E-value=0.072 Score=43.67 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-|++.|.+|+|||+++..++..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 35999999999999999998863
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.85 E-value=0.055 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHHhCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+++.|++|+|||+|..+|+.+.
T Consensus 39 ~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 39 TEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.0098 Score=47.74 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.7
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
++++|++|||||||++++...
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.77 E-value=0.049 Score=44.31 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
.+++.|++|+|||+++..++...+
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc
Confidence 479999999999999999987644
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.63 E-value=0.012 Score=45.06 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.0
Q ss_pred EEEeecCCCceeEEEEeecc
Q psy9997 66 CVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~ 85 (330)
|++.|++|+||||+.+.+..
T Consensus 7 I~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999877754
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.62 E-value=0.037 Score=45.61 Aligned_cols=20 Identities=25% Similarity=0.229 Sum_probs=16.9
Q ss_pred EEEcCCCCChhHHHHHHHhC
Q psy9997 7 VVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 7 ~~lGd~~vGKtsl~~~~~~~ 26 (330)
++.|++|+|||++++.++..
T Consensus 50 ~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHH
Confidence 34599999999999998864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=90.60 E-value=0.014 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.2
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
+++++|++|+|||||++-+.+-
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 5999999999999999877653
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.069 Score=41.80 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHhCCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f 28 (330)
+++.|++|+|||+|+.+++.+..
T Consensus 26 ~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 26 TEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999987543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.43 E-value=0.012 Score=45.45 Aligned_cols=20 Identities=30% Similarity=0.177 Sum_probs=17.3
Q ss_pred EEEeecCCCceeEEEEeecc
Q psy9997 66 CVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~ 85 (330)
|++.|.+||||||+++++..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999988753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.36 E-value=0.064 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHHhCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+++.|++|+|||+|+.+|+.+.
T Consensus 37 ~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 37 TELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp EEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5788999999999999998654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=90.33 E-value=0.014 Score=48.07 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.2
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
+++++|++|+|||||++-+.+-
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999877654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.32 E-value=0.13 Score=42.78 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.+||=+||-++||||||.+.+....
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCC
Confidence 4799999999999999999998654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.27 E-value=0.094 Score=39.62 Aligned_cols=22 Identities=14% Similarity=0.440 Sum_probs=18.0
Q ss_pred eEEEE-cCCCCChhHHHHHHHhC
Q psy9997 5 KCVVV-GDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~l-Gd~~vGKtsl~~~~~~~ 26 (330)
||++| |.+|+|||++...+...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45555 99999999999998764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.25 E-value=0.012 Score=45.10 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.3
Q ss_pred EEEeecCCCceeEEEEeecc
Q psy9997 66 CVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~ 85 (330)
++++|.+|+||||+.+.+..
T Consensus 9 ivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988765
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.10 E-value=0.012 Score=45.15 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.0
Q ss_pred eEEEeecCCCceeEEEEeecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+|+++|.+|+||||+.+.+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999877754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.015 Score=48.15 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.2
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
+++++|++|+|||||++-+.+-
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 5899999999999999877654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=89.92 E-value=0.018 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.4
Q ss_pred eEEEeecCCCceeEEEEeecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+++++|++|+|||||++-+.+
T Consensus 46 ~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999876655
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.017 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.2
Q ss_pred eeEeEEEeecCCCceeEEEEeecc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+-++|.+.|++|+|||||++++..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 357889999999999999999974
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.91 E-value=0.016 Score=48.79 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeeccC
Q psy9997 47 GGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
++.++--++.++-...+ .++++|++|+|||||++.+.+-
T Consensus 47 ~g~pvL~~isl~i~~Ge-~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGE-MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp TTCEEEEEEEEEECTTC-EEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEeCeEEEEcCCC-EEEEECCCCChHHHHHHHHhCC
Confidence 45555434433322222 4899999999999999888764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.83 E-value=0.015 Score=47.45 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.6
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 3789999999999999866654
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=89.80 E-value=0.16 Score=41.83 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=26.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT 52 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~ 52 (330)
-+.++|.+|+|||+|+..... .. .|+ .-.+.++++.+.
T Consensus 30 i~~iiG~sGsGKSTLl~~i~G-l~----~p~-----~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINF-LE----KPS-----EGAIIVNGQNIN 67 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTT-SS----CCS-----EEEEEETTEECC
T ss_pred EEEEECCCCCcHHHHHHHHHc-Cc----cCC-----CCCEEECCEEec
Confidence 478999999999999987763 22 232 346667777653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.77 E-value=0.015 Score=47.76 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
-++++|++|+|||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 45789999999999998887753
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.74 E-value=0.015 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.9
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-+.++|++|+|||||++.+.+-
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 3789999999999999877664
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.71 E-value=0.015 Score=48.06 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.8
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
-|++.|++|+|||+|+..+.++.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999887654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.70 E-value=0.087 Score=43.20 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|.+|+|||+++..+.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHH
Confidence 3899999999999999999964
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.68 E-value=0.085 Score=42.20 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.+++.|++|+|||+++..++...
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHh
Confidence 37899999999999999998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.016 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.6
Q ss_pred eEeEEEeecCCCceeEEEEeecc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+-+++++|++|||||+++..+..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHH
Confidence 34688999999999999987765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.014 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.9
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-|+++|++||||||++.++...
T Consensus 10 iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999888653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.61 E-value=0.089 Score=42.09 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.+++-|.+|+|||+++..++..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHHH
Confidence 3789999999999999888754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.53 E-value=0.064 Score=45.92 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-|+++|++|+|||.+++++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 489999999999999999874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.38 E-value=0.073 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|++|+|||.|+.+++.+
T Consensus 29 ~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 29 ILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 678999999999999999876
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.34 E-value=0.36 Score=36.40 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=21.0
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPS 30 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~ 30 (330)
|++-||=|+|||++++.++...-..
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred EEEecCCCccHHHHHHHHHhhcccc
Confidence 7788999999999999998765433
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=89.28 E-value=0.18 Score=40.97 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=25.7
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
+.++|.+|+|||+|++.+..-. .|+ .-.+.++++++
T Consensus 35 ~~liGpnGaGKSTl~~~i~Gl~-----~p~-----~G~I~~~G~~i 70 (240)
T d1ji0a_ 35 VTLIGANGAGKTTTLSAIAGLV-----RAQ-----KGKIIFNGQDI 70 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS-----CCS-----EEEEEETTEEC
T ss_pred EEEECCCCCcHHHHHHHHhCCC-----CCC-----ccEEEeccccc
Confidence 6899999999999998886532 222 34566666654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.25 E-value=0.097 Score=41.97 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++-|.+|+|||+++..++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.18 E-value=0.091 Score=42.11 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
++|.|++|+|||.|+.+|+.+...
T Consensus 37 ~~i~G~~G~GKT~~~l~~a~~~~~ 60 (258)
T d2i1qa2 37 TEFAGVFGSGKTQIMHQSCVNLQN 60 (258)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh
Confidence 578899999999999999976543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.17 E-value=0.016 Score=44.33 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.2
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|++.|.+|+||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456699999999999887653
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.07 E-value=0.02 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.6
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++||++|||||+++..+...
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999887653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.06 E-value=0.13 Score=40.51 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=30.8
Q ss_pred CceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 108 ~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
.....+.+.||||.+.|..-+..-.+.+|++++|.|.
T Consensus 63 ~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda 99 (196)
T d1d2ea3 63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAA 99 (196)
T ss_dssp CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEET
T ss_pred eceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEc
Confidence 3445678899999998877777778999999999873
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=0.02 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.0
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-+.++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3689999999999999888764
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.94 E-value=0.019 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.4
Q ss_pred EEEeecCCCceeEEEEeeccCC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+.++|++|+|||||++.+.+-.
T Consensus 35 ~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 35 LVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 7899999999999999887653
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=88.90 E-value=0.023 Score=43.38 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=19.2
Q ss_pred eeEeEEEeecCCCceeEEEEeecc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+-+-|.++|.+|+||||+.+.|..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999998877653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.75 E-value=0.14 Score=40.95 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=40.8
Q ss_pred CCEEEEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 214 TDVFLVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
.+-.+||.|.+. .+....+. .++..+ .+-=++.+|.|-.. ..-.+...+...+ .|
T Consensus 130 p~~~~LVl~a~~~~~~~~~~~-~~~~~~------~~~~lI~TKlDe~~----------------~~G~~l~~~~~~~-~P 185 (213)
T d1vmaa2 130 PHETLLVIDATTGQNGLVQAK-IFKEAV------NVTGIILTKLDGTA----------------KGGITLAIARELG-IP 185 (213)
T ss_dssp CSEEEEEEEGGGHHHHHHHHH-HHHHHS------CCCEEEEECGGGCS----------------CTTHHHHHHHHHC-CC
T ss_pred cceeEEeeccccCcchhhhhh-hhcccc------CCceEEEecccCCC----------------cccHHHHHHHHHC-CC
Confidence 467888988864 34444443 222222 35568899999753 2234566677776 67
Q ss_pred EEEEeeccCCCHHH
Q psy9997 293 YVECSALTQKGLKN 306 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~ 306 (330)
+..++ +|+++++
T Consensus 186 i~~i~--~Gq~v~D 197 (213)
T d1vmaa2 186 IKFIG--VGEKAED 197 (213)
T ss_dssp EEEEE--CSSSGGG
T ss_pred EEEEe--CCCCccc
Confidence 77666 5777754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.73 E-value=0.019 Score=45.24 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=18.4
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++|++||||||++.++...
T Consensus 11 I~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 11 IFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999999888663
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.66 E-value=0.11 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|++||++|||||-|+++++.-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=88.58 E-value=0.12 Score=41.14 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=40.0
Q ss_pred CCEEEEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 214 TDVFLVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
.+-.+||.|.+. .+....+. .++..+ -+-=++.+|.|-... .-.+..++...+ .|
T Consensus 125 p~~~~LVl~a~~~~~~~~~~~-~~~~~~------~~~~lI~TKlDet~~----------------~G~~l~~~~~~~-~P 180 (207)
T d1okkd2 125 PKEVWLVLDAVTGQNGLEQAK-KFHEAV------GLTGVIVTKLDGTAK----------------GGVLIPIVRTLK-VP 180 (207)
T ss_dssp CSEEEEEEETTBCTHHHHHHH-HHHHHH------CCSEEEEECTTSSCC----------------CTTHHHHHHHHC-CC
T ss_pred CceEEEEeecccCchHHHHHH-Hhhhcc------CCceEEEeccCCCCC----------------ccHHHHHHHHHC-CC
Confidence 467888888864 44444444 333333 234578999997532 233455666776 67
Q ss_pred EEEEeeccCCCHHHH
Q psy9997 293 YVECSALTQKGLKNV 307 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~ 307 (330)
+..+| +|++.+++
T Consensus 181 i~~i~--~Gq~p~Dl 193 (207)
T d1okkd2 181 IKFVG--VGEGPDDL 193 (207)
T ss_dssp EEEEE--CSSSTTCE
T ss_pred EEEEe--CCCChHhC
Confidence 66666 46665444
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=88.45 E-value=0.018 Score=47.06 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.3
Q ss_pred EEEeecCCCceeEEEEeecc
Q psy9997 66 CVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~ 85 (330)
+.++|++|+|||||++.+.+
T Consensus 28 ~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 28 LHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EECBCCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 68999999999999988876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.42 E-value=0.027 Score=43.90 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.3
Q ss_pred eeEeEEEeecCCCceeEEEEeecc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
.++=|.|-|++|+|||||++++..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 355688999999999999998864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.39 E-value=0.016 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=19.8
Q ss_pred eeEeEEEeecCCCceeEEEEeecc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+.+-|.++|.+|+||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999888854
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.36 E-value=0.11 Score=41.58 Aligned_cols=67 Identities=7% Similarity=-0.015 Sum_probs=41.3
Q ss_pred CCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 214 TDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
.+-+++|.+.+... ..+.+. .++.. -.+-=++.||.|... ..-.+..++...+ .|
T Consensus 127 ~~~~~LVl~a~~~~~~~~~~~-~~~~~------~~~~~lI~TKlDet~----------------~~G~~l~~~~~~~-lP 182 (211)
T d1j8yf2 127 PDEVTLVIDASIGQKAYDLAS-KFNQA------SKIGTIIITKMDGTA----------------KGGGALSAVAATG-AT 182 (211)
T ss_dssp CSEEEEEEEGGGGGGHHHHHH-HHHHH------CTTEEEEEECTTSCS----------------CHHHHHHHHHTTT-CC
T ss_pred CceEEEEEecccCcchHHHHh-hhhcc------cCcceEEEecccCCC----------------cccHHHHHHHHHC-cC
Confidence 46788898887543 232222 12211 123457899999753 3466677777777 68
Q ss_pred EEEEeeccCCCHHH
Q psy9997 293 YVECSALTQKGLKN 306 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~ 306 (330)
+..+| +|.+|++
T Consensus 183 i~~it--~Gq~v~D 194 (211)
T d1j8yf2 183 IKFIG--TGEKIDE 194 (211)
T ss_dssp EEEEE--CSSSTTC
T ss_pred EEEEe--CCCCccc
Confidence 77776 5877765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.17 E-value=0.13 Score=42.36 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|.+|+|||+++..++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 4899999999999999988864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=88.13 E-value=0.017 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEeecCCCceeEEEEeeccCC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+.++|++|+|||||++.+.+-.
T Consensus 29 ~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 29 FVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCc
Confidence 7899999999999999887754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=88.03 E-value=0.13 Score=42.32 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|.+|+|||+++..++..
T Consensus 48 iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEeeCCCCCCccHHHHHHHHH
Confidence 899999999999999998864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.03 E-value=0.16 Score=40.14 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++-|.+-|.+|+|||++...+...
T Consensus 1 ~P~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 1 EPFLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4677889999999999999887653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.00 E-value=0.023 Score=43.75 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.3
Q ss_pred EEEeecCCCceeEEEEeecc
Q psy9997 66 CVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~ 85 (330)
|+++|.+|+||||+.+.+..
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999877754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.80 E-value=0.14 Score=39.47 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+=|.+-|.+|+|||+|..++..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3466899999999999998864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.79 E-value=0.14 Score=40.80 Aligned_cols=67 Identities=6% Similarity=0.011 Sum_probs=41.6
Q ss_pred CCEEEEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 214 TDVFLVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
.+-.+||.|.+. .+....+. .++..+ .+-=++.+|.|-.. ..-.+...+...+ .|
T Consensus 128 p~~~~LVl~a~~~~~~~~~~~-~~~~~~------~~~~lIlTKlDe~~----------------~~G~~l~~~~~~~-~P 183 (211)
T d2qy9a2 128 PHEVMLTIDASTGQNAVSQAK-LFHEAV------GLTGITLTKLDGTA----------------KGGVIFSVADQFG-IP 183 (211)
T ss_dssp CSEEEEEEEGGGTHHHHHHHH-HHHHHS------CCCEEEEECCTTCT----------------TTTHHHHHHHHHC-CC
T ss_pred cceeeeehhcccCcchHHHHh-hhhhcc------CCceEEEeecCCCC----------------CccHHHHHHHHHC-CC
Confidence 467888988864 44444443 233222 35568899999753 2245556677776 67
Q ss_pred EEEEeeccCCCHHH
Q psy9997 293 YVECSALTQKGLKN 306 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~ 306 (330)
+..++ +|++|++
T Consensus 184 i~~i~--~Gq~v~D 195 (211)
T d2qy9a2 184 IRYIG--VGERIED 195 (211)
T ss_dssp EEEEE--CSSSGGG
T ss_pred EEEEe--CCCCccc
Confidence 77666 6777754
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=87.78 E-value=0.026 Score=46.38 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEeecCCCceeEEEEeeccCC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+.++|++|+|||||++.+.+-.
T Consensus 35 ~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 35 VTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6799999999999999887753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.77 E-value=0.14 Score=40.63 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
++++|..|||||+.+-+++.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=87.69 E-value=0.025 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
-+.++|++|+|||||++.+.+-.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999998887653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.14 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+++.|++|+|||+|..+|+.+.
T Consensus 40 ~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 40 TEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.53 E-value=0.14 Score=39.68 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++=|++-|..||||||++..+...
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988753
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.51 E-value=0.024 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.1
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++.|++|+|||++++.+.++
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999888764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.39 E-value=0.024 Score=45.98 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.0
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++.|++|+|||++++.+..+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 4789999999999999887654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=87.36 E-value=0.1 Score=42.24 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
+.++|.+|+|||+|+..+..
T Consensus 28 ~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 28 LHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EECBCCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 67999999999999988765
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.24 E-value=0.029 Score=46.08 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.0
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
++|.|++|+|||||+.++...
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHH
Confidence 678899999999999887653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.22 E-value=0.18 Score=39.72 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=29.2
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
..+.+.|+||...|...+..-.+.+|.++++.+..
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~ 120 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN 120 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETT
T ss_pred EEEEEeccchHHHHHhhhhcceecccccccccccc
Confidence 46789999999988777777788999999998743
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=87.19 E-value=0.16 Score=41.28 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+.++|..|+|||+|+..++.-
T Consensus 31 ~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 31 FGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999888754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=87.09 E-value=0.03 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEEeecCCCceeEEEEeeccCC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+.++|++|+|||||++.+.+-.
T Consensus 31 ~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 31 FGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999887764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.03 E-value=0.045 Score=42.83 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccC
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+.+.+=|++-|..||||||+++.+...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3455678999999999999999988653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.80 E-value=0.18 Score=38.20 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.7
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
=|++-|+-|+|||+|++.+...-
T Consensus 35 ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEecCCCccHHHHHHHHHhhc
Confidence 47788999999999999888653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=86.63 E-value=0.046 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.+|+|.|.+|+|||||++.++..-
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEeeccccchHHHHHHhhhc
Confidence 459999999999999999988653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.54 E-value=0.17 Score=43.86 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
++++|.+|||||-|..+++.
T Consensus 71 iLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred eeeeCCCCccHHHHHHHHHh
Confidence 89999999999999999875
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=86.42 E-value=0.22 Score=39.97 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=31.0
Q ss_pred CceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 108 ~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
.....+.+.|+||.+.|-.-+..-...+|++++|.|
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvd 121 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVD 121 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEE
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEec
Confidence 345578899999999998888888899999999987
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.21 E-value=0.036 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEeecCCCceeEEEEeeccCC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+.++|++|+|||||++.+.+-.
T Consensus 33 ~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 33 TLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHHCCC
Confidence 5899999999999999887753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.2 Score=39.45 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|++.|.+|+||+|+..++..+
T Consensus 6 I~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 345599999999999888754
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.13 E-value=0.19 Score=42.68 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
++++|.+|||||.|+..++.-
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCcchhHHHHHHHHhh
Confidence 789999999999999998763
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.70 E-value=0.035 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.3
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++||+|||||.|++++.+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhc
Confidence 4789999999999999988764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=85.69 E-value=0.053 Score=43.46 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=13.5
Q ss_pred EeEEEeecCCCceeEEEEeec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~ 84 (330)
--|+++|++||||||.+-++.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEEEECSCCC----HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 447889999999999877665
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=85.67 E-value=0.039 Score=45.73 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.1
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-+.++|++|+|||||++.+.+-
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999988764
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.66 E-value=0.043 Score=43.67 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.7
Q ss_pred eEeEEEeecCCCceeEEEEeecc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
++-|.+-|++|||||||.+++..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46688999999999999988754
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.65 E-value=0.022 Score=46.79 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.7
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.+.++|++|+|||||++.+.+-.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCc
Confidence 47899999999999998887743
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.65 E-value=0.2 Score=39.71 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
+++.|++|+|||.|+.+|+.
T Consensus 29 ~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 29 TLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57889999999999988764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.54 E-value=0.045 Score=46.95 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.2
Q ss_pred eeEeEEEeecCCCceeEEEEeecc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
.-++|-+.|.+|+|||||+.++..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 347888999999999999999975
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.47 E-value=0.18 Score=41.55 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
-|++.|.+|+|||+++..++...
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcchhHHHHHHHHh
Confidence 48999999999999999988653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=85.22 E-value=0.21 Score=42.54 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.+++.|..|+|||+++.-++...
T Consensus 168 nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEeeccccchHHHHHHhhhc
Confidence 48999999999999998887543
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.08 E-value=0.23 Score=40.70 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=25.4
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
+.++|..|+|||+|+..+..- +.|+ .-.+.++++++
T Consensus 33 ~~liG~nGaGKSTLl~~i~Gl-----~~p~-----~G~I~~~g~~i 68 (254)
T d1g6ha_ 33 TLIIGPNGSGKSTLINVITGF-----LKAD-----EGRVYFENKDI 68 (254)
T ss_dssp EEEECSTTSSHHHHHHHHTTS-----SCCS-----EEEEEETTEEC
T ss_pred EEEECCCCCcHHHHHHHHHCC-----CcCC-----CcEEEECCEec
Confidence 689999999999999887653 2233 34556666654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.2 Score=41.90 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|++++|++|||||+|+...+.+
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHH
Confidence 7899999999999999887753
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.88 E-value=0.28 Score=39.17 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=32.9
Q ss_pred CceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 108 ~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
.....+.+.||||...|...+..-.+.+|++++|.+..
T Consensus 78 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~ 115 (224)
T d1jnya3 78 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK 115 (224)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECS
T ss_pred cCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecc
Confidence 34567889999999999999999999999999999744
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.73 E-value=0.041 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.5
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
--+++.|++|+|||++++.+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999877653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.53 E-value=0.042 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.0
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.+++.|++|+|||++++.+....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999887654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.49 E-value=0.043 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.7
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
--|++.|++|+|||++++.+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 35899999999999999888654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=83.89 E-value=0.14 Score=40.88 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=19.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeec
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
..+.-|+++|++||||||.+-++.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345578999999999999876665
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.70 E-value=0.047 Score=43.98 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.1
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++.|++|+|||++++.+...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999887664
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.49 E-value=0.036 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.2
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
+++.|++|+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999888753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.47 E-value=0.051 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred eEeEEEeecCCCceeEEEEeecc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+=+|+++||+|||||-|++++.+
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998875
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=83.37 E-value=0.28 Score=40.11 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=17.6
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy9997 6 CVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~ 25 (330)
.++.|++|+|||+|+..++.
T Consensus 32 ~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999988764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.07 E-value=0.052 Score=43.09 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.3
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|++.|++||||+|+...+...
T Consensus 6 I~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999998777653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=82.93 E-value=0.13 Score=40.95 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.8
Q ss_pred eEEEeecCCCceeEEEEeec
Q psy9997 65 KCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~ 84 (330)
-++++|++||||||.+-++.
T Consensus 8 vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999877764
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.88 E-value=0.056 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=18.2
Q ss_pred eEeEEEeecCCCceeEEEEeecc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
+-++++||++|||||+++..+..
T Consensus 43 k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCeEECCCCCCHHHHHHHHHH
Confidence 34578999999999999865543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.79 E-value=0.34 Score=38.14 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHhCCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f 28 (330)
+++.|++|+|||+++..++...+
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHhcc
Confidence 78999999999999999887544
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.62 E-value=0.059 Score=43.82 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++.|++|+|||++++.+..+
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999888764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=82.56 E-value=0.33 Score=41.19 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|++|+|||.|...+...
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 344699999999999998864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=82.31 E-value=0.52 Score=36.18 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=18.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++=|.+.|.+|+|||+++.-+..
T Consensus 3 p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45577889999999999887754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.14 Score=40.78 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.3
Q ss_pred eEeEEEeecCCCceeEEEEeec
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
+.-|+++|++||||||.+-++.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999999887775
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.06 E-value=0.37 Score=38.76 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHhCC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+++-|++|+|||+++..++...
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6788999999999998877543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=82.01 E-value=0.35 Score=39.58 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|.+|+|||+|+..++.+
T Consensus 38 ~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHh
Confidence 678899999999999988753
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.93 E-value=0.35 Score=41.23 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
|.-++|++=|.-|+||||++..+....
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence 667899999999999999998887643
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.70 E-value=0.073 Score=44.66 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=15.1
Q ss_pred EEeecCCCceeEEEEee
Q psy9997 67 VVVGDGAVGKTCLLISY 83 (330)
Q Consensus 67 ~vvG~~~~GKTsl~~~l 83 (330)
+++|++|+|||+++.++
T Consensus 28 vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEECCTTTCSTHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 68999999999998765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=81.69 E-value=0.022 Score=44.37 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=16.4
Q ss_pred EEEeecCCCceeEEEEeec
Q psy9997 66 CVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~ 84 (330)
.+++|++|+|||||+.++.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4577999999999998875
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.42 E-value=0.33 Score=39.48 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=21.7
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
....+.+.|+||...|...+..-.+.+|++++|.+..
T Consensus 100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~ 136 (245)
T d1r5ba3 100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 136 (245)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECS
T ss_pred ccceeeeecccccccchhhhhhhhhhhcceeeEEEcC
Confidence 3456888999999999999999999999999998744
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.19 E-value=0.068 Score=42.95 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
+++.|++|+|||++++.+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999888764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=80.94 E-value=0.44 Score=37.60 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+=|.+.|-+|+|||++...+...
T Consensus 25 ~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 25 LTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999887653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=80.79 E-value=0.072 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-+++.|++|+|||++++.+.++
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHH
Confidence 3789999999999999988864
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.67 E-value=0.37 Score=39.85 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+.+.|++|+|||+|+..++.+
T Consensus 70 r~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 7899999999999999999765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.66 E-value=0.49 Score=36.72 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.1
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-|++-|.-|+||||++..+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999987653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.21 E-value=0.47 Score=37.57 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
+++.|.+|+|||-|++.++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999888764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=80.19 E-value=0.18 Score=40.02 Aligned_cols=84 Identities=17% Similarity=0.023 Sum_probs=46.0
Q ss_pred cccccccccccccccccCc------cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 191 DRSLFDTAGQEDYDRLRPL------SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
+..++||+|...+....-. ..-+.+-+++|.|.+....-.+....+++.+ .+-=++.+|.|-..
T Consensus 94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~------~~~~~I~TKlDe~~---- 163 (207)
T d1ls1a2 94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV------GVTGLVLTKLDGDA---- 163 (207)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT------CCCEEEEECGGGCS----
T ss_pred cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC------CCCeeEEeecCccc----
Confidence 4456777776544321100 1224578899999875543333221333322 13348899999643
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
..-.+..++...+ .|+..++
T Consensus 164 ------------~~G~~l~~~~~~~-~Pi~~i~ 183 (207)
T d1ls1a2 164 ------------RGGAALSARHVTG-KPIYFAG 183 (207)
T ss_dssp ------------SCHHHHHHHHHHC-CCEEEEC
T ss_pred ------------cchHHHHHHHHHC-CCEEEEe
Confidence 2345666777777 5665554
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.15 E-value=0.077 Score=42.47 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.4
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++.|++|+||||+++.+..+
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHHH
Confidence 4789999999999998877653
|