| UID: | 000022750 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1h8d.1 |
| Range: | C:1C-15,O:16-247 |
| Ligands: | NA NDG |
| PDB: | 1dx5 |
| PDB Description: | Thrombin heavy chain & Thrombin light chain |
| UniProt: | P00734 |
| Hsap BLAST neighbor: | P00734 |
| Species: |
Structure of domain e1dx5.1
Domains in the same chain:
| e1dx5.1 | C:1C-15,O:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
Domains in the same PDB:
| e1dx5.3 | A:1C-15,M:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5.2 | B:1C-15,N:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5.1 | C:1C-15,O:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5.4 | D:1C-15,P:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5I1 | I:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5I2 | I:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5I3 | I:423-462 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5J1 | J:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5J2 | J:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5J3 | J:423-462 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5K1 | K:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5K2 | K:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5K3 | K:423-462 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5L1 | L:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5L2 | L:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5L3 | L:423-462 | EGF-like | EGF-related | EGF/Laminin |
Structural contacts of domain e1dx5.1 of H-group "RIFT-related":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1dx5.1 | O:x,y,z->C:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e1dx5.1 | C:X,Y,Z->O:x,y,z | RIFT-related | Interaction Interface Pymol |
| e1dx5K3 | O:X,Y,Z->K:x,y,z | EGF-related | Interaction Interface Pymol |
| e1dx5K2 | O:X,Y,Z->K:x,y,z | EGF-related | Interaction Interface Pymol |
| e1dx5L1 | O:x,y,z->L:-X+Y-1/3,-X+1/3,Z-2/3 | EGF-related | Interaction Interface Pymol |
| e1dx5I3 | O:x,y,z->I:-X+Y-1/3,-X+1/3,Z+1/3 | EGF-related | Interaction Interface Pymol |
| e1dx5.2 | C:X,Y,Z->N:x,y,z | RIFT-related | Interaction Interface Pymol |
| e1dx5.3 | O:x,y,z->A:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e1dx5J1 | O:X+2/3,Y+1/3,Z+1/3->J:x,y,z | EGF-related | Interaction Interface Pymol |
| e1dx5J1 | O:-Y+1,X-Y+1,Z->J:x,y,z | EGF-related | Interaction Interface Pymol |
| e1dx5.2 | O:x,y,z->N:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e1dx5.3 | O:x,y,z->M:X,Y,Z | RIFT-related | Interaction Interface Pymol |
