| UID: | 000008466 |
|---|---|
| Type: | Manual and representative domain |
| Range: | I:345-387 |
| Ligands: | FMT NA |
| PDB: | 1dx5 |
| PDB Description: | Thrombomodulin |
| UniProt: | P07204 |
| Hsap BLAST neighbor: | P07204 |
| Species: | Homo sapiens |
Structure of domain e1dx5I1
Domains in the same chain:
| e1dx5I1 | I:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5I2 | I:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5I3 | I:423-462 | EGF-like | EGF-related | EGF/Laminin |
Domains in the same PDB:
| e1dx5.3 | A:1C-15,M:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5.2 | B:1C-15,N:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5.1 | C:1C-15,O:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5.4 | D:1C-15,P:16-247 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e1dx5I1 | I:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5I2 | I:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5I3 | I:423-462 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5J1 | J:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5J2 | J:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5J3 | J:423-462 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5K1 | K:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5K2 | K:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5K3 | K:423-462 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5L1 | L:345-387 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5L2 | L:388-422 | EGF-like | EGF-related | EGF/Laminin |
| e1dx5L3 | L:423-462 | EGF-like | EGF-related | EGF/Laminin |
Structural contacts of domain e1dx5I1 of H-group "EGF-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1dx5L2 | I:x,y,z->L:X,Y,Z-1 | EGF-related | Interaction Interface Pymol |
| e1dx5L3 | I:x,y,z->L:X,Y,Z-1 | EGF-related | Interaction Interface Pymol |
| e1dx5J1 | I:x,y,z->J:-Y+2/3,X-Y+1/3,Z-2/3 | EGF-related | Interaction Interface Pymol |
| e1dx5J2 | I:x,y,z->J:-Y+2/3,X-Y+1/3,Z-2/3 | EGF-related | Interaction Interface Pymol |
| e1dx5.3 | I:-Y+2/3,X-Y+1/3,Z+1/3->M:x,y,z | RIFT-related | Interaction Interface Pymol |
| e1dx5K1 | I:x,y,z->K:-X+Y-1/3,-X+1/3,Z-2/3 | EGF-related | Interaction Interface Pymol |
| e1dx5.2 | I:x,y,z->N:X,Y,Z-1 | RIFT-related | Interaction Interface Pymol |
| e1dx5.4 | I:x,y,z->P:X,Y,Z-1 | RIFT-related | Interaction Interface Pymol |
