Domain ID e4durB5

Download files:
  • A: few secondary structure elements
  • X: Kringle-like
  • H: Kringle-like
  • T: Kringle-like
  • F: Kringle
UID: 001139511
Type: Automatic domain
Parent: e2pf1A1
Range: B:345-447
Ligands: CL
PDB: 4dur
PDB Description: PLASMINOGEN
UniProt: P00747
Hsap BLAST neighbor: P00747
Species: Homo sapiens

Structure of domain e4durB5

Domains in the same chain:

e4durB7 B:2-82 Hairpin loop containing domain-like Hairpin loop containing domain-like Hairpin loop containing domain-like
e4durB6 B:83-163 Kringle-like Kringle-like Kringle-like
e4durB3 B:164-250 Kringle-like Kringle-like Kringle-like
e4durB4 B:251-335 Kringle-like Kringle-like Kringle-like
e4durB5 B:345-447 Kringle-like Kringle-like Kringle-like
e4durB2 B:458-546 Kringle-like Kringle-like Kringle-like
e4durB1 B:547-791 cradle loop barrel RIFT-related FMN-binding split barrel 2

Domains in the same PDB:

e4durA6 A:3-80 Hairpin loop containing domain-like Hairpin loop containing domain-like Hairpin loop containing domain-like
e4durA5 A:81-161 Kringle-like Kringle-like Kringle-like
e4durA1 A:162-248 Kringle-like Kringle-like Kringle-like
e4durA7 A:249-332 Kringle-like Kringle-like Kringle-like
e4durA3 A:333-425 Kringle-like Kringle-like Kringle-like
e4durA2 A:426-435,A:460-541 Kringle-like Kringle-like Kringle-like
e4durA4 A:542-791 cradle loop barrel RIFT-related FMN-binding split barrel 2
e4durB7 B:2-82 Hairpin loop containing domain-like Hairpin loop containing domain-like Hairpin loop containing domain-like
e4durB6 B:83-163 Kringle-like Kringle-like Kringle-like
e4durB3 B:164-250 Kringle-like Kringle-like Kringle-like
e4durB4 B:251-335 Kringle-like Kringle-like Kringle-like
e4durB5 B:345-447 Kringle-like Kringle-like Kringle-like
e4durB2 B:458-546 Kringle-like Kringle-like Kringle-like
e4durB1 B:547-791 cradle loop barrel RIFT-related FMN-binding split barrel 2

Structural contacts of domain e4durB5 of H-group "Kringle-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4durB5 B:x,y,z->B:-X,-X+Y,-Z-1/3 Kringle-like Interaction Interface Pymol
e4durB7 B:x,y,z->B:-X,-X+Y,-Z-1/3 Hairpin loop containing domain-like Interaction Interface Pymol
e4durB7 B:-X,-X+Y,-Z-1/3->B:x,y,z Hairpin loop containing domain-like Interaction Interface Pymol
e4durB5 B:-X,-X+Y,-Z-1/3->B:x,y,z Kringle-like Interaction Interface Pymol
e4durA4 B:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol