Domain ID e1bgxT3

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_A
UID: 000057718
Type: Automatic domain
Parent: e2hhvA2
Range: T:423-600
PDB: 1bgx
PDB Description: TAQ DNA POLYMERASE
UniProt: P19821
Hsap BLAST neighbor: Q7Z5Q5
Species: Thermus aquaticus

Structure of domain e1bgxT3

Domains in the same chain:

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e1bgxT4 T:1-173 HAD domain-like HAD domain-related PIN domain-like
e1bgxT1 T:174-289 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e1bgxT8 T:290-422 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1bgxT3 T:423-600 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1bgxT10 T:601-630,T:755-832 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1bgxT9 T:626-754 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1bgxH4 H:5-115 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bgxH3 H:116-209 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bgxL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bgxL2 L:108-211 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1bgxT4 T:1-173 HAD domain-like HAD domain-related PIN domain-like
e1bgxT1 T:174-289 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e1bgxT8 T:290-422 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1bgxT3 T:423-600 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1bgxT10 T:601-630,T:755-832 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1bgxT9 T:626-754 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e1bgxT3 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1bgxH4 T:X,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1bgxL1 T:X,Y,Z->L:x,y,z Immunoglobulin-related Interaction Interface Pymol