Domain ID e1bmfD2

Download files:
  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: ATP-synt_ab
UID: 000102335
Type: Automatic domain
Parent: e2jdiA3
Range: D:82-357
Ligands: ADP MG
PDB: 1bmf
PDB Description: BOVINE MITOCHONDRIAL F1-ATPASE
UniProt: P00829
Hsap BLAST neighbor: P06576
Species: Bos taurus

Structure of domain e1bmfD2

Domains in the same chain:

Download Pymol

e1bmfD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1bmfD2 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1bmfD3 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase

Domains in the same PDB:

e1bmfA1 A:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1bmfA3 A:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1bmfA2 A:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1bmfB1 B:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1bmfB3 B:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1bmfB2 B:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1bmfC1 C:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1bmfC3 C:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1bmfC2 C:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1bmfD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1bmfD2 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1bmfD3 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1bmfE1 E:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1bmfE2 E:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1bmfE3 E:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1bmfF1 F:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1bmfF2 F:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1bmfF3 F:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1bmfG1 G:1-44,G:77-90,G:209-272 ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit

Structural contacts of domain e1bmfD2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1bmfC3 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1bmfC2 D:x,y,z->C:X,Y,Z C-terminal domain of alpha and beta subunits of F1 ATP synthase Interaction Interface Pymol
e1bmfA1 D:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e1bmfA3 D:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1bmfG1 D:X,Y,Z->G:x,y,z ATP synthase (F1-ATPase), gamma subunit Interaction Interface Pymol
e1bmfE3 D:x,y,z->E:X,Y-1,Z C-terminal domain of alpha and beta subunits of F1 ATP synthase Interaction Interface Pymol