Domain ID e1c1cA2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: RVT_1
UID: 000066261
Type: Automatic domain
Parent: e1ztwA1
Range: A:5-241
Ligands: 612
PDB: 1c1c
PDB Description: HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN)
UniProt: P04585
Hsap BLAST neighbor: P63135
Species: Human immunodeficiency virus 1

Structure of domain e1c1cA2

Domains in the same chain:

e1c1cA2 A:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1c1cA1 A:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1c1cA4 A:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1c1cA3 A:431-539 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e1c1cA2 A:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1c1cA1 A:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1c1cA4 A:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1c1cA3 A:431-539 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1c1cB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1c1cB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1c1cB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1c1cA2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1c1cB2 A:X,Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1c1cA3 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e1c1cA4 A:x,y,z->A:-X,Y-1/2,-Z+1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e1c1cA1 A:x,y,z->A:-X,Y-1/2,-Z+1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1c1cB2 A:-X+1/2,-Y-1,Z-1/2->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1c1cA4 A:X,Y,Z-1->A:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e1c1cB2 A:X,Y,Z-1->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1c1cB3 A:X,Y,Z-1->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e1c1cA1 A:x,y,z->A:-X,Y-1/2,-Z+3/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1c1cB3 A:x,y,z->B:X-1/2,-Y-1/2,-Z+1 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol