ECOD: domain e1clqA4

Domain ID e1clqA4

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: DNA_pol_B_exo1

UID:	000115110
Type:	Automatic domain
Parent:	e1ih7A4
Range:	A:1-375
Ligands:	CA GDP
PDB:	1clq
PDB Description:	PROTEIN (DNA POLYMERASE)
UniProt:	Q38087
Species:	Enterobacteria phage RB69

Domains in the same chain:

Download Pymol

e1clqA4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1clqA3	A:376-467,A:574-731	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1clqA1	A:468-573	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1clqA2	A:732-902	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1clqA4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1clqA3	A:376-467,A:574-731	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1clqA1	A:468-573	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1clqA2	A:732-902	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1clqA4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1clqA1	A:x,y,z->A:-Y,X-Y-1,Z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1clqA2	A:x,y,z->A:-Y-1/3,X-Y-2/3,Z+1/3	"thumb" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1clqA3	A:x,y,z->A:-X+Y+2/3,-X+1/3,Z+1/3	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol