ECOD: domain e1cvrA4

Domain ID e1cvrA4

A: a/b three-layered sandwiches
X: Gingipain R extra N-terminal alpha/beta domain
H: Gingipain R extra N-terminal alpha/beta domain
T: Gingipain R extra N-terminal alpha/beta domain
F: Peptidase_C25

UID:	001030854
Type:	Manual and representative domain
Range:	A:1-137
PDB:	1cvr
PDB Description:	GINGIPAIN R
UniProt:	P95493
Species:	Porphyromonas gingivalis

Domains in the same chain:

Download Pymol

e1cvrA4	A:1-137	Gingipain R extra N-terminal alpha/beta domain	Gingipain R extra N-terminal alpha/beta domain	Gingipain R extra N-terminal alpha/beta domain
e1cvrA3	A:138-350	Caspase-like	Caspase-like	Caspase-like
e1cvrA1	A:351-432	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e1cvrA4	A:1-137	Gingipain R extra N-terminal alpha/beta domain	Gingipain R extra N-terminal alpha/beta domain	Gingipain R extra N-terminal alpha/beta domain
e1cvrA3	A:138-350	Caspase-like	Caspase-like	Caspase-like
e1cvrA1	A:351-432	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e1cvrA4 of H-group "Gingipain R extra N-terminal alpha/beta domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1cvrA3	A:X-1/2,-Y+1/2,-Z+1->A:x,y,z	Caspase-like	Interaction Interface Pymol
e1cvrA4	A:x,y,z->A:X-1/2,-Y+3/2,-Z+1	Gingipain R extra N-terminal alpha/beta domain	Interaction Interface Pymol
e1cvrA1	A:x,y,z->A:X-1/2,-Y+3/2,-Z+1	Immunoglobulin-related	Interaction Interface Pymol
e1cvrA4	A:X-1/2,-Y+3/2,-Z+1->A:x,y,z	Gingipain R extra N-terminal alpha/beta domain	Interaction Interface Pymol
e1cvrA3	A:X-1/2,-Y+3/2,-Z+1->A:x,y,z	Caspase-like	Interaction Interface Pymol
e1cvrA1	A:x,y,z->A:-X+3,Y-1/2,-Z+3/2	Immunoglobulin-related	Interaction Interface Pymol
e1cvrA3	A:X-1,Y,Z->A:x,y,z	Caspase-like	Interaction Interface Pymol
e1cvrA3	A:x,y,z->A:-X+5/2,-Y+1,Z-1/2	Caspase-like	Interaction Interface Pymol