ECOD: domain e1d9fA2

Domain ID e1d9fA2

A: alpha bundles
X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
F: DNA_pol_A

UID:	000057697
Type:	Automatic domain
Parent:	e2hhvA2
Range:	A:519-695
Ligands:	SO4
PDB:	1d9f
PDB Description:	DNA POLYMERASE I
UniProt:	P00582
Hsap BLAST neighbor:	Q7Z5Q5
Species:	Escherichia coli

Domains in the same chain:

Download Pymol

e1d9fA4	A:324-518	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1d9fA2	A:519-695	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1d9fA3	A:696-719,A:844-927	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1d9fA1	A:720-843	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1d9fA4	A:324-518	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1d9fA2	A:519-695	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1d9fA3	A:696-719,A:844-927	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1d9fA1	A:720-843	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e1d9fA2 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1d9fA2	A:x,y,z->A:-X+2,-Y+1,Z-1/2	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1d9fA1	A:x,y,z->A:-X+2,-Y+1,Z-1/2	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e1d9fA3	A:-X+2,-Y+1,Z-1/2->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e1d9fA1	A:-X+2,-Y+1,Z-1/2->A:x,y,z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e1d9fA2	A:-X+2,-Y+1,Z-1/2->A:x,y,z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1d9fA4	A:-Y+1,X,Z-1/4->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol