ECOD: domain e1dgsB2

Domain ID e1dgsB2

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: HHH_2

UID:	000047765
Type:	Automatic domain
Parent:	e1dgsA2
Range:	B:2401-2581
Ligands:	ZN
PDB:	1dgs
PDB Description:	DNA LIGASE
UniProt:	Q9ZHI0
Species:	Thermus filiformis

Domains in the same chain:

Download Pymol

e1dgsB3	B:2001-2314	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1dgsB1	B:2315-2400	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1dgsB2	B:2401-2581	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

Structural contacts of domain e1dgsB2 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1dgsA2	B:x,y,z->A:X,Y-1,Z-1	SAM/DNA-glycosylase	Interaction Interface Pymol
e1dgsA1	B:x,y,z->A:X,Y-1,Z-1	Nucleic acid-binding proteins	Interaction Interface Pymol
e1dgsA3	B:x,y,z->A:-X+1,Y-1/2,-Z	Protein kinase/SAICAR synthase/ATP-grasp	Interaction Interface Pymol
e1dgsA3	B:x,y,z->A:-X,Y-1/2,-Z-1	Protein kinase/SAICAR synthase/ATP-grasp	Interaction Interface Pymol

e1dgsA3	A:1-314	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1dgsA1	A:315-400	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1dgsA2	A:401-581	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1dgsB3	B:2001-2314	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e1dgsB1	B:2315-2400	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1dgsB2	B:2401-2581	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like