Domain ID e1dp0B5

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000094658
Type: Automatic domain
Parent: e1jz8A5
Range: B:334-625
Ligands: DMS MG NA
PDB: 1dp0
PDB Description: BETA-GALACTOSIDASE
UniProt: P00722
Hsap BLAST neighbor: P08236
Species: Escherichia coli

Structure of domain e1dp0B5

Domains in the same chain:

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e1dp0B1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1dp0B2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0B5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1dp0B3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0B4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e1dp0A1 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1dp0A2 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0A5 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1dp0A3 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0A4 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1dp0B1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1dp0B2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0B5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1dp0B3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0B4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1dp0C1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1dp0C2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0C5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1dp0C3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0C4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1dp0D1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1dp0D2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0D5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1dp0D3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1dp0D4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e1dp0B5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dp0C2 B:X,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1dp0C5 B:X,Y,Z->C:x,y,z TIM barrels Interaction Interface Pymol
e1dp0C1 B:X,Y,Z->C:x,y,z Galactose-binding domain-like Interaction Interface Pymol
e1dp0A5 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol