Domain ID e1dppC4

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: SBP_bac_5
UID: 001520035
Type: Automatic domain
Parent: e1dpeA4
Range: C:262-478
Ligands: GLY LEU
PDB: 1dpp
PDB Description: DIPEPTIDE BINDING PROTEIN
UniProt: P23847
Species: Escherichia coli

Structure of domain e1dppC4

Domains in the same chain:

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e1dppC2 C:1-15,C:157-261,C:479-507 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppC3 C:16-156 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e1dppC4 C:262-478 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e1dppA4 A:1-15,A:157-261,A:479-507 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppA3 A:16-156 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e1dppA1 A:262-478 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppC2 C:1-15,C:157-261,C:479-507 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppC3 C:16-156 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e1dppC4 C:262-478 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppE1 E:1-15,E:157-261,E:479-507 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppE3 E:16-156 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e1dppE2 E:262-478 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppG4 G:1-15,G:157-261,G:479-507 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e1dppG3 G:16-156 Alpha-beta plaits Oligo-peptide binding protein (OPPA) insertion domain Oligo-peptide binding protein (OPPA) insertion domain
e1dppG2 G:262-478 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e1dppC4 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dppA1 C:x,y,z->A:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e1dppA4 C:x,y,z->A:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e1dppA3 C:X-Y+1,X,Z+1/6->A:x,y,z Oligo-peptide binding protein (OPPA) insertion domain Interaction Interface Pymol