Domain ID e1e3dB3

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: NiFeSe_Hases
UID: 000077055
Type: Automatic domain
Parent: e1ublL5
Range: B:9-48,B:501-541
Ligands: FNE
PDB: 1e3d
PDB Description: [NiFe] hydrogenase large subunit
UniProt: Q9L868
Species: Desulfovibrio desulfuricans

Structure of domain e1e3dB3

Domains in the same chain:

e1e3dB3 B:9-48,B:501-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1e3dB4 B:49-91,B:452-500 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1e3dB2 B:92-321,B:372-451 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1e3dB1 B:322-371 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e1e3dA2 A:5-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1e3dA1 A:183-265 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1e3dB3 B:9-48,B:501-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1e3dB4 B:49-91,B:452-500 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1e3dB2 B:92-321,B:372-451 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1e3dB1 B:322-371 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1e3dC2 C:5-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1e3dC1 C:183-265 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1e3dD3 D:9-48,D:501-541 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1e3dD4 D:49-91,D:452-500 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1e3dD2 D:92-321,D:372-451 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1e3dD1 D:322-371 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Structural contacts of domain e1e3dB3 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1e3dA2 B:x,y,z->A:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e1e3dD3 B:x,y,z->D:-X+1,Y-1/2,-Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1e3dD2 B:x,y,z->D:-X,Y-1/2,-Z+1 alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol