ECOD: domain e1e6jP2

Domain ID e1e6jP2

A: alpha bundles
X: Retrovirus capsid protein
H: Retrovirus capsid protein N-terminal domain
T: Retrovirus capsid protein N-terminal domain
F: Gag_p24

UID:	000056880
Type:	Automatic domain
Parent:	e2pxrC1
Range:	P:11-145
PDB:	1e6j
PDB Description:	CAPSID PROTEIN P24
UniProt:	H9A150
Species:

Domain
In chain context
In PDB context

Structure of domain e1e6jP2

Domains in the same chain:

Download Pymol

e1e6jP2	P:11-145	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e1e6jP1	P:151-220	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C

Domains in the same PDB:

e1e6jH1	H:1-120	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1e6jH2	H:121-219	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1e6jL1	L:1-105	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1e6jL2	L:106-210	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1e6jP2	P:11-145	Retrovirus capsid protein	Retrovirus capsid protein N-terminal domain	Retrovirus capsid protein N-terminal domain
e1e6jP1	P:151-220	Retrovirus capsid protein	Retrovirus capsid protein-C	Retrovirus capsid protein-C

Structural contacts of domain e1e6jP2 of H-group "Retrovirus capsid protein N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1e6jP1	P:x,y,z->P:-X,Y,-Z	Retrovirus capsid protein-C	Interaction Interface Pymol
e1e6jP1	P:-X,Y,-Z->P:x,y,z	Retrovirus capsid protein-C	Interaction Interface Pymol
e1e6jH1	P:x,y,z->H:X-1/2,Y+1/2,Z	Immunoglobulin-related	Interaction Interface Pymol
e1e6jH2	P:x,y,z->H:X-1/2,Y+1/2,Z	Immunoglobulin-related	Interaction Interface Pymol
e1e6jL2	P:x,y,z->L:X-1/2,Y+1/2,Z	Immunoglobulin-related	Interaction Interface Pymol
e1e6jL1	P:x,y,z->L:-X,Y,-Z	Immunoglobulin-related	Interaction Interface Pymol
e1e6jH1	P:x,y,z->H:-X,Y,-Z	Immunoglobulin-related	Interaction Interface Pymol