| UID: | 000006808 |
|---|---|
| Type: | Manual and representative domain |
| Range: | B:71-148,B:178-203 |
| Ligands: | PBM |
| PDB: | 1efn |
| PDB Description: | HIV-1 NEF PROTEIN |
| UniProt: | P03406 |
| Species: | Human immunodeficiency virus 1 |
Structure of domain e1efnB1
Domains in the same chain:
| e1efnB1 | B:71-148,B:178-203 | Regulatory factor Nef | Regulatory factor Nef | Regulatory factor Nef |
Domains in the same PDB:
| e1efnA1 | A:85-141 | SH3 | SH3 | SH3 |
| e1efnB1 | B:71-148,B:178-203 | Regulatory factor Nef | Regulatory factor Nef | Regulatory factor Nef |
| e1efnC1 | C:85-141 | SH3 | SH3 | SH3 |
| e1efnD1 | D:71-148,D:178-203 | Regulatory factor Nef | Regulatory factor Nef | Regulatory factor Nef |
Structural contacts of domain e1efnB1 of H-group "Regulatory factor Nef":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1efnA1 | B:x,y,z->A:X,Y,Z | SH3 | Interaction Interface Pymol |
| e1efnD1 | B:x,y,z->D:-X+1,-X+Y,-Z+1/3 | Regulatory factor Nef | Interaction Interface Pymol |
| e1efnD1 | B:X,Y,Z->D:x,y,z | Regulatory factor Nef | Interaction Interface Pymol |
| e1efnC1 | B:X-Y,X,Z-1/6->C:x,y,z | SH3 | Interaction Interface Pymol |
| e1efnB1 | B:x,y,z->B:-X+Y+1,Y,-Z+1/2 | Regulatory factor Nef | Interaction Interface Pymol |
| e1efnB1 | B:-X+Y+1,Y,-Z+1/2->B:x,y,z | Regulatory factor Nef | Interaction Interface Pymol |
| e1efnC1 | B:x,y,z->C:-X+1,-X+Y,-Z+1/3 | SH3 | Interaction Interface Pymol |
