Domain ID e1efrD2

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: ATP-synt_ab
UID: 000102321
Type: Automatic domain
Parent: e2jdiA3
Range: D:82-357
Ligands: ADP MG
PDB: 1efr
PDB Description: BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA
UniProt: P00829
Hsap BLAST neighbor: P06576
Species: Bos taurus

Structure of domain e1efrD2

Domains in the same chain:

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e1efrD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1efrD2 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1efrD3 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase

Domains in the same PDB:

e1efrA1 A:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1efrA3 A:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1efrA2 A:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1efrB1 B:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1efrB3 B:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1efrB2 B:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1efrC1 C:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1efrC3 C:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1efrC2 C:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1efrD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1efrD2 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1efrD3 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1efrE1 E:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1efrE2 E:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1efrE3 E:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1efrF1 F:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1efrF2 F:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1efrF3 F:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1efrG1 G:1-44,G:77-90,G:209-272 ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit

Structural contacts of domain e1efrD2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1efrC2 D:x,y,z->C:X,Y,Z C-terminal domain of alpha and beta subunits of F1 ATP synthase Interaction Interface Pymol
e1efrC3 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1efrA1 D:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e1efrA3 D:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1efrG1 D:X,Y,Z->G:x,y,z ATP synthase (F1-ATPase), gamma subunit Interaction Interface Pymol