ECOD: domain e1ep1A1

Domain ID e1ep1A1

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: DHO_dh

UID:	000093005
Type:	Automatic domain
Parent:	e1jubA1
Range:	A:3-311
Ligands:	FAD FMN
PDB:	1ep1
PDB Description:	DIHYDROOROTATE DEHYDROGENASE B (PYRD SUBUNIT)
UniProt:	P54322
Hsap BLAST neighbor:	Q12882
Species:	Lactococcus lactis

Domain
In chain context
In PDB context

Structure of domain e1ep1A1

Domains in the same chain:

Download Pymol

e1ep1A1	A:3-311	TIM beta/alpha-barrel	TIM barrels	TIM barrels

Domains in the same PDB:

e1ep1A1	A:3-311	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ep1B3	B:2-102	cradle loop barrel	RIFT-related	Alanine racemase-C
e1ep1B1	B:103-221,B:252-262	Ferredoxin reductase-like, C-terminal NADP-linked domain	Ferredoxin reductase-like, C-terminal NADP-linked domain	Ferredoxin reductase-like, C-terminal NADP-linked domain
e1ep1B2	B:222-251	Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain	Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain	Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain

Structural contacts of domain e1ep1A1 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ep1A1	A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+1/3	TIM barrels	Interaction Interface Pymol
e1ep1A1	A:-X+2/3,-X+Y+1/3,-Z+1/3->A:x,y,z	TIM barrels	Interaction Interface Pymol
e1ep1B2	A:X,Y,Z->B:x,y,z	Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain	Interaction Interface Pymol
e1ep1B3	A:X,Y,Z->B:x,y,z	RIFT-related	Interaction Interface Pymol
e1ep1A1	A:x,y,z->A:X-Y+1/3,-Y+2/3,-Z+2/3	TIM barrels	Interaction Interface Pymol
e1ep1A1	A:X-Y+1/3,-Y+2/3,-Z+2/3->A:x,y,z	TIM barrels	Interaction Interface Pymol
e1ep1A1	A:x,y,z->A:Y,X,-Z+1	TIM barrels	Interaction Interface Pymol
e1ep1A1	A:Y,X,-Z+1->A:x,y,z	TIM barrels	Interaction Interface Pymol
e1ep1B1	A:x,y,z->B:-X+Y+2/3,-X+1/3,Z+1/3	Ferredoxin reductase-like, C-terminal NADP-linked domain	Interaction Interface Pymol
e1ep1B3	A:-X+2/3,-X+Y+1/3,-Z+1/3->B:x,y,z	RIFT-related	Interaction Interface Pymol
e1ep1A1	A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+4/3	TIM barrels	Interaction Interface Pymol
e1ep1A1	A:-X+2/3,-X+Y+1/3,-Z+4/3->A:x,y,z	TIM barrels	Interaction Interface Pymol
e1ep1B1	A:X-Y,-Y,-Z+1->B:x,y,z	Ferredoxin reductase-like, C-terminal NADP-linked domain	Interaction Interface Pymol