| UID: | 000093004 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1jubA1 |
| Range: | A:3-311 |
| Ligands: | FAD FMN ORO |
| PDB: | 1ep2 |
| PDB Description: | DIHYDROOROTATE DEHYDROGENASE B (PYRD SUBUNIT) |
| UniProt: | P54322 |
| Hsap BLAST neighbor: | Q12882 |
| Species: | Lactococcus lactis |
Structure of domain e1ep2A1
Domains in the same chain:
| e1ep2A1 | A:3-311 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Domains in the same PDB:
Structural contacts of domain e1ep2A1 of H-group "TIM barrels":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1ep2A1 | A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+1/3 | TIM barrels | Interaction Interface Pymol |
| e1ep2A1 | A:-X+2/3,-X+Y+1/3,-Z+1/3->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e1ep2B1 | A:X,Y,Z->B:x,y,z | RIFT-related | Interaction Interface Pymol |
| e1ep2B3 | A:X,Y,Z->B:x,y,z | Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain | Interaction Interface Pymol |
| e1ep2A1 | A:x,y,z->A:X-Y+1/3,-Y+2/3,-Z+2/3 | TIM barrels | Interaction Interface Pymol |
| e1ep2A1 | A:X-Y+1/3,-Y+2/3,-Z+2/3->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e1ep2A1 | A:x,y,z->A:Y,X,-Z+1 | TIM barrels | Interaction Interface Pymol |
| e1ep2A1 | A:Y,X,-Z+1->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e1ep2B2 | A:x,y,z->B:-X+Y+2/3,-X+1/3,Z+1/3 | Ferredoxin reductase-like, C-terminal NADP-linked domain | Interaction Interface Pymol |
| e1ep2B1 | A:-X+2/3,-X+Y+1/3,-Z+1/3->B:x,y,z | RIFT-related | Interaction Interface Pymol |
| e1ep2A1 | A:x,y,z->A:-X+2/3,-X+Y+1/3,-Z+4/3 | TIM barrels | Interaction Interface Pymol |
| e1ep2A1 | A:-X+2/3,-X+Y+1/3,-Z+4/3->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e1ep2B2 | A:X-Y,-Y,-Z+1->B:x,y,z | Ferredoxin reductase-like, C-terminal NADP-linked domain | Interaction Interface Pymol |
