Domain ID e1eqnB2

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  • A: a/b three-layered sandwiches
  • X: HAD domain-like
  • H: HAD domain-related
  • T: Toprim domain
  • F: Toprim_2
UID: 001407608
Type: Automatic domain
Parent: e1nuiA3
Range: B:241-367
PDB: 1eqn
PDB Description: DNA PRIMASE
UniProt: P0ABS5
Species: Escherichia coli

Structure of domain e1eqnB2

Domains in the same chain:

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e1eqnB1 B:115-240 N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core
e1eqnB2 B:241-367 HAD domain-like HAD domain-related Toprim domain
e1eqnB3 B:368-427 helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core

Domains in the same PDB:

e1eqnA1 A:113-240 N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core
e1eqnA2 A:241-367 HAD domain-like HAD domain-related Toprim domain
e1eqnA3 A:368-427 helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core
e1eqnB1 B:115-240 N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core
e1eqnB2 B:241-367 HAD domain-like HAD domain-related Toprim domain
e1eqnB3 B:368-427 helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core
e1eqnC1 C:114-240 N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core
e1eqnC2 C:241-367 HAD domain-like HAD domain-related Toprim domain
e1eqnC3 C:368-428 helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core
e1eqnD1 D:115-240 N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core
e1eqnD2 D:241-367 HAD domain-like HAD domain-related Toprim domain
e1eqnD3 D:368-428 helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core
e1eqnE1 E:115-240 N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core N-terminal a+b domain in DNA primase core
e1eqnE2 E:241-367 HAD domain-like HAD domain-related Toprim domain
e1eqnE3 E:368-422 helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core helical domain in DNA primase DnaG catalytic core

Structural contacts of domain e1eqnB2 of H-group "HAD domain-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1eqnA2 B:x,y,z->A:X,Y,Z HAD domain-related Interaction Interface Pymol
e1eqnA1 B:x,y,z->A:X,Y,Z N-terminal a+b domain in DNA primase core Interaction Interface Pymol
e1eqnC1 B:X,Y,Z->C:x,y,z N-terminal a+b domain in DNA primase core Interaction Interface Pymol
e1eqnC2 B:X,Y,Z->C:x,y,z HAD domain-related Interaction Interface Pymol
e1eqnA1 B:x,y,z->A:-X,Y-1/2,-Z+1/2 N-terminal a+b domain in DNA primase core Interaction Interface Pymol