Domain ID e1fk9B1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 000054758
Type: Automatic domain
Parent: e2zd1B1
Range: B:242-315
PDB: 1fk9
PDB Description: HIV-1 RT, B-CHAIN
UniProt: P04585
Species: Human immunodeficiency virus 1

Structure of domain e1fk9B1

Domains in the same chain:

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e1fk9B2 B:6-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1fk9B1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1fk9B3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e1fk9A11 A:4-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1fk9A10 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1fk9A9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1fk9A12 A:429-539 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1fk9B2 B:6-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1fk9B1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1fk9B3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1fk9B1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1fk9A12 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e1fk9A12 B:x,y,z->A:-X+1/2,-Y,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e1fk9A11 B:x,y,z->A:-X+1/2,-Y,Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1fk9A9 B:x,y,z->A:-X+1/2,-Y,Z-1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e1fk9A10 B:x,y,z->A:-X+1/2,-Y,Z-1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol