Domain ID e1gaxB6

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Unmapped domains
UID: 000132968
Type: Automatic domain
Parent: e1ivsA7
Range: B:407-452
Ligands: ZN
PDB: 1gax
PDB Description: VALYL-TRNA SYNTHETASE
UniProt: P96142
Species: Thermus thermophilus

Structure of domain e1gaxB6

Domains in the same chain:

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e1gaxB8 B:1-165,B:453-520 HUP domain-like HUP domains HUP domains
e1gaxB4 B:166-189,B:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1gaxB1 B:195-337 cradle loop barrel RIFT-related acid protease
e1gaxB6 B:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1gaxB7 B:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1gaxB5 B:711-795 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1gaxB3 B:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm

Domains in the same PDB:

e1gaxA8 A:1-165,A:453-520 HUP domain-like HUP domains HUP domains
e1gaxA4 A:166-189,A:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1gaxA1 A:195-337 cradle loop barrel RIFT-related acid protease
e1gaxA6 A:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1gaxA7 A:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1gaxA5 A:711-795 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1gaxA3 A:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm
e1gaxB8 B:1-165,B:453-520 HUP domain-like HUP domains HUP domains
e1gaxB4 B:166-189,B:343-406 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1gaxB1 B:195-337 cradle loop barrel RIFT-related acid protease
e1gaxB6 B:407-452 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1gaxB7 B:521-711 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1gaxB5 B:711-795 A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
e1gaxB3 B:797-862 Long alpha-hairpin tRNA-binding arm tRNA-binding arm

Structural contacts of domain e1gaxB6 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gaxA4 B:-Y+1/2,X-1/2,Z+1/2->A:x,y,z Rubredoxin-related Interaction Interface Pymol
e1gaxA1 B:-Y+1/2,X-1/2,Z+1/2->A:x,y,z RIFT-related Interaction Interface Pymol
e1gaxA6 B:-Y+1/2,X-1/2,Z+1/2->A:x,y,z Rubredoxin-related Interaction Interface Pymol