ECOD: domain e1gdeB2

Domain ID e1gdeB2

A: a/b three-layered sandwiches
X: PLP-dependent transferases
H: PLP-dependent transferases
T: PLP-dependent transferases
F: Aminotran_1_2

UID:	001152530
Type:	Automatic domain
Parent:	e1c7nA2
Range:	B:502-781
Ligands:	GLU PLP
PDB:	1gde
PDB Description:	ASPARTATE AMINOTRANSFERASE
UniProt:	O59096
Hsap BLAST neighbor:	Q16773
Species:	Pyrococcus horikoshii

Domains in the same chain:

Download Pymol

e1gdeB2	B:502-781	PLP-dependent transferases	PLP-dependent transferases	PLP-dependent transferases
e1gdeB3	B:782-889	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases

Domains in the same PDB:

e1gdeA2	A:2-281	PLP-dependent transferases	PLP-dependent transferases	PLP-dependent transferases
e1gdeA1	A:282-389	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases
e1gdeB2	B:502-781	PLP-dependent transferases	PLP-dependent transferases	PLP-dependent transferases
e1gdeB3	B:782-889	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases

Structural contacts of domain e1gdeB2 of H-group "PLP-dependent transferases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1gdeA2	B:x,y,z->A:X,Y,Z	PLP-dependent transferases	Interaction Interface Pymol
e1gdeA2	B:-X+1/2,-Y,Z-1/2->A:x,y,z	PLP-dependent transferases	Interaction Interface Pymol
e1gdeA1	B:-X+1,Y-1/2,-Z+1/2->A:x,y,z	C-terminal domain in some PLP-dependent transferases	Interaction Interface Pymol
e1gdeA2	B:-X+1,Y-1/2,-Z+1/2->A:x,y,z	PLP-dependent transferases	Interaction Interface Pymol
e1gdeB2	B:x,y,z->B:X-1,Y,Z	PLP-dependent transferases	Interaction Interface Pymol
e1gdeB2	B:X-1,Y,Z->B:x,y,z	PLP-dependent transferases	Interaction Interface Pymol
e1gdeB3	B:X-1,Y,Z->B:x,y,z	C-terminal domain in some PLP-dependent transferases	Interaction Interface Pymol
e1gdeA1	B:-X+3/2,-Y,Z-1/2->A:x,y,z	C-terminal domain in some PLP-dependent transferases	Interaction Interface Pymol