Domain ID e1gpmD3

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: Class I glutamine amidotransferase-like
  • F: GATase
UID: 000104093
Type: Automatic domain
Parent: e1gpmA3
Range: D:3-207
Ligands: CIT
PDB: 1gpm
PDB Description: GMP SYNTHETASE
UniProt: P04079
Hsap BLAST neighbor: P49915
Species:

Structure of domain e1gpmD3

Domains in the same chain:

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e1gpmD3 D:3-207 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1gpmD2 D:208-343,D:368-404 HUP domain-like HUP domains HUP domains
e1gpmD1 D:405-525 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain

Domains in the same PDB:

e1gpmA3 A:3-207 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1gpmA2 A:208-346,A:369-404 HUP domain-like HUP domains HUP domains
e1gpmA1 A:405-525 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain
e1gpmB3 B:3-207 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1gpmB2 B:208-343,B:368-404 HUP domain-like HUP domains HUP domains
e1gpmB1 B:405-525 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain
e1gpmC3 C:3-207 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1gpmC2 C:208-404 HUP domain-like HUP domains HUP domains
e1gpmC1 C:405-525 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain
e1gpmD3 D:3-207 Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like
e1gpmD2 D:208-343,D:368-404 HUP domain-like HUP domains HUP domains
e1gpmD1 D:405-525 Alpha-lytic protease prodomain-like GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain

Structural contacts of domain e1gpmD3 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gpmC1 D:x,y,z->C:X,Y,Z GMP synthetase C-terminal dimerisation domain Interaction Interface Pymol
e1gpmC2 D:x,y,z->C:X,Y,Z HUP domains Interaction Interface Pymol
e1gpmC3 D:-X+1,Y-1/2,-Z+1->C:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol
e1gpmD2 D:X,Y,Z-1->D:x,y,z HUP domains Interaction Interface Pymol
e1gpmD2 D:-X+1,Y-1/2,-Z+1->D:x,y,z HUP domains Interaction Interface Pymol