Domain ID e1gt8B4

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: FAD/NAD(P)-binding domain
  • F: Unmapped domains
UID: 000098584
Type: Automatic domain
Parent: e1gteA4
Range: B:288-440
Ligands: FAD NDP
PDB: 1gt8
PDB Description: DIHYDROPYRIMIDINE DEHYDROGENASE
UniProt: Q28943
Hsap BLAST neighbor: Q12882
Species: Sus scrofa

Structure of domain e1gt8B4

Domains in the same chain:

e1gt8B1 B:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gt8B5 B:184-287,B:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gt8B4 B:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gt8B3 B:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gt8B2 B:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin

Domains in the same PDB:

e1gt8A1 A:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gt8A5 A:184-287,A:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gt8A4 A:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gt8A3 A:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gt8A2 A:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gt8B1 B:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gt8B5 B:184-287,B:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gt8B4 B:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gt8B3 B:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gt8B2 B:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gt8C1 C:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gt8C5 C:184-287,C:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gt8C4 C:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gt8C3 C:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gt8C2 C:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gt8D1 D:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gt8D5 D:184-287,D:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gt8D4 D:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gt8D3 D:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gt8D2 D:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin

Structural contacts of domain e1gt8B4 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gt8A4 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e1gt8A1 B:x,y,z->A:X,Y,Z alpha-helical ferredoxin Interaction Interface Pymol
e1gt8D5 B:x,y,z->D:-X+2,Y-1/2,-Z+1 Rossmann-related Interaction Interface Pymol
e1gt8D4 B:x,y,z->D:-X+2,Y-1/2,-Z+1 Rossmann-related Interaction Interface Pymol
e1gt8A2 B:x,y,z->A:-X+2,Y-1/2,-Z+1 4Fe-4S ferredoxin Interaction Interface Pymol