Domain ID e1gteD5

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Nucleotide-binding domain
  • F: Pyr_redox_2
UID: 000099143
Type: Automatic domain
Parent: e1gteA5
Range: D:184-287,D:441-532
Ligands: FAD SF4
PDB: 1gte
PDB Description: DIHYDROPYRIMIDINE DEHYDROGENASE
UniProt: Q28943
Hsap BLAST neighbor: Q12882
Species: Sus scrofa

Structure of domain e1gteD5

Domains in the same chain:

e1gteD1 D:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gteD5 D:184-287,D:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gteD4 D:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gteD3 D:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gteD2 D:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin

Domains in the same PDB:

e1gteA1 A:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gteA5 A:184-287,A:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gteA4 A:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gteA3 A:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gteA2 A:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gteB1 B:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gteB5 B:184-287,B:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gteB4 B:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gteB3 B:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gteB2 B:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gteC1 C:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gteC5 C:184-287,C:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gteC4 C:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gteC3 C:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gteC2 C:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gteD1 D:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gteD5 D:184-287,D:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gteD4 D:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gteD3 D:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gteD2 D:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin

Structural contacts of domain e1gteD5 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gteC1 D:x,y,z->C:X,Y,Z alpha-helical ferredoxin Interaction Interface Pymol
e1gteB4 D:x,y,z->B:X-1,Y,Z-1 Rossmann-related Interaction Interface Pymol
e1gteC2 D:x,y,z->C:-X+1,Y-1/2,-Z 4Fe-4S ferredoxin Interaction Interface Pymol
e1gteD2 D:x,y,z->D:X-1,Y,Z 4Fe-4S ferredoxin Interaction Interface Pymol