Domain ID e1gthC2

Download files:
  • A: a+b two layers
  • X: 4Fe-4S ferredoxin
  • H: 4Fe-4S ferredoxin
  • T: 4Fe-4S ferredoxin
  • F: Fer4_21
UID: 000067060
Type: Automatic domain
Parent: e1gteA2
Range: C:845-1017
Ligands: SF4
PDB: 1gth
PDB Description: DIHYDROPYRIMIDINE DEHYDROGENASE
UniProt: Q28943
Hsap BLAST neighbor: Q12882
Species: Sus scrofa

Structure of domain e1gthC2

Domains in the same chain:

e1gthC1 C:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gthC5 C:184-287,C:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gthC4 C:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gthC3 C:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gthC2 C:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin

Domains in the same PDB:

e1gthA1 A:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gthA5 A:184-287,A:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gthA4 A:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gthA3 A:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gthA2 A:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gthB1 B:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gthB5 B:184-287,B:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gthB4 B:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gthB3 B:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gthB2 B:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gthC1 C:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gthC5 C:184-287,C:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gthC4 C:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gthC3 C:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gthC2 C:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e1gthD1 D:2-183 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e1gthD5 D:184-287,D:441-532 Rossmann-like Rossmann-related Nucleotide-binding domain
e1gthD4 D:288-440 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1gthD3 D:533-844 TIM beta/alpha-barrel TIM barrels TIM barrels
e1gthD2 D:845-1017 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin

Structural contacts of domain e1gthC2 of H-group "4Fe-4S ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gthD3 C:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e1gthD1 C:X,Y,Z->D:x,y,z alpha-helical ferredoxin Interaction Interface Pymol
e1gthB2 C:-X+1,Y-1/2,-Z->B:x,y,z 4Fe-4S ferredoxin Interaction Interface Pymol
e1gthC5 C:X-1,Y,Z->C:x,y,z Rossmann-related Interaction Interface Pymol