Domain ID e1h38A1

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  • A: alpha arrays
  • X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • F: RNA_pol
UID: 000047606
Type: Automatic domain
Parent: e1mswD1
Range: A:552-778
PDB: 1h38
PDB Description: DNA-DIRECTED RNA POLYMERASE
UniProt: P00573
Hsap BLAST neighbor: O00411
Species: Enterobacteria phage T7

Structure of domain e1h38A1

Domains in the same chain:

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e1h38A2 A:2-262 HTH HTH HTH in T7 RNA polymerase
e1h38A4 A:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1h38A3 A:448-527 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e1h38A5 A:528-551,A:779-882 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1h38A1 A:552-778 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1h38A2 A:2-262 HTH HTH HTH in T7 RNA polymerase
e1h38A4 A:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1h38A3 A:448-527 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e1h38A5 A:528-551,A:779-882 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1h38A1 A:552-778 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1h38B4 B:2-262 HTH HTH HTH in T7 RNA polymerase
e1h38B2 B:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1h38B3 B:448-527 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e1h38B5 B:528-551,B:779-882 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1h38B1 B:552-778 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1h38C4 C:2-262 HTH HTH HTH in T7 RNA polymerase
e1h38C2 C:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1h38C3 C:448-527 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e1h38C5 C:528-551,C:779-882 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1h38C1 C:552-778 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1h38D4 D:2-262 HTH HTH HTH in T7 RNA polymerase
e1h38D2 D:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1h38D3 D:448-527 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e1h38D5 D:528-551,D:779-882 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1h38D1 D:552-778 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e1h38A1 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1h38B3 A:X,Y,Z->B:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e1h38B1 A:X,Y,Z->B:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e1h38B1 A:X,Y,Z->D:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e1h38B3 A:X-1,Y-1,Z->B:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol