ECOD: domain e1h3nA1

Domain ID e1h3nA1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: acid protease
F: tRNA-synt_1_2

UID:	000000270
Type:	Manual and representative domain
Range:	A:226-417
Ligands:	LEU SO4
PDB:	1h3n
PDB Description:	LEUCYL-TRNA SYNTHETASE
UniProt:	Q7SIE4
Hsap BLAST neighbor:	P26640
Species:	Thermus thermophilus

Domain
In chain context
In PDB context

Structure of domain e1h3nA1

Domains in the same chain:

Download Pymol

e1h3nA3	A:1-148,A:497-575	HUP domain-like	HUP domains	HUP domains
e1h3nA4	A:149-225	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1h3nA1	A:226-417	cradle loop barrel	RIFT-related	acid protease
e1h3nA5	A:418-496	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1h3nA6	A:578-637	Rubredoxin-like	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)	Rubredoxin-like domain in leucyl-tRNA synthetase (LS2)
e1h3nA2	A:638-814	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Domains in the same PDB:

e1h3nA3	A:1-148,A:497-575	HUP domain-like	HUP domains	HUP domains
e1h3nA4	A:149-225	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1h3nA1	A:226-417	cradle loop barrel	RIFT-related	acid protease
e1h3nA5	A:418-496	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1h3nA6	A:578-637	Rubredoxin-like	Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)	Rubredoxin-like domain in leucyl-tRNA synthetase (LS2)
e1h3nA2	A:638-814	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Structural contacts of domain e1h3nA1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1h3nA1	A:x,y,z->A:-X,Y,-Z+1/2	RIFT-related	Interaction Interface Pymol
e1h3nA1	A:x,y,z->A:-X,Y,-Z+1/2	RIFT-related	Interaction Interface Pymol
e1h3nA1	A:-X,Y,-Z+1/2->A:x,y,z	RIFT-related	Interaction Interface Pymol
e1h3nA1	A:-X,Y,-Z+1/2->A:x,y,z	RIFT-related	Interaction Interface Pymol
e1h3nA1	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1	RIFT-related	Interaction Interface Pymol
e1h3nA1	A:x,y,z->A:X-1/2,Y+1/2,Z	RIFT-related	Interaction Interface Pymol