Domain ID e1ikvB1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 000054812
Type: Automatic domain
Parent: e2zd1B1
Range: B:1242-1315
PDB: 1ikv
PDB Description: POL POLYPROTEIN
UniProt: P03366
Species: Human immunodeficiency virus 1

Structure of domain e1ikvB1

Domains in the same chain:

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e1ikvB2 B:1005-1241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1ikvB1 B:1242-1315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1ikvB3 B:1316-1427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e1ikvA2 A:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1ikvA1 A:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1ikvA4 A:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1ikvA3 A:431-556 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1ikvB2 B:1005-1241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1ikvB1 B:1242-1315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1ikvB3 B:1316-1427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1ikvB1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ikvA3 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e1ikvA2 B:x,y,z->A:-X-1/2,Y-1/2,-Z+5/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1ikvA3 B:x,y,z->A:-X,Y,-Z+5/2 Ribonuclease H-like Interaction Interface Pymol