Domain ID e1jkhB1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 000054828
Type: Automatic domain
Parent: e2zd1B1
Range: B:242-315
PDB: 1jkh
PDB Description: HIV-1 RT, B-CHAIN
UniProt: P04585
Species:

Structure of domain e1jkhB1

Domains in the same chain:

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e1jkhB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1jkhB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1jkhB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e1jkhA8 A:2-240 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1jkhA7 A:241-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1jkhA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1jkhA6 A:429-554 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1jkhB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1jkhB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1jkhB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1jkhB1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1jkhA6 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e1jkhA7 B:x,y,z->A:-X+1/2,-Y,Z-1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1jkhA6 B:x,y,z->A:-X+1/2,-Y,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e1jkhA5 B:x,y,z->A:-X+1/2,-Y,Z-1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol