Domain ID e1jroE4

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: Fer2
UID: 001651188
Type: Automatic domain
Parent: e1wriA1
Range: E:1-84
Ligands: FAD FES
PDB: 1jro
PDB Description: xanthine dehydrogenase, chain A
UniProt: O54050
Species: Rhodobacter capsulatus

Structure of domain e1jroE4

Domains in the same chain:

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e1jroE4 E:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jroE3 E:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jroE1 E:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jroE2 E:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU

Domains in the same PDB:

e1jroA6 A:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jroA5 A:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jroA4 A:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jroA3 A:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jroB2 B:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jroB4 B:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jroB3 B:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jroC4 C:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jroC3 C:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jroC1 C:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jroC2 C:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jroD2 D:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jroD4 D:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jroD3 D:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jroE4 E:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jroE3 E:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jroE1 E:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jroE2 E:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jroF2 F:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jroF4 F:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jroF3 F:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jroG4 G:1-84 beta-Grasp Ubiquitin-related Ubiquitin-like
e1jroG3 G:85-166 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1jroG1 G:179-345 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1jroG2 G:346-462 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1jroH2 H:2-123 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1jroH4 H:125-377 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1jroH3 H:378-777 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain

Structural contacts of domain e1jroE4 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1jroF4 E:X,Y,Z->F:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e1jroF3 E:X,Y,Z->F:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e1jroF2 E:X,Y,Z->F:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol