Domain ID e1k1qB1

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: HHH_5
UID: 000048197
Type: Automatic domain
Parent: e1szpA1
Range: B:178-239
PDB: 1k1q
PDB Description: DBH protein
UniProt: P96022
Species: Sulfolobus solfataricus

Structure of domain e1k1qB1

Domains in the same chain:

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e1k1qB3 B:1-20,B:76-177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1k1qB4 B:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e1k1qB1 B:178-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e1k1qB2 B:240-342 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e1k1qA5 A:1-21,A:77-178 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1k1qA8 A:22-76 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e1k1qA7 A:179-241 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e1k1qA6 A:242-344 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e1k1qB3 B:1-20,B:76-177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1k1qB4 B:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e1k1qB1 B:178-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e1k1qB2 B:240-342 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e1k1qB1 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1k1qA6 B:x,y,z->A:-Y+1,X-Y,Z+1/3 Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol
e1k1qA7 B:-X+1,-Y,Z-1/2->A:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol