Domain ID e1k25C8

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  • A: beta complex topology
  • X: Penicillin binding protein dimerisation domain
  • H: Penicillin binding protein dimerisation domain
  • T: Penicillin binding protein dimerisation domain
  • F: PBP_dimer
UID: 001235425
Type: Automatic domain
Parent: e1rp5A6
Range: C:2067-2099,C:2181-2264
PDB: 1k25
PDB Description: low-affinity PENICILLIN-BINDING PROTEIN 2X
UniProt: O34006
Species: Streptococcus pneumoniae

Structure of domain e1k25C8

Domains in the same chain:

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e1k25C8 C:2067-2099,C:2181-2264 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e1k25C12 C:2265-2331,C:2453-2631 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e1k25C9 C:2332-2360,C:2397-2455 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e1k25C11 C:2632-2692 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25C10 C:2693-2750 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C

Domains in the same PDB:

e1k25A1 A:67-99,A:181-264 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e1k25A2 A:265-331,A:453-631 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e1k25A3 A:332-360,A:397-455 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e1k25A5 A:632-692 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25A4 A:693-750 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25B1 B:1066-1092,B:1184-1231,B:1257-1263 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e1k25B3 B:1093-1100,B:1150-1183 ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain
e1k25B6 B:1264-1333,B:1456-1631 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e1k25B2 B:1334-1360,B:1397-1455 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e1k25B4 B:1632-1692 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25B5 B:1693-1749 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25C8 C:2067-2099,C:2181-2264 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e1k25C12 C:2265-2331,C:2453-2631 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e1k25C9 C:2332-2360,C:2397-2455 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e1k25C11 C:2632-2692 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25C10 C:2693-2750 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25D1 D:3066-3092,D:3184-3231,D:3257-3263 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e1k25D2 D:3093-3100,D:3150-3183 ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain
e1k25D4 D:3264-3333,D:3456-3612 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e1k25D6 D:3334-3360,D:3397-3455 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e1k25D5 D:3632-3692 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C
e1k25D3 D:3693-3749 CI-2 family of serine protease inhibitors-like Penicillin-binding protein 2x (pbp-2x)-C Penicillin-binding protein 2x (pbp-2x)-C

Structural contacts of domain e1k25C8 of H-group "Penicillin binding protein dimerisation domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1k25D4 C:X,Y,Z->D:x,y,z a+b domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e1k25D6 C:X,Y,Z->D:x,y,z alpha-helical domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e1k25D1 C:X,Y,Z->D:x,y,z Penicillin binding protein dimerisation domain Interaction Interface Pymol
e1k25D1 C:x,y,z->D:-Y+1,X-Y+1,Z-1/3 Penicillin binding protein dimerisation domain Interaction Interface Pymol