| UID: | 000114984 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1cxqA1 |
| Range: | D:56-209 |
| Ligands: | PO4 |
| PDB: | 1k6y |
| PDB Description: | INTEGRASE |
| UniProt: | P12497 |
| Hsap BLAST neighbor: | P63133 |
| Species: | Human immunodeficiency virus 1 |
Structure of domain e1k6yD2
Domains in the same chain:
| e1k6yD1 | D:1-46 | HTH | HTH | tri-helical |
| e1k6yD2 | D:56-209 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
Domains in the same PDB:
| e1k6yA1 | A:1-46 | HTH | HTH | tri-helical |
| e1k6yA2 | A:56-209 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
| e1k6yB1 | B:1-46 | HTH | HTH | tri-helical |
| e1k6yB2 | B:56-209 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
| e1k6yC1 | C:1-46 | HTH | HTH | tri-helical |
| e1k6yC2 | C:56-209 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
| e1k6yD1 | D:1-46 | HTH | HTH | tri-helical |
| e1k6yD2 | D:56-209 | Ribonuclease H-like | Ribonuclease H-like | Ribonuclease H-like |
Structural contacts of domain e1k6yD2 of H-group "Ribonuclease H-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1k6yC1 | D:X,Y,Z->C:x,y,z | HTH | Interaction Interface Pymol |
| e1k6yC2 | D:X,Y,Z->C:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e1k6yB2 | D:X,Y,Z->B:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e1k6yB1 | D:X,Y,Z->B:x,y,z | HTH | Interaction Interface Pymol |
| e1k6yA2 | D:-Y+1,-X+2,-Z+1/2->A:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e1k6yA1 | D:-Y+3/2,X-1/2,Z-1/4->A:x,y,z | HTH | Interaction Interface Pymol |
