ECOD: domain e1kk1A4

Domain ID e1kk1A4

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: GTP_EFTU

UID:	000118980
Type:	Manual and representative domain
Range:	A:6-55,A:84-200
Ligands:	GNP MG
PDB:	1kk1
PDB Description:	eIF2gamma
UniProt:	Q9V1G0
Hsap BLAST neighbor:	Q2VIR3
Species:	Pyrococcus abyssi

Domain
In chain context
In PDB context

Structure of domain e1kk1A4

Domains in the same chain:

Download Pymol

e1kk1A4	A:6-55,A:84-200	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1kk1A3	A:56-83	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1kk1A1	A:201-321	cradle loop barrel	RIFT-related	Alanine racemase-C
e1kk1A2	A:322-410	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e1kk1A4	A:6-55,A:84-200	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1kk1A3	A:56-83	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1kk1A1	A:201-321	cradle loop barrel	RIFT-related	Alanine racemase-C
e1kk1A2	A:322-410	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Structural contacts of domain e1kk1A4 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1kk1A1	A:x,y,z->A:-X,Y-1/2,-Z+1	RIFT-related	Interaction Interface Pymol
e1kk1A2	A:x,y,z->A:-X,Y-1/2,-Z+1	RIFT-related	Interaction Interface Pymol
e1kk1A3	A:-X,Y-1/2,-Z+1->A:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e1kk1A2	A:x,y,z->A:-X,Y-1/2,-Z	RIFT-related	Interaction Interface Pymol