ECOD: domain e1knyA1

Domain ID e1knyA1

A: alpha bundles
X: Four-helical up-and-down bundle
H: HEPN
T: Nucleotidyltransferase substrate binding subunit/domain
F: KNTase_C

UID:	000003733
Type:	Manual and representative domain
Range:	A:126-253
Ligands:	APC KAN
PDB:	1kny
PDB Description:	KANAMYCIN NUCLEOTIDYLTRANSFERASE
UniProt:	P05057
Species:	Staphylococcus aureus

Domain
In chain context
In PDB context

Structure of domain e1knyA1

Domains in the same chain:

Download Pymol

e1knyA2	A:1-125	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e1knyA1	A:126-253	Four-helical up-and-down bundle	HEPN	Nucleotidyltransferase substrate binding subunit/domain

Domains in the same PDB:

e1knyA2	A:1-125	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e1knyA1	A:126-253	Four-helical up-and-down bundle	HEPN	Nucleotidyltransferase substrate binding subunit/domain
e1knyB2	B:1-125	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e1knyB1	B:126-253	Four-helical up-and-down bundle	HEPN	Nucleotidyltransferase substrate binding subunit/domain

Structural contacts of domain e1knyA1 of H-group "HEPN":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1knyB1	A:X,Y,Z->B:x,y,z	HEPN	Interaction Interface Pymol
e1knyB2	A:X,Y,Z->B:x,y,z	Nucleotidyltransferase	Interaction Interface Pymol
e1knyB2	A:x,y,z->B:-X+1,Y-1/2,-Z+1/2	Nucleotidyltransferase	Interaction Interface Pymol