ECOD: domain e1kyoB1

Domain ID e1kyoB1

A: a+b two layers
X: LuxS, MPP, ThrRS/AlaRS common domain
H: LuxS, MPP, ThrRS/AlaRS common domain
T: LuxS/MPP-like metallohydrolase
F: Peptidase_M16

UID:	000067334
Type:	Automatic domain
Parent:	e1ppjB1
Range:	B:17-218
PDB:	1kyo
PDB Description:	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2
UniProt:	P07257
Hsap BLAST neighbor:	P22695
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e1kyoB1	B:17-218	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoB2	B:219-368	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase

Domains in the same PDB:

Structural contacts of domain e1kyoB1 of H-group "LuxS, MPP, ThrRS/AlaRS common domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1kyoA2	B:x,y,z->A:X,Y,Z	LuxS, MPP, ThrRS/AlaRS common domain	Interaction Interface Pymol
e1kyoM2	B:X,Y,Z->M:x,y,z	LuxS, MPP, ThrRS/AlaRS common domain	Interaction Interface Pymol
e1kyoR1	B:X,Y,Z->R:x,y,z	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Interaction Interface Pymol

e1kyoA1	A:27-238	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoA2	A:240-456	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoB1	B:17-218	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoB2	B:219-368	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoC2	C:14-261	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e1kyoC1	C:262-380	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoD1	D:65-260	Cytochrome c-like	Cytochrome c	Cytochrome c
e1kyoD2	D:261-306	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor
e1kyoE2	E:31-86	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e1kyoE1	E:90-156,E:199-214	ISP domain	ISP domain	ISP domain
e1kyoE3	E:157-198	Trm112p-like	Trm112p-like	Trm112p-like
e1kyoF1	F:74-147	cytochrome bc1 complex 11 kDa protein-like	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoG1	G:3-127	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoH1	H:2-94	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoI1	I:4-56	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoJ1	J:1-122	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1kyoK1	K:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1kyoL1	L:27-238	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoL2	L:240-456	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoM1	M:17-218	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoM2	M:219-368	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1kyoN2	N:14-261	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e1kyoN1	N:262-380	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoO1	O:65-260	Cytochrome c-like	Cytochrome c	Cytochrome c
e1kyoO2	O:261-306	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor
e1kyoP2	P:31-86	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e1kyoP1	P:90-156,P:199-214	ISP domain	ISP domain	ISP domain
e1kyoP3	P:157-198	Trm112p-like	Trm112p-like	Trm112p-like
e1kyoQ1	Q:74-147	cytochrome bc1 complex 11 kDa protein-like	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoR1	R:3-127	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoS1	S:2-94	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoT1	T:4-56	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1kyoU1	U:1-122	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1kyoV1	V:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1kyoW1	W:1-108	Cytochrome c-like	Cytochrome c	Cytochrome c