ECOD: domain e1lk5C1

Domain ID e1lk5C1

A: a+b two layers
X: Alpha-beta plaits
H: D-ribose-5-phosphate isomerase (RpiA), lid domain
T: D-ribose-5-phosphate isomerase (RpiA), lid domain
F: Rib_5-P_isom_A

UID:	000065365
Type:	Automatic domain
Parent:	e1uj4A1
Range:	C:132-209
Ligands:	CL NA
PDB:	1lk5
PDB Description:	D-Ribose-5-Phosphate Isomerase
UniProt:	O50083
Hsap BLAST neighbor:	P49247
Species:	Pyrococcus horikoshii

Domains in the same chain:

Download Pymol

e1lk5C2	C:1-130,C:211-229	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e1lk5C1	C:132-209	Alpha-beta plaits	D-ribose-5-phosphate isomerase (RpiA), lid domain	D-ribose-5-phosphate isomerase (RpiA), lid domain

Domains in the same PDB:

e1lk5A2	A:1-130,A:211-229	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e1lk5A1	A:132-209	Alpha-beta plaits	D-ribose-5-phosphate isomerase (RpiA), lid domain	D-ribose-5-phosphate isomerase (RpiA), lid domain
e1lk5B2	B:1-130,B:211-229	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e1lk5B1	B:132-209	Alpha-beta plaits	D-ribose-5-phosphate isomerase (RpiA), lid domain	D-ribose-5-phosphate isomerase (RpiA), lid domain
e1lk5C2	C:1-130,C:211-229	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e1lk5C1	C:132-209	Alpha-beta plaits	D-ribose-5-phosphate isomerase (RpiA), lid domain	D-ribose-5-phosphate isomerase (RpiA), lid domain
e1lk5D2	D:1-130,D:211-229	Rossmann-like	Rossmann-related	NagB/RpiA/CoA transferase-like
e1lk5D1	D:132-209	Alpha-beta plaits	D-ribose-5-phosphate isomerase (RpiA), lid domain	D-ribose-5-phosphate isomerase (RpiA), lid domain

Structural contacts of domain e1lk5C1 of H-group "D-ribose-5-phosphate isomerase (RpiA), lid domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1lk5D1	C:X,Y,Z->D:x,y,z	D-ribose-5-phosphate isomerase (RpiA), lid domain	Interaction Interface Pymol
e1lk5D2	C:X,Y,Z->D:x,y,z	Rossmann-related	Interaction Interface Pymol
e1lk5A2	C:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1lk5A1	C:x,y,z->A:X,Y,Z	D-ribose-5-phosphate isomerase (RpiA), lid domain	Interaction Interface Pymol
e1lk5A1	C:x,y,z->A:-X,Y-1/2,-Z+3/2	D-ribose-5-phosphate isomerase (RpiA), lid domain	Interaction Interface Pymol
e1lk5B1	C:x,y,z->B:-X,Y-1/2,-Z+3/2	D-ribose-5-phosphate isomerase (RpiA), lid domain	Interaction Interface Pymol