Domain ID e1ltlD3

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Unmapped domains
UID: 000089080
Type: Automatic domain
Parent: e1ltlA3
Range: D:123-171
Ligands: ZN
PDB: 1ltl
PDB Description: DNA replication initiator (Cdc21/Cdc54)
UniProt: O27798
Species: Methanothermobacter thermautotrophicus

Structure of domain e1ltlD3

Domains in the same chain:

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e1ltlD2 D:4-89 N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e1ltlD1 D:90-122,D:172-241 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ltlD3 D:123-171 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e1ltlA2 A:4-90 N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e1ltlA1 A:91-123,A:173-242 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ltlA3 A:124-172 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ltlB2 B:4-89 N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e1ltlB1 B:90-122,B:172-241 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ltlB3 B:123-171 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ltlC2 C:4-89 N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e1ltlC1 C:90-122,C:172-241 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ltlC3 C:123-171 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ltlD2 D:4-89 N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e1ltlD1 D:90-122,D:172-241 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ltlD3 D:123-171 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ltlE2 E:4-89 N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e1ltlE1 E:90-122,E:172-241 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ltlE3 E:123-171 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1ltlF2 F:4-89 N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54) N-terminal subdomain in DNA replication initiator (cdc21/cdc54)
e1ltlF1 F:90-122,F:172-241 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ltlF3 F:123-171 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1ltlD3 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ltlC3 D:x,y,z->C:-Y+1,X-Y,Z Rubredoxin-related Interaction Interface Pymol
e1ltlC3 D:x,y,z->C:X,Y,Z Rubredoxin-related Interaction Interface Pymol
e1ltlC1 D:x,y,z->C:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e1ltlF3 D:X,Y,Z->F:x,y,z Rubredoxin-related Interaction Interface Pymol
e1ltlE3 D:X,Y,Z->E:x,y,z Rubredoxin-related Interaction Interface Pymol