ECOD: domain e1m3yA2

Domain ID e1m3yA2

A: beta sandwiches
X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Capsid_NCLDV

UID:	000001186
Type:	Manual and representative domain
Range:	A:222-437
Ligands:	HG MAN NAG NDG
PDB:	1m3y
PDB Description:
UniProt:	P30328
Species:	Paramecium bursaria Chlorella virus 1

Domains in the same chain:

Download Pymol

e1m3yA1	A:25-221	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yA2	A:222-437	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)

Domains in the same PDB:

e1m3yA1	A:25-221	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yA2	A:222-437	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yB1	B:25-221	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yB2	B:222-437	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yC1	C:25-221	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yC2	C:222-437	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yD1	D:25-221	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1m3yD2	D:222-437	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)

Structural contacts of domain e1m3yA2 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1m3yA1	A:x,y,z->A:-Z+1/2,-X,Y+1/2	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1m3yA1	A:-Z+1/2,-X,Y+1/2->A:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1m3yD1	A:X,Y,Z->D:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1m3yD2	A:X,Y,Z->D:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1m3yB1	A:x,y,z->B:-Z+1/2,-X,Y+1/2	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1m3yB2	A:x,y,z->B:-Z+1/2,-X,Y+1/2	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1m3yC1	A:Z,X,Y->C:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1m3yC2	A:Z,X,Y->C:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol