ECOD: domain e1m5qD2

Domain ID e1m5qD2

A: a+b two layers
X: Sm-Like archaeal protein Smap3, C-terminal domain
H: Sm-Like archaeal protein Smap3, C-terminal domain
T: Sm-Like archaeal protein Smap3, C-terminal domain
F: Lsm_C

UID:	000073587
Type:	Automatic domain
Parent:	e1m5q12
Range:	D:77-137
Ligands:	CD
PDB:	1m5q
PDB Description:	small nuclear ribonucleoprotein homolog
UniProt:	Q8ZVU2
Species:	Pyrobaculum aerophilum

Domains in the same chain:

Download Pymol

e1m5qD1	D:12-76	SH3	SH3	SH3
e1m5qD2	D:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain

Domains in the same PDB:

e1m5q11	1:12-77	SH3	SH3	SH3
e1m5q12	1:78-138	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5q21	2:12-76	SH3	SH3	SH3
e1m5q22	2:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qA1	A:12-76	SH3	SH3	SH3
e1m5qA2	A:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qB1	B:12-76	SH3	SH3	SH3
e1m5qB2	B:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qC1	C:12-76	SH3	SH3	SH3
e1m5qC2	C:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qD1	D:12-76	SH3	SH3	SH3
e1m5qD2	D:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qE1	E:12-76	SH3	SH3	SH3
e1m5qE2	E:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qF1	F:12-76	SH3	SH3	SH3
e1m5qF2	F:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qG1	G:12-76	SH3	SH3	SH3
e1m5qG2	G:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qH1	H:12-76	SH3	SH3	SH3
e1m5qH2	H:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qI1	I:12-76	SH3	SH3	SH3
e1m5qI2	I:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qJ1	J:12-76	SH3	SH3	SH3
e1m5qJ2	J:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qK1	K:12-76	SH3	SH3	SH3
e1m5qK2	K:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qL1	L:12-76	SH3	SH3	SH3
e1m5qL2	L:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qM1	M:12-76	SH3	SH3	SH3
e1m5qM2	M:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qN1	N:12-76	SH3	SH3	SH3
e1m5qN2	N:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qO1	O:12-76	SH3	SH3	SH3
e1m5qO2	O:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qP1	P:12-76	SH3	SH3	SH3
e1m5qP2	P:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qQ1	Q:12-76	SH3	SH3	SH3
e1m5qQ2	Q:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qR1	R:12-76	SH3	SH3	SH3
e1m5qR2	R:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qS1	S:12-76	SH3	SH3	SH3
e1m5qS2	S:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qT1	T:12-76	SH3	SH3	SH3
e1m5qT2	T:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qU1	U:12-76	SH3	SH3	SH3
e1m5qU2	U:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qV1	V:12-76	SH3	SH3	SH3
e1m5qV2	V:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qW1	W:12-76	SH3	SH3	SH3
e1m5qW2	W:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qX1	X:12-76	SH3	SH3	SH3
e1m5qX2	X:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qY1	Y:12-76	SH3	SH3	SH3
e1m5qY2	Y:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain
e1m5qZ1	Z:12-76	SH3	SH3	SH3
e1m5qZ2	Z:77-137	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain	Sm-Like archaeal protein Smap3, C-terminal domain

Structural contacts of domain e1m5qD2 of H-group "Sm-Like archaeal protein Smap3, C-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1m5qK1	D:X,Y,Z->K:x,y,z	SH3	Interaction Interface Pymol
e1m5qK2	D:X,Y,Z->K:x,y,z	Sm-Like archaeal protein Smap3, C-terminal domain	Interaction Interface Pymol
e1m5qC1	D:x,y,z->C:X,Y,Z	SH3	Interaction Interface Pymol
e1m5qL2	D:X,Y,Z->L:x,y,z	Sm-Like archaeal protein Smap3, C-terminal domain	Interaction Interface Pymol
e1m5qJ1	D:X,Y,Z->J:x,y,z	SH3	Interaction Interface Pymol