Domain ID e1nbmD2

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: ATP-synt_ab
UID: 000102340
Type: Automatic domain
Parent: e2jdiA3
Range: D:82-357
Ligands: ADP MG
PDB: 1nbm
PDB Description: F1-ATPASE
UniProt: P00829
Hsap BLAST neighbor: P06576
Species: Bos taurus

Structure of domain e1nbmD2

Domains in the same chain:

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e1nbmD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1nbmD2 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1nbmD3 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase

Domains in the same PDB:

e1nbmA1 A:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1nbmA3 A:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1nbmA2 A:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1nbmB1 B:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1nbmB3 B:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1nbmB2 B:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1nbmC1 C:24-94 cradle loop barrel RIFT-related Alanine racemase-C
e1nbmC3 C:95-379 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1nbmC2 C:380-510 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1nbmD1 D:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1nbmD2 D:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1nbmD3 D:358-475 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1nbmE1 E:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1nbmE2 E:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1nbmE3 E:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1nbmF1 F:10-81 cradle loop barrel RIFT-related Alanine racemase-C
e1nbmF2 F:82-357 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1nbmF3 F:358-474 C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase
e1nbmG1 G:1-44,G:77-90,G:209-272 ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit

Structural contacts of domain e1nbmD2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1nbmC2 D:x,y,z->C:X,Y,Z C-terminal domain of alpha and beta subunits of F1 ATP synthase Interaction Interface Pymol
e1nbmC3 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1nbmA1 D:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e1nbmA3 D:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1nbmG1 D:X,Y,Z->G:x,y,z ATP synthase (F1-ATPase), gamma subunit Interaction Interface Pymol
e1nbmE2 D:x,y,z->E:X,Y-1,Z P-loop domains-related Interaction Interface Pymol