ECOD: domain e1nj8D3

Domain ID e1nj8D3

A: a/b three-layered sandwiches
X: Anticodon-binding domain of Class II aaRS
H: Anticodon-binding domain of Class II aaRS
T: Anticodon-binding domain of Class II aaRS
F: HGTP_anticodon

UID:	000107456
Type:	Automatic domain
Parent:	e1kmmA2
Range:	D:268-393
PDB:	1nj8
PDB Description:	Proline-tRNA Synthetase
UniProt:	Q58635
Hsap BLAST neighbor:	P07814
Species:	Methanocaldococcus jannaschii

Domains in the same chain:

Download Pymol

e1nj8D2	D:0-267	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nj8D3	D:268-393	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS
e1nj8D1	D:394-455	IF3-like	C-terminal domain of ProRS	C-terminal domain of ProRS

Domains in the same PDB:

e1nj8A2	A:0-267	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nj8A3	A:268-393	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS
e1nj8A1	A:394-455	IF3-like	C-terminal domain of ProRS	C-terminal domain of ProRS
e1nj8B2	B:0-267	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nj8B3	B:268-393	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS
e1nj8B1	B:394-455	IF3-like	C-terminal domain of ProRS	C-terminal domain of ProRS
e1nj8C2	C:0-267	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nj8C3	C:268-393	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS
e1nj8C1	C:394-455	IF3-like	C-terminal domain of ProRS	C-terminal domain of ProRS
e1nj8D2	D:0-267	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nj8D3	D:268-393	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS
e1nj8D1	D:394-455	IF3-like	C-terminal domain of ProRS	C-terminal domain of ProRS

Structural contacts of domain e1nj8D3 of H-group "Anticodon-binding domain of Class II aaRS":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1nj8C1	D:x,y,z->C:-X+1,Y-1/2,-Z+1	C-terminal domain of ProRS	Interaction Interface Pymol
e1nj8C2	D:x,y,z->C:-X+1,Y-1/2,-Z+1	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e1nj8A3	D:X,Y,Z-1->A:x,y,z	Anticodon-binding domain of Class II aaRS	Interaction Interface Pymol