Domain ID e1nj8D3

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  • A: a/b three-layered sandwiches
  • X: Anticodon-binding domain of Class II aaRS
  • H: Anticodon-binding domain of Class II aaRS
  • T: Anticodon-binding domain of Class II aaRS
  • F: HGTP_anticodon
UID: 000107456
Type: Automatic domain
Parent: e1kmmA2
Range: D:268-393
PDB: 1nj8
PDB Description: Proline-tRNA Synthetase
UniProt: Q58635
Hsap BLAST neighbor: P07814
Species: Methanocaldococcus jannaschii

Structure of domain e1nj8D3

Domains in the same chain:

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e1nj8D2 D:0-267 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e1nj8D3 D:268-393 Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS
e1nj8D1 D:394-455 IF3-like C-terminal domain of ProRS C-terminal domain of ProRS

Domains in the same PDB:

e1nj8A2 A:0-267 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e1nj8A3 A:268-393 Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS
e1nj8A1 A:394-455 IF3-like C-terminal domain of ProRS C-terminal domain of ProRS
e1nj8B2 B:0-267 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e1nj8B3 B:268-393 Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS
e1nj8B1 B:394-455 IF3-like C-terminal domain of ProRS C-terminal domain of ProRS
e1nj8C2 C:0-267 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e1nj8C3 C:268-393 Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS
e1nj8C1 C:394-455 IF3-like C-terminal domain of ProRS C-terminal domain of ProRS
e1nj8D2 D:0-267 Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases
e1nj8D3 D:268-393 Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS Anticodon-binding domain of Class II aaRS
e1nj8D1 D:394-455 IF3-like C-terminal domain of ProRS C-terminal domain of ProRS

Structural contacts of domain e1nj8D3 of H-group "Anticodon-binding domain of Class II aaRS":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1nj8C1 D:x,y,z->C:-X+1,Y-1/2,-Z+1 C-terminal domain of ProRS Interaction Interface Pymol
e1nj8C2 D:x,y,z->C:-X+1,Y-1/2,-Z+1 Class II aaRS and biotin synthetases Interaction Interface Pymol
e1nj8A3 D:X,Y,Z-1->A:x,y,z Anticodon-binding domain of Class II aaRS Interaction Interface Pymol