Domain ID e1npdB1

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: NAD(P)-binding Rossmann-fold domains
  • F: SDH_C
UID: 000098388
Type: Automatic domain
Parent: e1vi2A1
Range: B:107-288
Ligands: NAD
PDB: 1npd
PDB Description: HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB
UniProt: P0A6D5
Species: Escherichia coli

Structure of domain e1npdB1

Structural contacts of domain e1npdB1 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1npdB2 B:x,y,z->B:X,Y,Z-1 Class I glutamine amidotransferase-like Interaction Interface Pymol
e1npdB1 B:x,y,z->B:X,Y,Z-1 Rossmann-related Interaction Interface Pymol
e1npdB2 B:X,Y,Z-1->B:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol
e1npdB1 B:X,Y,Z-1->B:x,y,z Rossmann-related Interaction Interface Pymol
e1npdB2 B:x,y,z->B:-Y-1,X-Y-1,Z+1/3 Class I glutamine amidotransferase-like Interaction Interface Pymol
e1npdB1 B:x,y,z->B:-Y-1,X-Y-1,Z+1/3 Rossmann-related Interaction Interface Pymol
e1npdB1 B:-Y-1,X-Y-1,Z+1/3->B:x,y,z Rossmann-related Interaction Interface Pymol
e1npdA1 B:x,y,z->A:-X-1,-Y-1,Z Rossmann-related Interaction Interface Pymol
e1npdA2 B:x,y,z->A:-X-1,-Y-1,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e1npdB1 B:x,y,z->B:-Y-1,X-Y-1,Z-2/3 Rossmann-related Interaction Interface Pymol
e1npdB1 B:-Y-1,X-Y-1,Z-2/3->B:x,y,z Rossmann-related Interaction Interface Pymol