ECOD: domain e1npdB1

Domain ID e1npdB1

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: NAD(P)-binding Rossmann-fold domains
F: SDH_C

UID:	000098388
Type:	Automatic domain
Parent:	e1vi2A1
Range:	B:107-288
Ligands:	NAD
PDB:	1npd
PDB Description:	HYPOTHETICAL SHIKIMATE 5-DEHYDROGENASE-LIKE PROTEIN YDIB
UniProt:	P0A6D5
Species:	Escherichia coli

Domains in the same chain:

Download Pymol

e1npdB2	B:5-106	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1npdB1	B:107-288	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains

Domains in the same PDB:

e1npdA2	A:5-106	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1npdA1	A:107-287	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1npdB2	B:5-106	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1npdB1	B:107-288	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains

Structural contacts of domain e1npdB1 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1npdB2	B:x,y,z->B:X,Y,Z-1	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1npdB1	B:x,y,z->B:X,Y,Z-1	Rossmann-related	Interaction Interface Pymol
e1npdB2	B:X,Y,Z-1->B:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1npdB1	B:X,Y,Z-1->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e1npdB2	B:x,y,z->B:-Y-1,X-Y-1,Z+1/3	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1npdB1	B:x,y,z->B:-Y-1,X-Y-1,Z+1/3	Rossmann-related	Interaction Interface Pymol
e1npdB1	B:-Y-1,X-Y-1,Z+1/3->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e1npdA1	B:x,y,z->A:-X-1,-Y-1,Z	Rossmann-related	Interaction Interface Pymol
e1npdA2	B:x,y,z->A:-X-1,-Y-1,Z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1npdB1	B:x,y,z->B:-Y-1,X-Y-1,Z-2/3	Rossmann-related	Interaction Interface Pymol
e1npdB1	B:-Y-1,X-Y-1,Z-2/3->B:x,y,z	Rossmann-related	Interaction Interface Pymol