ECOD: domain e1nyrA4

Domain ID e1nyrA4

A: a/b three-layered sandwiches
X: Anticodon-binding domain of Class II aaRS
H: Anticodon-binding domain of Class II aaRS
T: Anticodon-binding domain of Class II aaRS
F: HGTP_anticodon

UID:	000107429
Type:	Automatic domain
Parent:	e1kmmA2
Range:	A:539-645
PDB:	1nyr
PDB Description:	THREONYL-TRNA SYNTHETASE 1
UniProt:	Q8NW68
Hsap BLAST neighbor:	Q9BW92
Species:	Staphylococcus aureus

Domain
In chain context
In PDB context

Structure of domain e1nyrA4

Domains in the same chain:

Download Pymol

e1nyrA2	A:4-62	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1nyrA1	A:65-223	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	ThrRS/AlaRS editing domain
e1nyrA3	A:242-532	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nyrA4	A:539-645	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS

Domains in the same PDB:

e1nyrA2	A:4-62	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1nyrA1	A:65-223	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	ThrRS/AlaRS editing domain
e1nyrA3	A:242-532	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nyrA4	A:539-645	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS
e1nyrB2	B:4-62	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1nyrB1	B:65-223	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	ThrRS/AlaRS editing domain
e1nyrB3	B:242-532	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases
e1nyrB4	B:539-645	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS	Anticodon-binding domain of Class II aaRS

Structural contacts of domain e1nyrA4 of H-group "Anticodon-binding domain of Class II aaRS":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1nyrB2	A:x,y,z->B:-X+1/2,-Y+1,Z-1/2	Ubiquitin-related	Interaction Interface Pymol
e1nyrB3	A:X-1/2,-Y+1/2,-Z+1->B:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e1nyrA2	A:-X+1/2,-Y+1,Z-1/2->A:x,y,z	Ubiquitin-related	Interaction Interface Pymol