ECOD: domain e1nytD1

Domain ID e1nytD1

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: NAD(P)-binding Rossmann-fold domains
F: Shikimate_DH,SDH_C

UID:	000098399
Type:	Automatic domain
Parent:	e1nvtA1
Range:	D:102-270
Ligands:	NAP SO4
PDB:	1nyt
PDB Description:	Shikimate 5-dehydrogenase
UniProt:	P15770
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1nytD1

Domains in the same chain:

Download Pymol

e1nytD2	D:1-101	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1nytD1	D:102-270	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains

Domains in the same PDB:

e1nytA2	A:1-101	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1nytA1	A:102-271	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1nytB2	B:1-101	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1nytB1	B:102-271	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1nytC2	C:1-101	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1nytC1	C:102-269	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1nytD2	D:1-101	Flavodoxin-like	Class I glutamine amidotransferase-like	Aminoacid dehydrogenase-like, N-terminal domain
e1nytD1	D:102-270	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains

Structural contacts of domain e1nytD1 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1nytD1	D:x,y,z->D:-X+1,Y,-Z+1	Rossmann-related	Interaction Interface Pymol
e1nytD2	D:x,y,z->D:-X+1,Y,-Z+1	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1nytD2	D:-X+1,Y,-Z+1->D:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1nytD1	D:-X+1,Y,-Z+1->D:x,y,z	Rossmann-related	Interaction Interface Pymol
e1nytB2	D:x,y,z->B:X,Y,Z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1nytB1	D:x,y,z->B:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1nytA2	D:x,y,z->A:X-1/2,Y+1/2,Z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1nytB2	D:x,y,z->B:-X+1,Y,-Z+1	Class I glutamine amidotransferase-like	Interaction Interface Pymol