Domain ID e1oypD2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 000071317
Type: Automatic domain
Parent: e1r6lA2
Range: D:1-150
Ligands: SO4
PDB: 1oyp
PDB Description: Ribonuclease PH
UniProt: P28619
Species: Bacillus subtilis

Structure of domain e1oypD2

Domains in the same chain:

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e1oypD2 D:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oypD3 D:151-243 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e1oypA2 A:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oypA1 A:151-243 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oypB2 B:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oypB3 B:151-243 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oypC2 C:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oypC1 C:151-243 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oypD2 D:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oypD3 D:151-243 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oypE2 E:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oypE3 E:151-243 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oypF2 F:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oypF1 F:151-243 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e1oypD2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1oypC1 D:x,y,z->C:X,Y,Z Ribonuclease PH domain 2 Interaction Interface Pymol
e1oypC1 D:x,y,z->C:X-1/2,-Y+1/2,-Z+1 Ribonuclease PH domain 2 Interaction Interface Pymol
e1oypC2 D:x,y,z->C:X-1/2,-Y+1/2,-Z+1 Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1oypE2 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1oypA2 D:-X+1/2,-Y,Z-1/2->A:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1oypA1 D:-X+1/2,-Y,Z-1/2->A:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e1oypD3 D:X-1,Y,Z->D:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e1oypE2 D:X-1,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol